Multiple sequence alignment - TraesCS7D01G502100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G502100 chr7D 100.000 9856 0 0 1 9856 607616174 607606319 0.000000e+00 18201.0
1 TraesCS7D01G502100 chr7D 95.963 4805 149 29 1 4771 610213369 610218162 0.000000e+00 7757.0
2 TraesCS7D01G502100 chr7D 93.869 1990 100 14 7882 9856 610221725 610223707 0.000000e+00 2979.0
3 TraesCS7D01G502100 chr7D 90.148 741 53 14 6467 7199 610219941 610220669 0.000000e+00 946.0
4 TraesCS7D01G502100 chr7D 81.361 338 50 7 9043 9371 514888032 514887699 7.590000e-66 263.0
5 TraesCS7D01G502100 chr7D 84.231 260 39 2 4770 5028 610218208 610218466 1.640000e-62 252.0
6 TraesCS7D01G502100 chr7D 74.017 458 87 23 1628 2060 609900585 609901035 3.690000e-34 158.0
7 TraesCS7D01G502100 chr7D 84.677 124 13 3 75 198 608426330 608426447 1.740000e-22 119.0
8 TraesCS7D01G502100 chr7D 88.764 89 9 1 6380 6467 610219905 610219993 3.760000e-19 108.0
9 TraesCS7D01G502100 chr7D 98.148 54 1 0 6414 6467 607609709 607609656 2.930000e-15 95.3
10 TraesCS7D01G502100 chr7D 98.148 54 1 0 6466 6519 607609761 607609708 2.930000e-15 95.3
11 TraesCS7D01G502100 chr7D 86.250 80 11 0 8645 8724 570639716 570639637 4.900000e-13 87.9
12 TraesCS7D01G502100 chr7D 76.471 170 22 12 4847 5006 584234543 584234382 1.060000e-09 76.8
13 TraesCS7D01G502100 chr7B 92.671 3575 207 31 1477 5026 693867573 693864029 0.000000e+00 5099.0
14 TraesCS7D01G502100 chr7B 91.507 3662 216 44 1335 4949 693248759 693245146 0.000000e+00 4951.0
15 TraesCS7D01G502100 chr7B 92.578 3449 181 29 1307 4725 696899066 696895663 0.000000e+00 4881.0
16 TraesCS7D01G502100 chr7B 88.744 3385 281 45 958 4284 697256976 697253634 0.000000e+00 4048.0
17 TraesCS7D01G502100 chr7B 94.418 1702 86 7 5502 7199 693245147 693243451 0.000000e+00 2608.0
18 TraesCS7D01G502100 chr7B 92.244 1560 107 12 5267 6818 696895350 696893797 0.000000e+00 2198.0
19 TraesCS7D01G502100 chr7B 87.554 1165 113 14 6051 7197 693863459 693862309 0.000000e+00 1319.0
20 TraesCS7D01G502100 chr7B 92.830 795 52 4 7865 8659 696867241 696866452 0.000000e+00 1147.0
21 TraesCS7D01G502100 chr7B 86.830 858 47 24 488 1297 693249585 693248746 0.000000e+00 898.0
22 TraesCS7D01G502100 chr7B 89.671 668 56 9 820 1478 693904975 693904312 0.000000e+00 839.0
23 TraesCS7D01G502100 chr7B 85.372 834 92 20 7819 8641 697247446 697246632 0.000000e+00 837.0
24 TraesCS7D01G502100 chr7B 87.703 740 60 17 6468 7199 697251316 697250600 0.000000e+00 833.0
25 TraesCS7D01G502100 chr7B 84.901 755 48 20 487 1195 696900069 696899335 0.000000e+00 702.0
26 TraesCS7D01G502100 chr7B 93.966 348 19 1 8723 9068 696866463 696866116 8.770000e-145 525.0
27 TraesCS7D01G502100 chr7B 84.876 443 62 5 5735 6174 693863552 693863112 9.090000e-120 442.0
28 TraesCS7D01G502100 chr7B 87.805 369 41 4 5198 5564 693863921 693863555 7.070000e-116 429.0
29 TraesCS7D01G502100 chr7B 85.581 430 28 10 7455 7865 696889546 696889132 4.260000e-113 420.0
30 TraesCS7D01G502100 chr7B 76.580 807 160 18 5388 6174 697252132 697251335 5.510000e-112 416.0
31 TraesCS7D01G502100 chr7B 84.521 407 49 10 3 402 696901679 696901280 3.340000e-104 390.0
32 TraesCS7D01G502100 chr7B 83.296 443 48 15 33 470 693253844 693253423 1.550000e-102 385.0
33 TraesCS7D01G502100 chr7B 78.548 620 108 20 8746 9361 694443865 694443267 1.550000e-102 385.0
34 TraesCS7D01G502100 chr7B 87.898 314 29 6 9064 9371 696865589 696865279 2.620000e-95 361.0
35 TraesCS7D01G502100 chr7B 93.089 246 11 5 7217 7458 693238388 693238145 1.220000e-93 355.0
36 TraesCS7D01G502100 chr7B 73.538 975 212 39 7449 8401 695366326 695367276 7.380000e-86 329.0
37 TraesCS7D01G502100 chr7B 80.778 437 33 24 7315 7717 693844835 693844416 2.690000e-75 294.0
38 TraesCS7D01G502100 chr7B 81.440 361 64 3 6047 6405 693244827 693244468 9.680000e-75 292.0
39 TraesCS7D01G502100 chr7B 86.380 279 20 11 582 845 697257664 697257389 1.250000e-73 289.0
