Multiple sequence alignment - TraesCS7D01G500700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G500700 chr7D 100.000 4118 0 0 1 4118 606827202 606823085 0.000000e+00 7605.0
1 TraesCS7D01G500700 chr7D 92.977 299 20 1 4 302 175659719 175659422 6.320000e-118 435.0
2 TraesCS7D01G500700 chr7B 92.999 3385 146 39 754 4089 692999804 693003146 0.000000e+00 4854.0
3 TraesCS7D01G500700 chr7B 82.735 446 43 18 3604 4024 693017808 693018244 2.340000e-97 366.0
4 TraesCS7D01G500700 chr7B 85.567 97 11 3 3555 3649 693016720 693016815 9.420000e-17 99.0
5 TraesCS7D01G500700 chr7A 95.085 2991 120 14 1037 4010 699414379 699417359 0.000000e+00 4684.0
6 TraesCS7D01G500700 chr7A 93.645 299 17 2 291 588 699411600 699411897 2.920000e-121 446.0
7 TraesCS7D01G500700 chr7A 91.473 258 10 4 751 999 699413892 699414146 1.100000e-90 344.0
8 TraesCS7D01G500700 chr7A 87.554 233 28 1 3556 3787 699420614 699420846 6.790000e-68 268.0
9 TraesCS7D01G500700 chr7A 83.566 286 27 8 3698 3982 699462681 699462947 2.460000e-62 250.0
10 TraesCS7D01G500700 chr7A 90.909 77 6 1 610 686 699412926 699413001 7.280000e-18 102.0
11 TraesCS7D01G500700 chr2D 93.493 292 16 2 1 290 547803397 547803687 8.180000e-117 431.0
12 TraesCS7D01G500700 chr2D 93.448 290 16 2 4 290 478050691 478050402 1.060000e-115 427.0
13 TraesCS7D01G500700 chr6D 92.905 296 18 2 1 293 109267117 109267412 1.060000e-115 427.0
14 TraesCS7D01G500700 chr6D 93.103 290 18 2 4 292 467981803 467981515 1.370000e-114 424.0
15 TraesCS7D01G500700 chrUn 93.929 280 17 0 1 280 28419891 28420170 1.370000e-114 424.0
16 TraesCS7D01G500700 chrUn 87.324 71 9 0 1389 1459 473128143 473128073 9.490000e-12 82.4
17 TraesCS7D01G500700 chr4B 93.080 289 18 1 4 290 141456784 141456496 4.920000e-114 422.0
18 TraesCS7D01G500700 chr4B 81.279 219 18 12 1242 1459 466969532 466969336 5.510000e-34 156.0
19 TraesCS7D01G500700 chr2B 92.784 291 21 0 1 291 200578121 200578411 4.920000e-114 422.0
20 TraesCS7D01G500700 chr2B 80.365 219 20 11 1239 1456 111369521 111369717 1.190000e-30 145.0
21 TraesCS7D01G500700 chr4A 92.230 296 21 2 4 297 163915616 163915321 6.370000e-113 418.0
22 TraesCS7D01G500700 chr4A 82.110 218 16 9 1239 1455 84533488 84533683 9.160000e-37 165.0
23 TraesCS7D01G500700 chr4D 81.735 219 17 11 1242 1459 379912922 379912726 1.180000e-35 161.0
24 TraesCS7D01G500700 chr1B 79.909 219 21 11 1239 1456 654525835 654526031 5.550000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G500700 chr7D 606823085 606827202 4117 True 7605.0 7605 100.0000 1 4118 1 chr7D.!!$R2 4117
1 TraesCS7D01G500700 chr7B 692999804 693003146 3342 False 4854.0 4854 92.9990 754 4089 1 chr7B.!!$F1 3335
2 TraesCS7D01G500700 chr7B 693016720 693018244 1524 False 232.5 366 84.1510 3555 4024 2 chr7B.!!$F2 469
3 TraesCS7D01G500700 chr7A 699411600 699420846 9246 False 1168.8 4684 91.7332 291 4010 5 chr7A.!!$F2 3719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 2694 0.107268 CATCTCGCCATCACCCATCA 59.893 55.0 0.0 0.0 0.0 3.07 F
853 2697 0.249784 CTCGCCATCACCCATCAGAG 60.250 60.0 0.0 0.0 0.0 3.35 F
2400 4474 0.108138 AGTACACCGATGAGCTTGCC 60.108 55.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 4474 0.239347 CCCTGCGTTTCTGCTTCTTG 59.761 55.000 0.0 0.0 35.36 3.02 R
2583 4657 1.746615 CCACCAGTTGATGCTCCCG 60.747 63.158 0.0 0.0 0.00 5.14 R
