Multiple sequence alignment - TraesCS7D01G502600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G502600 chr7D 100.000 3029 0 0 1 3029 608143427 608140399 0.000000e+00 5594.0
1 TraesCS7D01G502600 chr7D 90.018 1082 70 10 1056 2114 600266139 600267205 0.000000e+00 1365.0
2 TraesCS7D01G502600 chr7D 85.422 1269 96 38 990 2182 610566311 610567566 0.000000e+00 1236.0
3 TraesCS7D01G502600 chr7D 92.488 812 46 11 1 802 610565305 610566111 0.000000e+00 1147.0
4 TraesCS7D01G502600 chr7D 83.953 430 61 7 69 496 600262978 600263401 3.640000e-109 405.0
5 TraesCS7D01G502600 chr7D 86.667 375 23 8 2345 2694 26384600 26384972 1.020000e-104 390.0
6 TraesCS7D01G502600 chr7D 87.017 362 20 6 2354 2692 559223523 559223880 1.700000e-102 383.0
7 TraesCS7D01G502600 chr7D 84.293 191 19 7 766 953 600263711 600263893 3.100000e-40 176.0
8 TraesCS7D01G502600 chr7B 88.424 1529 101 30 811 2282 694812034 694813543 0.000000e+00 1773.0
9 TraesCS7D01G502600 chr7B 86.776 1467 111 38 869 2282 698986279 698984843 0.000000e+00 1557.0
10 TraesCS7D01G502600 chr7B 83.676 1752 163 69 605 2282 698515048 698513346 0.000000e+00 1537.0
11 TraesCS7D01G502600 chr7B 87.390 1253 105 25 1021 2248 694308829 694307605 0.000000e+00 1389.0
12 TraesCS7D01G502600 chr7B 86.248 1258 102 31 796 2009 693457059 693455829 0.000000e+00 1299.0
13 TraesCS7D01G502600 chr7B 83.598 1323 128 45 872 2137 694816205 694817495 0.000000e+00 1158.0
14 TraesCS7D01G502600 chr7B 86.102 590 54 11 792 1356 696098287 696097701 7.180000e-171 610.0
15 TraesCS7D01G502600 chr7B 79.177 778 106 29 69 823 694811274 694812018 3.510000e-134 488.0
16 TraesCS7D01G502600 chr7B 83.585 463 58 12 71 522 696099068 696098613 4.670000e-113 418.0
17 TraesCS7D01G502600 chr7B 83.184 446 65 8 69 508 698987254 698986813 1.690000e-107 399.0
18 TraesCS7D01G502600 chr7B 82.774 447 66 8 69 508 693458113 693457671 3.660000e-104 388.0
19 TraesCS7D01G502600 chr7B 82.805 442 43 16 606 1027 694324955 694324527 6.170000e-97 364.0
20 TraesCS7D01G502600 chr7B 81.545 466 60 11 69 522 698515567 698515116 7.980000e-96 361.0
21 TraesCS7D01G502600 chr7B 89.362 282 22 3 2707 2982 697801544 697801265 6.220000e-92 348.0
22 TraesCS7D01G502600 chr7B 89.399 283 16 5 2008 2282 693450578 693450302 8.040000e-91 344.0
23 TraesCS7D01G502600 chr7B 88.652 282 24 3 2707 2982 684972211 684972490 1.350000e-88 337.0
24 TraesCS7D01G502600 chr7B 83.989 356 28 9 633 972 699165004 699164662 6.300000e-82 315.0
25 TraesCS7D01G502600 chr7B 89.540 239 14 6 2755 2983 698513147 698512910 2.950000e-75 292.0
26 TraesCS7D01G502600 chr7B 90.000 190 19 0 2766 2955 693443389 693443200 2.330000e-61 246.0
27 TraesCS7D01G502600 chr7B 90.000 190 19 0 2766 2955 698978068 698977879 2.330000e-61 246.0
28 TraesCS7D01G502600 chr7B 95.789 95 2 1 2190 2282 694817493 694817587 5.230000e-33 152.0
29 TraesCS7D01G502600 chr4A 84.195 1721 164 58 605 2259 661705913 661704235 0.000000e+00 1572.0
30 TraesCS7D01G502600 chr4A 85.928 334 23 12 2385 2694 584676163 584676496 4.840000e-88 335.0
31 TraesCS7D01G502600 chr7A 85.594 1541 106 39 655 2128 700181692 700180201 0.000000e+00 1509.0
32 TraesCS7D01G502600 chr7A 85.557 1544 107 39 652 2128 700528548 700530042 0.000000e+00 1509.0
33 TraesCS7D01G502600 chr7A 92.657 858 49 7 1 853 700525274 700526122 0.000000e+00 1223.0
34 TraesCS7D01G502600 chr7A 87.399 373 24 5 2350 2699 704291782 704292154 1.010000e-109 407.0
35 TraesCS7D01G502600 chr7A 90.066 302 18 3 302 592 700182731 700182431 6.130000e-102 381.0
36 TraesCS7D01G502600 chr7A 86.760 287 26 7 2705 2982 699924566 699924849 2.930000e-80 309.0
37 TraesCS7D01G502600 chr7A 89.404 151 5 3 427 567 700527638 700527787 2.400000e-41 180.0
38 TraesCS7D01G502600 chr7A 91.667 72 6 0 302 373 700527572 700527643 1.920000e-17 100.0
39 TraesCS7D01G502600 chr7A 100.000 29 0 0 617 645 700182433 700182405 2.000000e-03 54.7
40 TraesCS7D01G502600 chr2D 91.753 291 22 2 2352 2640 151981405 151981115 1.310000e-108 403.0
41 TraesCS7D01G502600 chr2D 84.986 353 40 12 2352 2697 46819780 46820126 2.240000e-91 346.0
42 TraesCS7D01G502600 chr2D 85.165 364 19 5 2352 2694 568410761 568411110 1.040000e-89 340.0
43 TraesCS7D01G502600 chr6A 87.062 371 27 1 2350 2699 578884926 578884556 1.690000e-107 399.0
44 TraesCS7D01G502600 chr6A 85.676 370 29 7 2352 2699 607060287 607060654 4.770000e-98 368.0
45 TraesCS7D01G502600 chr1A 91.724 290 21 3 2354 2640 419036049 419036338 1.690000e-107 399.0
46 TraesCS7D01G502600 chr6B 91.901 284 21 2 2354 2635 8056244 8056527 2.190000e-106 396.0
47 TraesCS7D01G502600 chr6B 94.286 35 2 0 1892 1926 356744220 356744254 2.000000e-03 54.7
48 TraesCS7D01G502600 chr2A 91.065 291 23 3 2352 2640 726416828 726417117 1.020000e-104 390.0
49 TraesCS7D01G502600 chr2A 90.033 301 27 3 2346 2644 719717442 719717741 1.320000e-103 387.0
50 TraesCS7D01G502600 chr2A 84.469 367 33 5 2352 2695 46315909 46316274 1.040000e-89 340.0
51 TraesCS7D01G502600 chr5B 90.000 300 26 4 2345 2640 554517958 554517659 4.740000e-103 385.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G502600 chr7D 608140399 608143427 3028 True 5594.000000 5594 100.000000 1 3029 1 chr7D.!!$R1 3028
1 TraesCS7D01G502600 chr7D 610565305 610567566 2261 False 1191.500000 1236 88.955000 1 2182 2 chr7D.!!$F4 2181
2 TraesCS7D01G502600 chr7D 600262978 600267205 4227 False 648.666667 1365 86.088000 69 2114 3 chr7D.!!$F3 2045
3 TraesCS7D01G502600 chr7B 694307605 694308829 1224 True 1389.000000 1389 87.390000 1021 2248 1 chr7B.!!$R3 1227
4 TraesCS7D01G502600 chr7B 698984843 698987254 2411 True 978.000000 1557 84.980000 69 2282 2 chr7B.!!$R11 2213
5 TraesCS7D01G502600 chr7B 694811274 694817587 6313 False 892.750000 1773 86.747000 69 2282 4 chr7B.!!$F2 2213
6 TraesCS7D01G502600 chr7B 693455829 693458113 2284 True 843.500000 1299 84.511000 69 2009 2 chr7B.!!$R8 1940
7 TraesCS7D01G502600 chr7B 698512910 698515567 2657 True 730.000000 1537 84.920333 69 2983 3 chr7B.!!$R10 2914
8 TraesCS7D01G502600 chr7B 696097701 696099068 1367 True 514.000000 610 84.843500 71 1356 2 chr7B.!!$R9 1285
9 TraesCS7D01G502600 chr4A 661704235 661705913 1678 True 1572.000000 1572 84.195000 605 2259 1 chr4A.!!$R1 1654
10 TraesCS7D01G502600 chr7A 700525274 700530042 4768 False 753.000000 1509 89.821250 1 2128 4 chr7A.!!$F3 2127
11 TraesCS7D01G502600 chr7A 700180201 700182731 2530 True 648.233333 1509 91.886667 302 2128 3 chr7A.!!$R1 1826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 3886 0.741221 GTCGTCCACTCATTGGCTCC 60.741 60.0 0.0 0.0 46.47 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 12003 0.038159 AGCAAACGTCTTCTAGCGCT 60.038 50.0 17.26 17.26 0.0 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 171 5.634118 TCCTGTGATTTCACTCCTTCATTT 58.366 37.500 11.67 0.00 46.55 2.32
243 249 3.896648 AAATGTTACGCACTCACTTGG 57.103 42.857 0.00 0.00 0.00 3.61
271 277 9.558648 AAAGTGATTTTGTTCATTTCAAAAAGC 57.441 25.926 7.67 4.87 44.24 3.51
280 286 6.533012 TGTTCATTTCAAAAAGCGATTTCACA 59.467 30.769 0.00 0.00 0.00 3.58
287 294 5.172951 TCAAAAAGCGATTTCACACATTTCG 59.827 36.000 0.00 0.00 0.00 3.46
295 302 3.341857 TTCACACATTTCGGAAAACCG 57.658 42.857 7.33 0.00 0.00 4.44
661 3349 1.203013 GGGTTTGTAAGGAGGGCAAGT 60.203 52.381 0.00 0.00 0.00 3.16