40 TraesCS7D01G502100 chr7B 78.091 461 87 10 1037 1484 697545258 697545717 7.540000e-71 279.0
41 TraesCS7D01G502100 chr7B 81.268 347 53 10 7465 7808 693258545 693258208 4.540000e-68 270.0
42 TraesCS7D01G502100 chr7B 81.267 363 43 13 7445 7804 697256815 697256475 4.540000e-68 270.0
43 TraesCS7D01G502100 chr7B 74.461 603 116 19 7445 8022 693657329 693656740 9.960000e-55 226.0
44 TraesCS7D01G502100 chr7B 74.129 603 118 23 7445 8022 696191897 696191308 2.160000e-51 215.0
45 TraesCS7D01G502100 chr7B 73.801 584 116 18 7464 8022 685241391 685240820 7.810000e-46 196.0
46 TraesCS7D01G502100 chr7B 94.565 92 5 0 824 915 697257376 697257285 1.030000e-29 143.0
47 TraesCS7D01G502100 chr7B 98.148 54 1 0 6414 6467 696894146 696894093 2.930000e-15 95.3
48 TraesCS7D01G502100 chr7B 98.148 54 1 0 6466 6519 696894198 696894145 2.930000e-15 95.3
49 TraesCS7D01G502100 chr7B 94.444 54 3 0 6466 6519 693863096 693863043 6.340000e-12 84.2
50 TraesCS7D01G502100 chrUn 87.599 3790 340 70 582 4284 77648986 77645240 0.000000e+00 4276.0
51 TraesCS7D01G502100 chrUn 95.860 2488 74 11 2578 5056 83439665 83437198 0.000000e+00 3997.0
52 TraesCS7D01G502100 chrUn 90.928 2447 155 18 7455 9856 83396756 83394332 0.000000e+00 3227.0
53 TraesCS7D01G502100 chrUn 92.281 1982 119 17 5222 7199 83436862 83434911 0.000000e+00 2782.0
54 TraesCS7D01G502100 chrUn 89.188 1637 134 14 948 2550 83441280 83439653 0.000000e+00 2002.0
55 TraesCS7D01G502100 chrUn 84.650 1342 143 29 1744 3051 317940740 317942052 0.000000e+00 1279.0
56 TraesCS7D01G502100 chrUn 84.431 1169 145 23 2275 3429 317942050 317943195 0.000000e+00 1116.0
57 TraesCS7D01G502100 chrUn 91.165 747 38 12 1 722 373621136 373621879 0.000000e+00 989.0
58 TraesCS7D01G502100 chrUn 92.593 648 35 1 837 1484 373622204 373622838 0.000000e+00 918.0
59 TraesCS7D01G502100 chrUn 95.247 547 21 5 1 545 472376188 472375645 0.000000e+00 861.0
60 TraesCS7D01G502100 chrUn 86.577 745 58 19 6467 7199 425668888 425668174 0.000000e+00 784.0
61 TraesCS7D01G502100 chrUn 86.078 747 65 22 6468 7199 77643033 77642311 0.000000e+00 767.0
62 TraesCS7D01G502100 chrUn 89.512 410 40 3 3428 3836 317943276 317943683 5.280000e-142 516.0
63 TraesCS7D01G502100 chrUn 88.736 364 38 2 7445 7808 77636952 77636592 9.090000e-120 442.0
64 TraesCS7D01G502100 chrUn 78.869 601 104 15 8770 9361 77478405 77477819 1.550000e-102 385.0
65 TraesCS7D01G502100 chrUn 83.750 400 45 13 4369 4749 317943730 317944128 2.620000e-95 361.0
66 TraesCS7D01G502100 chrUn 84.828 290 29 7 4369 4643 77645238 77644949 2.710000e-70 278.0
67 TraesCS7D01G502100 chrUn 88.559 236 14 5 7200 7428 83426280 83426051 3.510000e-69 274.0
68 TraesCS7D01G502100 chrUn 80.323 371 59 10 7442 7808 83447706 83447346 1.630000e-67 268.0
69 TraesCS7D01G502100 chrUn 85.987 157 7 4 7302 7458 77637108 77636967 4.770000e-33 154.0
70 TraesCS7D01G502100 chrUn 89.855 69 4 1 518 583 77649073 77649005 1.760000e-12 86.1
71 TraesCS7D01G502100 chr7A 97.206 2004 45 6 3088 5087 699840329 699838333 0.000000e+00 3380.0
72 TraesCS7D01G502100 chr7A 94.048 2016 107 5 5185 7199 699838265 699836262 0.000000e+00 3046.0
73 TraesCS7D01G502100 chr7A 92.788 1872 110 17 7922 9778 699831811 699829950 0.000000e+00 2686.0
74 TraesCS7D01G502100 chr7A 91.213 1673 121 8 7445 9097 704452005 704453671 0.000000e+00 2252.0
75 TraesCS7D01G502100 chr7A 91.882 1626 91 12 711 2320 699842746 699841146 0.000000e+00 2233.0
76 TraesCS7D01G502100 chr7A 96.882 449 13 1 2350 2797 699841150 699840702 0.000000e+00 750.0
77 TraesCS7D01G502100 chr7A 93.768 353 18 2 83 431 699862023 699861671 2.440000e-145 527.0
78 TraesCS7D01G502100 chr7A 96.787 249 7 1 2858 3106 699840693 699840446 1.980000e-111 414.0
79 TraesCS7D01G502100 chr7A 79.852 541 93 10 8746 9283 700260581 700260054 2.010000e-101 381.0
80 TraesCS7D01G502100 chr7A 84.571 350 49 5 5828 6174 699837400 699837053 9.480000e-90 342.0
81 TraesCS7D01G502100 chr7A 80.323 371 59 10 7442 7808 700421815 700422175 1.630000e-67 268.0
