AutoCloner

Multiple sequence alignment - TraesCS7D01G502000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G502000	chr7D	100.000	3188	0	0	1	3188	607599126	607595939	0.000000e+00	5888
1	TraesCS7D01G502000	chr7D	97.964	3144	34	12	73	3188	608535863	608532722	0.000000e+00	5424
2	TraesCS7D01G502000	chr7D	78.703	1141	197	26	1002	2111	608513984	608512859	0.000000e+00	719
3	TraesCS7D01G502000	chr7D	76.412	1098	143	48	2149	3177	608500732	608499682	1.330000e-133	486
4	TraesCS7D01G502000	chr7D	80.761	447	67	13	1032	1464	514758678	514758237	6.590000e-87	331
5	TraesCS7D01G502000	chr7D	77.928	444	60	16	1055	1464	600218400	600218839	3.180000e-60	243
6	TraesCS7D01G502000	chrUn	89.276	3189	242	44	77	3188	83387738	83384573	0.000000e+00	3903
7	TraesCS7D01G502000	chrUn	79.327	416	75	10	1023	1431	77772842	77773253	6.730000e-72	281
8	TraesCS7D01G502000	chrUn	96.875	64	1	1	1	64	56704062	56704124	4.350000e-19	106
9	TraesCS7D01G502000	chrUn	95.522	67	2	1	1	67	236758138	236758073	4.350000e-19	106
10	TraesCS7D01G502000	chrUn	95.522	67	2	1	1	67	236772751	236772686	4.350000e-19	106
11	TraesCS7D01G502000	chrUn	95.522	67	2	1	1	67	273591602	273591537	4.350000e-19	106
12	TraesCS7D01G502000	chrUn	100.000	40	0	0	819	858	83386935	83386896	1.230000e-09	75
13	TraesCS7D01G502000	chr7B	90.340	1646	88	25	1417	3002	696832187	696830553	0.000000e+00	2093
14	TraesCS7D01G502000	chr7B	90.789	532	49	0	881	1412	696841035	696840504	0.000000e+00	712
15	TraesCS7D01G502000	chr7B	85.870	552	52	11	75	624	696848612	696848085	5.970000e-157	564
16	TraesCS7D01G502000	chr7B	80.430	419	70	10	1020	1432	697422840	697423252	3.090000e-80	309
17	TraesCS7D01G502000	chr7B	79.762	420	71	12	1020	1432	685048569	685048981	3.110000e-75	292
18	TraesCS7D01G502000	chr7B	89.051	137	7	1	725	853	696841308	696841172	2.540000e-36	163
19	TraesCS7D01G502000	chr7B	95.522	67	2	1	1	67	97218915	97218850	4.350000e-19	106
20	TraesCS7D01G502000	chr7B	77.778	198	26	8	2401	2586	685240066	685239875	4.350000e-19	106
21	TraesCS7D01G502000	chr7A	77.411	757	140	17	1276	2009	699790640	699789892	3.800000e-114	422
22	TraesCS7D01G502000	chr7A	80.098	407	69	11	1031	1431	700160733	700160333	3.110000e-75	292
23	TraesCS7D01G502000	chr7A	78.870	407	78	8	1031	1432	700074306	700073903	5.240000e-68	268
24	TraesCS7D01G502000	chr7A	77.354	446	90	8	1020	1464	700091889	700091454	1.470000e-63	254
25	TraesCS7D01G502000	chr6D	95.522	67	2	1	1	67	183370193	183370128	4.350000e-19	106
26	TraesCS7D01G502000	chr4B	95.522	67	2	1	1	67	46893519	46893454	4.350000e-19	106