663 3351 3.079578 GGTTTGTAAGGAGGGCAAGTAC 58.920 50.000 0.00 0.00 0.00 2.73
677 3365 3.929610 GGCAAGTACAGAGAGTGAATGTC 59.070 47.826 0.00 0.00 0.00 3.06
685 3373 9.634021 AGTACAGAGAGTGAATGTCTCATATTA 57.366 33.333 0.00 0.00 42.63 0.98
790 3816 7.461749 AGGAAAGGAATCAAATACAACAGAGA 58.538 34.615 0.00 0.00 0.00 3.10
831 3886 0.741221 GTCGTCCACTCATTGGCTCC 60.741 60.000 0.00 0.00 46.47 4.70
832 3887 1.450312 CGTCCACTCATTGGCTCCC 60.450 63.158 0.00 0.00 46.47 4.30
861 3916 2.159517 GCTAGAAATGTTTGCGGTGAGG 60.160 50.000 0.00 0.00 0.00 3.86
902 3962 4.191015 GGGCCGAATGGGGGAGTC 62.191 72.222 0.00 0.00 35.78 3.36
931 4008 2.745884 CGCACGAATCAGGCCCAA 60.746 61.111 0.00 0.00 0.00 4.12
999 6256 2.417586 CGGTAAGTCCAAAACGAATCCC 59.582 50.000 0.00 0.00 35.57 3.85
1048 6311 1.971357 TCCAACCTCTCTTCAGGTCAC 59.029 52.381 0.00 0.00 46.97 3.67
1105 6379 0.981183 ACCAAACACTATGGAGCCGA 59.019 50.000 0.00 0.00 40.56 5.54
1155 6435 2.579787 GACGACGATGTGGAGGCG 60.580 66.667 0.00 0.00 0.00 5.52
1182 6462 2.482374 GCACGACGCTACTACGGT 59.518 61.111 0.00 0.00 37.77 4.83
1218 6498 1.218763 TCCTCGACGATGACGATCTC 58.781 55.000 0.00 0.00 42.66 2.75
1262 6542 4.444838 CGGCGACATCGGGTTCCA 62.445 66.667 0.00 0.00 40.23 3.53
1289 6569 4.069232 CGACAGCTTCGGGGAGCA 62.069 66.667 1.15 0.00 45.12 4.26
1770 11235 4.295119 GCCGTGACCCGTGACAGT 62.295 66.667 0.00 0.00 33.66 3.55
1776 11241 0.311790 TGACCCGTGACAGTTACGTC 59.688 55.000 15.95 8.90 39.76 4.34
1829 11300 1.740296 CGAAGACCACGGCGGAATT 60.740 57.895 13.24 0.00 38.63 2.17
1833 11304 1.669760 GACCACGGCGGAATTGTCA 60.670 57.895 13.24 0.00 38.63 3.58
1852 11323 1.806542 CAAGTGGACACGCAGCTAATT 59.193 47.619 0.00 0.00 36.20 1.40
1984 11455 4.394712 GCGGCAGCACAGGGTACT 62.395 66.667 3.18 0.00 44.35 2.73
2028 11508 2.358615 GCGTCCACTGGCACATGA 60.359 61.111 0.00 0.00 38.20 3.07
2048 11528 0.388520 TTCTCCTACGACGTCGACGA 60.389 55.000 41.52 28.71 43.02 4.20
2130 11637 5.073192 TCGTGTAGTGATTTTGACGTTTG 57.927 39.130 0.00 0.00 0.00 2.93
2142 11649 1.819288 TGACGTTTGCTTTTGGGAACA 59.181 42.857 0.00 0.00 39.83 3.18
2145 11652 2.232696 ACGTTTGCTTTTGGGAACAGTT 59.767 40.909 0.00 0.00 44.54 3.16
2183 11690 3.411808 TCGTGGACGATTACTGTGC 57.588 52.632 0.00 0.00 44.22 4.57
2184 11691 0.885879 TCGTGGACGATTACTGTGCT 59.114 50.000 0.00 0.00 44.22 4.40
2185 11692 2.086094 TCGTGGACGATTACTGTGCTA 58.914 47.619 0.00 0.00 44.22 3.49
2186 11693 2.159476 TCGTGGACGATTACTGTGCTAC 60.159 50.000 0.00 0.00 44.22 3.58
2300 11863 2.673368 CGTCTACAGAATTTCACCTGGC 59.327 50.000 0.00 0.00 34.85 4.85
2303 11866 2.664402 ACAGAATTTCACCTGGCAGT 57.336 45.000 14.43 0.00 34.85 4.40
2304 11867 3.788227 ACAGAATTTCACCTGGCAGTA 57.212 42.857 14.43 0.00 34.85 2.74
2305 11868 3.412386 ACAGAATTTCACCTGGCAGTAC 58.588 45.455 14.43 0.00 34.85 2.73
2308 11871 2.789409 ATTTCACCTGGCAGTACCTC 57.211 50.000 14.43 0.00 40.22 3.85
2312 11875 0.687354 CACCTGGCAGTACCTCTGTT 59.313 55.000 14.43 0.00 45.23 3.16
2313 11876 0.687354 ACCTGGCAGTACCTCTGTTG 59.313 55.000 14.43 0.00 45.23 3.33
2314 11877 0.687354 CCTGGCAGTACCTCTGTTGT 59.313 55.000 14.43 0.00 45.23 3.32
2331 11908 7.766278 CCTCTGTTGTATGCTATGTCTAGTTTT 59.234 37.037 0.00 0.00 0.00 2.43
2339 11916 9.379791 GTATGCTATGTCTAGTTTTGGTTACTT 57.620 33.333 0.00 0.00 0.00 2.24
2363 11940 4.348863 ACATGGATGTTAGAGCATCTCC 57.651 45.455 6.36 0.00 38.63 3.71
2364 11941 3.713248 ACATGGATGTTAGAGCATCTCCA 59.287 43.478 6.36 0.00 38.63 3.86
2365 11942 4.164796 ACATGGATGTTAGAGCATCTCCAA 59.835 41.667 6.36 0.00 38.63 3.53
2366 11943 5.917799 ACATGGATGTTAGAGCATCTCCAAC 60.918 44.000 6.36 0.00 38.63 3.77
2367 11944 8.270572 ACATGGATGTTAGAGCATCTCCAACA 62.271 42.308 9.51 9.51 43.55 3.33
2368 11945 9.946140 ACATGGATGTTAGAGCATCTCCAACAG 62.946 44.444 11.95 3.26 42.93 3.16
2371 11948 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
2372 11949 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
2373 11950 3.512516 GCATCTCCAACAGCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
2374 11951 2.825836 CATCTCCAACAGCCGCCC 60.826 66.667 0.00 0.00 0.00 6.13
2375 11952 3.329889 ATCTCCAACAGCCGCCCA 61.330 61.111 0.00 0.00 0.00 5.36
2376 11953 2.683465 ATCTCCAACAGCCGCCCAT 61.683 57.895 0.00 0.00 0.00 4.00
2377 11954 2.215451 ATCTCCAACAGCCGCCCATT 62.215 55.000 0.00 0.00 0.00 3.16
2378 11955 2.676121 TCCAACAGCCGCCCATTG 60.676 61.111 0.00 0.00 0.00 2.82
2379 11956 4.440127 CCAACAGCCGCCCATTGC 62.440 66.667 0.00 0.00 0.00 3.56
2380 11957 4.440127 CAACAGCCGCCCATTGCC 62.440 66.667 0.00 0.00 36.24 4.52
2391 11968 3.137459 CATTGCCCGGCGCCTAAA 61.137 61.111 26.68 13.40 36.24 1.85
2392 11969 2.361865 ATTGCCCGGCGCCTAAAA 60.362 55.556 26.68 13.77 36.24 1.52
2393 11970 1.979693 ATTGCCCGGCGCCTAAAAA 60.980 52.632 26.68 14.15 36.24 1.94
2394 11971 1.326951 ATTGCCCGGCGCCTAAAAAT 61.327 50.000 26.68 15.83 36.24 1.82
2395 11972 1.536943 TTGCCCGGCGCCTAAAAATT 61.537 50.000 26.68 0.00 36.24 1.82
2396 11973 1.518352 GCCCGGCGCCTAAAAATTG 60.518 57.895 26.68 5.71 0.00 2.32
2397 11974 1.140804 CCCGGCGCCTAAAAATTGG 59.859 57.895 26.68 15.38 0.00 3.16
2398 11975 1.140804 CCGGCGCCTAAAAATTGGG 59.859 57.895 26.68 11.11 0.00 4.12
2399 11976 1.600511 CCGGCGCCTAAAAATTGGGT 61.601 55.000 26.68 0.00 33.15 4.51
2400 11977 0.245266 CGGCGCCTAAAAATTGGGTT 59.755 50.000 26.68 0.00 33.15 4.11
2401 11978 1.337354 CGGCGCCTAAAAATTGGGTTT 60.337 47.619 26.68 0.00 33.15 3.27
2402 11979 2.094649 CGGCGCCTAAAAATTGGGTTTA 60.095 45.455 26.68 0.00 33.15 2.01
2403 11980 3.255725 GGCGCCTAAAAATTGGGTTTAC 58.744 45.455 22.15 0.00 33.15 2.01
2404 11981 3.306156 GGCGCCTAAAAATTGGGTTTACA 60.306 43.478 22.15 0.00 33.15 2.41
2405 11982 3.924073 GCGCCTAAAAATTGGGTTTACAG 59.076 43.478 0.00 0.00 33.15 2.74
2406 11983 3.924073 CGCCTAAAAATTGGGTTTACAGC 59.076 43.478 0.00 0.00 33.15 4.40
2407 11984 3.924073 GCCTAAAAATTGGGTTTACAGCG 59.076 43.478 0.00 0.00 33.15 5.18
2408 11985 4.559906 GCCTAAAAATTGGGTTTACAGCGT 60.560 41.667 0.00 0.00 33.15 5.07
2409 11986 4.920927 CCTAAAAATTGGGTTTACAGCGTG 59.079 41.667 0.00 0.00 0.00 5.34
2410 11987 2.432206 AAATTGGGTTTACAGCGTGC 57.568 45.000 0.00 0.00 0.00 5.34
2411 11988 1.323412 AATTGGGTTTACAGCGTGCA 58.677 45.000 0.00 0.00 0.00 4.57
2412 11989 1.323412 ATTGGGTTTACAGCGTGCAA 58.677 45.000 0.00 0.00 0.00 4.08
2413 11990 0.665835 TTGGGTTTACAGCGTGCAAG 59.334 50.000 0.00 0.00 0.00 4.01
2414 11991 0.464735 TGGGTTTACAGCGTGCAAGT 60.465 50.000 0.59 0.00 0.00 3.16
2415 11992 1.202663 TGGGTTTACAGCGTGCAAGTA 60.203 47.619 0.59 0.00 0.00 2.24
2416 11993 1.463444 GGGTTTACAGCGTGCAAGTAG 59.537 52.381 0.59 0.00 0.00 2.57
2417 11994 2.140717 GGTTTACAGCGTGCAAGTAGT 58.859 47.619 0.59 3.10 0.00 2.73
2418 11995 2.546789 GGTTTACAGCGTGCAAGTAGTT 59.453 45.455 0.59 0.00 0.00 2.24
2419 11996 3.002965 GGTTTACAGCGTGCAAGTAGTTT 59.997 43.478 0.59 0.00 0.00 2.66
2420 11997 4.496840 GGTTTACAGCGTGCAAGTAGTTTT 60.497 41.667 0.59 0.00 0.00 2.43
2421 11998 4.886247 TTACAGCGTGCAAGTAGTTTTT 57.114 36.364 0.59 0.00 0.00 1.94
2440 12017 3.844577 TTTTAGAGCGCTAGAAGACGT 57.155 42.857 11.50 0.00 0.00 4.34
2441 12018 3.844577 TTTAGAGCGCTAGAAGACGTT 57.155 42.857 11.50 0.00 0.00 3.99
2442 12019 3.844577 TTAGAGCGCTAGAAGACGTTT 57.155 42.857 11.50 0.00 0.00 3.60
2443 12020 1.983972 AGAGCGCTAGAAGACGTTTG 58.016 50.000 11.50 0.00 0.00 2.93