82 TraesCS7D01G502100 chr7A 80.108 372 58 14 7442 7808 699865759 699865399 7.590000e-66 263.0
83 TraesCS7D01G502100 chr7A 84.076 157 10 4 7302 7458 704451849 704451990 4.800000e-28 137.0
84 TraesCS7D01G502100 chr7A 94.545 55 3 0 6413 6467 699836989 699836935 1.760000e-12 86.1
85 TraesCS7D01G502100 chr7A 95.833 48 2 0 5142 5189 699838333 699838286 2.950000e-10 78.7
86 TraesCS7D01G502100 chr4A 79.874 159 23 4 4846 5000 571066421 571066574 3.760000e-19 108.0
87 TraesCS7D01G502100 chr2D 85.000 80 12 0 8645 8724 530555135 530555056 2.280000e-11 82.4
88 TraesCS7D01G502100 chr2D 85.000 80 10 1 4288 4365 520521592 520521671 8.210000e-11 80.5
89 TraesCS7D01G502100 chr1A 82.653 98 12 5 8632 8727 320523007 320523101 2.280000e-11 82.4
90 TraesCS7D01G502100 chr2B 82.000 100 13 5 5852 5948 239630021 239629924 8.210000e-11 80.5
91 TraesCS7D01G502100 chr1D 83.908 87 11 3 8643 8728 12067408 12067492 8.210000e-11 80.5
92 TraesCS7D01G502100 chr6B 80.531 113 12 8 4275 4380 176396990 176396881 2.950000e-10 78.7
93 TraesCS7D01G502100 chr5B 80.208 96 17 2 8633 8727 602247050 602247144 4.940000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G502100 chr7D 607606319 607616174 9855 True 18201.000000 18201 100.000000 1 9856 1 chr7D.!!$R4 9855
1 TraesCS7D01G502100 chr7D 610213369 610223707 10338 False 2408.400000 7757 90.595000 1 9856 5 chr7D.!!$F3 9855
2 TraesCS7D01G502100 chr7B 693243451 693253844 10393 True 1826.800000 4951 87.498200 33 7199 5 chr7B.!!$R10 7166
3 TraesCS7D01G502100 chr7B 693862309 693867573 5264 True 1474.640000 5099 89.470000 1477 7197 5 chr7B.!!$R11 5720
4 TraesCS7D01G502100 chr7B 696893797 696901679 7882 True 1393.600000 4881 91.756667 3 6818 6 chr7B.!!$R13 6815
5 TraesCS7D01G502100 chr7B 697246632 697257664 11032 True 976.571429 4048 85.801571 582 8641 7 chr7B.!!$R14 8059
6 TraesCS7D01G502100 chr7B 693904312 693904975 663 True 839.000000 839 89.671000 820 1478 1 chr7B.!!$R6 658
7 TraesCS7D01G502100 chr7B 696865279 696867241 1962 True 677.666667 1147 91.564667 7865 9371 3 chr7B.!!$R12 1506
8 TraesCS7D01G502100 chr7B 694443267 694443865 598 True 385.000000 385 78.548000 8746 9361 1 chr7B.!!$R7 615
9 TraesCS7D01G502100 chr7B 695366326 695367276 950 False 329.000000 329 73.538000 7449 8401 1 chr7B.!!$F1 952
10 TraesCS7D01G502100 chr7B 693656740 693657329 589 True 226.000000 226 74.461000 7445 8022 1 chr7B.!!$R4 577
11 TraesCS7D01G502100 chr7B 696191308 696191897 589 True 215.000000 215 74.129000 7445 8022 1 chr7B.!!$R8 577
12 TraesCS7D01G502100 chrUn 83394332 83396756 2424 True 3227.000000 3227 90.928000 7455 9856 1 chrUn.!!$R2 2401
13 TraesCS7D01G502100 chrUn 83434911 83441280 6369 True 2927.000000 3997 92.443000 948 7199 3 chrUn.!!$R9 6251
14 TraesCS7D01G502100 chrUn 77642311 77649073 6762 True 1351.775000 4276 87.090000 518 7199 4 chrUn.!!$R8 6681
15 TraesCS7D01G502100 chrUn 373621136 373622838 1702 False 953.500000 989 91.879000 1 1484 2 chrUn.!!$F2 1483
16 TraesCS7D01G502100 chrUn 472375645 472376188 543 True 861.000000 861 95.247000 1 545 1 chrUn.!!$R6 544
17 TraesCS7D01G502100 chrUn 317940740 317944128 3388 False 818.000000 1279 85.585750 1744 4749 4 chrUn.!!$F1 3005
18 TraesCS7D01G502100 chrUn 425668174 425668888 714 True 784.000000 784 86.577000 6467 7199 1 chrUn.!!$R5 732
19 TraesCS7D01G502100 chrUn 77477819 77478405 586 True 385.000000 385 78.869000 8770 9361 1 chrUn.!!$R1 591
20 TraesCS7D01G502100 chrUn 77636592 77637108 516 True 298.000000 442 87.361500 7302 7808 2 chrUn.!!$R7 506
21 TraesCS7D01G502100 chr7A 699829950 699831811 1861 True 2686.000000 2686 92.788000 7922 9778 1 chr7A.!!$R1 1856
22 TraesCS7D01G502100 chr7A 699836262 699842746 6484 True 1291.225000 3380 93.969250 711 7199 8 chr7A.!!$R3 6488
23 TraesCS7D01G502100 chr7A 704451849 704453671 1822 False 1194.500000 2252 87.644500 7302 9097 2 chr7A.!!$F2 1795
