Multiple sequence alignment - TraesCS7D01G500900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G500900 chr7D 100.000 5807 0 0 853 6659 607037495 607043301 0.000000e+00 10724.0
1 TraesCS7D01G500900 chr7D 100.000 576 0 0 1 576 607036643 607037218 0.000000e+00 1064.0
2 TraesCS7D01G500900 chr7D 82.735 446 52 13 3712 4154 598026564 598026141 2.270000e-99 374.0
3 TraesCS7D01G500900 chr7D 94.444 198 11 0 6456 6653 607043037 607043234 8.390000e-79 305.0
4 TraesCS7D01G500900 chr7D 94.444 198 11 0 6395 6592 607043098 607043295 8.390000e-79 305.0
5 TraesCS7D01G500900 chr7D 84.071 226 34 2 4283 4508 598026071 598025848 4.040000e-52 217.0
6 TraesCS7D01G500900 chr7B 95.897 3705 85 17 855 4529 692611053 692607386 0.000000e+00 5938.0
7 TraesCS7D01G500900 chr7B 95.840 1250 31 11 5083 6320 692606803 692605563 0.000000e+00 2001.0
8 TraesCS7D01G500900 chr7B 92.059 340 26 1 5083 5422 65329638 65329976 1.680000e-130 477.0
9 TraesCS7D01G500900 chr7B 78.859 596 90 27 5083 5652 676139919 676140504 2.930000e-98 370.0
10 TraesCS7D01G500900 chr7B 94.093 237 11 2 259 494 692611485 692611251 2.280000e-94 357.0
11 TraesCS7D01G500900 chr7B 82.791 215 24 11 3 206 692611702 692611490 5.310000e-41 180.0
12 TraesCS7D01G500900 chr7B 92.553 94 7 0 6348 6441 692605565 692605472 1.160000e-27 135.0
13 TraesCS7D01G500900 chr7A 95.233 3692 128 25 853 4524 699301649 699297986 0.000000e+00 5799.0
14 TraesCS7D01G500900 chr7A 94.180 1409 46 20 5083 6470 699297361 699295968 0.000000e+00 2115.0
15 TraesCS7D01G500900 chr7A 88.580 324 19 6 254 575 699302071 699301764 1.750000e-100 377.0
16 TraesCS7D01G500900 chr7A 81.387 274 31 10 1290 1563 46266299 46266046 8.750000e-49 206.0
17 TraesCS7D01G500900 chr7A 82.960 223 21 7 1 206 699302411 699302189 1.140000e-42 185.0
18 TraesCS7D01G500900 chr1B 91.033 513 43 2 3758 4269 35653113 35652603 0.000000e+00 689.0
19 TraesCS7D01G500900 chr1B 89.274 317 33 1 5085 5401 35652510 35652195 4.840000e-106 396.0
20 TraesCS7D01G500900 chr1B 89.412 85 8 1 4806 4889 22328136 22328220 9.130000e-19 106.0
21 TraesCS7D01G500900 chr1B 97.436 39 0 1 1250 1288 650488866 650488829 1.550000e-06 65.8
22 TraesCS7D01G500900 chr1B 100.000 34 0 0 1255 1288 526244194 526244161 5.570000e-06 63.9
23 TraesCS7D01G500900 chr3B 90.323 341 30 3 5083 5422 70847967 70848305 1.700000e-120 444.0
24 TraesCS7D01G500900 chr3B 84.821 112 15 2 1190 1301 741677789 741677898 1.960000e-20 111.0
25 TraesCS7D01G500900 chr3B 87.356 87 10 1 4805 4890 692221735 692221821 1.530000e-16 99.0
26 TraesCS7D01G500900 chrUn 78.738 602 92 27 5083 5658 459007268 459006677 2.930000e-98 370.0
27 TraesCS7D01G500900 chrUn 83.838 99 10 5 4794 4891 134242281 134242374 9.200000e-14 89.8
28 TraesCS7D01G500900 chr5B 88.889 153 15 2 1772 1923 418458421 418458270 3.170000e-43 187.0
29 TraesCS7D01G500900 chr5B 84.821 112 14 1 3806 3917 443274504 443274612 7.060000e-20 110.0
30 TraesCS7D01G500900 chr6A 90.000 100 2 4 3703 3796 528933168 528933265 9.070000e-24 122.0
31 TraesCS7D01G500900 chr5D 84.821 112 14 1 3806 3917 373209292 373209400 7.060000e-20 110.0
32 TraesCS7D01G500900 chr1D 90.361 83 8 0 4803 4885 30096993 30097075 7.060000e-20 110.0
33 TraesCS7D01G500900 chr2D 87.912 91 9 2 4802 4891 475078927 475079016 9.130000e-19 106.0
34 TraesCS7D01G500900 chr1A 89.157 83 9 0 4803 4885 30185227 30185309 3.280000e-18 104.0
35 TraesCS7D01G500900 chr4B 88.372 86 9 1 4805 4889 41531416 41531501 1.180000e-17 102.0
36 TraesCS7D01G500900 chr2B 87.778 90 8 3 4806 4894 566624975 566625062 1.180000e-17 102.0
37 TraesCS7D01G500900 chr6B 85.714 91 12 1 4809 4898 161351309 161351219 1.980000e-15 95.3
38 TraesCS7D01G500900 chr6D 80.208 96 15 3 1332 1427 273042476 273042567 1.200000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G500900 chr7D 607036643 607043301 6658 False 3099.5 10724 97.22200 1 6659 4 chr7D.!!$F1 6658
1 TraesCS7D01G500900 chr7D 598025848 598026564 716 True 295.5 374 83.40300 3712 4508 2 chr7D.!!$R1 796
2 TraesCS7D01G500900 chr7B 692605472 692611702 6230 True 1722.2 5938 92.23480 3 6441 5 chr7B.!!$R1 6438
3 TraesCS7D01G500900 chr7B 676139919 676140504 585 False 370.0 370 78.85900 5083 5652 1 chr7B.!!$F2 569
4 TraesCS7D01G500900 chr7A 699295968 699302411 6443 True 2119.0 5799 90.23825 1 6470 4 chr7A.!!$R2 6469
5 TraesCS7D01G500900 chr1B 35652195 35653113 918 True 542.5 689 90.15350 3758 5401 2 chr1B.!!$R3 1643
6 TraesCS7D01G500900 chrUn 459006677 459007268 591 True 370.0 370 78.73800 5083 5658 1 chrUn.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 243 0.035056 CACCCAATTCGCCTCCTCTT 60.035 55.000 0.00 0.00 0.00 2.85 F
549 693 0.107214 TACCATACCAAGCAGCAGCC 60.107 55.000 0.00 0.00 43.56 4.85 F
1905 2077 1.068333 CCAGAAAATGCGACCTGGTTG 60.068 52.381 9.87 9.87 40.84 3.77 F
2424 2608 1.745653 GTGAGGCAAACTAATCCCAGC 59.254 52.381 0.00 0.00 0.00 4.85 F
3056 3240 0.389166 GTCGAGCAACTCCAGGAGTG 60.389 60.000 23.67 17.00 42.59 3.51 F
3069 3253 1.002990 GGAGTGTGGTTTACCGGGG 60.003 63.158 6.32 0.00 39.43 5.73 F
4529 4716 0.242825 CTGGCTTGTTGCACCTCATG 59.757 55.000 0.00 0.00 45.15 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1768 0.395311 CGTAGGAGCAGGTGGAGGTA 60.395 60.000 0.00 0.00 0.00 3.08 R
1944 2116 0.461548 TCATGACTGGATCGGAGTGC 59.538 55.000 0.00 0.00 0.00 4.40 R
3056 3240 1.520600 CTGTTGCCCCGGTAAACCAC 61.521 60.000 0.00 0.00 35.14 4.16 R
4065 4252 2.147958 TCTGTAACCGTTGCAATGGAC 58.852 47.619 38.28 27.67 38.48 4.02 R
4509 4696 0.178981 ATGAGGTGCAACAAGCCAGT 60.179 50.000 3.64 0.00 44.83 4.00 R
4676 4997 0.460987 GTCTCCACGGAAGATGCCTG 60.461 60.000 0.00 0.00 0.00 4.85 R
5790 6243 0.578211 GACGGACGCAACGAAAGAAA 59.422 50.000 0.00 0.00 34.93 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.351706 TCAACACCAACCAACTACCC 57.648 50.000 0.00 0.00 0.00 3.69
44 45 2.158726 TCAACACCAACCAACTACCCTC 60.159 50.000 0.00 0.00 0.00 4.30
46 47 1.420138 ACACCAACCAACTACCCTCTG 59.580 52.381 0.00 0.00 0.00 3.35
47 48 1.420138 CACCAACCAACTACCCTCTGT 59.580 52.381 0.00 0.00 0.00 3.41
49 50 1.978580 CCAACCAACTACCCTCTGTCT 59.021 52.381 0.00 0.00 0.00 3.41
50 51 2.289694 CCAACCAACTACCCTCTGTCTG 60.290 54.545 0.00 0.00 0.00 3.51
51 52 0.977395 ACCAACTACCCTCTGTCTGC 59.023 55.000 0.00 0.00 0.00 4.26