27	TraesCS7D01G502000	chr4B	95.522	67	2	1	1	67	125735756	125735691	4.350000e-19	106
28	TraesCS7D01G502000	chr4B	95.522	67	2	1	1	67	359216246	359216181	4.350000e-19	106

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G502000	chr7D	607595939	607599126	3187	True	5888.0	5888	100.000	1	3188	1	chr7D.!!$R2	3187
1	TraesCS7D01G502000	chr7D	608532722	608535863	3141	True	5424.0	5424	97.964	73	3188	1	chr7D.!!$R5	3115
2	TraesCS7D01G502000	chr7D	608512859	608513984	1125	True	719.0	719	78.703	1002	2111	1	chr7D.!!$R4	1109
3	TraesCS7D01G502000	chr7D	608499682	608500732	1050	True	486.0	486	76.412	2149	3177	1	chr7D.!!$R3	1028
4	TraesCS7D01G502000	chrUn	83384573	83387738	3165	True	1989.0	3903	94.638	77	3188	2	chrUn.!!$R4	3111
5	TraesCS7D01G502000	chr7B	696830553	696832187	1634	True	2093.0	2093	90.340	1417	3002	1	chr7B.!!$R3	1585
6	TraesCS7D01G502000	chr7B	696848085	696848612	527	True	564.0	564	85.870	75	624	1	chr7B.!!$R4	549
7	TraesCS7D01G502000	chr7B	696840504	696841308	804	True	437.5	712	89.920	725	1412	2	chr7B.!!$R5	687
8	TraesCS7D01G502000	chr7A	699789892	699790640	748	True	422.0	422	77.411	1276	2009	1	chr7A.!!$R1	733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
217	219	0.261109	ACCTTCCCTACCCTACCTCG	59.739	60.0	0.0	0.0	0.0	4.63	F
372	374	2.765705	ATCCCCGACCACCTCCAAGT	62.766	60.0	0.0	0.0	0.0	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2010	2241	1.307097	CTACGTACGGCCTAGCTTCT	58.693	55.0	21.06	0.00	0.00	2.85	R
2594	2871	6.617879	AGATGTGAACATGAACATGAACATG	58.382	36.0	24.20	23.82	46.11	3.21	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	4.590487	GGTCTTCGTGCCGATGAA	57.410	55.556	12.42	0.00	40.60	2.57
18	19	2.835605	GGTCTTCGTGCCGATGAAA	58.164	52.632	12.42	0.00	40.60	2.69
19	20	0.442699	GGTCTTCGTGCCGATGAAAC	59.557	55.000	12.42	7.33	40.60	2.78
20	21	1.429463	GTCTTCGTGCCGATGAAACT	58.571	50.000	12.42	0.00	40.60	2.66
21	22	1.798813	GTCTTCGTGCCGATGAAACTT	59.201	47.619	12.42	0.00	40.60	2.66
22	23	2.991190	GTCTTCGTGCCGATGAAACTTA	59.009	45.455	12.42	0.00	40.60	2.24
23	24	2.991190	TCTTCGTGCCGATGAAACTTAC	59.009	45.455	9.60	0.00	37.17	2.34
24	25	2.736144	TCGTGCCGATGAAACTTACT	57.264	45.000	0.00	0.00	0.00	2.24
25	26	3.853831	TCGTGCCGATGAAACTTACTA	57.146	42.857	0.00	0.00	0.00	1.82
26	27	3.766151	TCGTGCCGATGAAACTTACTAG	58.234	45.455	0.00	0.00	0.00	2.57
27	28	2.281762	CGTGCCGATGAAACTTACTAGC	59.718	50.000	0.00	0.00	0.00	3.42
28	29	3.522553	GTGCCGATGAAACTTACTAGCT	58.477	45.455	0.00	0.00	0.00	3.32