24 TraesCS7D01G502100 chr7A 699861671 699865759 4088 True 395.000000 527 86.938000 83 7808 2 chr7A.!!$R4 7725
25 TraesCS7D01G502100 chr7A 700260054 700260581 527 True 381.000000 381 79.852000 8746 9283 1 chr7A.!!$R2 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 4521 1.577922 CTGCTGTGTCATGTGGTGC 59.422 57.895 0.00 0.00 0.0 5.01 F
1005 5459 0.468648 CTCGAATTCCCCTACCACCC 59.531 60.000 0.00 0.00 0.0 4.61 F
1475 6104 0.974383 CCCAAGTACCTCACGACCTT 59.026 55.000 0.00 0.00 0.0 3.50 F
1649 6278 1.337260 GCTGCCTTCGTCTTCTCTTCA 60.337 52.381 0.00 0.00 0.0 3.02 F
1655 6284 3.553922 CCTTCGTCTTCTCTTCAAGCACT 60.554 47.826 0.00 0.00 0.0 4.40 F
2675 7406 4.218635 ACGACTCATCTTGTCTGCTTCTTA 59.781 41.667 0.00 0.00 32.7 2.10 F
4056 9914 2.224090 TGTGGTGCAGTAGTTTAGCGAA 60.224 45.455 0.00 0.00 0.0 4.70 F
5153 11938 1.123077 TGAATATGCGCTGGGACTCT 58.877 50.000 9.73 0.00 0.0 3.24 F
5577 12696 0.034337 GAGTTCTTGGTACCGGTGCA 59.966 55.000 24.62 7.83 0.0 4.57 F
7312 17330 0.904865 TCGCTCACACTCCCCATCTT 60.905 55.000 0.00 0.00 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 6455 0.176680 CTCCATCCTTCGGGTGTCAG 59.823 60.000 0.00 0.00 36.28 3.51 R
2439 7165 7.148474 CGATTTTCTCCGGAAAGTGATTAGAAA 60.148 37.037 5.23 5.60 41.66 2.52 R
3239 8901 4.997395 ACGAGTCATGAGCACTTTTATGTT 59.003 37.500 0.00 0.00 0.00 2.71 R
3508 9262 5.230516 CGTCAAAACCATGCATTGATGTATG 59.769 40.000 13.14 13.14 46.27 2.39 R
3971 9828 4.329545 GTCCGGCAGACCAAGGCA 62.330 66.667 0.00 0.00 39.84 4.75 R
4725 10780 6.059484 TGGGGGTTCTCGTTTTTCATATATC 58.941 40.000 0.00 0.00 0.00 1.63 R
5219 12285 0.033504 AACCTCGACGTGAGCACATT 59.966 50.000 0.00 0.00 43.82 2.71 R
7409 17442 1.305297 TGGGATCTCCGTCAGCAGT 60.305 57.895 0.00 0.00 38.76 4.40 R
7484 17571 2.106131 CCATCGGTGGCGATTCGA 59.894 61.111 10.88 0.45 39.01 3.71 R
9388 20343 0.250166 ACAAAGTAGCACCGGTCACC 60.250 55.000 2.59 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
614 4521 1.577922 CTGCTGTGTCATGTGGTGC 59.422 57.895 0.00 0.00 0.00 5.01
1005 5459 0.468648 CTCGAATTCCCCTACCACCC 59.531 60.000 0.00 0.00 0.00 4.61
1475 6104 0.974383 CCCAAGTACCTCACGACCTT 59.026 55.000 0.00 0.00 0.00 3.50
1587 6216 2.300967 ATGGAAGAGGCGGCAAGGA 61.301 57.895 13.08 0.00 0.00 3.36
1649 6278 1.337260 GCTGCCTTCGTCTTCTCTTCA 60.337 52.381 0.00 0.00 0.00 3.02
1655 6284 3.553922 CCTTCGTCTTCTCTTCAAGCACT 60.554 47.826 0.00 0.00 0.00 4.40
1812 6451 4.701651 CCACCATGAATAAGAAGTTGCTCA 59.298 41.667 0.00 0.00 0.00 4.26
1816 6455 5.446473 CCATGAATAAGAAGTTGCTCACGTC 60.446 44.000 0.00 0.00 34.28 4.34
2590 7319 8.153221 TGGTTAAGGTGTAGAAGGAATATTGA 57.847 34.615 0.00 0.00 0.00 2.57
2675 7406 4.218635 ACGACTCATCTTGTCTGCTTCTTA 59.781 41.667 0.00 0.00 32.70 2.10
3239 8901 9.299963 CACATAAAAGTGAAGTTTTGATGTTGA 57.700 29.630 6.19 0.00 42.05 3.18
3508 9262 5.123820 TGTTTTGTCTTGCATATGTAGGAGC 59.876 40.000 5.86 3.01 0.00 4.70
3697 9471 8.951787 AAACCTACACAATTATCGCTTGTATA 57.048 30.769 0.00 0.00 35.15 1.47
3873 9654 5.714806 TGGAGTTCCTATGGAAACCAAATTC 59.285 40.000 17.53 0.00 43.86 2.17
4056 9914 2.224090 TGTGGTGCAGTAGTTTAGCGAA 60.224 45.455 0.00 0.00 0.00 4.70
4269 10142 8.070171 GTGGAATAACGTCATGGATTTCTTATG 58.930 37.037 0.00 0.00 0.00 1.90
4271 10144 8.621286 GGAATAACGTCATGGATTTCTTATGTT 58.379 33.333 0.00 0.00 0.00 2.71
4350 10239 4.630894 TGAACTAAAGCCACAACACTTG 57.369 40.909 0.00 0.00 0.00 3.16
4763 11006 1.211567 CCCCCAGTATCACACCCCAA 61.212 60.000 0.00 0.00 0.00 4.12
4960 11258 4.813235 GCCATGCAACGGGGGCTA 62.813 66.667 7.58 0.00 43.09 3.93
5101 11521 4.695791 GGGGGAGGGGGTGGAAGT 62.696 72.222 0.00 0.00 0.00 3.01
5102 11522 3.339093 GGGGAGGGGGTGGAAGTG 61.339 72.222 0.00 0.00 0.00 3.16
5103 11523 3.339093 GGGAGGGGGTGGAAGTGG 61.339 72.222 0.00 0.00 0.00 4.00
5104 11524 4.048470 GGAGGGGGTGGAAGTGGC 62.048 72.222 0.00 0.00 0.00 5.01
5105 11525 2.936032 GAGGGGGTGGAAGTGGCT 60.936 66.667 0.00 0.00 0.00 4.75
5106 11526 3.260100 AGGGGGTGGAAGTGGCTG 61.260 66.667 0.00 0.00 0.00 4.85