2444 12021 0.367210 GAGCGCTAGAAGACGTTTGC 59.633 55.000 11.50 0.00 0.00 3.68
2445 12022 0.038159 AGCGCTAGAAGACGTTTGCT 60.038 50.000 8.99 0.00 0.00 3.91
2446 12023 0.367210 GCGCTAGAAGACGTTTGCTC 59.633 55.000 0.00 0.00 0.00 4.26
2447 12024 1.983972 CGCTAGAAGACGTTTGCTCT 58.016 50.000 0.00 0.00 0.00 4.09
2448 12025 2.731341 GCGCTAGAAGACGTTTGCTCTA 60.731 50.000 0.00 0.00 0.00 2.43
2449 12026 3.499048 CGCTAGAAGACGTTTGCTCTAA 58.501 45.455 0.00 0.00 0.00 2.10
2450 12027 3.301116 CGCTAGAAGACGTTTGCTCTAAC 59.699 47.826 0.00 0.00 0.00 2.34
2451 12028 4.235360 GCTAGAAGACGTTTGCTCTAACA 58.765 43.478 0.00 0.00 0.00 2.41
2452 12029 4.684703 GCTAGAAGACGTTTGCTCTAACAA 59.315 41.667 0.00 0.00 0.00 2.83
2453 12030 5.164041 GCTAGAAGACGTTTGCTCTAACAAG 60.164 44.000 0.00 0.00 0.00 3.16
2454 12031 3.495001 AGAAGACGTTTGCTCTAACAAGC 59.505 43.478 0.00 0.00 42.82 4.01
2456 12033 2.987535 CGTTTGCTCTAACAAGCGC 58.012 52.632 0.00 0.00 44.96 5.92
2457 12034 0.512952 CGTTTGCTCTAACAAGCGCT 59.487 50.000 2.64 2.64 44.96 5.92
2458 12035 1.722751 CGTTTGCTCTAACAAGCGCTG 60.723 52.381 12.58 8.13 44.96 5.18
2459 12036 1.264288 GTTTGCTCTAACAAGCGCTGT 59.736 47.619 12.58 8.89 45.54 4.40
2460 12037 2.448926 TTGCTCTAACAAGCGCTGTA 57.551 45.000 12.58 2.77 45.54 2.74
2461 12038 2.448926 TGCTCTAACAAGCGCTGTAA 57.551 45.000 12.58 0.00 45.54 2.41
2462 12039 2.761559 TGCTCTAACAAGCGCTGTAAA 58.238 42.857 12.58 2.98 45.54 2.01
2463 12040 3.135225 TGCTCTAACAAGCGCTGTAAAA 58.865 40.909 12.58 0.00 45.54 1.52
2464 12041 3.751175 TGCTCTAACAAGCGCTGTAAAAT 59.249 39.130 12.58 0.00 45.54 1.82
2465 12042 4.932799 TGCTCTAACAAGCGCTGTAAAATA 59.067 37.500 12.58 0.11 45.54 1.40
2466 12043 5.584649 TGCTCTAACAAGCGCTGTAAAATAT 59.415 36.000 12.58 0.00 45.54 1.28
2467 12044 5.904080 GCTCTAACAAGCGCTGTAAAATATG 59.096 40.000 12.58 5.08 37.23 1.78
2468 12045 5.806286 TCTAACAAGCGCTGTAAAATATGC 58.194 37.500 12.58 0.00 37.23 3.14
2469 12046 4.701956 AACAAGCGCTGTAAAATATGCT 57.298 36.364 12.58 0.00 37.23 3.79
2470 12047 4.019919 ACAAGCGCTGTAAAATATGCTG 57.980 40.909 12.58 2.69 36.10 4.41
2471 12048 2.763249 AGCGCTGTAAAATATGCTGC 57.237 45.000 10.39 0.00 35.69 5.25
2474 12051 1.388888 GCTGTAAAATATGCTGCGCG 58.611 50.000 0.00 0.00 0.00 6.86
2475 12052 1.388888 CTGTAAAATATGCTGCGCGC 58.611 50.000 27.26 27.26 39.77 6.86
2476 12053 0.315788 TGTAAAATATGCTGCGCGCG 60.316 50.000 28.44 28.44 43.27 6.86
2477 12054 1.368731 TAAAATATGCTGCGCGCGC 60.369 52.632 45.02 45.02 43.27 6.86
2478 12055 4.943591 AAATATGCTGCGCGCGCG 62.944 61.111 45.73 45.73 45.51 6.86
2492 12069 4.803426 CGCGAGTCCAGCAGTCCC 62.803 72.222 0.00 0.00 34.19 4.46
2493 12070 3.695606 GCGAGTCCAGCAGTCCCA 61.696 66.667 0.00 0.00 34.19 4.37
2494 12071 3.059982 CGAGTCCAGCAGTCCCAA 58.940 61.111 0.00 0.00 0.00 4.12
2495 12072 1.599047 CGAGTCCAGCAGTCCCAAT 59.401 57.895 0.00 0.00 0.00 3.16
2496 12073 0.460987 CGAGTCCAGCAGTCCCAATC 60.461 60.000 0.00 0.00 0.00 2.67
2497 12074 0.615331 GAGTCCAGCAGTCCCAATCA 59.385 55.000 0.00 0.00 0.00 2.57
2498 12075 1.003580 GAGTCCAGCAGTCCCAATCAA 59.996 52.381 0.00 0.00 0.00 2.57
2499 12076 1.004044 AGTCCAGCAGTCCCAATCAAG 59.996 52.381 0.00 0.00 0.00 3.02
2500 12077 0.322816 TCCAGCAGTCCCAATCAAGC 60.323 55.000 0.00 0.00 0.00 4.01
2501 12078 1.651240 CCAGCAGTCCCAATCAAGCG 61.651 60.000 0.00 0.00 0.00 4.68
2502 12079 1.377725 AGCAGTCCCAATCAAGCGG 60.378 57.895 0.00 0.00 0.00 5.52
2503 12080 1.675641 GCAGTCCCAATCAAGCGGT 60.676 57.895 0.00 0.00 0.00 5.68
2504 12081 1.648467 GCAGTCCCAATCAAGCGGTC 61.648 60.000 0.00 0.00 0.00 4.79
2505 12082 1.026718 CAGTCCCAATCAAGCGGTCC 61.027 60.000 0.00 0.00 0.00 4.46
2506 12083 1.749258 GTCCCAATCAAGCGGTCCC 60.749 63.158 0.00 0.00 0.00 4.46
2507 12084 2.227757 TCCCAATCAAGCGGTCCCA 61.228 57.895 0.00 0.00 0.00 4.37
2508 12085 1.076777 CCCAATCAAGCGGTCCCAT 60.077 57.895 0.00 0.00 0.00 4.00
2509 12086 1.103398 CCCAATCAAGCGGTCCCATC 61.103 60.000 0.00 0.00 0.00 3.51
2510 12087 0.107017 CCAATCAAGCGGTCCCATCT 60.107 55.000 0.00 0.00 0.00 2.90
2511 12088 1.019673 CAATCAAGCGGTCCCATCTG 58.980 55.000 0.00 0.00 0.00 2.90
2512 12089 0.749454 AATCAAGCGGTCCCATCTGC 60.749 55.000 0.00 0.00 39.72 4.26
2513 12090 1.913951 ATCAAGCGGTCCCATCTGCA 61.914 55.000 0.00 0.00 41.63 4.41
2514 12091 2.110967 CAAGCGGTCCCATCTGCAG 61.111 63.158 7.63 7.63 41.63 4.41
2515 12092 3.984193 AAGCGGTCCCATCTGCAGC 62.984 63.158 9.47 0.00 41.63 5.25
2516 12093 4.783621 GCGGTCCCATCTGCAGCA 62.784 66.667 9.47 0.00 39.28 4.41
2517 12094 2.513204 CGGTCCCATCTGCAGCAG 60.513 66.667 17.10 17.10 0.00 4.24
2518 12095 2.827642 GGTCCCATCTGCAGCAGC 60.828 66.667 18.43 2.05 42.57 5.25
2519 12096 2.827642 GTCCCATCTGCAGCAGCC 60.828 66.667 18.43 0.00 41.13 4.85
2520 12097 4.119363 TCCCATCTGCAGCAGCCC 62.119 66.667 18.43 0.00 41.13 5.19
2521 12098 4.435970 CCCATCTGCAGCAGCCCA 62.436 66.667 18.43 0.43 41.13 5.36
2522 12099 2.829003 CCATCTGCAGCAGCCCAG 60.829 66.667 18.43 6.86 41.13 4.45
2523 12100 2.271173 CATCTGCAGCAGCCCAGA 59.729 61.111 18.43 13.98 41.81 3.86
2524 12101 1.820056 CATCTGCAGCAGCCCAGAG 60.820 63.158 18.43 0.00 41.00 3.35
2525 12102 2.299429 ATCTGCAGCAGCCCAGAGT 61.299 57.895 18.43 5.23 41.00 3.24
2526 12103 1.849975 ATCTGCAGCAGCCCAGAGTT 61.850 55.000 18.43 1.55 41.00 3.01
2527 12104 1.602888 CTGCAGCAGCCCAGAGTTT 60.603 57.895 10.14 0.00 41.13 2.66
2528 12105 1.863662 CTGCAGCAGCCCAGAGTTTG 61.864 60.000 10.14 0.00 41.13 2.93
2529 12106 2.960170 CAGCAGCCCAGAGTTTGC 59.040 61.111 0.00 0.00 36.83 3.68
2530 12107 1.900016 CAGCAGCCCAGAGTTTGCA 60.900 57.895 0.00 0.00 38.97 4.08
2531 12108 1.602888 AGCAGCCCAGAGTTTGCAG 60.603 57.895 0.00 0.00 38.97 4.41
2532 12109 2.960170 CAGCCCAGAGTTTGCAGC 59.040 61.111 0.00 0.00 0.00 5.25
2533 12110 2.670934 AGCCCAGAGTTTGCAGCG 60.671 61.111 0.00 0.00 31.82 5.18
2534 12111 4.410743 GCCCAGAGTTTGCAGCGC 62.411 66.667 0.00 0.00 0.00 5.92
2535 12112 4.093952 CCCAGAGTTTGCAGCGCG 62.094 66.667 0.00 0.00 0.00 6.86
2536 12113 4.748679 CCAGAGTTTGCAGCGCGC 62.749 66.667 26.66 26.66 42.89 6.86
2553 12130 3.803082 CGCGACCGGACGGACTAA 61.803 66.667 26.63 0.00 38.96 2.24
2554 12131 2.568090 GCGACCGGACGGACTAAA 59.432 61.111 26.63 0.00 38.96 1.85
2555 12132 1.140375 GCGACCGGACGGACTAAAT 59.860 57.895 26.63 0.00 38.96 1.40
2556 12133 0.381801 GCGACCGGACGGACTAAATA 59.618 55.000 26.63 0.00 38.96 1.40
2557 12134 1.000938 GCGACCGGACGGACTAAATAT 60.001 52.381 26.63 0.00 38.96 1.28
2558 12135 2.658285 CGACCGGACGGACTAAATATG 58.342 52.381 18.76 0.00 38.96 1.78
2559 12136 2.401351 GACCGGACGGACTAAATATGC 58.599 52.381 18.80 0.00 38.96 3.14
2560 12137 2.035576 GACCGGACGGACTAAATATGCT 59.964 50.000 18.80 0.00 38.96 3.79
2561 12138 2.223971 ACCGGACGGACTAAATATGCTG 60.224 50.000 18.80 0.00 38.96 4.41
2562 12139 1.792949 CGGACGGACTAAATATGCTGC 59.207 52.381 0.00 0.00 0.00 5.25
2563 12140 1.792949 GGACGGACTAAATATGCTGCG 59.207 52.381 0.00 0.00 0.00 5.18
2564 12141 2.545113 GGACGGACTAAATATGCTGCGA 60.545 50.000 0.00 0.00 0.00 5.10
2565 12142 2.726760 GACGGACTAAATATGCTGCGAG 59.273 50.000 0.00 0.00 0.00 5.03
2566 12143 1.457303 CGGACTAAATATGCTGCGAGC 59.543 52.381 0.00 1.70 42.82 5.03
2567 12144 1.457303 GGACTAAATATGCTGCGAGCG 59.543 52.381 0.00 0.00 46.26 5.03
2568 12145 2.394708 GACTAAATATGCTGCGAGCGA 58.605 47.619 0.00 0.00 46.26 4.93