52 53 0.976641 CCAACTACCCTCTGTCTGCA 59.023 55.000 0.00 0.00 0.00 4.41
82 92 4.706476 TCATCATTGGATTCCTTCAACACC 59.294 41.667 3.95 0.00 0.00 4.16
118 134 7.301068 TCCACATCAACAAAACAATTTTCAC 57.699 32.000 0.00 0.00 0.00 3.18
172 191 4.776322 TGGATCAAGCGGTGGCGG 62.776 66.667 0.00 0.00 46.35 6.13
193 216 1.553690 CCAGGTGAACATCCGACCCT 61.554 60.000 0.00 0.00 0.00 4.34
194 217 0.324943 CAGGTGAACATCCGACCCTT 59.675 55.000 0.00 0.00 0.00 3.95
195 218 0.613777 AGGTGAACATCCGACCCTTC 59.386 55.000 0.00 0.00 0.00 3.46
196 219 0.613777 GGTGAACATCCGACCCTTCT 59.386 55.000 0.00 0.00 0.00 2.85
197 220 1.829222 GGTGAACATCCGACCCTTCTA 59.171 52.381 0.00 0.00 0.00 2.10
198 221 2.159085 GGTGAACATCCGACCCTTCTAG 60.159 54.545 0.00 0.00 0.00 2.43
199 222 2.758979 GTGAACATCCGACCCTTCTAGA 59.241 50.000 0.00 0.00 0.00 2.43
200 223 3.194968 GTGAACATCCGACCCTTCTAGAA 59.805 47.826 4.81 4.81 0.00 2.10
201 224 3.194968 TGAACATCCGACCCTTCTAGAAC 59.805 47.826 0.00 0.00 0.00 3.01
202 225 2.816411 ACATCCGACCCTTCTAGAACA 58.184 47.619 0.00 0.00 0.00 3.18
203 226 2.496470 ACATCCGACCCTTCTAGAACAC 59.504 50.000 0.00 0.00 0.00 3.32
204 227 1.553706 TCCGACCCTTCTAGAACACC 58.446 55.000 0.00 0.00 0.00 4.16
205 228 0.535797 CCGACCCTTCTAGAACACCC 59.464 60.000 0.00 0.00 0.00 4.61
206 229 1.263356 CGACCCTTCTAGAACACCCA 58.737 55.000 0.00 0.00 0.00 4.51
207 230 1.621814 CGACCCTTCTAGAACACCCAA 59.378 52.381 0.00 0.00 0.00 4.12
208 231 2.236395 CGACCCTTCTAGAACACCCAAT 59.764 50.000 0.00 0.00 0.00 3.16
209 232 3.307480 CGACCCTTCTAGAACACCCAATT 60.307 47.826 0.00 0.00 0.00 2.32
210 233 4.262617 GACCCTTCTAGAACACCCAATTC 58.737 47.826 0.00 0.00 0.00 2.17
211 234 3.270877 CCCTTCTAGAACACCCAATTCG 58.729 50.000 0.00 0.00 0.00 3.34
212 235 2.678336 CCTTCTAGAACACCCAATTCGC 59.322 50.000 0.00 0.00 0.00 4.70
213 236 2.396590 TCTAGAACACCCAATTCGCC 57.603 50.000 0.00 0.00 0.00 5.54
214 237 1.906574 TCTAGAACACCCAATTCGCCT 59.093 47.619 0.00 0.00 0.00 5.52
215 238 2.093658 TCTAGAACACCCAATTCGCCTC 60.094 50.000 0.00 0.00 0.00 4.70
216 239 0.322546 AGAACACCCAATTCGCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
217 240 0.322546 GAACACCCAATTCGCCTCCT 60.323 55.000 0.00 0.00 0.00 3.69
218 241 0.322546 AACACCCAATTCGCCTCCTC 60.323 55.000 0.00 0.00 0.00 3.71
219 242 1.201429 ACACCCAATTCGCCTCCTCT 61.201 55.000 0.00 0.00 0.00 3.69
220 243 0.035056 CACCCAATTCGCCTCCTCTT 60.035 55.000 0.00 0.00 0.00 2.85
221 244 0.698818 ACCCAATTCGCCTCCTCTTT 59.301 50.000 0.00 0.00 0.00 2.52
222 245 1.075536 ACCCAATTCGCCTCCTCTTTT 59.924 47.619 0.00 0.00 0.00 2.27
223 246 2.171003 CCCAATTCGCCTCCTCTTTTT 58.829 47.619 0.00 0.00 0.00 1.94
272 295 7.952671 AGAAATCCTCTTTTTCTAACAAACCC 58.047 34.615 0.00 0.00 40.66 4.11
321 344 0.693049 AACACGAATGGCCTCTTCCT 59.307 50.000 3.32 0.00 0.00 3.36
372 503 0.318120 AAGGTTTTGCCAATGCTCCG 59.682 50.000 0.00 0.00 40.61 4.63
408 539 4.301662 AAAGGGGAGGCAGGGGGA 62.302 66.667 0.00 0.00 0.00 4.81
412 543 3.093172 GGGAGGCAGGGGGAAGAG 61.093 72.222 0.00 0.00 0.00 2.85
530 674 2.203538 CCAACACCAAGCCAGCCT 60.204 61.111 0.00 0.00 0.00 4.58
532 676 1.244019 CCAACACCAAGCCAGCCTAC 61.244 60.000 0.00 0.00 0.00 3.18
533 677 1.074951 AACACCAAGCCAGCCTACC 59.925 57.895 0.00 0.00 0.00 3.18
534 678 1.715019 AACACCAAGCCAGCCTACCA 61.715 55.000 0.00 0.00 0.00 3.25
535 679 1.304282 CACCAAGCCAGCCTACCAT 59.696 57.895 0.00 0.00 0.00 3.55
536 680 0.546122 CACCAAGCCAGCCTACCATA 59.454 55.000 0.00 0.00 0.00 2.74
538 682 0.179018 CCAAGCCAGCCTACCATACC 60.179 60.000 0.00 0.00 0.00 2.73
539 683 0.546122 CAAGCCAGCCTACCATACCA 59.454 55.000 0.00 0.00 0.00 3.25
540 684 1.064758 CAAGCCAGCCTACCATACCAA 60.065 52.381 0.00 0.00 0.00 3.67
541 685 0.839946 AGCCAGCCTACCATACCAAG 59.160 55.000 0.00 0.00 0.00 3.61
542 686 0.819666 GCCAGCCTACCATACCAAGC 60.820 60.000 0.00 0.00 0.00 4.01
543 687 0.546122 CCAGCCTACCATACCAAGCA 59.454 55.000 0.00 0.00 0.00 3.91
545 689 0.181350 AGCCTACCATACCAAGCAGC 59.819 55.000 0.00 0.00 0.00 5.25
548 692 1.303309 CTACCATACCAAGCAGCAGC 58.697 55.000 0.00 0.00 42.56 5.25
549 693 0.107214 TACCATACCAAGCAGCAGCC 60.107 55.000 0.00 0.00 43.56 4.85
894 1046 2.597510 GGTTCCTGGTGGTGTGGC 60.598 66.667 0.00 0.00 34.23 5.01
900 1052 3.765894 CTGGTGGTGTGGCGGTGAA 62.766 63.158 0.00 0.00 0.00 3.18
912 1064 1.802337 GCGGTGAAGGGGTTTGGTTC 61.802 60.000 0.00 0.00 0.00 3.62
914 1066 1.658114 GTGAAGGGGTTTGGTTCGC 59.342 57.895 0.00 0.00 0.00 4.70
1503 1657 2.523168 TCGTCCACCCAGTGCTCA 60.523 61.111 0.00 0.00 31.34 4.26
1506 1660 1.892819 CGTCCACCCAGTGCTCAGAT 61.893 60.000 0.00 0.00 31.34 2.90
1602 1768 2.681778 CCGACTGCTGTCTCCCCT 60.682 66.667 19.86 0.00 40.86 4.79
1905 2077 1.068333 CCAGAAAATGCGACCTGGTTG 60.068 52.381 9.87 9.87 40.84 3.77
2277 2461 2.812011 GCCGGCGACTTATGGATTTAAT 59.188 45.455 12.58 0.00 0.00 1.40
2278 2462 3.998341 GCCGGCGACTTATGGATTTAATA 59.002 43.478 12.58 0.00 0.00 0.98
2279 2463 4.453136 GCCGGCGACTTATGGATTTAATAA 59.547 41.667 12.58 0.00 0.00 1.40
2423 2607 3.356529 AGTGAGGCAAACTAATCCCAG 57.643 47.619 0.00 0.00 0.00 4.45
2424 2608 1.745653 GTGAGGCAAACTAATCCCAGC 59.254 52.381 0.00 0.00 0.00 4.85
2598 2782 2.444140 AACGAGCCCCGCTATCCT 60.444 61.111 0.00 0.00 39.88 3.24
2667 2851 4.039124 TCACAATACTCTCAGAGCAACACA 59.961 41.667 0.00 0.00 32.04 3.72
2721 2905 4.524802 AGCCCATCCAACTGAATCAATA 57.475 40.909 0.00 0.00 0.00 1.90
2930 3114 2.899339 GGGCGAGCAGAAGGATGC 60.899 66.667 0.00 0.00 46.88 3.91
3056 3240 0.389166 GTCGAGCAACTCCAGGAGTG 60.389 60.000 23.67 17.00 42.59 3.51
3069 3253 1.002990 GGAGTGTGGTTTACCGGGG 60.003 63.158 6.32 0.00 39.43 5.73
3333 3517 9.665719 TGCTTTATGAGTCATAAGTTGTGAATA 57.334 29.630 21.65 6.77 37.57 1.75
3549 3735 9.554395 TGTTCTGTTTTATGTCATCTTCAGTAA 57.446 29.630 0.00 0.00 0.00 2.24
4200 4387 2.564504 GCCTCAGGCCTTTTCTCAAAAT 59.435 45.455 3.37 0.00 44.06 1.82
4488 4675 5.449588 CCAATATGCAAGGTAAGAACTGCAG 60.450 44.000 13.48 13.48 35.70 4.41
4508 4695 9.155975 ACTGCAGTTCTTCTGTTTTATACTATG 57.844 33.333 15.25 0.00 45.23 2.23
4509 4696 9.371136 CTGCAGTTCTTCTGTTTTATACTATGA 57.629 33.333 5.25 0.00 45.23 2.15
4524 4711 1.470098 CTATGACTGGCTTGTTGCACC 59.530 52.381 0.00 0.00 45.15 5.01
4529 4716 0.242825 CTGGCTTGTTGCACCTCATG 59.757 55.000 0.00 0.00 45.15 3.07
4530 4717 0.467844 TGGCTTGTTGCACCTCATGT 60.468 50.000 0.00 0.00 45.15 3.21