5108 11528 3.971702 GGGGTGGAAGTGGCTGCT 61.972 66.667 0.00 0.00 0.00 4.24
5109 11529 2.116125 GGGTGGAAGTGGCTGCTT 59.884 61.111 0.00 0.00 0.00 3.91
5110 11530 1.973812 GGGTGGAAGTGGCTGCTTC 60.974 63.158 11.93 11.93 42.92 3.86
5115 11900 2.032681 AAGTGGCTGCTTCGGGTC 59.967 61.111 0.00 0.00 0.00 4.46
5153 11938 1.123077 TGAATATGCGCTGGGACTCT 58.877 50.000 9.73 0.00 0.00 3.24
5159 11945 1.195115 TGCGCTGGGACTCTAGATTT 58.805 50.000 9.73 0.00 0.00 2.17
5219 12285 3.385384 CCGCTGGAGAGTGCAGGA 61.385 66.667 0.00 0.00 36.25 3.86
5258 12324 3.530265 TGTTGTGGTGTTACTCGACTT 57.470 42.857 1.81 0.00 0.00 3.01
5260 12326 4.255301 TGTTGTGGTGTTACTCGACTTTT 58.745 39.130 1.81 0.00 0.00 2.27
5531 12645 2.022527 AGGCTCATCTCCTACCTCCTTT 60.023 50.000 0.00 0.00 30.79 3.11
5577 12696 0.034337 GAGTTCTTGGTACCGGTGCA 59.966 55.000 24.62 7.83 0.00 4.57
5649 12769 2.445845 ATGCCCTAGCCAGCCGTA 60.446 61.111 0.00 0.00 38.69 4.02
5657 12777 4.082523 GCCAGCCGTACCTCTGCA 62.083 66.667 4.05 0.00 0.00 4.41
5724 12860 4.228567 TGTTGTGTGCGGCCTCGA 62.229 61.111 0.00 0.00 39.00 4.04
5773 12909 4.941263 GCTCTAGATCTAGTCGTCATGGAT 59.059 45.833 25.54 0.00 34.84 3.41
5799 12935 3.311322 TGTCGACACTGTTCATTTGGTTC 59.689 43.478 15.76 0.00 0.00 3.62
5978 13116 1.722011 CATTTGTAAGTCGGAGCGGT 58.278 50.000 0.00 0.00 0.00 5.68
6073 13214 3.717294 GGGGTCGGTGTGGATGCT 61.717 66.667 0.00 0.00 0.00 3.79
6120 13261 2.970324 GTGTCGGCTTCGGTTGCA 60.970 61.111 0.00 0.00 34.13 4.08
6224 13365 2.433239 GGCTCCGGAAATAGTTGTAGGA 59.567 50.000 5.23 0.00 0.00 2.94
6328 13469 3.621461 CGGCTTCAAATAGGGTTGTAGGT 60.621 47.826 0.00 0.00 0.00 3.08
6551 13709 8.488651 TGTTCCTCGAATAAGAAAGGAAATAC 57.511 34.615 4.37 0.00 46.54 1.89
6589 13747 4.713321 AGGAAACTGCCAATTTAGCATGAT 59.287 37.500 0.00 0.00 40.04 2.45
6624 13782 6.015095 CCAGGGCTCTCTTTTCTATTTGTTTT 60.015 38.462 0.00 0.00 0.00 2.43
6709 13870 2.431057 ACACACGAAAGGAAGTCAGTCT 59.569 45.455 0.00 0.00 0.00 3.24
6710 13871 3.118738 ACACACGAAAGGAAGTCAGTCTT 60.119 43.478 0.00 0.00 39.32 3.01
6746 13912 4.403585 TTTCAGATCCAGCTGAGATCAG 57.596 45.455 30.39 25.89 44.93 2.90
6893 14071 5.648092 CCAAAATTCTTCTCGGGTGTCTAAT 59.352 40.000 0.00 0.00 0.00 1.73
6894 14072 6.821665 CCAAAATTCTTCTCGGGTGTCTAATA 59.178 38.462 0.00 0.00 0.00 0.98
6895 14073 7.335924 CCAAAATTCTTCTCGGGTGTCTAATAA 59.664 37.037 0.00 0.00 0.00 1.40
6896 14074 7.845066 AAATTCTTCTCGGGTGTCTAATAAC 57.155 36.000 0.00 0.00 0.00 1.89
6897 14075 6.793505 ATTCTTCTCGGGTGTCTAATAACT 57.206 37.500 0.00 0.00 0.00 2.24
7207 17213 2.086054 AAGTGACATTGCCGAGACTC 57.914 50.000 0.00 0.00 0.00 3.36
7209 17215 1.067283 AGTGACATTGCCGAGACTCTG 60.067 52.381 0.03 0.00 0.00 3.35
7215 17221 2.743636 TTGCCGAGACTCTGGTTAAG 57.256 50.000 12.80 0.00 0.00 1.85
7220 17226 3.866327 GCCGAGACTCTGGTTAAGATTTC 59.134 47.826 12.80 0.00 33.29 2.17
7223 17229 6.166982 CCGAGACTCTGGTTAAGATTTCTTT 58.833 40.000 0.03 0.00 37.40 2.52
7226 17232 6.477253 AGACTCTGGTTAAGATTTCTTTCCC 58.523 40.000 0.00 0.41 37.40 3.97
7227 17233 6.273495 AGACTCTGGTTAAGATTTCTTTCCCT 59.727 38.462 0.00 0.00 37.40 4.20
7228 17234 7.458170 AGACTCTGGTTAAGATTTCTTTCCCTA 59.542 37.037 0.00 0.00 37.40 3.53
7229 17235 7.625469 ACTCTGGTTAAGATTTCTTTCCCTAG 58.375 38.462 0.00 5.29 37.40 3.02
7230 17236 7.237887 ACTCTGGTTAAGATTTCTTTCCCTAGT 59.762 37.037 0.00 5.78 37.40 2.57
7241 17255 5.080969 TCTTTCCCTAGTATGACAAACGG 57.919 43.478 0.00 0.00 0.00 4.44
7242 17256 2.973694 TCCCTAGTATGACAAACGGC 57.026 50.000 0.00 0.00 0.00 5.68
7279 17293 3.267233 TGACCCAGCAAGGCCCAT 61.267 61.111 0.00 0.00 35.39 4.00
7312 17330 0.904865 TCGCTCACACTCCCCATCTT 60.905 55.000 0.00 0.00 0.00 2.40
7331 17349 1.306226 CTCTCCCCGAGGGTTCCTT 60.306 63.158 7.48 0.00 44.74 3.36
7332 17350 1.305887 TCTCCCCGAGGGTTCCTTC 60.306 63.158 7.48 0.00 44.74 3.46
7333 17351 2.285144 TCCCCGAGGGTTCCTTCC 60.285 66.667 7.48 0.00 44.74 3.46
7334 17352 2.285442 CCCCGAGGGTTCCTTCCT 60.285 66.667 7.48 0.00 38.25 3.36