2569 12146 2.989840 GACTAAATATGCTGCGAGCGAT 59.010 45.455 0.00 0.00 46.26 4.58
2570 12147 2.733552 ACTAAATATGCTGCGAGCGATG 59.266 45.455 0.00 0.00 46.26 3.84
2571 12148 0.236711 AAATATGCTGCGAGCGATGC 59.763 50.000 0.00 0.00 46.26 3.91
2572 12149 1.572085 AATATGCTGCGAGCGATGCC 61.572 55.000 0.00 0.00 46.26 4.40
2573 12150 2.446142 ATATGCTGCGAGCGATGCCT 62.446 55.000 0.00 0.00 46.26 4.75
2574 12151 2.649245 TATGCTGCGAGCGATGCCTT 62.649 55.000 0.00 0.00 46.26 4.35
2575 12152 3.503363 GCTGCGAGCGATGCCTTT 61.503 61.111 0.00 0.00 0.00 3.11
2576 12153 3.044059 GCTGCGAGCGATGCCTTTT 62.044 57.895 0.00 0.00 0.00 2.27
2577 12154 1.503542 CTGCGAGCGATGCCTTTTT 59.496 52.632 0.00 0.00 0.00 1.94
2578 12155 0.726827 CTGCGAGCGATGCCTTTTTA 59.273 50.000 0.00 0.00 0.00 1.52
2579 12156 1.130373 CTGCGAGCGATGCCTTTTTAA 59.870 47.619 0.00 0.00 0.00 1.52
2580 12157 1.742831 TGCGAGCGATGCCTTTTTAAT 59.257 42.857 0.00 0.00 0.00 1.40
2581 12158 2.111756 GCGAGCGATGCCTTTTTAATG 58.888 47.619 0.00 0.00 0.00 1.90
2582 12159 2.111756 CGAGCGATGCCTTTTTAATGC 58.888 47.619 0.00 0.00 0.00 3.56
2583 12160 2.111756 GAGCGATGCCTTTTTAATGCG 58.888 47.619 0.00 0.00 0.00 4.73
2584 12161 0.572125 GCGATGCCTTTTTAATGCGC 59.428 50.000 0.00 0.00 36.35 6.09
2585 12162 0.839477 CGATGCCTTTTTAATGCGCG 59.161 50.000 0.00 0.00 0.00 6.86
2586 12163 0.572125 GATGCCTTTTTAATGCGCGC 59.428 50.000 27.26 27.26 0.00 6.86
2587 12164 1.139226 ATGCCTTTTTAATGCGCGCG 61.139 50.000 28.44 28.44 0.00 6.86
2588 12165 2.986809 CCTTTTTAATGCGCGCGC 59.013 55.556 45.02 45.02 42.35 6.86
2598 12175 4.520846 GCGCGCGCTGCATTAGTT 62.521 61.111 44.38 0.00 46.97 2.24
2599 12176 3.002673 CGCGCGCTGCATTAGTTA 58.997 55.556 30.48 0.00 46.97 2.24
2600 12177 1.564622 CGCGCGCTGCATTAGTTAT 59.435 52.632 30.48 0.00 46.97 1.89
2601 12178 0.781787 CGCGCGCTGCATTAGTTATA 59.218 50.000 30.48 0.00 46.97 0.98
2602 12179 1.201704 CGCGCGCTGCATTAGTTATAG 60.202 52.381 30.48 3.74 46.97 1.31
2603 12180 1.462541 GCGCGCTGCATTAGTTATAGC 60.463 52.381 26.67 0.00 45.45 2.97
2607 12184 1.464997 GCTGCATTAGTTATAGCGGGC 59.535 52.381 0.00 0.00 34.05 6.13
2608 12185 1.726791 CTGCATTAGTTATAGCGGGCG 59.273 52.381 0.00 0.00 0.00 6.13
2609 12186 0.442699 GCATTAGTTATAGCGGGCGC 59.557 55.000 0.00 0.00 42.33 6.53
2610 12187 1.790755 CATTAGTTATAGCGGGCGCA 58.209 50.000 10.83 0.00 44.88 6.09
2611 12188 1.726791 CATTAGTTATAGCGGGCGCAG 59.273 52.381 10.83 3.20 44.88 5.18
2612 12189 0.748450 TTAGTTATAGCGGGCGCAGT 59.252 50.000 10.83 0.00 44.88 4.40
2613 12190 0.748450 TAGTTATAGCGGGCGCAGTT 59.252 50.000 10.83 2.79 44.88 3.16
2614 12191 0.107848 AGTTATAGCGGGCGCAGTTT 60.108 50.000 10.83 0.00 44.88 2.66
2615 12192 0.730840 GTTATAGCGGGCGCAGTTTT 59.269 50.000 10.83 0.00 44.88 2.43
2616 12193 1.131693 GTTATAGCGGGCGCAGTTTTT 59.868 47.619 10.83 0.00 44.88 1.94
2617 12194 0.730265 TATAGCGGGCGCAGTTTTTG 59.270 50.000 10.83 0.00 44.88 2.44
2618 12195 1.241315 ATAGCGGGCGCAGTTTTTGT 61.241 50.000 10.83 0.00 44.88 2.83
2619 12196 2.123988 TAGCGGGCGCAGTTTTTGTG 62.124 55.000 10.83 0.00 44.88 3.33
2625 12202 3.616595 GCAGTTTTTGTGCGGCTG 58.383 55.556 0.00 0.00 0.00 4.85
2626 12203 2.588585 GCAGTTTTTGTGCGGCTGC 61.589 57.895 11.65 11.65 44.24 5.25
2627 12204 1.066257 CAGTTTTTGTGCGGCTGCT 59.934 52.632 20.27 0.00 43.34 4.24
2628 12205 1.066257 AGTTTTTGTGCGGCTGCTG 59.934 52.632 20.27 3.55 43.34 4.41
2629 12206 1.950630 GTTTTTGTGCGGCTGCTGG 60.951 57.895 20.27 0.00 43.34 4.85
2630 12207 2.124060 TTTTTGTGCGGCTGCTGGA 61.124 52.632 20.27 4.18 43.34 3.86
2631 12208 2.074230 TTTTTGTGCGGCTGCTGGAG 62.074 55.000 20.27 0.00 43.34 3.86
2632 12209 2.956799 TTTTGTGCGGCTGCTGGAGA 62.957 55.000 20.27 2.60 43.34 3.71
2633 12210 4.687215 TGTGCGGCTGCTGGAGAC 62.687 66.667 20.27 8.60 43.34 3.36
2634 12211 4.385405 GTGCGGCTGCTGGAGACT 62.385 66.667 20.27 0.00 43.34 3.24
2635 12212 4.074526 TGCGGCTGCTGGAGACTC 62.075 66.667 20.27 0.00 43.34 3.36
2636 12213 4.828925 GCGGCTGCTGGAGACTCC 62.829 72.222 15.13 15.13 38.39 3.85
2637 12214 3.385384 CGGCTGCTGGAGACTCCA 61.385 66.667 22.97 22.97 45.98 3.86
2647 12224 3.297134 TGGAGACTCCAAAGCAGTTTT 57.703 42.857 22.30 0.00 45.00 2.43
2648 12225 3.631250 TGGAGACTCCAAAGCAGTTTTT 58.369 40.909 22.30 0.00 45.00 1.94
2649 12226 4.787551 TGGAGACTCCAAAGCAGTTTTTA 58.212 39.130 22.30 0.00 45.00 1.52
2650 12227 5.385198 TGGAGACTCCAAAGCAGTTTTTAT 58.615 37.500 22.30 0.00 45.00 1.40
2651 12228 6.539173 TGGAGACTCCAAAGCAGTTTTTATA 58.461 36.000 22.30 0.00 45.00 0.98
2652 12229 6.430000 TGGAGACTCCAAAGCAGTTTTTATAC 59.570 38.462 22.30 0.00 45.00 1.47
2653 12230 6.127980 GGAGACTCCAAAGCAGTTTTTATACC 60.128 42.308 17.10 0.00 36.28 2.73
2654 12231 5.411669 AGACTCCAAAGCAGTTTTTATACCG 59.588 40.000 0.00 0.00 0.00 4.02
2655 12232 4.082949 ACTCCAAAGCAGTTTTTATACCGC 60.083 41.667 0.00 0.00 0.00 5.68
2656 12233 3.120130 TCCAAAGCAGTTTTTATACCGCG 60.120 43.478 0.00 0.00 0.00 6.46
2657 12234 2.537639 AAGCAGTTTTTATACCGCGC 57.462 45.000 0.00 0.00 0.00 6.86
2658 12235 0.372334 AGCAGTTTTTATACCGCGCG 59.628 50.000 25.67 25.67 0.00 6.86
2659 12236 0.095762 GCAGTTTTTATACCGCGCGT 59.904 50.000 29.95 18.85 0.00 6.01
2660 12237 1.849348 GCAGTTTTTATACCGCGCGTC 60.849 52.381 29.95 7.02 0.00 5.19
2661 12238 0.641783 AGTTTTTATACCGCGCGTCG 59.358 50.000 29.95 17.12 38.08 5.12
2682 12259 4.653806 GCTTATATAGCGCTTCTGTTGG 57.346 45.455 18.68 2.18 40.71 3.77
2683 12260 4.307432 GCTTATATAGCGCTTCTGTTGGA 58.693 43.478 18.68 0.00 40.71 3.53
2684 12261 4.387256 GCTTATATAGCGCTTCTGTTGGAG 59.613 45.833 18.68 5.30 40.71 3.86
2685 12262 5.773575 CTTATATAGCGCTTCTGTTGGAGA 58.226 41.667 18.68 0.00 0.00 3.71
2686 12263 4.881019 ATATAGCGCTTCTGTTGGAGAT 57.119 40.909 18.68 0.28 0.00 2.75
2687 12264 2.299993 TAGCGCTTCTGTTGGAGATG 57.700 50.000 18.68 0.00 0.00 2.90
2688 12265 1.023513 AGCGCTTCTGTTGGAGATGC 61.024 55.000 2.64 0.00 44.71 3.91
2689 12266 1.023513 GCGCTTCTGTTGGAGATGCT 61.024 55.000 0.00 0.00 45.55 3.79
2690 12267 1.005340 CGCTTCTGTTGGAGATGCTC 58.995 55.000 0.00 0.00 45.55 4.26
2691 12268 1.405256 CGCTTCTGTTGGAGATGCTCT 60.405 52.381 0.00 0.00 45.55 4.09
2692 12269 2.709213 GCTTCTGTTGGAGATGCTCTT 58.291 47.619 0.00 0.00 44.73 2.85
2693 12270 3.677148 CGCTTCTGTTGGAGATGCTCTTA 60.677 47.826 0.00 0.00 45.55 2.10
2694 12271 3.870419 GCTTCTGTTGGAGATGCTCTTAG 59.130 47.826 0.00 0.00 44.73 2.18
2714 12291 2.039084 AGTGCTCCCTTCCTAACAACTG 59.961 50.000 0.00 0.00 0.00 3.16
2716 12293 1.340114 GCTCCCTTCCTAACAACTGGG 60.340 57.143 0.00 0.00 36.14 4.45
2718 12295 1.702957 TCCCTTCCTAACAACTGGGTG 59.297 52.381 0.00 0.00 36.23 4.61
2719 12296 1.423921 CCCTTCCTAACAACTGGGTGT 59.576 52.381 0.00 0.00 0.00 4.16
2720 12297 2.552373 CCCTTCCTAACAACTGGGTGTC 60.552 54.545 0.00 0.00 0.00 3.67
2721 12298 2.413837 CTTCCTAACAACTGGGTGTCG 58.586 52.381 0.00 0.00 0.00 4.35
2722 12299 0.682852 TCCTAACAACTGGGTGTCGG 59.317 55.000 0.00 0.00 0.00 4.79
2723 12300 0.395312 CCTAACAACTGGGTGTCGGT 59.605 55.000 0.00 0.00 36.31 4.69
2724 12301 1.607251 CCTAACAACTGGGTGTCGGTC 60.607 57.143 0.00 0.00 32.92 4.79
2725 12302 1.069513 CTAACAACTGGGTGTCGGTCA 59.930 52.381 0.00 0.00 32.92 4.02
2726 12303 0.472471 AACAACTGGGTGTCGGTCAT 59.528 50.000 0.00 0.00 32.92 3.06
2727 12304 0.034896 ACAACTGGGTGTCGGTCATC 59.965 55.000 0.00 0.00 32.92 2.92