29	30	4.679662	GTGCCGATGAAACTTACTAGCTA	58.320	43.478	0.00	0.00	0.00	3.32
30	31	5.290386	GTGCCGATGAAACTTACTAGCTAT	58.710	41.667	0.00	0.00	0.00	2.97
31	32	6.444633	GTGCCGATGAAACTTACTAGCTATA	58.555	40.000	0.00	0.00	0.00	1.31
32	33	6.583050	GTGCCGATGAAACTTACTAGCTATAG	59.417	42.308	0.00	0.00	34.96	1.31
33	34	6.094061	GCCGATGAAACTTACTAGCTATAGG	58.906	44.000	1.04	0.00	32.90	2.57
34	35	6.294620	GCCGATGAAACTTACTAGCTATAGGT	60.295	42.308	9.78	9.78	32.90	3.08
35	36	7.085116	CCGATGAAACTTACTAGCTATAGGTG	58.915	42.308	14.72	7.18	32.90	4.00
36	37	7.255520	CCGATGAAACTTACTAGCTATAGGTGT	60.256	40.741	14.72	12.18	32.90	4.16
37	38	7.804129	CGATGAAACTTACTAGCTATAGGTGTC	59.196	40.741	14.72	2.00	32.90	3.67
38	39	7.949690	TGAAACTTACTAGCTATAGGTGTCA	57.050	36.000	14.72	11.13	32.90	3.58
39	40	8.357290	TGAAACTTACTAGCTATAGGTGTCAA	57.643	34.615	14.72	4.59	32.90	3.18
40	41	8.978472	TGAAACTTACTAGCTATAGGTGTCAAT	58.022	33.333	14.72	0.00	32.90	2.57
41	42	9.465985	GAAACTTACTAGCTATAGGTGTCAATC	57.534	37.037	14.72	0.09	32.90	2.67
42	43	8.534954	AACTTACTAGCTATAGGTGTCAATCA	57.465	34.615	14.72	0.00	32.90	2.57
43	44	8.713708	ACTTACTAGCTATAGGTGTCAATCAT	57.286	34.615	14.72	0.00	32.90	2.45
44	45	8.798402	ACTTACTAGCTATAGGTGTCAATCATC	58.202	37.037	14.72	0.00	32.90	2.92
45	46	8.706322	TTACTAGCTATAGGTGTCAATCATCA	57.294	34.615	14.72	0.00	32.90	3.07
46	47	7.225784	ACTAGCTATAGGTGTCAATCATCAG	57.774	40.000	14.72	2.48	32.90	2.90
47	48	6.780031	ACTAGCTATAGGTGTCAATCATCAGT	59.220	38.462	14.72	3.10	32.90	3.41
48	49	7.945109	ACTAGCTATAGGTGTCAATCATCAGTA	59.055	37.037	14.72	0.00	32.90	2.74
49	50	7.789202	AGCTATAGGTGTCAATCATCAGTAT	57.211	36.000	3.03	0.00	0.00	2.12
50	51	7.609960	AGCTATAGGTGTCAATCATCAGTATG	58.390	38.462	3.03	0.00	37.54	2.39
51	52	6.312426	GCTATAGGTGTCAATCATCAGTATGC	59.688	42.308	1.04	0.00	34.76	3.14
52	53	3.461061	AGGTGTCAATCATCAGTATGCG	58.539	45.455	0.00	0.00	34.76	4.73
53	54	3.118629	AGGTGTCAATCATCAGTATGCGT	60.119	43.478	0.00	0.00	34.76	5.24
54	55	4.099419	AGGTGTCAATCATCAGTATGCGTA	59.901	41.667	0.00	0.00	34.76	4.42
55	56	4.808895	GGTGTCAATCATCAGTATGCGTAA	59.191	41.667	0.00	0.00	34.76	3.18
56	57	5.276868	GGTGTCAATCATCAGTATGCGTAAC	60.277	44.000	0.00	0.00	34.76	2.50
57	58	4.808895	TGTCAATCATCAGTATGCGTAACC	59.191	41.667	0.00	0.00	34.76	2.85
58	59	4.808895	GTCAATCATCAGTATGCGTAACCA	59.191	41.667	0.00	0.00	34.76	3.67
59	60	4.808895	TCAATCATCAGTATGCGTAACCAC	59.191	41.667	0.00	0.00	34.76	4.16
60	61	3.878160	TCATCAGTATGCGTAACCACA	57.122	42.857	0.00	0.00	34.76	4.17