4531 4718 0.675633 GGCTTGTTGCACCTCATGTT 59.324 50.000 0.00 0.00 45.15 2.71
4532 4719 1.603678 GGCTTGTTGCACCTCATGTTG 60.604 52.381 0.00 0.00 45.15 3.33
4533 4720 1.603678 GCTTGTTGCACCTCATGTTGG 60.604 52.381 6.07 6.07 42.31 3.77
4534 4721 1.955778 CTTGTTGCACCTCATGTTGGA 59.044 47.619 12.98 0.00 0.00 3.53
4536 4723 2.382882 TGTTGCACCTCATGTTGGAAA 58.617 42.857 12.98 3.84 0.00 3.13
4540 4727 5.948758 TGTTGCACCTCATGTTGGAAATATA 59.051 36.000 12.98 0.00 0.00 0.86
4541 4728 6.127758 TGTTGCACCTCATGTTGGAAATATAC 60.128 38.462 12.98 5.49 0.00 1.47
4543 4730 5.356751 TGCACCTCATGTTGGAAATATACAC 59.643 40.000 12.98 0.00 0.00 2.90
4545 4732 6.458751 GCACCTCATGTTGGAAATATACACTG 60.459 42.308 12.98 0.78 0.00 3.66
4546 4733 5.590259 ACCTCATGTTGGAAATATACACTGC 59.410 40.000 12.98 0.00 0.00 4.40
4580 4893 9.911788 GATAATAATATGGACATTCATGAGGGT 57.088 33.333 0.00 0.00 0.00 4.34
4583 4896 5.651612 ATATGGACATTCATGAGGGTGAA 57.348 39.130 6.11 0.00 41.88 3.18
4590 4903 6.322201 GGACATTCATGAGGGTGAAAATGTAT 59.678 38.462 6.11 0.00 41.09 2.29
4599 4912 6.491745 TGAGGGTGAAAATGTATTGTTGCTTA 59.508 34.615 0.00 0.00 0.00 3.09
4615 4928 3.954200 TGCTTAGGCAATTGATGAGTCA 58.046 40.909 10.34 0.00 46.36 3.41
4634 4947 7.276658 TGAGTCACACCTTAAAATAGACACAA 58.723 34.615 0.00 0.00 0.00 3.33
4635 4948 7.936847 TGAGTCACACCTTAAAATAGACACAAT 59.063 33.333 0.00 0.00 0.00 2.71
4653 4966 9.715121 AGACACAATATTGATTTGAATTTTGCT 57.285 25.926 22.16 4.94 31.26 3.91
4664 4977 4.475051 TGAATTTTGCTGGGGATCATTG 57.525 40.909 0.00 0.00 0.00 2.82
4676 4997 5.437060 TGGGGATCATTGTAGCTAAACTTC 58.563 41.667 0.00 0.00 0.00 3.01
4690 5011 1.813513 AACTTCAGGCATCTTCCGTG 58.186 50.000 0.00 0.00 0.00 4.94
4693 5014 0.250234 TTCAGGCATCTTCCGTGGAG 59.750 55.000 0.00 0.00 0.00 3.86
4709 5032 1.003580 TGGAGACTGGAAGGAACATGC 59.996 52.381 0.00 0.00 39.30 4.06
4710 5033 1.003580 GGAGACTGGAAGGAACATGCA 59.996 52.381 0.00 0.00 39.30 3.96
4722 5045 7.395772 TGGAAGGAACATGCAGTTTAATAATGA 59.604 33.333 0.00 0.00 41.51 2.57
4723 5046 7.702348 GGAAGGAACATGCAGTTTAATAATGAC 59.298 37.037 0.00 0.00 41.51 3.06
4724 5047 7.701539 AGGAACATGCAGTTTAATAATGACA 57.298 32.000 0.00 0.00 41.51 3.58
4725 5048 8.297470 AGGAACATGCAGTTTAATAATGACAT 57.703 30.769 0.00 0.00 41.51 3.06
4726 5049 9.407380 AGGAACATGCAGTTTAATAATGACATA 57.593 29.630 0.00 0.00 41.51 2.29
4792 5115 7.326877 CATCAACTATGTAACGATGAGCTAC 57.673 40.000 0.00 0.00 36.42 3.58
4793 5116 6.694877 TCAACTATGTAACGATGAGCTACT 57.305 37.500 0.00 0.00 0.00 2.57
4794 5117 7.096884 TCAACTATGTAACGATGAGCTACTT 57.903 36.000 0.00 0.00 0.00 2.24
4795 5118 8.217131 TCAACTATGTAACGATGAGCTACTTA 57.783 34.615 0.00 0.00 0.00 2.24
4796 5119 8.847196 TCAACTATGTAACGATGAGCTACTTAT 58.153 33.333 0.00 0.00 0.00 1.73
4797 5120 8.906693 CAACTATGTAACGATGAGCTACTTATG 58.093 37.037 0.00 0.00 0.00 1.90
4798 5121 8.167605 ACTATGTAACGATGAGCTACTTATGT 57.832 34.615 0.00 0.00 0.00 2.29
4799 5122 9.281371 ACTATGTAACGATGAGCTACTTATGTA 57.719 33.333 0.00 0.00 0.00 2.29
4800 5123 9.544314 CTATGTAACGATGAGCTACTTATGTAC 57.456 37.037 0.00 0.00 0.00 2.90
4801 5124 7.563888 TGTAACGATGAGCTACTTATGTACT 57.436 36.000 0.00 0.00 0.00 2.73
4802 5125 8.667076 TGTAACGATGAGCTACTTATGTACTA 57.333 34.615 0.00 0.00 0.00 1.82
4803 5126 9.112725 TGTAACGATGAGCTACTTATGTACTAA 57.887 33.333 0.00 0.00 0.00 2.24
4804 5127 9.941664 GTAACGATGAGCTACTTATGTACTAAA 57.058 33.333 0.00 0.00 0.00 1.85
4835 5158 9.847224 ACCTCCATATCAAAATATAAGACGTTT 57.153 29.630 0.00 0.00 0.00 3.60
4852 5175 7.634809 AGACGTTTTTGTAGACTAAACTAGC 57.365 36.000 0.00 0.00 31.33 3.42
4853 5176 6.644181 AGACGTTTTTGTAGACTAAACTAGCC 59.356 38.462 0.00 0.00 31.33 3.93
4854 5177 6.519382 ACGTTTTTGTAGACTAAACTAGCCT 58.481 36.000 0.00 0.00 31.33 4.58
4855 5178 6.988580 ACGTTTTTGTAGACTAAACTAGCCTT 59.011 34.615 0.00 0.00 31.33 4.35
4856 5179 8.143835 ACGTTTTTGTAGACTAAACTAGCCTTA 58.856 33.333 0.00 0.00 31.33 2.69
4857 5180 8.981647 CGTTTTTGTAGACTAAACTAGCCTTAA 58.018 33.333 0.00 0.00 31.33 1.85
4884 5207 8.446599 AAACATCTTATATTTTGGTACGGAGG 57.553 34.615 0.00 0.00 0.00 4.30
4885 5208 7.369551 ACATCTTATATTTTGGTACGGAGGA 57.630 36.000 0.00 0.00 0.00 3.71
4886 5209 7.442656 ACATCTTATATTTTGGTACGGAGGAG 58.557 38.462 0.00 0.00 0.00 3.69
4887 5210 7.070821 ACATCTTATATTTTGGTACGGAGGAGT 59.929 37.037 0.00 0.00 0.00 3.85
4888 5211 8.582437 CATCTTATATTTTGGTACGGAGGAGTA 58.418 37.037 0.00 0.00 0.00 2.59
4889 5212 8.716674 TCTTATATTTTGGTACGGAGGAGTAT 57.283 34.615 0.00 0.00 0.00 2.12
4890 5213 9.151177 TCTTATATTTTGGTACGGAGGAGTATT 57.849 33.333 0.00 0.00 0.00 1.89
4891 5214 9.774413 CTTATATTTTGGTACGGAGGAGTATTT 57.226 33.333 0.00 0.00 0.00 1.40
4935 5258 6.506500 AGAATTACTTGTTTGCCATCTGAG 57.493 37.500 0.00 0.00 0.00 3.35
4949 5273 5.302568 TGCCATCTGAGTTTTGTCATCTTTT 59.697 36.000 0.00 0.00 0.00 2.27
4950 5274 6.489700 TGCCATCTGAGTTTTGTCATCTTTTA 59.510 34.615 0.00 0.00 0.00 1.52
4951 5275 6.803807 GCCATCTGAGTTTTGTCATCTTTTAC 59.196 38.462 0.00 0.00 0.00 2.01
4952 5276 7.308830 GCCATCTGAGTTTTGTCATCTTTTACT 60.309 37.037 0.00 0.00 0.00 2.24
4953 5277 8.233190 CCATCTGAGTTTTGTCATCTTTTACTC 58.767 37.037 0.00 0.00 0.00 2.59
4974 5298 7.667575 ACTCTATCTACTGAAACATCCATGT 57.332 36.000 0.00 0.00 44.20 3.21
4982 5311 4.216902 ACTGAAACATCCATGTCACATGTG 59.783 41.667 20.18 20.18 40.80 3.21
4987 5316 2.477845 TCCATGTCACATGTGGTCTG 57.522 50.000 25.16 17.81 34.61 3.51
4991 5320 3.264947 CATGTCACATGTGGTCTGTAGG 58.735 50.000 25.16 4.45 0.00 3.18
4995 5324 4.530553 TGTCACATGTGGTCTGTAGGTAAT 59.469 41.667 25.16 0.00 0.00 1.89
5015 5344 9.363401 AGGTAATTAAGGCTTCACTTTTAGTTT 57.637 29.630 1.30 0.00 32.02 2.66
5021 5350 5.917462 AGGCTTCACTTTTAGTTTTTGCAT 58.083 33.333 0.00 0.00 0.00 3.96
5029 5358 7.062839 TCACTTTTAGTTTTTGCATTGTCACAC 59.937 33.333 0.00 0.00 0.00 3.82
5030 5359 5.940603 TTTAGTTTTTGCATTGTCACACG 57.059 34.783 0.00 0.00 0.00 4.49
5031 5360 2.192624 AGTTTTTGCATTGTCACACGC 58.807 42.857 0.00 0.00 0.00 5.34
5032 5361 1.923204 GTTTTTGCATTGTCACACGCA 59.077 42.857 0.00 0.00 0.00 5.24
5033 5362 2.284263 TTTTGCATTGTCACACGCAA 57.716 40.000 9.32 9.32 42.29 4.85
5035 5364 2.284263 TTGCATTGTCACACGCAAAA 57.716 40.000 10.71 0.00 41.14 2.44
5036 5365 2.505628 TGCATTGTCACACGCAAAAT 57.494 40.000 0.00 0.00 0.00 1.82