2728 12305 0.034756 CAACTGGGTGTCGGTCATCA 59.965 55.000 0.00 0.00 32.92 3.07
2743 12320 3.614092 GTCATCAGATGAGCTTTGGGAA 58.386 45.455 13.78 0.00 40.53 3.97
2744 12321 3.376546 GTCATCAGATGAGCTTTGGGAAC 59.623 47.826 13.78 0.00 40.53 3.62
2748 12325 3.072915 TCAGATGAGCTTTGGGAACTCAA 59.927 43.478 0.00 0.00 43.23 3.02
2750 12327 4.279169 CAGATGAGCTTTGGGAACTCAAAA 59.721 41.667 1.57 0.00 43.23 2.44
2753 12330 3.243839 TGAGCTTTGGGAACTCAAAATGC 60.244 43.478 1.57 2.96 37.49 3.56
2757 12334 2.380064 TGGGAACTCAAAATGCTGGT 57.620 45.000 0.00 0.00 0.00 4.00
2771 12357 1.009829 GCTGGTGGTTTCATAGCTCG 58.990 55.000 0.00 0.00 34.93 5.03
2782 12368 3.500558 TCATAGCTCGCAGATAGATGC 57.499 47.619 0.00 0.00 42.95 3.91
2812 12399 1.674611 CGGACAAGATGACGCGTGAC 61.675 60.000 20.70 2.93 0.00 3.67
2863 12450 6.920758 GCCATGTGTATGTTGTTCTTGTTTTA 59.079 34.615 0.00 0.00 32.21 1.52
2903 12490 4.152759 CGGTTACCGTAACATCAATGTTGT 59.847 41.667 16.53 9.69 44.46 3.32
2905 12492 7.317698 CGGTTACCGTAACATCAATGTTGTTG 61.318 42.308 16.53 5.90 44.46 3.33
2912 12499 4.589216 ACATCAATGTTGTTGTTCCCTG 57.411 40.909 4.13 0.00 37.73 4.45
2924 12511 1.771854 TGTTCCCTGCCTAACTGAACA 59.228 47.619 0.00 0.00 41.99 3.18
2926 12513 2.749621 GTTCCCTGCCTAACTGAACATG 59.250 50.000 0.00 0.00 36.28 3.21
2959 12554 3.131709 ACAGTTCCAGTCAATCTGTGG 57.868 47.619 0.00 0.00 42.19 4.17
2972 12567 4.346127 TCAATCTGTGGCTGTATATCTGCT 59.654 41.667 0.00 0.00 40.19 4.24
2978 12573 4.280929 TGTGGCTGTATATCTGCTATTCGT 59.719 41.667 0.00 0.00 40.19 3.85
2982 12577 7.384115 GTGGCTGTATATCTGCTATTCGTTTTA 59.616 37.037 0.00 0.00 40.19 1.52
2984 12579 8.936864 GGCTGTATATCTGCTATTCGTTTTAAT 58.063 33.333 0.00 0.00 40.19 1.40
2990 12585 6.260870 TCTGCTATTCGTTTTAATTTGCCA 57.739 33.333 0.00 0.00 0.00 4.92
2991 12586 6.321717 TCTGCTATTCGTTTTAATTTGCCAG 58.678 36.000 0.00 0.00 0.00 4.85
2992 12587 6.019779 TGCTATTCGTTTTAATTTGCCAGT 57.980 33.333 0.00 0.00 0.00 4.00
2993 12588 7.119992 TCTGCTATTCGTTTTAATTTGCCAGTA 59.880 33.333 0.00 0.00 0.00 2.74
2994 12589 7.024768 TGCTATTCGTTTTAATTTGCCAGTAC 58.975 34.615 0.00 0.00 0.00 2.73
2995 12590 7.024768 GCTATTCGTTTTAATTTGCCAGTACA 58.975 34.615 0.00 0.00 0.00 2.90
2996 12591 7.539366 GCTATTCGTTTTAATTTGCCAGTACAA 59.461 33.333 0.00 0.00 0.00 2.41
2997 12592 9.400638 CTATTCGTTTTAATTTGCCAGTACAAA 57.599 29.630 0.00 0.00 43.27 2.83
2999 12594 7.630470 TCGTTTTAATTTGCCAGTACAAATG 57.370 32.000 3.47 0.00 46.80 2.32
3000 12595 6.144724 TCGTTTTAATTTGCCAGTACAAATGC 59.855 34.615 3.47 0.00 46.80 3.56
3001 12596 6.145371 CGTTTTAATTTGCCAGTACAAATGCT 59.855 34.615 3.47 0.00 46.80 3.79
3002 12597 7.290118 GTTTTAATTTGCCAGTACAAATGCTG 58.710 34.615 3.47 0.00 46.80 4.41
3003 12598 2.437200 TTTGCCAGTACAAATGCTGC 57.563 45.000 0.00 0.00 37.24 5.25
3004 12599 1.326328 TTGCCAGTACAAATGCTGCA 58.674 45.000 4.13 4.13 37.24 4.41
3005 12600 0.597568 TGCCAGTACAAATGCTGCAC 59.402 50.000 3.57 0.00 37.24 4.57
3006 12601 0.109132 GCCAGTACAAATGCTGCACC 60.109 55.000 3.57 0.00 37.24 5.01
3007 12602 0.527565 CCAGTACAAATGCTGCACCC 59.472 55.000 3.57 0.00 37.24 4.61
3008 12603 0.168788 CAGTACAAATGCTGCACCCG 59.831 55.000 3.57 0.00 31.35 5.28
3009 12604 0.250727 AGTACAAATGCTGCACCCGT 60.251 50.000 3.57 4.63 0.00 5.28
3010 12605 0.596082 GTACAAATGCTGCACCCGTT 59.404 50.000 3.57 0.00 0.00 4.44
3011 12606 1.807742 GTACAAATGCTGCACCCGTTA 59.192 47.619 3.57 0.00 0.00 3.18
3012 12607 1.544724 ACAAATGCTGCACCCGTTAT 58.455 45.000 3.57 0.00 0.00 1.89
3013 12608 1.892474 ACAAATGCTGCACCCGTTATT 59.108 42.857 3.57 0.00 0.00 1.40
3014 12609 2.298729 ACAAATGCTGCACCCGTTATTT 59.701 40.909 3.57 0.00 0.00 1.40
3015 12610 3.244044 ACAAATGCTGCACCCGTTATTTT 60.244 39.130 3.57 0.00 0.00 1.82
3016 12611 2.939460 ATGCTGCACCCGTTATTTTC 57.061 45.000 3.57 0.00 0.00 2.29
3017 12612 1.610363 TGCTGCACCCGTTATTTTCA 58.390 45.000 0.00 0.00 0.00 2.69
3018 12613 1.957177 TGCTGCACCCGTTATTTTCAA 59.043 42.857 0.00 0.00 0.00 2.69
3019 12614 2.287909 TGCTGCACCCGTTATTTTCAAC 60.288 45.455 0.00 0.00 0.00 3.18
3020 12615 2.287909 GCTGCACCCGTTATTTTCAACA 60.288 45.455 0.00 0.00 0.00 3.33
3021 12616 3.613910 GCTGCACCCGTTATTTTCAACAT 60.614 43.478 0.00 0.00 0.00 2.71
3022 12617 4.380023 GCTGCACCCGTTATTTTCAACATA 60.380 41.667 0.00 0.00 0.00 2.29
3023 12618 5.678616 GCTGCACCCGTTATTTTCAACATAT 60.679 40.000 0.00 0.00 0.00 1.78
3024 12619 6.274157 TGCACCCGTTATTTTCAACATATT 57.726 33.333 0.00 0.00 0.00 1.28
3025 12620 6.692486 TGCACCCGTTATTTTCAACATATTT 58.308 32.000 0.00 0.00 0.00 1.40
3026 12621 7.155328 TGCACCCGTTATTTTCAACATATTTT 58.845 30.769 0.00 0.00 0.00 1.82
3027 12622 8.304596 TGCACCCGTTATTTTCAACATATTTTA 58.695 29.630 0.00 0.00 0.00 1.52
3028 12623 8.588789 GCACCCGTTATTTTCAACATATTTTAC 58.411 33.333 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
257 263 6.533012 TGTGTGAAATCGCTTTTTGAAATGAA 59.467 30.769 0.00 0.00 0.00 2.57
271 277 4.381566 GGTTTTCCGAAATGTGTGAAATCG 59.618 41.667 0.00 0.00 0.00 3.34
287 294 6.801862 CAGAATTGAGTGAAATACGGTTTTCC 59.198 38.462 9.10 2.83 35.23 3.13
295 302 7.173218 TCAGTGTTCCAGAATTGAGTGAAATAC 59.827 37.037 0.00 0.00 0.00 1.89
650 3338 1.077993 ACTCTCTGTACTTGCCCTCCT 59.922 52.381 0.00 0.00 0.00 3.69
790 3816 5.202004 ACACCTCGTGAAGTATCCTAATCT 58.798 41.667 0.00 0.00 36.96 2.40
861 3916 1.059264 GACGTAGCAATTCAGTCACGC 59.941 52.381 0.00 0.00 32.90 5.34
973 4140 1.190763 CGTTTTGGACTTACCGACGTG 59.809 52.381 0.00 0.00 42.61 4.49
999 6256 0.886938 TACGTGTTGGTGCACCCATG 60.887 55.000 32.62 27.94 44.74 3.66
1048 6311 0.803768 CACACGATTGAGAGGAGCCG 60.804 60.000 0.00 0.00 0.00 5.52
1093 6367 4.570663 GCGCGTCGGCTCCATAGT 62.571 66.667 8.43 0.00 36.88 2.12
1262 6542 2.360600 AGCTGTCGCTCTCGTCCT 60.361 61.111 0.00 0.00 45.15 3.85
1757 11222 0.311790 GACGTAACTGTCACGGGTCA 59.688 55.000 8.54 0.00 43.59 4.02
1776 11241 0.109919 TGTCGTCTCCGAACATGTCG 60.110 55.000 0.00 4.73 46.26 4.35
1819 11290 1.234615 CCACTTGACAATTCCGCCGT 61.235 55.000 0.00 0.00 0.00 5.68
1833 11304 2.076863 GAATTAGCTGCGTGTCCACTT 58.923 47.619 0.00 0.00 0.00 3.16
1852 11323 2.357881 CGCTGCAGGCTGTTCAGA 60.358 61.111 21.61 0.40 39.13 3.27
1977 11448 2.483889 GGCGTCGTAGTAGTAGTACCCT 60.484 54.545 9.17 0.00 0.00 4.34
1981 11452 1.209128 GCGGCGTCGTAGTAGTAGTA 58.791 55.000 12.58 0.00 38.89 1.82
1982 11453 1.756375 CGCGGCGTCGTAGTAGTAGT 61.756 60.000 15.36 0.00 38.89 2.73
1983 11454 1.083784 CGCGGCGTCGTAGTAGTAG 60.084 63.158 15.36 0.00 38.89 2.57
1984 11455 1.752501 GACGCGGCGTCGTAGTAGTA 61.753 60.000 35.50 0.00 46.56 1.82
2028 11508 0.649475 CGTCGACGTCGTAGGAGAAT 59.351 55.000 34.40 0.00 40.80 2.40
2048 11528 0.882474 GTGAGTACTGCTGGTCTCGT 59.118 55.000 0.00 0.00 0.00 4.18
2130 11637 3.735746 CGAAATCAACTGTTCCCAAAAGC 59.264 43.478 0.00 0.00 0.00 3.51
2142 11649 5.368989 AGAGTTCAAGGTTCGAAATCAACT 58.631 37.500 0.00 4.27 39.34 3.16
2145 11652 3.987868 CGAGAGTTCAAGGTTCGAAATCA 59.012 43.478 0.00 0.00 39.34 2.57
2181 11688 2.230025 GAGAGCTCAGACAACAGTAGCA 59.770 50.000 17.77 0.00 35.63 3.49
2182 11689 2.491693 AGAGAGCTCAGACAACAGTAGC 59.508 50.000 17.77 0.00 0.00 3.58
2183 11690 3.505680 ACAGAGAGCTCAGACAACAGTAG 59.494 47.826 17.77 0.00 0.00 2.57
2184 11691 3.491342 ACAGAGAGCTCAGACAACAGTA 58.509 45.455 17.77 0.00 0.00 2.74
2185 11692 2.295909 GACAGAGAGCTCAGACAACAGT 59.704 50.000 17.77 2.51 0.00 3.55