61	62	4.400529	TCATCAGTATGCGTAACCACAT	57.599	40.909	0.00	0.00	34.76	3.21
62	63	5.523438	TCATCAGTATGCGTAACCACATA	57.477	39.130	0.00	0.00	34.76	2.29
63	64	6.096673	TCATCAGTATGCGTAACCACATAT	57.903	37.500	0.00	0.00	34.76	1.78
64	65	6.156519	TCATCAGTATGCGTAACCACATATC	58.843	40.000	0.00	0.00	34.76	1.63
65	66	4.878439	TCAGTATGCGTAACCACATATCC	58.122	43.478	0.00	0.00	34.76	2.59
66	67	4.342665	TCAGTATGCGTAACCACATATCCA	59.657	41.667	0.00	0.00	34.76	3.41
67	68	4.686091	CAGTATGCGTAACCACATATCCAG	59.314	45.833	0.00	0.00	31.78	3.86
68	69	1.948104	TGCGTAACCACATATCCAGC	58.052	50.000	0.00	0.00	0.00	4.85
69	70	1.208293	TGCGTAACCACATATCCAGCA	59.792	47.619	0.00	0.00	0.00	4.41
70	71	1.597663	GCGTAACCACATATCCAGCAC	59.402	52.381	0.00	0.00	0.00	4.40
71	72	2.899976	CGTAACCACATATCCAGCACA	58.100	47.619	0.00	0.00	0.00	4.57
160	162	5.641709	CAAGAAAGCTCTATCGTACTGTCA	58.358	41.667	0.00	0.00	0.00	3.58
162	164	6.067263	AGAAAGCTCTATCGTACTGTCATC	57.933	41.667	0.00	0.00	0.00	2.92
177	179	0.909610	TCATCCCGAGGTTCTTGGCT	60.910	55.000	0.00	0.00	33.78	4.75
217	219	0.261109	ACCTTCCCTACCCTACCTCG	59.739	60.000	0.00	0.00	0.00	4.63
372	374	2.765705	ATCCCCGACCACCTCCAAGT	62.766	60.000	0.00	0.00	0.00	3.16
467	471	2.928396	CCCCGACCACCTCCAACT	60.928	66.667	0.00	0.00	0.00	3.16
861	1068	2.902486	TCAACTGAACTCCAGCAGATCT	59.098	45.455	0.00	0.00	46.81	2.75
864	1071	2.902486	ACTGAACTCCAGCAGATCTTCA	59.098	45.455	0.00	0.00	46.81	3.02
865	1072	3.326006	ACTGAACTCCAGCAGATCTTCAA	59.674	43.478	0.00	0.00	46.81	2.69
869	1076	3.406764	ACTCCAGCAGATCTTCAACAAC	58.593	45.455	0.00	0.00	0.00	3.32
2594	2871	2.095364	CACAGCTCATCTTGTTGCCTTC	60.095	50.000	0.00	0.00	0.00	3.46
2597	2874	2.753452	AGCTCATCTTGTTGCCTTCATG	59.247	45.455	0.00	0.00	0.00	3.07
2600	2877	4.730657	CTCATCTTGTTGCCTTCATGTTC	58.269	43.478	0.00	0.00	0.00	3.18
2951	3264	1.741401	CTCCACGAGAATTGCCGCA	60.741	57.895	0.00	0.00	0.00	5.69
2955	3268	1.570813	CACGAGAATTGCCGCATCTA	58.429	50.000	0.00	0.00	0.00	1.98
3182	3511	3.069980	GAGCCAGAGACGATGCGGT	62.070	63.158	0.00	0.00	0.00	5.68

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	3.522553	AGCTAGTAAGTTTCATCGGCAC	58.477	45.455	0.00	0.00	0.00	5.01
8	9	3.887621	AGCTAGTAAGTTTCATCGGCA	57.112	42.857	0.00	0.00	0.00	5.69
9	10	6.094061	CCTATAGCTAGTAAGTTTCATCGGC	58.906	44.000	0.00	0.00	0.00	5.54
10	11	7.085116	CACCTATAGCTAGTAAGTTTCATCGG	58.915	42.308	0.00	0.00	0.00	4.18
11	12	7.649973	ACACCTATAGCTAGTAAGTTTCATCG	58.350	38.462	0.00	0.00	0.00	3.84
12	13	8.630917	TGACACCTATAGCTAGTAAGTTTCATC	58.369	37.037	0.00	0.00	0.00	2.92