5076 5405 4.123506 TCATGCGAACTGTCAACAAACTA 58.876 39.130 0.00 0.00 0.00 2.24
5077 5406 4.572795 TCATGCGAACTGTCAACAAACTAA 59.427 37.500 0.00 0.00 0.00 2.24
5078 5407 5.238432 TCATGCGAACTGTCAACAAACTAAT 59.762 36.000 0.00 0.00 0.00 1.73
5079 5408 4.843147 TGCGAACTGTCAACAAACTAATG 58.157 39.130 0.00 0.00 0.00 1.90
5080 5409 4.334203 TGCGAACTGTCAACAAACTAATGT 59.666 37.500 0.00 0.00 34.24 2.71
5081 5410 5.163703 TGCGAACTGTCAACAAACTAATGTT 60.164 36.000 0.00 0.00 44.08 2.71
5121 5540 5.128499 TGATCTTGGGCTTTCAAAAGTCAAA 59.872 36.000 9.14 3.41 42.28 2.69
5250 5669 3.270027 TCATATTGCTTCCGTGTCCAAG 58.730 45.455 0.00 0.00 0.00 3.61
5455 5901 2.183478 TACTTGTGCAGTGGATGGTG 57.817 50.000 0.00 0.00 35.97 4.17
5476 5923 5.105716 GGTGAGAGTCTGATGTAAGCTGTTA 60.106 44.000 0.00 0.00 0.00 2.41
5680 6128 1.597854 CGCCAGCAGTGGTCTTGAA 60.598 57.895 0.00 0.00 46.96 2.69
5802 6255 3.550275 GGTTGGTTTCTTTCTTTCGTTGC 59.450 43.478 0.00 0.00 0.00 4.17
5803 6256 3.059634 TGGTTTCTTTCTTTCGTTGCG 57.940 42.857 0.00 0.00 0.00 4.85
5804 6257 2.420722 TGGTTTCTTTCTTTCGTTGCGT 59.579 40.909 0.00 0.00 0.00 5.24
5805 6258 3.033873 GGTTTCTTTCTTTCGTTGCGTC 58.966 45.455 0.00 0.00 0.00 5.19
6161 6629 4.431416 TGAACTGGTTGTGTAATCTGGT 57.569 40.909 0.00 0.00 0.00 4.00
6162 6630 4.385825 TGAACTGGTTGTGTAATCTGGTC 58.614 43.478 0.00 0.00 34.29 4.02
6309 6779 9.959749 GTTGTTTTGTTTTATTATCCTGTGAGA 57.040 29.630 0.00 0.00 0.00 3.27
6344 6815 6.817765 TCCAGTCATTTGATTTACCTTGTC 57.182 37.500 0.00 0.00 0.00 3.18
6386 6857 0.605860 CTGCCTGAAAGAGCTGCAGT 60.606 55.000 16.64 1.59 43.32 4.40
6397 6868 4.336889 AGAGCTGCAGTTGTTGTACTTA 57.663 40.909 16.64 0.00 0.00 2.24
6409 6880 3.393278 TGTTGTACTTAGGGCTCCTTTGT 59.607 43.478 0.00 2.56 34.61 2.83
6470 6941 5.246203 GGAATTTTTCTTAGGGCTCCTTTGT 59.754 40.000 0.00 0.00 34.61 2.83
6471 6942 6.239600 GGAATTTTTCTTAGGGCTCCTTTGTT 60.240 38.462 0.00 0.00 34.61 2.83
6472 6943 6.747414 ATTTTTCTTAGGGCTCCTTTGTTT 57.253 33.333 0.00 0.00 34.61 2.83
6473 6944 6.553953 TTTTTCTTAGGGCTCCTTTGTTTT 57.446 33.333 0.00 0.00 34.61 2.43
6474 6945 5.529581 TTTCTTAGGGCTCCTTTGTTTTG 57.470 39.130 0.00 0.00 34.61 2.44
6475 6946 4.447138 TCTTAGGGCTCCTTTGTTTTGA 57.553 40.909 0.00 0.00 34.61 2.69
6476 6947 4.798882 TCTTAGGGCTCCTTTGTTTTGAA 58.201 39.130 0.00 0.00 34.61 2.69
6477 6948 4.827284 TCTTAGGGCTCCTTTGTTTTGAAG 59.173 41.667 0.00 0.00 34.61 3.02
6478 6949 3.312736 AGGGCTCCTTTGTTTTGAAGA 57.687 42.857 0.00 0.00 0.00 2.87
6479 6950 3.642141 AGGGCTCCTTTGTTTTGAAGAA 58.358 40.909 0.00 0.00 0.00 2.52
6480 6951 4.030216 AGGGCTCCTTTGTTTTGAAGAAA 58.970 39.130 0.00 0.00 0.00 2.52
6481 6952 4.655649 AGGGCTCCTTTGTTTTGAAGAAAT 59.344 37.500 0.00 0.00 0.00 2.17
6482 6953 4.991056 GGGCTCCTTTGTTTTGAAGAAATC 59.009 41.667 0.00 0.00 0.00 2.17
6483 6954 4.991056 GGCTCCTTTGTTTTGAAGAAATCC 59.009 41.667 0.00 0.00 0.00 3.01
6484 6955 5.221521 GGCTCCTTTGTTTTGAAGAAATCCT 60.222 40.000 0.00 0.00 0.00 3.24
6485 6956 6.015434 GGCTCCTTTGTTTTGAAGAAATCCTA 60.015 38.462 0.00 0.00 0.00 2.94
6486 6957 7.310052 GGCTCCTTTGTTTTGAAGAAATCCTAT 60.310 37.037 0.00 0.00 0.00 2.57
6487 6958 8.739972 GCTCCTTTGTTTTGAAGAAATCCTATA 58.260 33.333 0.00 0.00 0.00 1.31
6489 6960 9.243105 TCCTTTGTTTTGAAGAAATCCTATAGG 57.757 33.333 13.07 13.07 0.00 2.57
6523 6994 8.318412 TCTTAATTTGGGAATTTTTCTTAGGGC 58.682 33.333 0.00 0.00 36.82 5.19
6524 6995 6.702449 AATTTGGGAATTTTTCTTAGGGCT 57.298 33.333 0.00 0.00 31.48 5.19
6525 6996 5.738619 TTTGGGAATTTTTCTTAGGGCTC 57.261 39.130 0.00 0.00 0.00 4.70
6526 6997 3.708451 TGGGAATTTTTCTTAGGGCTCC 58.292 45.455 0.00 0.00 0.00 4.70
6527 6998 3.336694 TGGGAATTTTTCTTAGGGCTCCT 59.663 43.478 0.00 0.00 37.71 3.69
6528 6999 4.202781 TGGGAATTTTTCTTAGGGCTCCTT 60.203 41.667 0.00 0.00 34.61 3.36
6529 7000 4.777896 GGGAATTTTTCTTAGGGCTCCTTT 59.222 41.667 0.00 0.00 34.61 3.11
6530 7001 5.337571 GGGAATTTTTCTTAGGGCTCCTTTG 60.338 44.000 0.00 0.00 34.61 2.77
6531 7002 5.246203 GGAATTTTTCTTAGGGCTCCTTTGT 59.754 40.000 0.00 0.00 34.61 2.83
6532 7003 6.239600 GGAATTTTTCTTAGGGCTCCTTTGTT 60.240 38.462 0.00 0.00 34.61 2.83
6533 7004 6.747414 ATTTTTCTTAGGGCTCCTTTGTTT 57.253 33.333 0.00 0.00 34.61 2.83
6534 7005 5.784578 TTTTCTTAGGGCTCCTTTGTTTC 57.215 39.130 0.00 0.00 34.61 2.78
6535 7006 4.447138 TTCTTAGGGCTCCTTTGTTTCA 57.553 40.909 0.00 0.00 34.61 2.69
6536 7007 4.447138 TCTTAGGGCTCCTTTGTTTCAA 57.553 40.909 0.00 0.00 34.61 2.69
6537 7008 4.798882 TCTTAGGGCTCCTTTGTTTCAAA 58.201 39.130 0.00 0.00 34.61 2.69
6538 7009 4.827284 TCTTAGGGCTCCTTTGTTTCAAAG 59.173 41.667 13.28 13.28 34.61 2.77
6539 7010 3.312736 AGGGCTCCTTTGTTTCAAAGA 57.687 42.857 19.55 8.28 0.00 2.52
6540 7011 3.642141 AGGGCTCCTTTGTTTCAAAGAA 58.358 40.909 19.55 2.92 0.00 2.52
6541 7012 4.030216 AGGGCTCCTTTGTTTCAAAGAAA 58.970 39.130 19.55 3.54 0.00 2.52
6542 7013 4.655649 AGGGCTCCTTTGTTTCAAAGAAAT 59.344 37.500 19.55 1.99 0.00 2.17
6543 7014 5.838521 AGGGCTCCTTTGTTTCAAAGAAATA 59.161 36.000 19.55 5.55 0.00 1.40
6544 7015 5.926542 GGGCTCCTTTGTTTCAAAGAAATAC 59.073 40.000 19.55 8.61 0.00 1.89
6545 7016 6.239317 GGGCTCCTTTGTTTCAAAGAAATACT 60.239 38.462 19.55 0.00 0.00 2.12
6546 7017 7.039993 GGGCTCCTTTGTTTCAAAGAAATACTA 60.040 37.037 19.55 1.13 0.00 1.82
6547 7018 8.523658 GGCTCCTTTGTTTCAAAGAAATACTAT 58.476 33.333 19.55 0.00 0.00 2.12
6569 7040 9.774413 ACTATAGGATATTTTTCTTACGTTGGG 57.226 33.333 4.43 0.00 0.00 4.12
6570 7041 9.991906 CTATAGGATATTTTTCTTACGTTGGGA 57.008 33.333 0.00 0.00 0.00 4.37
6572 7043 9.862149 ATAGGATATTTTTCTTACGTTGGGAAT 57.138 29.630 0.00 0.00 0.00 3.01
6573 7044 8.589701 AGGATATTTTTCTTACGTTGGGAATT 57.410 30.769 0.00 0.00 0.00 2.17
6574 7045 8.683615 AGGATATTTTTCTTACGTTGGGAATTC 58.316 33.333 0.00 0.00 0.00 2.17
6575 7046 8.683615 GGATATTTTTCTTACGTTGGGAATTCT 58.316 33.333 5.23 0.00 0.00 2.40
6578 7049 7.576861 TTTTTCTTACGTTGGGAATTCTTCT 57.423 32.000 5.23 0.00 0.00 2.85
6579 7050 7.576861 TTTTCTTACGTTGGGAATTCTTCTT 57.423 32.000 5.23 0.00 0.00 2.52
6580 7051 8.680039 TTTTCTTACGTTGGGAATTCTTCTTA 57.320 30.769 5.23 0.00 0.00 2.10
6581 7052 7.900782 TTCTTACGTTGGGAATTCTTCTTAG 57.099 36.000 5.23 0.00 0.00 2.18
6582 7053 6.403878 TCTTACGTTGGGAATTCTTCTTAGG 58.596 40.000 5.23 0.99 0.00 2.69
6583 7054 3.951663 ACGTTGGGAATTCTTCTTAGGG 58.048 45.455 5.23 0.00 0.00 3.53