2186 11693 2.557924 AGACAGAGAGCTCAGACAACAG 59.442 50.000 17.77 0.00 0.00 3.16
2303 11866 7.061054 ACTAGACATAGCATACAACAGAGGTA 58.939 38.462 0.00 0.00 31.66 3.08
2304 11867 5.894393 ACTAGACATAGCATACAACAGAGGT 59.106 40.000 0.00 0.00 31.66 3.85
2305 11868 6.398234 ACTAGACATAGCATACAACAGAGG 57.602 41.667 0.00 0.00 31.66 3.69
2308 11871 7.334421 ACCAAAACTAGACATAGCATACAACAG 59.666 37.037 0.00 0.00 31.66 3.16
2312 11875 8.537016 AGTAACCAAAACTAGACATAGCATACA 58.463 33.333 0.00 0.00 31.66 2.29
2313 11876 8.943909 AGTAACCAAAACTAGACATAGCATAC 57.056 34.615 0.00 0.00 31.66 2.39
2314 11877 9.953565 AAAGTAACCAAAACTAGACATAGCATA 57.046 29.630 0.00 0.00 31.66 3.14
2354 11931 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
2355 11932 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
2356 11933 3.512516 GGCGGCTGTTGGAGATGC 61.513 66.667 0.00 0.00 0.00 3.91
2357 11934 2.825836 GGGCGGCTGTTGGAGATG 60.826 66.667 9.56 0.00 0.00 2.90
2358 11935 2.215451 AATGGGCGGCTGTTGGAGAT 62.215 55.000 9.56 0.00 0.00 2.75
2359 11936 2.905996 AATGGGCGGCTGTTGGAGA 61.906 57.895 9.56 0.00 0.00 3.71
2360 11937 2.361610 AATGGGCGGCTGTTGGAG 60.362 61.111 9.56 0.00 0.00 3.86
2361 11938 2.676121 CAATGGGCGGCTGTTGGA 60.676 61.111 9.56 0.00 0.00 3.53
2362 11939 4.440127 GCAATGGGCGGCTGTTGG 62.440 66.667 21.38 6.46 0.00 3.77
2363 11940 4.440127 GGCAATGGGCGGCTGTTG 62.440 66.667 9.56 14.86 46.16 3.33
2374 11951 2.219325 TTTTTAGGCGCCGGGCAATG 62.219 55.000 23.20 3.70 46.16 2.82
2375 11952 1.326951 ATTTTTAGGCGCCGGGCAAT 61.327 50.000 23.20 15.40 46.16 3.56
2376 11953 1.536943 AATTTTTAGGCGCCGGGCAA 61.537 50.000 23.20 13.66 46.16 4.52
2377 11954 1.979693 AATTTTTAGGCGCCGGGCA 60.980 52.632 23.20 5.74 46.16 5.36
2378 11955 1.518352 CAATTTTTAGGCGCCGGGC 60.518 57.895 23.20 9.54 42.51 6.13
2379 11956 1.140804 CCAATTTTTAGGCGCCGGG 59.859 57.895 23.20 9.73 0.00 5.73
2380 11957 1.140804 CCCAATTTTTAGGCGCCGG 59.859 57.895 23.20 13.52 0.00 6.13
2381 11958 0.245266 AACCCAATTTTTAGGCGCCG 59.755 50.000 23.20 4.76 0.00 6.46
2382 11959 2.465860 AAACCCAATTTTTAGGCGCC 57.534 45.000 21.89 21.89 0.00 6.53
2383 11960 3.915536 TGTAAACCCAATTTTTAGGCGC 58.084 40.909 0.00 0.00 0.00 6.53
2384 11961 3.924073 GCTGTAAACCCAATTTTTAGGCG 59.076 43.478 0.00 0.00 0.00 5.52
2385 11962 3.924073 CGCTGTAAACCCAATTTTTAGGC 59.076 43.478 0.00 0.00 0.00 3.93
2386 11963 4.920927 CACGCTGTAAACCCAATTTTTAGG 59.079 41.667 0.00 0.00 0.00 2.69
2387 11964 4.384547 GCACGCTGTAAACCCAATTTTTAG 59.615 41.667 0.00 0.00 0.00 1.85
2388 11965 4.202121 TGCACGCTGTAAACCCAATTTTTA 60.202 37.500 0.00 0.00 0.00 1.52
2389 11966 3.127589 GCACGCTGTAAACCCAATTTTT 58.872 40.909 0.00 0.00 0.00 1.94
2390 11967 2.101582 TGCACGCTGTAAACCCAATTTT 59.898 40.909 0.00 0.00 0.00 1.82
2391 11968 1.683917 TGCACGCTGTAAACCCAATTT 59.316 42.857 0.00 0.00 0.00 1.82
2392 11969 1.323412 TGCACGCTGTAAACCCAATT 58.677 45.000 0.00 0.00 0.00 2.32
2393 11970 1.269448 CTTGCACGCTGTAAACCCAAT 59.731 47.619 0.00 0.00 0.00 3.16
2394 11971 0.665835 CTTGCACGCTGTAAACCCAA 59.334 50.000 0.00 0.00 0.00 4.12
2395 11972 0.464735 ACTTGCACGCTGTAAACCCA 60.465 50.000 0.00 0.00 0.00 4.51
2396 11973 1.463444 CTACTTGCACGCTGTAAACCC 59.537 52.381 0.00 0.00 0.00 4.11
2397 11974 2.140717 ACTACTTGCACGCTGTAAACC 58.859 47.619 0.00 0.00 0.00 3.27
2398 11975 3.872560 AACTACTTGCACGCTGTAAAC 57.127 42.857 0.00 0.00 0.00 2.01
2399 11976 4.886247 AAAACTACTTGCACGCTGTAAA 57.114 36.364 0.00 0.00 0.00 2.01
2400 11977 4.886247 AAAAACTACTTGCACGCTGTAA 57.114 36.364 0.00 0.00 0.00 2.41
2419 11996 4.170292 ACGTCTTCTAGCGCTCTAAAAA 57.830 40.909 16.34 1.11 0.00 1.94
2420 11997 3.844577 ACGTCTTCTAGCGCTCTAAAA 57.155 42.857 16.34 3.12 0.00 1.52
2421 11998 3.844577 AACGTCTTCTAGCGCTCTAAA 57.155 42.857 16.34 5.98 0.00 1.85
2422 11999 3.499048 CAAACGTCTTCTAGCGCTCTAA 58.501 45.455 16.34 8.88 0.00 2.10
2423 12000 2.731341 GCAAACGTCTTCTAGCGCTCTA 60.731 50.000 16.34 0.00 0.00 2.43
2424 12001 1.983972 CAAACGTCTTCTAGCGCTCT 58.016 50.000 16.34 0.00 0.00 4.09
2425 12002 0.367210 GCAAACGTCTTCTAGCGCTC 59.633 55.000 16.34 0.00 0.00 5.03
2426 12003 0.038159 AGCAAACGTCTTCTAGCGCT 60.038 50.000 17.26 17.26 0.00 5.92
2427 12004 0.367210 GAGCAAACGTCTTCTAGCGC 59.633 55.000 0.00 0.00 0.00 5.92
2428 12005 1.983972 AGAGCAAACGTCTTCTAGCG 58.016 50.000 0.00 0.00 0.00 4.26
2429 12006 4.235360 TGTTAGAGCAAACGTCTTCTAGC 58.765 43.478 0.00 0.00 31.76 3.42
2430 12007 5.164041 GCTTGTTAGAGCAAACGTCTTCTAG 60.164 44.000 0.00 0.00 42.25 2.43
2431 12008 4.684703 GCTTGTTAGAGCAAACGTCTTCTA 59.315 41.667 0.00 0.00 42.25 2.10
2432 12009 3.495001 GCTTGTTAGAGCAAACGTCTTCT 59.505 43.478 0.00 0.00 42.25 2.85
2433 12010 3.661936 CGCTTGTTAGAGCAAACGTCTTC 60.662 47.826 0.00 0.00 42.83 2.87
2434 12011 2.221055 CGCTTGTTAGAGCAAACGTCTT 59.779 45.455 0.00 0.00 42.83 3.01
2435 12012 1.792949 CGCTTGTTAGAGCAAACGTCT 59.207 47.619 0.00 0.00 42.83 4.18
2436 12013 1.721804 GCGCTTGTTAGAGCAAACGTC 60.722 52.381 0.00 0.00 45.34 4.34
2437 12014 0.234884 GCGCTTGTTAGAGCAAACGT 59.765 50.000 0.00 0.00 45.34 3.99
2438 12015 2.987535 GCGCTTGTTAGAGCAAACG 58.012 52.632 0.00 0.00 45.34 3.60
2443 12020 3.806316 TTTTACAGCGCTTGTTAGAGC 57.194 42.857 7.50 0.00 46.24 4.09
2444 12021 5.904080 GCATATTTTACAGCGCTTGTTAGAG 59.096 40.000 7.50 0.00 41.29 2.43
2445 12022 5.584649 AGCATATTTTACAGCGCTTGTTAGA 59.415 36.000 7.50 0.00 41.29 2.10
2446 12023 5.678483 CAGCATATTTTACAGCGCTTGTTAG 59.322 40.000 7.50 0.00 41.29 2.34
2447 12024 5.568482 CAGCATATTTTACAGCGCTTGTTA 58.432 37.500 7.50 0.29 41.29 2.41
2448 12025 4.414852 CAGCATATTTTACAGCGCTTGTT 58.585 39.130 7.50 0.00 41.29 2.83
2449 12026 3.731867 GCAGCATATTTTACAGCGCTTGT 60.732 43.478 7.50 12.61 43.96 3.16
2450 12027 2.785477 GCAGCATATTTTACAGCGCTTG 59.215 45.455 7.50 6.20 0.00 4.01
2451 12028 2.539547 CGCAGCATATTTTACAGCGCTT 60.540 45.455 7.50 1.63 37.20 4.68
2452 12029 1.003545 CGCAGCATATTTTACAGCGCT 60.004 47.619 2.64 2.64 37.20 5.92
2453 12030 1.388888 CGCAGCATATTTTACAGCGC 58.611 50.000 0.00 0.00 37.20 5.92
2475 12052 4.803426 GGGACTGCTGGACTCGCG 62.803 72.222 0.00 0.00 0.00 5.87
2476 12053 2.527951 ATTGGGACTGCTGGACTCGC 62.528 60.000 0.00 0.00 0.00 5.03
2477 12054 0.460987 GATTGGGACTGCTGGACTCG 60.461 60.000 0.00 0.00 0.00 4.18
2478 12055 0.615331 TGATTGGGACTGCTGGACTC 59.385 55.000 0.00 0.00 0.00 3.36
2479 12056 1.004044 CTTGATTGGGACTGCTGGACT 59.996 52.381 0.00 0.00 0.00 3.85
2480 12057 1.457346 CTTGATTGGGACTGCTGGAC 58.543 55.000 0.00 0.00 0.00 4.02
2481 12058 0.322816 GCTTGATTGGGACTGCTGGA 60.323 55.000 0.00 0.00 0.00 3.86
2482 12059 1.651240 CGCTTGATTGGGACTGCTGG 61.651 60.000 0.00 0.00 0.00 4.85
2483 12060 1.651240 CCGCTTGATTGGGACTGCTG 61.651 60.000 0.00 0.00 0.00 4.41
2484 12061 1.377725 CCGCTTGATTGGGACTGCT 60.378 57.895 0.00 0.00 0.00 4.24
2485 12062 1.648467 GACCGCTTGATTGGGACTGC 61.648 60.000 0.00 0.00 0.00 4.40
2486 12063 1.026718 GGACCGCTTGATTGGGACTG 61.027 60.000 0.00 0.00 0.00 3.51
2487 12064 1.299976 GGACCGCTTGATTGGGACT 59.700 57.895 0.00 0.00 0.00 3.85
2488 12065 1.749258 GGGACCGCTTGATTGGGAC 60.749 63.158 0.00 0.00 0.00 4.46
2489 12066 1.570857 ATGGGACCGCTTGATTGGGA 61.571 55.000 0.00 0.00 0.00 4.37
2490 12067 1.076777 ATGGGACCGCTTGATTGGG 60.077 57.895 0.00 0.00 0.00 4.12
2491 12068 0.107017 AGATGGGACCGCTTGATTGG 60.107 55.000 0.00 0.00 0.00 3.16