7374 17407 2.202892 GGCGTCCAACTCCGATCC 60.203 66.667 0.00 0.00 0.00 3.36
7375 17408 2.577059 GCGTCCAACTCCGATCCA 59.423 61.111 0.00 0.00 0.00 3.41
7376 17409 1.810030 GCGTCCAACTCCGATCCAC 60.810 63.158 0.00 0.00 0.00 4.02
7377 17410 1.153628 CGTCCAACTCCGATCCACC 60.154 63.158 0.00 0.00 0.00 4.61
7409 17442 4.687769 GCCACCGATAAGAAAGGGGAATTA 60.688 45.833 0.00 0.00 0.00 1.40
7753 17843 1.922447 TGAGCAACCCCCAGTATTCAT 59.078 47.619 0.00 0.00 0.00 2.57
8070 18188 1.370414 CGCAGCACCCTTTGTTTCG 60.370 57.895 0.00 0.00 0.00 3.46
8101 18219 2.627515 ATGCTTGTGGATGCGTCTAT 57.372 45.000 5.77 0.00 0.00 1.98
8140 18265 2.951642 TGAAAGGTGGAAGAAGTTGCTG 59.048 45.455 0.00 0.00 0.00 4.41
8641 19047 9.667107 CAGTTATCTGTTTCCCTTCATAGTTAA 57.333 33.333 0.00 0.00 36.97 2.01
8774 19180 7.338800 ACTCATTATCACAATTGACCATTCC 57.661 36.000 13.59 0.00 33.38 3.01
8829 19236 3.263425 TCCTTGTGGGAGAGGTAATCAAC 59.737 47.826 0.00 0.00 39.58 3.18
8875 19282 4.213564 TGTTTTGTTTGTTCCATTGGCT 57.786 36.364 0.00 0.00 0.00 4.75
8929 19339 7.902387 AACTATGACATAGCTTATGCATCAG 57.098 36.000 20.26 2.10 42.74 2.90
8939 19349 8.724229 CATAGCTTATGCATCAGCTGTTATTTA 58.276 33.333 35.00 19.72 46.18 1.40
8994 19404 6.377996 TCACAGCATTTAATTGCAAGGACTAT 59.622 34.615 20.97 0.00 45.23 2.12
9158 20104 1.443802 GTGTGCTTTGAGGCCTAGAC 58.556 55.000 4.42 0.00 0.00 2.59
9186 20133 5.528690 CCGGCCCAATACATGAATATATCAG 59.471 44.000 0.00 0.00 42.53 2.90
9362 20317 1.675641 GGCCACCAACGCTTCTCAT 60.676 57.895 0.00 0.00 0.00 2.90
9371 20326 0.322816 ACGCTTCTCATTGCCCATGT 60.323 50.000 0.00 0.00 34.06 3.21
9375 20330 0.896923 TTCTCATTGCCCATGTTGCC 59.103 50.000 2.39 0.00 34.06 4.52
9376 20331 0.971959 TCTCATTGCCCATGTTGCCC 60.972 55.000 2.39 0.00 34.06 5.36
9377 20332 1.963464 CTCATTGCCCATGTTGCCCC 61.963 60.000 2.39 0.00 34.06 5.80
9378 20333 2.122280 ATTGCCCATGTTGCCCCA 59.878 55.556 2.39 0.00 0.00 4.96
9392 20347 4.020617 CCCAGCAAGAGCCGGTGA 62.021 66.667 1.90 0.00 43.56 4.02
9418 20391 1.600413 GCTACTTTGTGTTGCTGCACC 60.600 52.381 0.00 0.00 42.58 5.01
9431 20404 1.686115 GCTGCACCAGGGACCAAATAT 60.686 52.381 0.00 0.00 31.21 1.28
9433 20406 3.480470 CTGCACCAGGGACCAAATATAG 58.520 50.000 0.00 0.00 0.00 1.31
9436 20409 4.663120 TGCACCAGGGACCAAATATAGTAT 59.337 41.667 0.00 0.00 0.00 2.12
9451 20424 6.665992 ATATAGTATGGGAAGCAAGTTCGA 57.334 37.500 0.00 0.00 35.80 3.71
9621 20594 5.525378 ACGCTGGCTCATCTAAATTTTCTAG 59.475 40.000 0.00 0.00 0.00 2.43
9682 20655 5.893255 TGCAATTTTCCTAATGCCTGATACT 59.107 36.000 0.00 0.00 38.00 2.12
9800 20773 5.399301 GTGATTCATTGTCTTGTTTGTTCCG 59.601 40.000 0.00 0.00 0.00 4.30
9804 20777 0.380378 TGTCTTGTTTGTTCCGCTGC 59.620 50.000 0.00 0.00 0.00 5.25
9805 20778 0.663153 GTCTTGTTTGTTCCGCTGCT 59.337 50.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.857656 TCTCATCCATTAAATAAAGCAGAAGAT 57.142 29.630 0.00 0.00 0.00 2.40
180 184 8.242085 TGAAATGTTTGTGAAATATGCATGTC 57.758 30.769 10.16 4.70 0.00 3.06
253 262 9.354673 GAGGGGAATGATATTTGAAAGAACATA 57.645 33.333 0.00 0.00 0.00 2.29
614 4521 1.067425 TCACCCGTCATCGTAAGTTGG 60.067 52.381 0.00 0.00 37.64 3.77
765 4719 3.350833 GCCTGTGAAATGGTCATCTTCT 58.649 45.455 0.00 0.00 38.90 2.85
960 5399 3.849951 GGGCGGAAGAGGCGATCA 61.850 66.667 0.00 0.00 37.59 2.92
1005 5459 2.055042 CGGAGGAGGGAGAGTGGTG 61.055 68.421 0.00 0.00 0.00 4.17
1587 6216 5.994054 GTGCTATCATGACCACTATGAATGT 59.006 40.000 0.00 0.00 38.01 2.71
1649 6278 1.815003 GCTTGCCATTGTCTAGTGCTT 59.185 47.619 0.00 0.00 0.00 3.91
1655 6284 1.456296 CAGCAGCTTGCCATTGTCTA 58.544 50.000 0.00 0.00 46.52 2.59
1812 6451 0.898789 ATCCTTCGGGTGTCAGACGT 60.899 55.000 0.00 0.00 36.28 4.34
1816 6455 0.176680 CTCCATCCTTCGGGTGTCAG 59.823 60.000 0.00 0.00 36.28 3.51
2439 7165 7.148474 CGATTTTCTCCGGAAAGTGATTAGAAA 60.148 37.037 5.23 5.60 41.66 2.52
3239 8901 4.997395 ACGAGTCATGAGCACTTTTATGTT 59.003 37.500 0.00 0.00 0.00 2.71