6584 7055 2.683362 CGTTGGGAATTCTTCTTAGGGC 59.317 50.000 5.23 0.00 0.00 5.19
6585 7056 3.622455 CGTTGGGAATTCTTCTTAGGGCT 60.622 47.826 5.23 0.00 0.00 5.19
6586 7057 3.933861 TGGGAATTCTTCTTAGGGCTC 57.066 47.619 5.23 0.00 0.00 4.70
6587 7058 2.509964 TGGGAATTCTTCTTAGGGCTCC 59.490 50.000 5.23 0.00 0.00 4.70
6588 7059 2.780592 GGGAATTCTTCTTAGGGCTCCT 59.219 50.000 5.23 0.00 37.71 3.69
6589 7060 3.203263 GGGAATTCTTCTTAGGGCTCCTT 59.797 47.826 5.23 0.00 34.61 3.36
6590 7061 4.325422 GGGAATTCTTCTTAGGGCTCCTTT 60.325 45.833 5.23 0.00 34.61 3.11
6591 7062 4.642437 GGAATTCTTCTTAGGGCTCCTTTG 59.358 45.833 5.23 0.00 34.61 2.77
6592 7063 4.936685 ATTCTTCTTAGGGCTCCTTTGT 57.063 40.909 0.00 0.00 34.61 2.83
6593 7064 4.724279 TTCTTCTTAGGGCTCCTTTGTT 57.276 40.909 0.00 0.00 34.61 2.83
6594 7065 4.021102 TCTTCTTAGGGCTCCTTTGTTG 57.979 45.455 0.00 0.00 34.61 3.33
6595 7066 2.200373 TCTTAGGGCTCCTTTGTTGC 57.800 50.000 0.00 0.00 34.61 4.17
6596 7067 1.423541 TCTTAGGGCTCCTTTGTTGCA 59.576 47.619 0.00 0.00 34.61 4.08
6597 7068 2.158534 TCTTAGGGCTCCTTTGTTGCAA 60.159 45.455 0.00 0.00 34.61 4.08
6598 7069 2.373335 TAGGGCTCCTTTGTTGCAAA 57.627 45.000 0.00 0.00 34.61 3.68
6599 7070 1.043022 AGGGCTCCTTTGTTGCAAAG 58.957 50.000 0.00 13.02 0.00 2.77
6600 7071 1.039856 GGGCTCCTTTGTTGCAAAGA 58.960 50.000 19.50 7.88 0.00 2.52
6601 7072 1.412343 GGGCTCCTTTGTTGCAAAGAA 59.588 47.619 19.50 2.21 0.00 2.52
6602 7073 2.158971 GGGCTCCTTTGTTGCAAAGAAA 60.159 45.455 19.50 2.57 36.67 2.52
6603 7074 3.494924 GGGCTCCTTTGTTGCAAAGAAAT 60.495 43.478 19.50 0.00 38.47 2.17
6604 7075 4.262420 GGGCTCCTTTGTTGCAAAGAAATA 60.262 41.667 19.50 5.07 38.47 1.40
6605 7076 4.686091 GGCTCCTTTGTTGCAAAGAAATAC 59.314 41.667 19.50 7.13 38.47 1.89
6606 7077 5.509670 GGCTCCTTTGTTGCAAAGAAATACT 60.510 40.000 19.50 0.00 38.47 2.12
6607 7078 6.294508 GGCTCCTTTGTTGCAAAGAAATACTA 60.295 38.462 19.50 0.00 38.47 1.82
6608 7079 7.315890 GCTCCTTTGTTGCAAAGAAATACTAT 58.684 34.615 19.50 0.00 38.47 2.12
6609 7080 8.458843 GCTCCTTTGTTGCAAAGAAATACTATA 58.541 33.333 19.50 0.00 38.47 1.31
6610 7081 9.994432 CTCCTTTGTTGCAAAGAAATACTATAG 57.006 33.333 19.50 0.00 38.47 1.31
6611 7082 8.956426 TCCTTTGTTGCAAAGAAATACTATAGG 58.044 33.333 19.50 0.00 38.47 2.57
6612 7083 8.956426 CCTTTGTTGCAAAGAAATACTATAGGA 58.044 33.333 19.50 0.00 38.47 2.94
6630 7101 9.774413 ACTATAGGATATTTTTCTTACGTTGGG 57.226 33.333 4.43 0.00 0.00 4.12
6631 7102 9.991906 CTATAGGATATTTTTCTTACGTTGGGA 57.008 33.333 0.00 0.00 0.00 4.37
6633 7104 9.862149 ATAGGATATTTTTCTTACGTTGGGAAT 57.138 29.630 0.00 0.00 0.00 3.01
6634 7105 8.589701 AGGATATTTTTCTTACGTTGGGAATT 57.410 30.769 0.00 0.00 0.00 2.17
6635 7106 8.683615 AGGATATTTTTCTTACGTTGGGAATTC 58.316 33.333 0.00 0.00 0.00 2.17
6636 7107 8.683615 GGATATTTTTCTTACGTTGGGAATTCT 58.316 33.333 5.23 0.00 0.00 2.40
6639 7110 7.576861 TTTTTCTTACGTTGGGAATTCTTCT 57.423 32.000 5.23 0.00 0.00 2.85
6640 7111 7.576861 TTTTCTTACGTTGGGAATTCTTCTT 57.423 32.000 5.23 0.00 0.00 2.52
6641 7112 8.680039 TTTTCTTACGTTGGGAATTCTTCTTA 57.320 30.769 5.23 0.00 0.00 2.10
6642 7113 7.900782 TTCTTACGTTGGGAATTCTTCTTAG 57.099 36.000 5.23 0.00 0.00 2.18
6643 7114 6.403878 TCTTACGTTGGGAATTCTTCTTAGG 58.596 40.000 5.23 0.99 0.00 2.69
6644 7115 3.951663 ACGTTGGGAATTCTTCTTAGGG 58.048 45.455 5.23 0.00 0.00 3.53
6645 7116 2.683362 CGTTGGGAATTCTTCTTAGGGC 59.317 50.000 5.23 0.00 0.00 5.19
6646 7117 3.622455 CGTTGGGAATTCTTCTTAGGGCT 60.622 47.826 5.23 0.00 0.00 5.19
6647 7118 3.933861 TGGGAATTCTTCTTAGGGCTC 57.066 47.619 5.23 0.00 0.00 4.70
6648 7119 2.509964 TGGGAATTCTTCTTAGGGCTCC 59.490 50.000 5.23 0.00 0.00 4.70
6649 7120 2.780592 GGGAATTCTTCTTAGGGCTCCT 59.219 50.000 5.23 0.00 37.71 3.69
6650 7121 3.203263 GGGAATTCTTCTTAGGGCTCCTT 59.797 47.826 5.23 0.00 34.61 3.36
6651 7122 4.325422 GGGAATTCTTCTTAGGGCTCCTTT 60.325 45.833 5.23 0.00 34.61 3.11
6652 7123 4.642437 GGAATTCTTCTTAGGGCTCCTTTG 59.358 45.833 5.23 0.00 34.61 2.77
6653 7124 5.501156 GAATTCTTCTTAGGGCTCCTTTGA 58.499 41.667 0.00 0.00 34.61 2.69
6654 7125 4.993705 TTCTTCTTAGGGCTCCTTTGAA 57.006 40.909 0.00 4.43 34.61 2.69
6655 7126 4.559862 TCTTCTTAGGGCTCCTTTGAAG 57.440 45.455 18.63 18.63 40.07 3.02
6656 7127 3.910627 TCTTCTTAGGGCTCCTTTGAAGT 59.089 43.478 21.05 0.00 39.88 3.01
6657 7128 3.983044 TCTTAGGGCTCCTTTGAAGTC 57.017 47.619 0.00 0.00 34.61 3.01
6658 7129 2.572104 TCTTAGGGCTCCTTTGAAGTCC 59.428 50.000 0.00 0.00 34.61 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.648112 CCAATGATGATTTAATTGCAGACAGAG 59.352 37.037 0.00 0.00 31.34 3.35
44 45 7.485810 TCCAATGATGATTTAATTGCAGACAG 58.514 34.615 0.00 0.00 31.34 3.51
46 47 8.882415 AATCCAATGATGATTTAATTGCAGAC 57.118 30.769 0.00 0.00 31.34 3.51
47 48 8.145767 GGAATCCAATGATGATTTAATTGCAGA 58.854 33.333 0.00 0.00 32.74 4.26
49 50 8.025270 AGGAATCCAATGATGATTTAATTGCA 57.975 30.769 0.61 0.00 32.74 4.08
50 51 8.897872 AAGGAATCCAATGATGATTTAATTGC 57.102 30.769 0.61 0.00 32.74 3.56
82 92 1.066215 TGATGTGGAACGTGATGGGAG 60.066 52.381 0.00 0.00 42.39 4.30
172 191 1.745489 GTCGGATGTTCACCTGGGC 60.745 63.158 0.00 0.00 0.00 5.36
174 193 1.078426 GGGTCGGATGTTCACCTGG 60.078 63.158 0.00 0.00 0.00 4.45
184 203 2.108970 GGTGTTCTAGAAGGGTCGGAT 58.891 52.381 5.12 0.00 0.00 4.18
193 216 2.304761 AGGCGAATTGGGTGTTCTAGAA 59.695 45.455 0.00 0.00 0.00 2.10
194 217 1.906574 AGGCGAATTGGGTGTTCTAGA 59.093 47.619 0.00 0.00 0.00 2.43
195 218 2.280628 GAGGCGAATTGGGTGTTCTAG 58.719 52.381 0.00 0.00 0.00 2.43
196 219 1.065709 GGAGGCGAATTGGGTGTTCTA 60.066 52.381 0.00 0.00 0.00 2.10
197 220 0.322546 GGAGGCGAATTGGGTGTTCT 60.323 55.000 0.00 0.00 0.00 3.01
198 221 0.322546 AGGAGGCGAATTGGGTGTTC 60.323 55.000 0.00 0.00 0.00 3.18
199 222 0.322546 GAGGAGGCGAATTGGGTGTT 60.323 55.000 0.00 0.00 0.00 3.32
200 223 1.201429 AGAGGAGGCGAATTGGGTGT 61.201 55.000 0.00 0.00 0.00 4.16
201 224 0.035056 AAGAGGAGGCGAATTGGGTG 60.035 55.000 0.00 0.00 0.00 4.61
202 225 0.698818 AAAGAGGAGGCGAATTGGGT 59.301 50.000 0.00 0.00 0.00 4.51
203 226 1.839424 AAAAGAGGAGGCGAATTGGG 58.161 50.000 0.00 0.00 0.00 4.12
228 251 9.946165 GGATTTCTCGAAAAAGAAAAGTTAGAA 57.054 29.630 3.45 0.00 45.62 2.10
229 252 9.338622 AGGATTTCTCGAAAAAGAAAAGTTAGA 57.661 29.630 3.45 0.00 45.62 2.10
230 253 9.600646 GAGGATTTCTCGAAAAAGAAAAGTTAG 57.399 33.333 3.45 0.00 45.62 2.34