2492 12069 1.019673 CAGATGGGACCGCTTGATTG 58.980 55.000 0.00 0.00 0.00 2.67
2493 12070 0.749454 GCAGATGGGACCGCTTGATT 60.749 55.000 0.00 0.00 0.00 2.57
2494 12071 1.153086 GCAGATGGGACCGCTTGAT 60.153 57.895 0.00 0.00 0.00 2.57
2495 12072 2.268920 GCAGATGGGACCGCTTGA 59.731 61.111 0.00 0.00 0.00 3.02
2496 12073 2.046023 TGCAGATGGGACCGCTTG 60.046 61.111 0.00 0.00 0.00 4.01
2497 12074 2.270205 CTGCAGATGGGACCGCTT 59.730 61.111 8.42 0.00 0.00 4.68
2498 12075 4.479993 GCTGCAGATGGGACCGCT 62.480 66.667 20.43 0.00 0.00 5.52
2499 12076 4.783621 TGCTGCAGATGGGACCGC 62.784 66.667 20.43 0.00 0.00 5.68
2500 12077 2.513204 CTGCTGCAGATGGGACCG 60.513 66.667 24.88 0.00 32.44 4.79
2501 12078 2.827642 GCTGCTGCAGATGGGACC 60.828 66.667 32.30 9.52 39.41 4.46
2502 12079 2.827642 GGCTGCTGCAGATGGGAC 60.828 66.667 32.30 13.44 41.91 4.46
2503 12080 4.119363 GGGCTGCTGCAGATGGGA 62.119 66.667 32.30 0.00 41.91 4.37
2504 12081 4.435970 TGGGCTGCTGCAGATGGG 62.436 66.667 32.30 7.68 41.91 4.00
2505 12082 2.829003 CTGGGCTGCTGCAGATGG 60.829 66.667 32.30 14.48 41.91 3.51
2506 12083 1.820056 CTCTGGGCTGCTGCAGATG 60.820 63.158 32.30 17.23 41.91 2.90
2507 12084 1.849975 AACTCTGGGCTGCTGCAGAT 61.850 55.000 32.30 5.69 41.91 2.90
2508 12085 2.060567 AAACTCTGGGCTGCTGCAGA 62.061 55.000 32.30 11.47 41.91 4.26
2509 12086 1.602888 AAACTCTGGGCTGCTGCAG 60.603 57.895 24.80 24.80 41.91 4.41
2510 12087 1.900016 CAAACTCTGGGCTGCTGCA 60.900 57.895 17.89 0.88 41.91 4.41
2511 12088 2.960170 CAAACTCTGGGCTGCTGC 59.040 61.111 7.10 7.10 38.76 5.25
2512 12089 1.863662 CTGCAAACTCTGGGCTGCTG 61.864 60.000 0.00 0.27 35.78 4.41
2513 12090 1.602888 CTGCAAACTCTGGGCTGCT 60.603 57.895 0.00 0.00 35.78 4.24
2514 12091 2.960170 CTGCAAACTCTGGGCTGC 59.040 61.111 0.00 0.00 35.32 5.25
2515 12092 2.960170 GCTGCAAACTCTGGGCTG 59.040 61.111 0.00 0.00 0.00 4.85
2516 12093 2.670934 CGCTGCAAACTCTGGGCT 60.671 61.111 0.00 0.00 0.00 5.19
2517 12094 4.410743 GCGCTGCAAACTCTGGGC 62.411 66.667 0.00 0.00 36.90 5.36
2518 12095 4.093952 CGCGCTGCAAACTCTGGG 62.094 66.667 5.56 0.00 0.00 4.45
2519 12096 4.748679 GCGCGCTGCAAACTCTGG 62.749 66.667 26.67 0.00 45.45 3.86
2536 12113 2.603135 ATTTAGTCCGTCCGGTCGCG 62.603 60.000 15.94 11.68 36.47 5.87
2537 12114 0.381801 TATTTAGTCCGTCCGGTCGC 59.618 55.000 15.94 3.07 36.47 5.19
2538 12115 2.658285 CATATTTAGTCCGTCCGGTCG 58.342 52.381 14.43 14.43 36.47 4.79
2539 12116 2.035576 AGCATATTTAGTCCGTCCGGTC 59.964 50.000 0.00 0.00 36.47 4.79
2540 12117 2.037144 AGCATATTTAGTCCGTCCGGT 58.963 47.619 0.00 0.00 36.47 5.28
2541 12118 2.404215 CAGCATATTTAGTCCGTCCGG 58.596 52.381 0.00 0.00 0.00 5.14
2542 12119 1.792949 GCAGCATATTTAGTCCGTCCG 59.207 52.381 0.00 0.00 0.00 4.79
2543 12120 1.792949 CGCAGCATATTTAGTCCGTCC 59.207 52.381 0.00 0.00 0.00 4.79
2544 12121 2.726760 CTCGCAGCATATTTAGTCCGTC 59.273 50.000 0.00 0.00 0.00 4.79
2545 12122 2.743938 CTCGCAGCATATTTAGTCCGT 58.256 47.619 0.00 0.00 0.00 4.69
2546 12123 1.457303 GCTCGCAGCATATTTAGTCCG 59.543 52.381 0.00 0.00 41.89 4.79
2547 12124 1.457303 CGCTCGCAGCATATTTAGTCC 59.543 52.381 8.52 0.00 42.58 3.85
2548 12125 2.394708 TCGCTCGCAGCATATTTAGTC 58.605 47.619 8.52 0.00 42.58 2.59
2549 12126 2.509052 TCGCTCGCAGCATATTTAGT 57.491 45.000 8.52 0.00 42.58 2.24
2550 12127 2.473540 GCATCGCTCGCAGCATATTTAG 60.474 50.000 8.52 0.00 42.58 1.85
2551 12128 1.460743 GCATCGCTCGCAGCATATTTA 59.539 47.619 8.52 0.00 42.58 1.40
2552 12129 0.236711 GCATCGCTCGCAGCATATTT 59.763 50.000 8.52 0.00 42.58 1.40
2553 12130 1.572085 GGCATCGCTCGCAGCATATT 61.572 55.000 8.52 0.00 42.58 1.28
2554 12131 2.031516 GGCATCGCTCGCAGCATAT 61.032 57.895 8.52 0.00 42.58 1.78
2555 12132 2.649245 AAGGCATCGCTCGCAGCATA 62.649 55.000 8.52 0.00 42.58 3.14
2556 12133 4.542390 AGGCATCGCTCGCAGCAT 62.542 61.111 8.52 0.00 42.58 3.79
2557 12134 4.765449 AAGGCATCGCTCGCAGCA 62.765 61.111 8.52 0.00 42.58 4.41
2558 12135 2.533391 AAAAAGGCATCGCTCGCAGC 62.533 55.000 0.00 0.00 38.02 5.25
2559 12136 0.726827 TAAAAAGGCATCGCTCGCAG 59.273 50.000 0.00 0.00 0.00 5.18
2560 12137 1.160989 TTAAAAAGGCATCGCTCGCA 58.839 45.000 0.00 0.00 0.00 5.10
2561 12138 2.111756 CATTAAAAAGGCATCGCTCGC 58.888 47.619 0.00 0.00 0.00 5.03
2562 12139 2.111756 GCATTAAAAAGGCATCGCTCG 58.888 47.619 0.00 0.00 0.00 5.03
2563 12140 2.111756 CGCATTAAAAAGGCATCGCTC 58.888 47.619 0.00 0.00 0.00 5.03
2564 12141 1.798813 GCGCATTAAAAAGGCATCGCT 60.799 47.619 0.30 0.00 38.48 4.93
2565 12142 0.572125 GCGCATTAAAAAGGCATCGC 59.428 50.000 0.30 0.00 34.61 4.58
2566 12143 0.839477 CGCGCATTAAAAAGGCATCG 59.161 50.000 8.75 0.00 0.00 3.84
2567 12144 0.572125 GCGCGCATTAAAAAGGCATC 59.428 50.000 29.10 0.00 0.00 3.91
2568 12145 1.139226 CGCGCGCATTAAAAAGGCAT 61.139 50.000 32.61 0.00 0.00 4.40
2569 12146 1.799519 CGCGCGCATTAAAAAGGCA 60.800 52.632 32.61 0.00 0.00 4.75
2570 12147 2.986809 CGCGCGCATTAAAAAGGC 59.013 55.556 32.61 0.00 0.00 4.35
2571 12148 2.986809 GCGCGCGCATTAAAAAGG 59.013 55.556 46.11 12.36 41.49 3.11
2581 12158 2.430080 ATAACTAATGCAGCGCGCGC 62.430 55.000 45.10 45.10 46.97 6.86
2582 12159 0.781787 TATAACTAATGCAGCGCGCG 59.218 50.000 28.44 28.44 46.97 6.86
2583 12160 1.462541 GCTATAACTAATGCAGCGCGC 60.463 52.381 26.66 26.66 42.89 6.86
2584 12161 2.493997 GCTATAACTAATGCAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
2587 12164 1.464997 GCCCGCTATAACTAATGCAGC 59.535 52.381 0.00 0.00 0.00 5.25
2588 12165 1.726791 CGCCCGCTATAACTAATGCAG 59.273 52.381 0.00 0.00 0.00 4.41
2589 12166 1.790755 CGCCCGCTATAACTAATGCA 58.209 50.000 0.00 0.00 0.00 3.96
2590 12167 0.442699 GCGCCCGCTATAACTAATGC 59.557 55.000 5.27 0.00 38.26 3.56
2591 12168 1.726791 CTGCGCCCGCTATAACTAATG 59.273 52.381 14.13 0.00 42.51 1.90
2592 12169 1.343465 ACTGCGCCCGCTATAACTAAT 59.657 47.619 14.13 0.00 42.51 1.73
2593 12170 0.748450 ACTGCGCCCGCTATAACTAA 59.252 50.000 14.13 0.00 42.51 2.24
2594 12171 0.748450 AACTGCGCCCGCTATAACTA 59.252 50.000 14.13 0.00 42.51 2.24
2595 12172 0.107848 AAACTGCGCCCGCTATAACT 60.108 50.000 14.13 0.00 42.51 2.24
2596 12173 0.730840 AAAACTGCGCCCGCTATAAC 59.269 50.000 14.13 0.00 42.51 1.89
2597 12174 1.131504 CAAAAACTGCGCCCGCTATAA 59.868 47.619 14.13 0.00 42.51 0.98
2598 12175 0.730265 CAAAAACTGCGCCCGCTATA 59.270 50.000 14.13 0.00 42.51 1.31
2599 12176 1.241315 ACAAAAACTGCGCCCGCTAT 61.241 50.000 14.13 0.00 42.51 2.97
2600 12177 1.894756 ACAAAAACTGCGCCCGCTA 60.895 52.632 14.13 0.00 42.51 4.26
2601 12178 3.216292 ACAAAAACTGCGCCCGCT 61.216 55.556 14.13 0.00 42.51 5.52
2602 12179 3.029735 CACAAAAACTGCGCCCGC 61.030 61.111 4.18 5.60 42.35 6.13
2603 12180 3.029735 GCACAAAAACTGCGCCCG 61.030 61.111 4.18 0.00 0.00 6.13
2608 12185 2.588585 GCAGCCGCACAAAAACTGC 61.589 57.895 0.00 0.00 45.95 4.40
2609 12186 1.066257 AGCAGCCGCACAAAAACTG 59.934 52.632 0.00 0.00 42.27 3.16
2610 12187 1.066257 CAGCAGCCGCACAAAAACT 59.934 52.632 0.00 0.00 42.27 2.66
2611 12188 1.950630 CCAGCAGCCGCACAAAAAC 60.951 57.895 0.00 0.00 42.27 2.43
2612 12189 2.074230 CTCCAGCAGCCGCACAAAAA 62.074 55.000 0.00 0.00 42.27 1.94
2613 12190 2.518112 TCCAGCAGCCGCACAAAA 60.518 55.556 0.00 0.00 42.27 2.44
2614 12191 2.979676 CTCCAGCAGCCGCACAAA 60.980 61.111 0.00 0.00 42.27 2.83
2615 12192 3.939939 TCTCCAGCAGCCGCACAA 61.940 61.111 0.00 0.00 42.27 3.33