3508 9262 5.230516 CGTCAAAACCATGCATTGATGTATG 59.769 40.000 13.14 13.14 46.27 2.39
3971 9828 4.329545 GTCCGGCAGACCAAGGCA 62.330 66.667 0.00 0.00 39.84 4.75
4056 9914 7.504911 AGATGCAAGCAATTAAGATGGACTAAT 59.495 33.333 0.00 0.00 0.00 1.73
4350 10239 7.412853 AGATCTACTTCCTCTGTCCTAAAAC 57.587 40.000 0.00 0.00 0.00 2.43
4725 10780 6.059484 TGGGGGTTCTCGTTTTTCATATATC 58.941 40.000 0.00 0.00 0.00 1.63
5086 11506 3.339093 CCACTTCCACCCCCTCCC 61.339 72.222 0.00 0.00 0.00 4.30
5087 11507 4.048470 GCCACTTCCACCCCCTCC 62.048 72.222 0.00 0.00 0.00 4.30
5088 11508 2.936032 AGCCACTTCCACCCCCTC 60.936 66.667 0.00 0.00 0.00 4.30
5089 11509 3.260100 CAGCCACTTCCACCCCCT 61.260 66.667 0.00 0.00 0.00 4.79
5091 11511 3.513750 AAGCAGCCACTTCCACCCC 62.514 63.158 0.00 0.00 0.00 4.95
5092 11512 1.973812 GAAGCAGCCACTTCCACCC 60.974 63.158 5.24 0.00 40.18 4.61
5093 11513 2.328099 CGAAGCAGCCACTTCCACC 61.328 63.158 9.96 0.00 42.57 4.61
5094 11514 2.328099 CCGAAGCAGCCACTTCCAC 61.328 63.158 9.96 0.00 42.57 4.02
5095 11515 2.032528 CCGAAGCAGCCACTTCCA 59.967 61.111 9.96 0.00 42.57 3.53
5096 11516 2.747855 CCCGAAGCAGCCACTTCC 60.748 66.667 9.96 0.00 42.57 3.46
5097 11517 2.032681 ACCCGAAGCAGCCACTTC 59.967 61.111 6.30 6.30 42.20 3.01
5098 11518 2.032681 GACCCGAAGCAGCCACTT 59.967 61.111 0.00 0.00 0.00 3.16
5099 11519 4.379243 CGACCCGAAGCAGCCACT 62.379 66.667 0.00 0.00 0.00 4.00
5100 11520 4.681978 ACGACCCGAAGCAGCCAC 62.682 66.667 0.00 0.00 0.00 5.01
5101 11521 4.373116 GACGACCCGAAGCAGCCA 62.373 66.667 0.00 0.00 0.00 4.75
5103 11523 3.591254 AAGGACGACCCGAAGCAGC 62.591 63.158 0.00 0.00 40.87 5.25
5104 11524 1.738099 CAAGGACGACCCGAAGCAG 60.738 63.158 0.00 0.00 40.87 4.24
5105 11525 2.342279 CAAGGACGACCCGAAGCA 59.658 61.111 0.00 0.00 40.87 3.91
5106 11526 2.434359 CCAAGGACGACCCGAAGC 60.434 66.667 0.00 0.00 40.87 3.86
5107 11527 2.434359 GCCAAGGACGACCCGAAG 60.434 66.667 0.00 0.00 40.87 3.79
5108 11528 4.367023 CGCCAAGGACGACCCGAA 62.367 66.667 0.00 0.00 40.87 4.30
5136 11921 2.598565 TCTAGAGTCCCAGCGCATATT 58.401 47.619 11.47 0.00 0.00 1.28
5153 11938 4.321156 GCAGGACACAAACATGCAAATCTA 60.321 41.667 0.00 0.00 43.12 1.98
5159 11945 1.462731 GGGCAGGACACAAACATGCA 61.463 55.000 0.00 0.00 44.96 3.96
5211 12277 0.952497 CGTGAGCACATTCCTGCACT 60.952 55.000 1.20 0.00 39.86 4.40
5219 12285 0.033504 AACCTCGACGTGAGCACATT 59.966 50.000 0.00 0.00 43.82 2.71
5299 12366 1.227823 CACAAACCTGAGTCCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
5564 12679 4.690719 CGCCTGCACCGGTACCAA 62.691 66.667 6.87 0.00 0.00 3.67
5577 12696 3.157217 GAGGACGCCATCATCGCCT 62.157 63.158 0.00 0.00 36.62 5.52
5645 12765 1.935873 CATCACATTGCAGAGGTACGG 59.064 52.381 0.00 0.00 0.00 4.02
5657 12777 1.209898 CGCACGGCAACATCACATT 59.790 52.632 0.00 0.00 0.00 2.71
5724 12860 2.588620 CTCCGACTTCCATACTAGCCT 58.411 52.381 0.00 0.00 0.00 4.58
5755 12891 3.161067 CCCATCCATGACGACTAGATCT 58.839 50.000 0.00 0.00 0.00 2.75
5799 12935 1.066858 AGACTGGCCAACGATACTGTG 60.067 52.381 7.01 0.00 0.00 3.66
5840 12976 1.647545 CGCCGCTTCAACATCCACAT 61.648 55.000 0.00 0.00 0.00 3.21
5841 12977 2.324330 CGCCGCTTCAACATCCACA 61.324 57.895 0.00 0.00 0.00 4.17
5978 13116 1.613928 TACAACCATCCCGGAGCCA 60.614 57.895 0.73 0.00 38.63 4.75
6120 13261 2.186903 GCCGACACCGTCATCCAT 59.813 61.111 0.00 0.00 32.09 3.41
6212 13353 6.384305 ACCAGAGCTAACATCCTACAACTATT 59.616 38.462 0.00 0.00 0.00 1.73
6224 13365 1.550524 TCGAGCAACCAGAGCTAACAT 59.449 47.619 0.00 0.00 43.58 2.71
6328 13469 3.876589 GAGCAACCCGAGCCGACAA 62.877 63.158 0.00 0.00 0.00 3.18
6376 13517 2.700371 CACATACAGACCTGAGGCCATA 59.300 50.000 5.01 0.00 0.00 2.74
6551 13709 5.747197 GCAGTTTCCTATTGATTGCTTCATG 59.253 40.000 0.00 0.00 33.34 3.07
6589 13747 8.949421 AGAAAAGAGAGCCCTGGAAATATTATA 58.051 33.333 0.00 0.00 0.00 0.98
6624 13782 7.500992 CCAGACAGAGGCATCTTAAGTATAAA 58.499 38.462 0.00 0.00 31.64 1.40
6699 13860 4.876107 TGTGACCAGAAAAAGACTGACTTC 59.124 41.667 0.00 0.00 37.93 3.01