13	14	8.534954	TGACACCTATAGCTAGTAAGTTTCAT	57.465	34.615	0.00	0.00	0.00	2.57
14	15	7.949690	TGACACCTATAGCTAGTAAGTTTCA	57.050	36.000	0.00	0.72	0.00	2.69
15	16	9.465985	GATTGACACCTATAGCTAGTAAGTTTC	57.534	37.037	0.00	0.00	0.00	2.78
16	17	8.978472	TGATTGACACCTATAGCTAGTAAGTTT	58.022	33.333	0.00	0.00	0.00	2.66
17	18	8.534954	TGATTGACACCTATAGCTAGTAAGTT	57.465	34.615	0.00	0.00	0.00	2.66
18	19	8.713708	ATGATTGACACCTATAGCTAGTAAGT	57.286	34.615	0.00	0.00	0.00	2.24
19	20	8.797438	TGATGATTGACACCTATAGCTAGTAAG	58.203	37.037	0.00	0.00	0.00	2.34
20	21	8.706322	TGATGATTGACACCTATAGCTAGTAA	57.294	34.615	0.00	0.00	0.00	2.24
21	22	7.945109	ACTGATGATTGACACCTATAGCTAGTA	59.055	37.037	0.00	0.00	0.00	1.82
22	23	6.780031	ACTGATGATTGACACCTATAGCTAGT	59.220	38.462	0.00	0.00	0.00	2.57
23	24	7.225784	ACTGATGATTGACACCTATAGCTAG	57.774	40.000	0.00	0.00	0.00	3.42
24	25	8.743714	CATACTGATGATTGACACCTATAGCTA	58.256	37.037	0.00	0.00	34.73	3.32
25	26	7.609960	CATACTGATGATTGACACCTATAGCT	58.390	38.462	0.00	0.00	34.73	3.32
26	27	6.312426	GCATACTGATGATTGACACCTATAGC	59.688	42.308	0.00	0.00	34.73	2.97
27	28	6.529477	CGCATACTGATGATTGACACCTATAG	59.471	42.308	0.00	0.00	34.73	1.31
28	29	6.015434	ACGCATACTGATGATTGACACCTATA	60.015	38.462	0.00	0.00	34.73	1.31
29	30	5.221521	ACGCATACTGATGATTGACACCTAT	60.222	40.000	0.00	0.00	34.73	2.57
30	31	4.099419	ACGCATACTGATGATTGACACCTA	59.901	41.667	0.00	0.00	34.73	3.08
31	32	3.118629	ACGCATACTGATGATTGACACCT	60.119	43.478	0.00	0.00	34.73	4.00
32	33	3.198068	ACGCATACTGATGATTGACACC	58.802	45.455	0.00	0.00	34.73	4.16
33	34	5.276868	GGTTACGCATACTGATGATTGACAC	60.277	44.000	0.00	0.00	34.73	3.67
34	35	4.808895	GGTTACGCATACTGATGATTGACA	59.191	41.667	0.00	0.00	34.73	3.58
35	36	4.808895	TGGTTACGCATACTGATGATTGAC	59.191	41.667	0.00	0.00	34.73	3.18
36	37	4.808895	GTGGTTACGCATACTGATGATTGA	59.191	41.667	0.00	0.00	34.73	2.57
37	38	4.570369	TGTGGTTACGCATACTGATGATTG	59.430	41.667	0.00	0.00	34.73	2.67
38	39	4.765273	TGTGGTTACGCATACTGATGATT	58.235	39.130	0.00	0.00	34.73	2.57
39	40	4.400529	TGTGGTTACGCATACTGATGAT	57.599	40.909	0.00	0.00	34.73	2.45
40	41	3.878160	TGTGGTTACGCATACTGATGA	57.122	42.857	0.00	0.00	34.73	2.92
49	50	1.208293	TGCTGGATATGTGGTTACGCA	59.792	47.619	0.00	0.00	42.06	5.24
50	51	1.597663	GTGCTGGATATGTGGTTACGC	59.402	52.381	0.00	0.00	0.00	4.42
51	52	2.899976	TGTGCTGGATATGTGGTTACG	58.100	47.619	0.00	0.00	0.00	3.18
52	53	4.273480	GTCATGTGCTGGATATGTGGTTAC	59.727	45.833	5.86	0.00	0.00	2.50