231 254 9.338622 AGAGGATTTCTCGAAAAAGAAAAGTTA 57.661 29.630 3.45 0.00 45.62 2.24
232 255 8.226819 AGAGGATTTCTCGAAAAAGAAAAGTT 57.773 30.769 3.45 0.00 45.62 2.66
233 256 7.809546 AGAGGATTTCTCGAAAAAGAAAAGT 57.190 32.000 3.45 0.00 45.62 2.66
234 257 9.521503 AAAAGAGGATTTCTCGAAAAAGAAAAG 57.478 29.630 3.45 0.00 45.62 2.27
235 258 9.869757 AAAAAGAGGATTTCTCGAAAAAGAAAA 57.130 25.926 3.45 0.00 45.62 2.29
236 259 9.516314 GAAAAAGAGGATTTCTCGAAAAAGAAA 57.484 29.630 1.91 1.91 46.31 2.52
237 260 8.903820 AGAAAAAGAGGATTTCTCGAAAAAGAA 58.096 29.630 0.00 0.00 46.82 2.52
238 261 8.451908 AGAAAAAGAGGATTTCTCGAAAAAGA 57.548 30.769 0.00 0.00 46.82 2.52
240 263 9.946165 GTTAGAAAAAGAGGATTTCTCGAAAAA 57.054 29.630 4.91 0.00 46.82 1.94
241 264 9.116067 TGTTAGAAAAAGAGGATTTCTCGAAAA 57.884 29.630 4.91 0.00 46.82 2.29
242 265 8.671384 TGTTAGAAAAAGAGGATTTCTCGAAA 57.329 30.769 4.91 0.00 46.82 3.46
243 266 8.671384 TTGTTAGAAAAAGAGGATTTCTCGAA 57.329 30.769 4.91 0.00 46.82 3.71
244 267 8.557029 GTTTGTTAGAAAAAGAGGATTTCTCGA 58.443 33.333 4.91 0.00 46.82 4.04
245 268 7.803659 GGTTTGTTAGAAAAAGAGGATTTCTCG 59.196 37.037 4.91 0.00 46.82 4.04
249 272 6.548251 TCGGGTTTGTTAGAAAAAGAGGATTT 59.452 34.615 0.00 0.00 0.00 2.17
251 274 5.627135 TCGGGTTTGTTAGAAAAAGAGGAT 58.373 37.500 0.00 0.00 0.00 3.24
252 275 5.038651 TCGGGTTTGTTAGAAAAAGAGGA 57.961 39.130 0.00 0.00 0.00 3.71
321 344 3.855255 TTCAATCTGTGGGTCTGTTGA 57.145 42.857 0.00 0.00 0.00 3.18
408 539 0.106918 TGGTTTTCCGTGTGGCTCTT 60.107 50.000 0.00 0.00 44.36 2.85
412 543 0.249280 CCTTTGGTTTTCCGTGTGGC 60.249 55.000 0.00 0.00 44.36 5.01
516 648 1.500783 ATGGTAGGCTGGCTTGGTGT 61.501 55.000 9.68 0.00 0.00 4.16
530 674 0.107214 GGCTGCTGCTTGGTATGGTA 60.107 55.000 15.64 0.00 39.59 3.25
532 676 2.475466 CGGCTGCTGCTTGGTATGG 61.475 63.158 15.64 0.00 39.59 2.74
533 677 2.475466 CCGGCTGCTGCTTGGTATG 61.475 63.158 15.64 0.00 39.59 2.39
534 678 2.124570 CCGGCTGCTGCTTGGTAT 60.125 61.111 15.64 0.00 39.59 2.73
535 679 3.315142 CTCCGGCTGCTGCTTGGTA 62.315 63.158 20.56 10.92 39.59 3.25
536 680 4.711949 CTCCGGCTGCTGCTTGGT 62.712 66.667 20.56 0.00 39.59 3.67
549 693 3.901797 AAACCCTTGGCTCGCTCCG 62.902 63.158 0.00 0.00 0.00 4.63
894 1046 1.512156 CGAACCAAACCCCTTCACCG 61.512 60.000 0.00 0.00 0.00 4.94
1530 1684 3.121030 CCAGAAGAAGGCACGGCG 61.121 66.667 4.80 4.80 0.00 6.46
1602 1768 0.395311 CGTAGGAGCAGGTGGAGGTA 60.395 60.000 0.00 0.00 0.00 3.08
1740 1906 4.847367 GGATGGGGGCTTGGCTGG 62.847 72.222 0.00 0.00 0.00 4.85
1786 1958 1.004918 GCTGACGGTACCTTGCTGT 60.005 57.895 10.90 0.00 0.00 4.40
1944 2116 0.461548 TCATGACTGGATCGGAGTGC 59.538 55.000 0.00 0.00 0.00 4.40
1972 2144 3.647649 CTCCACGCACATCGCTGGA 62.648 63.158 0.00 0.00 42.08 3.86
1998 2170 3.181445 TGAACACTGGTATTGGCTCAACT 60.181 43.478 0.00 0.00 0.00 3.16
2277 2461 3.268146 AGGCATCATGGGGATATGGTTA 58.732 45.455 0.00 0.00 33.95 2.85
2278 2462 2.076189 AGGCATCATGGGGATATGGTT 58.924 47.619 0.00 0.00 33.95 3.67
2279 2463 1.764327 AGGCATCATGGGGATATGGT 58.236 50.000 0.00 0.00 33.95 3.55
2423 2607 0.881118 TTCACCTTCAAGCGGATTGC 59.119 50.000 0.14 0.00 46.98 3.56
2424 2608 1.470098 CCTTCACCTTCAAGCGGATTG 59.530 52.381 0.00 0.00 40.52 2.67
2439 2623 6.303839 AGAATTGCCACTTAAACTACCTTCA 58.696 36.000 0.00 0.00 0.00 3.02
2598 2782 3.055458 TCTCGGCATACATCCTTTGTTCA 60.055 43.478 0.00 0.00 39.87 3.18
2930 3114 6.115446 TCCTTGTGATAAACTTCAGGCATAG 58.885 40.000 0.00 0.00 0.00 2.23
3056 3240 1.520600 CTGTTGCCCCGGTAAACCAC 61.521 60.000 0.00 0.00 35.14 4.16
3069 3253 3.624326 TGTACATTGCTGAACTGTTGC 57.376 42.857 0.00 0.00 0.00 4.17
3333 3517 7.995289 TGCATTCATGAAAGACGGTAATAATT 58.005 30.769 13.09 0.00 0.00 1.40
3334 3518 7.255242 CCTGCATTCATGAAAGACGGTAATAAT 60.255 37.037 13.09 0.00 0.00 1.28
3679 3865 9.938280 TTACTTTGTAGTACTAAAGATGTGCAT 57.062 29.630 20.17 3.78 36.61 3.96
3680 3866 9.938280 ATTACTTTGTAGTACTAAAGATGTGCA 57.062 29.630 20.17 3.85 36.61 4.57
4065 4252 2.147958 TCTGTAACCGTTGCAATGGAC 58.852 47.619 38.28 27.67 38.48 4.02
4247 4434 6.094603 AGTTTTTAAGATGTGGCAGCTGATAG 59.905 38.462 20.43 0.00 27.64 2.08
4253 4440 4.870363 TCAAGTTTTTAAGATGTGGCAGC 58.130 39.130 0.00 0.00 0.00 5.25
4488 4675 8.604890 GCCAGTCATAGTATAAAACAGAAGAAC 58.395 37.037 0.00 0.00 0.00 3.01
4508 4695 0.819259 TGAGGTGCAACAAGCCAGTC 60.819 55.000 3.64 0.00 44.83 3.51
4509 4696 0.178981 ATGAGGTGCAACAAGCCAGT 60.179 50.000 3.64 0.00 44.83 4.00
4524 4711 6.932356 AGCAGTGTATATTTCCAACATGAG 57.068 37.500 0.00 0.00 0.00 2.90
4529 4716 6.582295 CACAACAAGCAGTGTATATTTCCAAC 59.418 38.462 0.00 0.00 40.60 3.77
4530 4717 6.488344 TCACAACAAGCAGTGTATATTTCCAA 59.512 34.615 0.00 0.00 40.60 3.53
4531 4718 6.000840 TCACAACAAGCAGTGTATATTTCCA 58.999 36.000 0.00 0.00 40.60 3.53
4532 4719 6.494893 TCACAACAAGCAGTGTATATTTCC 57.505 37.500 0.00 0.00 40.60 3.13
4540 4727 8.623903 CCATATTATTATCACAACAAGCAGTGT 58.376 33.333 0.00 0.00 44.64 3.55
4541 4728 8.839343 TCCATATTATTATCACAACAAGCAGTG 58.161 33.333 0.00 0.00 37.10 3.66
4543 4730 8.839343 TGTCCATATTATTATCACAACAAGCAG 58.161 33.333 0.00 0.00 0.00 4.24
4560 4873 5.651612 TCACCCTCATGAATGTCCATATT 57.348 39.130 0.00 0.00 0.00 1.28
4576 4889 5.806654 AAGCAACAATACATTTTCACCCT 57.193 34.783 0.00 0.00 0.00 4.34
4599 4912 2.040813 AGGTGTGACTCATCAATTGCCT 59.959 45.455 0.00 0.00 36.31 4.75
4634 4947 7.197901 TCCCCAGCAAAATTCAAATCAATAT 57.802 32.000 0.00 0.00 0.00 1.28
4635 4948 6.617782 TCCCCAGCAAAATTCAAATCAATA 57.382 33.333 0.00 0.00 0.00 1.90
4644 4957 4.476628 ACAATGATCCCCAGCAAAATTC 57.523 40.909 0.00 0.00 0.00 2.17
4645 4958 4.141869 GCTACAATGATCCCCAGCAAAATT 60.142 41.667 0.00 0.00 0.00 1.82
4649 4962 1.565759 AGCTACAATGATCCCCAGCAA 59.434 47.619 0.00 0.00 0.00 3.91
4650 4963 1.216064 AGCTACAATGATCCCCAGCA 58.784 50.000 0.00 0.00 0.00 4.41
4651 4964 3.492102 TTAGCTACAATGATCCCCAGC 57.508 47.619 0.00 0.00 0.00 4.85
4653 4966 5.045213 TGAAGTTTAGCTACAATGATCCCCA 60.045 40.000 0.00 0.00 0.00 4.96
4664 4977 4.572795 GGAAGATGCCTGAAGTTTAGCTAC 59.427 45.833 0.00 0.00 0.00 3.58
4676 4997 0.460987 GTCTCCACGGAAGATGCCTG 60.461 60.000 0.00 0.00 0.00 4.85
4690 5011 1.003580 TGCATGTTCCTTCCAGTCTCC 59.996 52.381 0.00 0.00 0.00 3.71
4693 5014 2.191128 ACTGCATGTTCCTTCCAGTC 57.809 50.000 0.00 0.00 31.61 3.51