2616 12193 4.687215 GTCTCCAGCAGCCGCACA 62.687 66.667 0.00 0.00 42.27 4.57
2617 12194 4.385405 AGTCTCCAGCAGCCGCAC 62.385 66.667 0.00 0.00 42.27 5.34
2618 12195 4.074526 GAGTCTCCAGCAGCCGCA 62.075 66.667 0.00 0.00 42.27 5.69
2619 12196 4.828925 GGAGTCTCCAGCAGCCGC 62.829 72.222 14.46 0.00 36.28 6.53
2620 12197 3.385384 TGGAGTCTCCAGCAGCCG 61.385 66.667 18.15 0.00 42.67 5.52
2627 12204 3.297134 AAAACTGCTTTGGAGTCTCCA 57.703 42.857 18.15 18.15 46.61 3.86
2628 12205 5.966742 ATAAAAACTGCTTTGGAGTCTCC 57.033 39.130 12.40 12.40 36.96 3.71
2629 12206 6.402226 CGGTATAAAAACTGCTTTGGAGTCTC 60.402 42.308 0.00 0.00 0.00 3.36
2630 12207 5.411669 CGGTATAAAAACTGCTTTGGAGTCT 59.588 40.000 0.00 0.00 0.00 3.24
2631 12208 5.628134 CGGTATAAAAACTGCTTTGGAGTC 58.372 41.667 0.00 0.00 0.00 3.36
2632 12209 4.082949 GCGGTATAAAAACTGCTTTGGAGT 60.083 41.667 0.63 0.00 46.27 3.85
2633 12210 4.412207 GCGGTATAAAAACTGCTTTGGAG 58.588 43.478 0.63 0.00 46.27 3.86
2634 12211 4.428615 GCGGTATAAAAACTGCTTTGGA 57.571 40.909 0.63 0.00 46.27 3.53
2640 12217 0.095762 ACGCGCGGTATAAAAACTGC 59.904 50.000 35.22 0.00 46.30 4.40
2641 12218 1.588082 CGACGCGCGGTATAAAAACTG 60.588 52.381 35.22 0.99 36.03 3.16
2642 12219 0.641783 CGACGCGCGGTATAAAAACT 59.358 50.000 35.22 8.59 36.03 2.66
2643 12220 0.916320 GCGACGCGCGGTATAAAAAC 60.916 55.000 35.22 11.64 44.55 2.43
2644 12221 1.344498 GCGACGCGCGGTATAAAAA 59.656 52.632 35.22 0.00 44.55 1.94
2645 12222 2.997072 GCGACGCGCGGTATAAAA 59.003 55.556 35.22 0.00 44.55 1.52
2661 12238 7.067973 ATCTCCAACAGAAGCGCTATATAAGC 61.068 42.308 12.05 2.56 40.52 3.09
2662 12239 5.773575 TCTCCAACAGAAGCGCTATATAAG 58.226 41.667 12.05 0.00 0.00 1.73
2663 12240 5.784578 TCTCCAACAGAAGCGCTATATAA 57.215 39.130 12.05 0.00 0.00 0.98
2664 12241 5.714047 CATCTCCAACAGAAGCGCTATATA 58.286 41.667 12.05 0.00 33.62 0.86
2665 12242 4.564041 CATCTCCAACAGAAGCGCTATAT 58.436 43.478 12.05 0.00 33.62 0.86
2666 12243 3.800261 GCATCTCCAACAGAAGCGCTATA 60.800 47.826 12.05 0.00 36.17 1.31
2667 12244 2.831333 CATCTCCAACAGAAGCGCTAT 58.169 47.619 12.05 0.00 33.62 2.97
2668 12245 1.740380 GCATCTCCAACAGAAGCGCTA 60.740 52.381 12.05 0.00 36.17 4.26
2669 12246 1.023513 GCATCTCCAACAGAAGCGCT 61.024 55.000 2.64 2.64 36.17 5.92
2670 12247 1.427020 GCATCTCCAACAGAAGCGC 59.573 57.895 0.00 0.00 36.17 5.92
2684 12261 2.484594 GGAAGGGAGCACTAAGAGCATC 60.485 54.545 0.00 0.00 0.00 3.91
2685 12262 1.488393 GGAAGGGAGCACTAAGAGCAT 59.512 52.381 0.00 0.00 0.00 3.79
2686 12263 0.905357 GGAAGGGAGCACTAAGAGCA 59.095 55.000 0.00 0.00 0.00 4.26
2687 12264 1.199615 AGGAAGGGAGCACTAAGAGC 58.800 55.000 0.00 0.00 0.00 4.09
2688 12265 3.769844 TGTTAGGAAGGGAGCACTAAGAG 59.230 47.826 0.00 0.00 0.00 2.85
2689 12266 3.786553 TGTTAGGAAGGGAGCACTAAGA 58.213 45.455 0.00 0.00 0.00 2.10
2690 12267 4.020128 AGTTGTTAGGAAGGGAGCACTAAG 60.020 45.833 0.00 0.00 0.00 2.18
2691 12268 3.908103 AGTTGTTAGGAAGGGAGCACTAA 59.092 43.478 0.00 0.00 0.00 2.24
2692 12269 3.260884 CAGTTGTTAGGAAGGGAGCACTA 59.739 47.826 0.00 0.00 0.00 2.74
2693 12270 2.039084 CAGTTGTTAGGAAGGGAGCACT 59.961 50.000 0.00 0.00 0.00 4.40
2694 12271 2.427506 CAGTTGTTAGGAAGGGAGCAC 58.572 52.381 0.00 0.00 0.00 4.40
2714 12291 0.824109 TCATCTGATGACCGACACCC 59.176 55.000 16.06 0.00 33.59 4.61
2716 12293 1.135915 AGCTCATCTGATGACCGACAC 59.864 52.381 16.06 2.87 35.06 3.67
2718 12295 2.593346 AAGCTCATCTGATGACCGAC 57.407 50.000 16.06 6.67 35.06 4.79
2719 12296 2.419159 CCAAAGCTCATCTGATGACCGA 60.419 50.000 16.06 0.00 35.06 4.69
2720 12297 1.938577 CCAAAGCTCATCTGATGACCG 59.061 52.381 16.06 9.09 35.06 4.79
2721 12298 2.092753 TCCCAAAGCTCATCTGATGACC 60.093 50.000 16.06 10.27 35.06 4.02
2722 12299 3.272574 TCCCAAAGCTCATCTGATGAC 57.727 47.619 16.06 12.70 35.06 3.06
2723 12300 3.265221 AGTTCCCAAAGCTCATCTGATGA 59.735 43.478 18.61 18.61 37.76 2.92
2724 12301 3.618351 AGTTCCCAAAGCTCATCTGATG 58.382 45.455 11.42 11.42 0.00 3.07
2725 12302 3.265221 TGAGTTCCCAAAGCTCATCTGAT 59.735 43.478 0.00 0.00 34.72 2.90
2726 12303 2.639347 TGAGTTCCCAAAGCTCATCTGA 59.361 45.455 0.00 0.00 34.72 3.27
2727 12304 3.063510 TGAGTTCCCAAAGCTCATCTG 57.936 47.619 0.00 0.00 34.72 2.90
2728 12305 3.795688 TTGAGTTCCCAAAGCTCATCT 57.204 42.857 0.00 0.00 38.79 2.90
2743 12320 3.030291 TGAAACCACCAGCATTTTGAGT 58.970 40.909 0.00 0.00 0.00 3.41
2744 12321 3.731652 TGAAACCACCAGCATTTTGAG 57.268 42.857 0.00 0.00 0.00 3.02
2748 12325 3.434309 AGCTATGAAACCACCAGCATTT 58.566 40.909 0.00 0.00 34.65 2.32
2750 12327 2.648059 GAGCTATGAAACCACCAGCAT 58.352 47.619 0.00 0.00 34.65 3.79
2753 12330 1.009829 GCGAGCTATGAAACCACCAG 58.990 55.000 0.00 0.00 0.00 4.00
2757 12334 2.988010 ATCTGCGAGCTATGAAACCA 57.012 45.000 0.00 0.00 0.00 3.67
2771 12357 0.901124 AGGGGATCGCATCTATCTGC 59.099 55.000 12.32 0.00 38.81 4.26
2812 12399 4.201851 CGGCCAAGTGAATTCTGTAGATTG 60.202 45.833 2.24 3.16 0.00 2.67
2845 12432 9.893305 AGTAGCATTAAAACAAGAACAACATAC 57.107 29.630 0.00 0.00 0.00 2.39
2891 12478 3.243839 GCAGGGAACAACAACATTGATGT 60.244 43.478 1.99 1.99 44.58 3.06
2896 12483 2.086610 AGGCAGGGAACAACAACATT 57.913 45.000 0.00 0.00 0.00 2.71
2903 12490 2.173782 TGTTCAGTTAGGCAGGGAACAA 59.826 45.455 0.00 0.00 43.25 2.83
2905 12492 2.561478 TGTTCAGTTAGGCAGGGAAC 57.439 50.000 0.00 0.00 38.59 3.62
2912 12499 8.986477 AATTTTATTGTCATGTTCAGTTAGGC 57.014 30.769 0.00 0.00 0.00 3.93
2926 12513 9.959749 TTGACTGGAACTGTTAATTTTATTGTC 57.040 29.630 0.00 0.00 41.64 3.18
2955 12544 4.280929 ACGAATAGCAGATATACAGCCACA 59.719 41.667 0.00 0.00 0.00 4.17
2972 12567 9.915629 ATTTGTACTGGCAAATTAAAACGAATA 57.084 25.926 0.00 0.00 43.97 1.75
2978 12573 6.073331 GCAGCATTTGTACTGGCAAATTAAAA 60.073 34.615 8.89 0.00 43.97 1.52
2982 12577 3.244146 TGCAGCATTTGTACTGGCAAATT 60.244 39.130 0.00 0.00 43.97 1.82
2984 12579 1.685517 TGCAGCATTTGTACTGGCAAA 59.314 42.857 0.00 2.99 41.77 3.68
2985 12580 1.000385 GTGCAGCATTTGTACTGGCAA 60.000 47.619 0.00 0.00 39.10 4.52
2986 12581 0.597568 GTGCAGCATTTGTACTGGCA 59.402 50.000 0.00 0.00 39.10 4.92
2987 12582 0.109132 GGTGCAGCATTTGTACTGGC 60.109 55.000 11.86 0.00 41.57 4.85
2988 12583 0.527565 GGGTGCAGCATTTGTACTGG 59.472 55.000 19.06 0.00 41.57 4.00
2989 12584 0.168788 CGGGTGCAGCATTTGTACTG 59.831 55.000 19.06 0.00 41.57 2.74
2990 12585 0.250727 ACGGGTGCAGCATTTGTACT 60.251 50.000 19.06 0.00 41.57 2.73
2991 12586 0.596082 AACGGGTGCAGCATTTGTAC 59.404 50.000 19.06 0.00 41.17 2.90
2992 12587 2.186532 TAACGGGTGCAGCATTTGTA 57.813 45.000 19.06 0.00 0.00 2.41
2993 12588 1.544724 ATAACGGGTGCAGCATTTGT 58.455 45.000 19.06 7.34 0.00 2.83
2994 12589 2.652941 AATAACGGGTGCAGCATTTG 57.347 45.000 19.06 6.68 0.00 2.32
2995 12590 3.006323 TGAAAATAACGGGTGCAGCATTT 59.994 39.130 19.06 11.72 0.00 2.32
2996 12591 2.560542 TGAAAATAACGGGTGCAGCATT 59.439 40.909 19.06 13.52 0.00 3.56
2997 12592 2.166829 TGAAAATAACGGGTGCAGCAT 58.833 42.857 19.06 5.78 0.00 3.79
2998 12593 1.610363 TGAAAATAACGGGTGCAGCA 58.390 45.000 19.06 0.00 0.00 4.41
2999 12594 2.287909 TGTTGAAAATAACGGGTGCAGC 60.288 45.455 7.55 7.55 33.28 5.25
3000 12595 3.634568 TGTTGAAAATAACGGGTGCAG 57.365 42.857 0.00 0.00 33.28 4.41
3001 12596 5.906113 ATATGTTGAAAATAACGGGTGCA 57.094 34.783 0.00 0.00 33.28 4.57
3002 12597 7.589574 AAAATATGTTGAAAATAACGGGTGC 57.410 32.000 0.00 0.00 33.28 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.