53	54	4.450976	GTCATGTGCTGGATATGTGGTTA	58.549	43.478	5.86	0.00	0.00	2.85
54	55	3.282021	GTCATGTGCTGGATATGTGGTT	58.718	45.455	5.86	0.00	0.00	3.67
55	56	2.742856	CGTCATGTGCTGGATATGTGGT	60.743	50.000	5.86	0.00	0.00	4.16
56	57	1.869132	CGTCATGTGCTGGATATGTGG	59.131	52.381	5.86	0.00	0.00	4.17
57	58	1.262417	GCGTCATGTGCTGGATATGTG	59.738	52.381	5.86	2.18	0.00	3.21
58	59	1.586422	GCGTCATGTGCTGGATATGT	58.414	50.000	5.86	0.00	0.00	2.29
59	60	0.870393	GGCGTCATGTGCTGGATATG	59.130	55.000	11.43	0.00	0.00	1.78
60	61	0.761187	AGGCGTCATGTGCTGGATAT	59.239	50.000	11.43	0.00	0.00	1.63
61	62	1.408969	TAGGCGTCATGTGCTGGATA	58.591	50.000	11.43	0.39	0.00	2.59
62	63	0.761187	ATAGGCGTCATGTGCTGGAT	59.239	50.000	11.43	2.26	0.00	3.41
63	64	0.541392	AATAGGCGTCATGTGCTGGA	59.459	50.000	11.43	0.34	0.00	3.86
64	65	1.331756	GAAATAGGCGTCATGTGCTGG	59.668	52.381	11.43	0.00	0.00	4.85
65	66	2.009051	TGAAATAGGCGTCATGTGCTG	58.991	47.619	11.43	0.00	0.00	4.41
66	67	2.283298	CTGAAATAGGCGTCATGTGCT	58.717	47.619	11.43	2.64	0.00	4.40
67	68	1.268234	GCTGAAATAGGCGTCATGTGC	60.268	52.381	4.42	4.42	0.00	4.57
68	69	1.004610	CGCTGAAATAGGCGTCATGTG	60.005	52.381	0.00	0.00	45.34	3.21
69	70	1.290203	CGCTGAAATAGGCGTCATGT	58.710	50.000	0.00	0.00	45.34	3.21
160	162	1.201429	ACAGCCAAGAACCTCGGGAT	61.201	55.000	0.00	0.00	0.00	3.85
162	164	1.376037	GACAGCCAAGAACCTCGGG	60.376	63.158	0.00	0.00	0.00	5.14
177	179	1.758440	AAGGTGCGGAAGAGCTGACA	61.758	55.000	0.00	0.00	38.13	3.58
217	219	0.889186	TTTCCTTGTCGGCCTTGAGC	60.889	55.000	0.00	0.00	42.60	4.26
372	374	5.178996	GCGAGTAGTCAGACGGATATCTTTA	59.821	44.000	2.05	0.00	0.00	1.85
467	471	3.884091	GAGTAGCCGGACAAAGATCTCTA	59.116	47.826	5.05	0.00	0.00	2.43
1483	1693	6.070656	TGTTGGGTGAAATGAAGAAGAGAAT	58.929	36.000	0.00	0.00	0.00	2.40
1486	1696	5.278660	CCTTGTTGGGTGAAATGAAGAAGAG	60.279	44.000	0.00	0.00	0.00	2.85
1487	1697	4.584325	CCTTGTTGGGTGAAATGAAGAAGA	59.416	41.667	0.00	0.00	0.00	2.87
1492	1717	2.676748	AGCCTTGTTGGGTGAAATGAA	58.323	42.857	0.00	0.00	46.19	2.57
2010	2241	1.307097	CTACGTACGGCCTAGCTTCT	58.693	55.000	21.06	0.00	0.00	2.85
2594	2871	6.617879	AGATGTGAACATGAACATGAACATG	58.382	36.000	24.20	23.82	46.11	3.21
2597	2874	7.977904	TCATAGATGTGAACATGAACATGAAC	58.022	34.615	19.56	14.24	41.20	3.18
2951	3264	5.005094	GCGTACTGGAGAGATAAGGTAGAT	58.995	45.833	0.00	0.00	0.00	1.98
2955	3268	2.308690	GGCGTACTGGAGAGATAAGGT	58.691	52.381	0.00	0.00	0.00	3.50
3140	3469	3.059982	CCTGACTTGTCTCCGCCA	58.940	61.111	2.35	0.00	0.00	5.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.