4734 5057 9.479549 AATAGTCATTTCATGTGGTTAGGATTT 57.520 29.630 0.00 0.00 0.00 2.17
4740 5063 9.747898 ACCTAAAATAGTCATTTCATGTGGTTA 57.252 29.630 0.00 0.00 33.09 2.85
4741 5064 8.650143 ACCTAAAATAGTCATTTCATGTGGTT 57.350 30.769 0.00 0.00 33.09 3.67
4742 5065 9.174166 GTACCTAAAATAGTCATTTCATGTGGT 57.826 33.333 0.00 0.00 33.09 4.16
4768 5091 7.142021 AGTAGCTCATCGTTACATAGTTGATG 58.858 38.462 0.00 0.00 41.79 3.07
4769 5092 7.278461 AGTAGCTCATCGTTACATAGTTGAT 57.722 36.000 0.00 0.00 32.34 2.57
4770 5093 6.694877 AGTAGCTCATCGTTACATAGTTGA 57.305 37.500 0.00 0.00 32.34 3.18
4771 5094 8.906693 CATAAGTAGCTCATCGTTACATAGTTG 58.093 37.037 0.00 0.00 32.34 3.16
4772 5095 8.630917 ACATAAGTAGCTCATCGTTACATAGTT 58.369 33.333 0.00 0.00 32.34 2.24
4773 5096 8.167605 ACATAAGTAGCTCATCGTTACATAGT 57.832 34.615 0.00 0.00 32.34 2.12
4774 5097 9.544314 GTACATAAGTAGCTCATCGTTACATAG 57.456 37.037 0.00 0.00 32.34 2.23
4775 5098 9.281371 AGTACATAAGTAGCTCATCGTTACATA 57.719 33.333 0.00 0.00 32.34 2.29
4776 5099 8.167605 AGTACATAAGTAGCTCATCGTTACAT 57.832 34.615 0.00 0.00 32.34 2.29
4777 5100 7.563888 AGTACATAAGTAGCTCATCGTTACA 57.436 36.000 0.00 0.00 32.34 2.41
4778 5101 9.941664 TTTAGTACATAAGTAGCTCATCGTTAC 57.058 33.333 0.00 0.00 0.00 2.50
4809 5132 9.847224 AAACGTCTTATATTTTGATATGGAGGT 57.153 29.630 0.00 0.00 0.00 3.85
4826 5149 9.185192 GCTAGTTTAGTCTACAAAAACGTCTTA 57.815 33.333 0.00 0.00 37.99 2.10
4827 5150 7.170489 GGCTAGTTTAGTCTACAAAAACGTCTT 59.830 37.037 0.00 0.00 37.99 3.01
4828 5151 6.644181 GGCTAGTTTAGTCTACAAAAACGTCT 59.356 38.462 0.00 0.00 37.99 4.18
4829 5152 6.644181 AGGCTAGTTTAGTCTACAAAAACGTC 59.356 38.462 0.00 0.00 39.36 4.34
4830 5153 6.519382 AGGCTAGTTTAGTCTACAAAAACGT 58.481 36.000 0.00 0.00 39.36 3.99
4831 5154 7.417496 AAGGCTAGTTTAGTCTACAAAAACG 57.583 36.000 0.00 0.00 40.48 3.60
4858 5181 8.899771 CCTCCGTACCAAAATATAAGATGTTTT 58.100 33.333 0.00 0.00 34.50 2.43
4859 5182 8.269317 TCCTCCGTACCAAAATATAAGATGTTT 58.731 33.333 0.00 0.00 0.00 2.83
4860 5183 7.798071 TCCTCCGTACCAAAATATAAGATGTT 58.202 34.615 0.00 0.00 0.00 2.71
4861 5184 7.070821 ACTCCTCCGTACCAAAATATAAGATGT 59.929 37.037 0.00 0.00 0.00 3.06
4862 5185 7.442656 ACTCCTCCGTACCAAAATATAAGATG 58.557 38.462 0.00 0.00 0.00 2.90
4863 5186 7.613551 ACTCCTCCGTACCAAAATATAAGAT 57.386 36.000 0.00 0.00 0.00 2.40
4864 5187 8.716674 ATACTCCTCCGTACCAAAATATAAGA 57.283 34.615 0.00 0.00 0.00 2.10
4865 5188 9.774413 AAATACTCCTCCGTACCAAAATATAAG 57.226 33.333 0.00 0.00 0.00 1.73
4903 5226 9.290988 TGGCAAACAAGTAATTCTTTAGTATGA 57.709 29.630 0.00 0.00 33.63 2.15
4917 5240 5.359576 ACAAAACTCAGATGGCAAACAAGTA 59.640 36.000 0.00 0.00 0.00 2.24
4949 5273 8.768501 ACATGGATGTTTCAGTAGATAGAGTA 57.231 34.615 0.00 0.00 37.90 2.59
4950 5274 7.343057 TGACATGGATGTTTCAGTAGATAGAGT 59.657 37.037 0.00 0.00 41.95 3.24
4951 5275 7.651304 GTGACATGGATGTTTCAGTAGATAGAG 59.349 40.741 0.00 0.00 41.95 2.43
4952 5276 7.124147 TGTGACATGGATGTTTCAGTAGATAGA 59.876 37.037 0.00 0.00 41.95 1.98
4953 5277 7.267857 TGTGACATGGATGTTTCAGTAGATAG 58.732 38.462 0.00 0.00 41.95 2.08
4955 5279 6.053632 TGTGACATGGATGTTTCAGTAGAT 57.946 37.500 0.00 0.00 41.95 1.98
4957 5281 5.645067 ACATGTGACATGGATGTTTCAGTAG 59.355 40.000 27.23 0.00 41.95 2.57
4958 5282 5.412286 CACATGTGACATGGATGTTTCAGTA 59.588 40.000 27.23 0.00 41.95 2.74
4959 5283 4.216902 CACATGTGACATGGATGTTTCAGT 59.783 41.667 27.23 1.56 41.95 3.41
4960 5284 4.380128 CCACATGTGACATGGATGTTTCAG 60.380 45.833 27.46 0.28 41.95 3.02
4961 5285 3.506844 CCACATGTGACATGGATGTTTCA 59.493 43.478 27.46 0.00 41.95 2.69
4962 5286 3.507233 ACCACATGTGACATGGATGTTTC 59.493 43.478 27.46 0.00 41.95 2.78
4974 5298 5.755409 AATTACCTACAGACCACATGTGA 57.245 39.130 27.46 4.91 32.02 3.58
4982 5311 5.816258 GTGAAGCCTTAATTACCTACAGACC 59.184 44.000 0.00 0.00 0.00 3.85
4987 5316 9.445878 ACTAAAAGTGAAGCCTTAATTACCTAC 57.554 33.333 0.00 0.00 0.00 3.18
4995 5324 7.324178 TGCAAAAACTAAAAGTGAAGCCTTAA 58.676 30.769 0.00 0.00 0.00 1.85
5045 5374 4.201841 TGACAGTTCGCATGAGCAATATTG 60.202 41.667 11.27 11.27 42.27 1.90
5076 5405 3.056393 CACCAACCTGCATCATCAACATT 60.056 43.478 0.00 0.00 0.00 2.71
5077 5406 2.494471 CACCAACCTGCATCATCAACAT 59.506 45.455 0.00 0.00 0.00 2.71
5078 5407 1.887854 CACCAACCTGCATCATCAACA 59.112 47.619 0.00 0.00 0.00 3.33
5079 5408 2.161855 TCACCAACCTGCATCATCAAC 58.838 47.619 0.00 0.00 0.00 3.18
5080 5409 2.583024 TCACCAACCTGCATCATCAA 57.417 45.000 0.00 0.00 0.00 2.57
5081 5410 2.240414 AGATCACCAACCTGCATCATCA 59.760 45.455 0.00 0.00 0.00 3.07
5121 5540 2.292785 ACCAGAGATGAGGGTCTGACAT 60.293 50.000 10.38 0.00 42.49 3.06
5250 5669 7.755822 CGTAAACCTGGATATAGCTATCTGAAC 59.244 40.741 10.16 0.00 35.14 3.18
5455 5901 9.587772 TTAAATAACAGCTTACATCAGACTCTC 57.412 33.333 0.00 0.00 0.00 3.20
5476 5923 4.022068 CACAATGCCACCTGACAGTTAAAT 60.022 41.667 0.93 0.00 0.00 1.40
5526 5974 1.226802 CTCTGGGTCGCATGAGTCG 60.227 63.158 0.00 0.00 0.00 4.18
5628 6076 1.377725 CTTCTGGGACGCTGCCATT 60.378 57.895 0.00 0.00 37.20 3.16
5634 6082 2.129555 ATTGCACCTTCTGGGACGCT 62.130 55.000 0.00 0.00 37.71 5.07
5680 6128 1.132881 TGGATGGCCCCAGAAGTTTTT 60.133 47.619 0.00 0.00 0.00 1.94
5790 6243 0.578211 GACGGACGCAACGAAAGAAA 59.422 50.000 0.00 0.00 34.93 2.52
6007 6460 7.774157 TCGGACTCTCTATAACTGACAATAAGT 59.226 37.037 0.00 0.00 0.00 2.24
6051 6515 1.856920 ACCCACAAGAAAAGGAAGGGA 59.143 47.619 0.00 0.00 38.21 4.20
6056 6520 6.713276 TCGATTATTACCCACAAGAAAAGGA 58.287 36.000 0.00 0.00 0.00 3.36
6161 6629 4.073549 CCCAAAACTTGTATTACCACCGA 58.926 43.478 0.00 0.00 0.00 4.69
6162 6630 4.073549 TCCCAAAACTTGTATTACCACCG 58.926 43.478 0.00 0.00 0.00 4.94
6327 6798 6.392354 ACATGCTGACAAGGTAAATCAAATG 58.608 36.000 0.00 0.00 0.00 2.32
6332 6803 5.376854 ACAACATGCTGACAAGGTAAATC 57.623 39.130 2.44 0.00 0.00 2.17
6333 6804 5.278957 GGAACAACATGCTGACAAGGTAAAT 60.279 40.000 2.44 0.00 0.00 1.40
6334 6805 4.037446 GGAACAACATGCTGACAAGGTAAA 59.963 41.667 2.44 0.00 0.00 2.01
6339 6810 2.227388 GAGGGAACAACATGCTGACAAG 59.773 50.000 2.44 0.00 0.00 3.16
6344 6815 1.901591 ACAGAGGGAACAACATGCTG 58.098 50.000 0.00 0.00 0.00 4.41
6386 6857 4.141344 ACAAAGGAGCCCTAAGTACAACAA 60.141 41.667 0.00 0.00 31.13 2.83
6397 6868 3.312736 TCTTTGAAACAAAGGAGCCCT 57.687 42.857 19.43 0.00 33.87 5.19