6709 13870 7.669304 TGGATCTGAAATATGTGACCAGAAAAA 59.331 33.333 0.00 0.00 37.41 1.94
6710 13871 7.174413 TGGATCTGAAATATGTGACCAGAAAA 58.826 34.615 0.00 0.00 37.41 2.29
6746 13912 4.642429 AGCAATTATCCCATCGGTAAGAC 58.358 43.478 0.00 0.00 0.00 3.01
6829 14005 7.488471 ACACATTTCAGAGTTTATACGAGCTAC 59.512 37.037 0.00 0.00 0.00 3.58
6893 14071 8.788806 TCTGAACAAAAACAAGACAAGAAGTTA 58.211 29.630 0.00 0.00 0.00 2.24
6894 14072 7.657336 TCTGAACAAAAACAAGACAAGAAGTT 58.343 30.769 0.00 0.00 0.00 2.66
6895 14073 7.214467 TCTGAACAAAAACAAGACAAGAAGT 57.786 32.000 0.00 0.00 0.00 3.01
6896 14074 8.693542 AATCTGAACAAAAACAAGACAAGAAG 57.306 30.769 0.00 0.00 0.00 2.85
6897 14075 7.484641 CGAATCTGAACAAAAACAAGACAAGAA 59.515 33.333 0.00 0.00 0.00 2.52
7207 17213 9.331282 CATACTAGGGAAAGAAATCTTAACCAG 57.669 37.037 14.65 12.28 35.54 4.00
7209 17215 9.327628 GTCATACTAGGGAAAGAAATCTTAACC 57.672 37.037 0.00 2.51 34.61 2.85
7215 17221 7.201617 CCGTTTGTCATACTAGGGAAAGAAATC 60.202 40.741 0.00 0.00 0.00 2.17
7220 17226 3.621715 GCCGTTTGTCATACTAGGGAAAG 59.378 47.826 0.00 0.00 0.00 2.62
7223 17229 1.483415 GGCCGTTTGTCATACTAGGGA 59.517 52.381 0.00 0.00 0.00 4.20
7226 17232 2.460918 CGAGGCCGTTTGTCATACTAG 58.539 52.381 0.00 0.00 0.00 2.57
7227 17233 2.572191 CGAGGCCGTTTGTCATACTA 57.428 50.000 0.00 0.00 0.00 1.82
7228 17234 3.436001 CGAGGCCGTTTGTCATACT 57.564 52.632 0.00 0.00 0.00 2.12
7242 17256 4.394712 GGCCACAGTGGGACGAGG 62.395 72.222 21.77 0.00 38.19 4.63
7252 17266 4.704833 CTGGGTCACGGGCCACAG 62.705 72.222 4.39 0.00 0.00 3.66
7367 17400 1.832608 CATCGGGAGGTGGATCGGA 60.833 63.158 0.00 0.00 37.31 4.55
7368 17401 2.737180 CATCGGGAGGTGGATCGG 59.263 66.667 0.00 0.00 37.31 4.18
7374 17407 4.489771 GGTGGCCATCGGGAGGTG 62.490 72.222 9.72 0.00 41.79 4.00
7377 17410 1.754380 TTATCGGTGGCCATCGGGAG 61.754 60.000 36.55 10.63 35.26 4.30
7409 17442 1.305297 TGGGATCTCCGTCAGCAGT 60.305 57.895 0.00 0.00 38.76 4.40
7484 17571 2.106131 CCATCGGTGGCGATTCGA 59.894 61.111 10.88 0.45 39.01 3.71
8070 18188 1.002468 CACAAGCATAATAGTGCCCGC 60.002 52.381 0.00 0.00 46.19 6.13
8101 18219 5.010922 CCTTTCATTTGTCATCCACTTCCAA 59.989 40.000 0.00 0.00 0.00 3.53
8140 18265 2.068834 TCCTCCGAGTATCCAGAACC 57.931 55.000 0.00 0.00 0.00 3.62
8875 19282 5.745294 GCCGTATCTGACTATCGTTAAAACA 59.255 40.000 0.00 0.00 0.00 2.83
8929 19339 9.162764 TGAATTGACTAGACCTTAAATAACAGC 57.837 33.333 0.00 0.00 0.00 4.40
8939 19349 7.014615 AGCAATTTTGTGAATTGACTAGACCTT 59.985 33.333 13.88 0.00 39.36 3.50
9320 20275 1.800315 GCAAGCACATGAAGCAGCG 60.800 57.895 15.23 5.99 0.00 5.18
9362 20317 2.604079 CTGGGGCAACATGGGCAA 60.604 61.111 12.79 0.00 39.74 4.52
9377 20332 2.743928 GGTCACCGGCTCTTGCTG 60.744 66.667 0.00 0.00 44.81 4.41
9378 20333 4.379243 CGGTCACCGGCTCTTGCT 62.379 66.667 8.94 0.00 44.15 3.91
9388 20343 0.250166 ACAAAGTAGCACCGGTCACC 60.250 55.000 2.59 0.00 0.00 4.02
9390 20345 0.466543 ACACAAAGTAGCACCGGTCA 59.533 50.000 2.59 0.00 0.00 4.02
9391 20346 1.263217 CAACACAAAGTAGCACCGGTC 59.737 52.381 2.59 0.00 0.00 4.79
9392 20347 1.305201 CAACACAAAGTAGCACCGGT 58.695 50.000 0.00 0.00 0.00 5.28
9418 20391 6.448369 TTCCCATACTATATTTGGTCCCTG 57.552 41.667 0.00 0.00 0.00 4.45
9431 20404 3.512329 TGTCGAACTTGCTTCCCATACTA 59.488 43.478 0.00 0.00 0.00 1.82
9433 20406 2.695359 TGTCGAACTTGCTTCCCATAC 58.305 47.619 0.00 0.00 0.00 2.39
9436 20409 2.151202 GATTGTCGAACTTGCTTCCCA 58.849 47.619 0.00 0.00 0.00 4.37
9451 20424 2.906389 TCACTGCTCTACCCAAGATTGT 59.094 45.455 0.00 0.00 32.41 2.71
9636 20609 5.709164 GCATGATAACTATGAAGGGAAGCAT 59.291 40.000 0.00 0.00 0.00 3.79
9658 20631 5.893255 AGTATCAGGCATTAGGAAAATTGCA 59.107 36.000 0.00 0.00 0.00 4.08
9700 20673 9.559958 CACTACCAAATCATGTAAACAAGAATC 57.440 33.333 0.00 0.00 0.00 2.52
9800 20773 6.969473 GTCTGGTTATCTTAAAAATGAGCAGC 59.031 38.462 12.79 0.00 37.84 5.25
9805 20778 9.567776 TGTCTTGTCTGGTTATCTTAAAAATGA 57.432 29.630 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.