6441 6912 4.488770 AGCCCTAAGAAAAATTCCCAACA 58.511 39.130 0.00 0.00 0.00 3.33
6444 6915 3.336694 AGGAGCCCTAAGAAAAATTCCCA 59.663 43.478 0.00 0.00 28.47 4.37
6450 6921 6.155393 TCAAAACAAAGGAGCCCTAAGAAAAA 59.845 34.615 0.00 0.00 31.13 1.94
6497 6968 8.318412 GCCCTAAGAAAAATTCCCAAATTAAGA 58.682 33.333 0.00 0.00 33.93 2.10
6498 6969 8.321353 AGCCCTAAGAAAAATTCCCAAATTAAG 58.679 33.333 0.00 0.00 33.93 1.85
6499 6970 8.213489 AGCCCTAAGAAAAATTCCCAAATTAA 57.787 30.769 0.00 0.00 33.93 1.40
6500 6971 7.093068 GGAGCCCTAAGAAAAATTCCCAAATTA 60.093 37.037 0.00 0.00 33.93 1.40
6501 6972 6.296432 GGAGCCCTAAGAAAAATTCCCAAATT 60.296 38.462 0.00 0.00 36.64 1.82
6502 6973 5.189736 GGAGCCCTAAGAAAAATTCCCAAAT 59.810 40.000 0.00 0.00 0.00 2.32
6503 6974 4.530553 GGAGCCCTAAGAAAAATTCCCAAA 59.469 41.667 0.00 0.00 0.00 3.28
6504 6975 4.093743 GGAGCCCTAAGAAAAATTCCCAA 58.906 43.478 0.00 0.00 0.00 4.12
6505 6976 3.336694 AGGAGCCCTAAGAAAAATTCCCA 59.663 43.478 0.00 0.00 28.47 4.37
6506 6977 3.982516 AGGAGCCCTAAGAAAAATTCCC 58.017 45.455 0.00 0.00 28.47 3.97
6507 6978 5.246203 ACAAAGGAGCCCTAAGAAAAATTCC 59.754 40.000 0.00 0.00 31.13 3.01
6508 6979 6.346477 ACAAAGGAGCCCTAAGAAAAATTC 57.654 37.500 0.00 0.00 31.13 2.17
6509 6980 6.747414 AACAAAGGAGCCCTAAGAAAAATT 57.253 33.333 0.00 0.00 31.13 1.82
6510 6981 6.326323 TGAAACAAAGGAGCCCTAAGAAAAAT 59.674 34.615 0.00 0.00 31.13 1.82
6511 6982 5.659079 TGAAACAAAGGAGCCCTAAGAAAAA 59.341 36.000 0.00 0.00 31.13 1.94
6512 6983 5.205056 TGAAACAAAGGAGCCCTAAGAAAA 58.795 37.500 0.00 0.00 31.13 2.29
6513 6984 4.798882 TGAAACAAAGGAGCCCTAAGAAA 58.201 39.130 0.00 0.00 31.13 2.52
6514 6985 4.447138 TGAAACAAAGGAGCCCTAAGAA 57.553 40.909 0.00 0.00 31.13 2.52
6515 6986 4.447138 TTGAAACAAAGGAGCCCTAAGA 57.553 40.909 0.00 0.00 31.13 2.10
6516 6987 4.827284 TCTTTGAAACAAAGGAGCCCTAAG 59.173 41.667 19.43 0.00 31.13 2.18
6517 6988 4.798882 TCTTTGAAACAAAGGAGCCCTAA 58.201 39.130 19.43 0.83 31.13 2.69
6518 6989 4.447138 TCTTTGAAACAAAGGAGCCCTA 57.553 40.909 19.43 1.41 31.13 3.53
6519 6990 3.312736 TCTTTGAAACAAAGGAGCCCT 57.687 42.857 19.43 0.00 33.87 5.19
6520 6991 4.400529 TTTCTTTGAAACAAAGGAGCCC 57.599 40.909 19.43 0.00 0.00 5.19
6521 6992 6.749139 AGTATTTCTTTGAAACAAAGGAGCC 58.251 36.000 19.43 7.03 0.00 4.70
6543 7014 9.774413 CCCAACGTAAGAAAAATATCCTATAGT 57.226 33.333 0.00 0.00 43.62 2.12
6544 7015 9.991906 TCCCAACGTAAGAAAAATATCCTATAG 57.008 33.333 0.00 0.00 43.62 1.31
6546 7017 9.862149 ATTCCCAACGTAAGAAAAATATCCTAT 57.138 29.630 0.00 0.00 43.62 2.57
6547 7018 9.689501 AATTCCCAACGTAAGAAAAATATCCTA 57.310 29.630 0.00 0.00 43.62 2.94
6548 7019 8.589701 AATTCCCAACGTAAGAAAAATATCCT 57.410 30.769 0.00 0.00 43.62 3.24
6549 7020 8.683615 AGAATTCCCAACGTAAGAAAAATATCC 58.316 33.333 0.65 0.00 43.62 2.59
6564 7035 7.340897 AGGAGCCCTAAGAAGAATTCCCAAC 62.341 48.000 0.65 0.00 37.83 3.77
6565 7036 5.321458 AGGAGCCCTAAGAAGAATTCCCAA 61.321 45.833 0.65 0.00 37.83 4.12
6566 7037 3.830536 AGGAGCCCTAAGAAGAATTCCCA 60.831 47.826 0.65 0.00 37.83 4.37
6567 7038 2.780592 AGGAGCCCTAAGAAGAATTCCC 59.219 50.000 0.65 0.00 37.83 3.97
6568 7039 4.511786 AAGGAGCCCTAAGAAGAATTCC 57.488 45.455 0.65 0.00 38.64 3.01
6569 7040 5.257262 ACAAAGGAGCCCTAAGAAGAATTC 58.743 41.667 0.00 0.00 38.29 2.17
6570 7041 5.262455 ACAAAGGAGCCCTAAGAAGAATT 57.738 39.130 0.00 0.00 31.13 2.17
6571 7042 4.936685 ACAAAGGAGCCCTAAGAAGAAT 57.063 40.909 0.00 0.00 31.13 2.40
6572 7043 4.398319 CAACAAAGGAGCCCTAAGAAGAA 58.602 43.478 0.00 0.00 31.13 2.52
6573 7044 3.810743 GCAACAAAGGAGCCCTAAGAAGA 60.811 47.826 0.00 0.00 31.13 2.87
6574 7045 2.489722 GCAACAAAGGAGCCCTAAGAAG 59.510 50.000 0.00 0.00 31.13 2.85
6575 7046 2.158534 TGCAACAAAGGAGCCCTAAGAA 60.159 45.455 0.00 0.00 31.13 2.52
6576 7047 1.423541 TGCAACAAAGGAGCCCTAAGA 59.576 47.619 0.00 0.00 31.13 2.10
6577 7048 1.909700 TGCAACAAAGGAGCCCTAAG 58.090 50.000 0.00 0.00 31.13 2.18
6578 7049 2.373335 TTGCAACAAAGGAGCCCTAA 57.627 45.000 0.00 0.00 31.13 2.69
6579 7050 2.158534 TCTTTGCAACAAAGGAGCCCTA 60.159 45.455 17.44 0.00 31.13 3.53
6580 7051 1.043022 CTTTGCAACAAAGGAGCCCT 58.957 50.000 11.39 0.00 33.87 5.19
6581 7052 1.039856 TCTTTGCAACAAAGGAGCCC 58.960 50.000 17.44 0.00 0.00 5.19
6582 7053 2.888834 TTCTTTGCAACAAAGGAGCC 57.111 45.000 17.44 0.00 0.00 4.70
6583 7054 5.532557 AGTATTTCTTTGCAACAAAGGAGC 58.467 37.500 17.44 6.07 0.00 4.70
6584 7055 9.994432 CTATAGTATTTCTTTGCAACAAAGGAG 57.006 33.333 17.44 0.00 0.00 3.69
6585 7056 8.956426 CCTATAGTATTTCTTTGCAACAAAGGA 58.044 33.333 17.44 8.39 0.00 3.36
6586 7057 8.956426 TCCTATAGTATTTCTTTGCAACAAAGG 58.044 33.333 17.44 0.00 0.00 3.11
6604 7075 9.774413 CCCAACGTAAGAAAAATATCCTATAGT 57.226 33.333 0.00 0.00 43.62 2.12
6605 7076 9.991906 TCCCAACGTAAGAAAAATATCCTATAG 57.008 33.333 0.00 0.00 43.62 1.31
6607 7078 9.862149 ATTCCCAACGTAAGAAAAATATCCTAT 57.138 29.630 0.00 0.00 43.62 2.57
6608 7079 9.689501 AATTCCCAACGTAAGAAAAATATCCTA 57.310 29.630 0.00 0.00 43.62 2.94
6609 7080 8.589701 AATTCCCAACGTAAGAAAAATATCCT 57.410 30.769 0.00 0.00 43.62 3.24
6610 7081 8.683615 AGAATTCCCAACGTAAGAAAAATATCC 58.316 33.333 0.65 0.00 43.62 2.59
6625 7096 7.340897 AGGAGCCCTAAGAAGAATTCCCAAC 62.341 48.000 0.65 0.00 37.83 3.77
6626 7097 5.321458 AGGAGCCCTAAGAAGAATTCCCAA 61.321 45.833 0.65 0.00 37.83 4.12
6627 7098 3.830536 AGGAGCCCTAAGAAGAATTCCCA 60.831 47.826 0.65 0.00 37.83 4.37
6628 7099 2.780592 AGGAGCCCTAAGAAGAATTCCC 59.219 50.000 0.65 0.00 37.83 3.97
6629 7100 4.511786 AAGGAGCCCTAAGAAGAATTCC 57.488 45.455 0.65 0.00 38.64 3.01
6630 7101 5.501156 TCAAAGGAGCCCTAAGAAGAATTC 58.499 41.667 0.00 0.00 38.29 2.17
6631 7102 5.520748 TCAAAGGAGCCCTAAGAAGAATT 57.479 39.130 0.00 0.00 31.13 2.17
6632 7103 5.014649 ACTTCAAAGGAGCCCTAAGAAGAAT 59.985 40.000 25.33 12.74 42.28 2.40
6633 7104 4.351111 ACTTCAAAGGAGCCCTAAGAAGAA 59.649 41.667 25.33 13.01 42.28 2.52
6634 7105 3.910627 ACTTCAAAGGAGCCCTAAGAAGA 59.089 43.478 25.33 8.52 42.28 2.87
6635 7106 4.257731 GACTTCAAAGGAGCCCTAAGAAG 58.742 47.826 21.13 21.13 43.76 2.85
6636 7107 3.009143 GGACTTCAAAGGAGCCCTAAGAA 59.991 47.826 8.42 7.96 31.13 2.52
6637 7108 2.572104 GGACTTCAAAGGAGCCCTAAGA 59.428 50.000 8.42 2.07 31.13 2.10
6638 7109 2.992593 GGACTTCAAAGGAGCCCTAAG 58.007 52.381 0.00 0.00 31.13 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.