3844 6988 0.108615 CAGGCTTCCTACCACTCACG 60.109 60.000 0.0 0.0 29.64 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.876300 CTAGTTGTGGAGTGCGCC 58.124 61.111 4.18 0.00 0.00 6.53
18 19 2.048597 TAGTTGTGGAGTGCGCCG 60.049 61.111 4.18 0.00 0.00 6.46
19 20 3.583276 TAGTTGTGGAGTGCGCCGG 62.583 63.158 4.18 0.00 0.00 6.13
20 21 4.980805 GTTGTGGAGTGCGCCGGA 62.981 66.667 5.05 0.00 0.00 5.14
21 22 4.980805 TTGTGGAGTGCGCCGGAC 62.981 66.667 5.05 0.00 0.00 4.79
25 26 4.681978 GGAGTGCGCCGGACTGTT 62.682 66.667 18.13 0.00 0.00 3.16
26 27 2.260434 GAGTGCGCCGGACTGTTA 59.740 61.111 18.13 0.00 0.00 2.41
27 28 1.805945 GAGTGCGCCGGACTGTTAG 60.806 63.158 18.13 0.00 0.00 2.34
28 29 2.813908 GTGCGCCGGACTGTTAGG 60.814 66.667 5.05 0.00 0.00 2.69
29 30 3.307906 TGCGCCGGACTGTTAGGT 61.308 61.111 5.05 0.00 0.00 3.08
30 31 2.813908 GCGCCGGACTGTTAGGTG 60.814 66.667 5.05 10.42 38.48 4.00
31 32 2.813908 CGCCGGACTGTTAGGTGC 60.814 66.667 5.05 0.00 0.00 5.01
32 33 2.436115 GCCGGACTGTTAGGTGCC 60.436 66.667 5.05 0.00 0.00 5.01
33 34 2.267961 CCGGACTGTTAGGTGCCC 59.732 66.667 0.00 0.00 0.00 5.36
34 35 2.267961 CGGACTGTTAGGTGCCCC 59.732 66.667 0.00 0.00 0.00 5.80
35 36 2.589157 CGGACTGTTAGGTGCCCCA 61.589 63.158 0.00 0.00 0.00 4.96
36 37 1.910580 CGGACTGTTAGGTGCCCCAT 61.911 60.000 0.00 0.00 0.00 4.00
37 38 1.209621 GGACTGTTAGGTGCCCCATA 58.790 55.000 0.00 0.00 0.00 2.74
38 39 1.134189 GGACTGTTAGGTGCCCCATAC 60.134 57.143 0.00 0.00 0.00 2.39
39 40 0.916809 ACTGTTAGGTGCCCCATACC 59.083 55.000 0.00 0.00 38.52 2.73
40 41 0.182775 CTGTTAGGTGCCCCATACCC 59.817 60.000 0.00 0.00 39.05 3.69
41 42 1.147600 GTTAGGTGCCCCATACCCG 59.852 63.158 0.00 0.00 39.05 5.28
42 43 2.073716 TTAGGTGCCCCATACCCGG 61.074 63.158 0.00 0.00 39.05 5.73
50 51 4.910585 CCATACCCGGCAGGCGTC 62.911 72.222 16.17 0.00 40.58 5.19
51 52 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
66 67 4.232905 TCCTGGTTGGGACCTCAG 57.767 61.111 0.00 0.00 46.66 3.35
67 68 1.538876 TCCTGGTTGGGACCTCAGG 60.539 63.158 15.03 15.03 46.66 3.86
68 69 1.847968 CCTGGTTGGGACCTCAGGT 60.848 63.158 0.00 0.00 46.66 4.00
82 83 5.941555 ACCTCAGGTCTTAGATGTTTAGG 57.058 43.478 0.00 0.00 0.00 2.69
83 84 5.342866 ACCTCAGGTCTTAGATGTTTAGGT 58.657 41.667 0.00 0.00 0.00 3.08
84 85 5.785940 ACCTCAGGTCTTAGATGTTTAGGTT 59.214 40.000 0.00 0.00 29.47 3.50
85 86 6.272558 ACCTCAGGTCTTAGATGTTTAGGTTT 59.727 38.462 0.00 0.00 29.47 3.27
86 87 6.595716 CCTCAGGTCTTAGATGTTTAGGTTTG 59.404 42.308 0.00 0.00 0.00 2.93
87 88 6.472887 TCAGGTCTTAGATGTTTAGGTTTGG 58.527 40.000 0.00 0.00 0.00 3.28
88 89 5.123979 CAGGTCTTAGATGTTTAGGTTTGGC 59.876 44.000 0.00 0.00 0.00 4.52
89 90 5.014228 AGGTCTTAGATGTTTAGGTTTGGCT 59.986 40.000 0.00 0.00 0.00 4.75
90 91 5.123979 GGTCTTAGATGTTTAGGTTTGGCTG 59.876 44.000 0.00 0.00 0.00 4.85
91 92 4.700213 TCTTAGATGTTTAGGTTTGGCTGC 59.300 41.667 0.00 0.00 0.00 5.25
92 93 1.812571 AGATGTTTAGGTTTGGCTGCG 59.187 47.619 0.00 0.00 0.00 5.18
93 94 1.810151 GATGTTTAGGTTTGGCTGCGA 59.190 47.619 0.00 0.00 0.00 5.10
94 95 1.904287 TGTTTAGGTTTGGCTGCGAT 58.096 45.000 0.00 0.00 0.00 4.58
95 96 3.060736 TGTTTAGGTTTGGCTGCGATA 57.939 42.857 0.00 0.00 0.00 2.92
96 97 3.616219 TGTTTAGGTTTGGCTGCGATAT 58.384 40.909 0.00 0.00 0.00 1.63
97 98 3.625764 TGTTTAGGTTTGGCTGCGATATC 59.374 43.478 0.00 0.00 0.00 1.63
98 99 3.838244 TTAGGTTTGGCTGCGATATCT 57.162 42.857 0.34 0.00 0.00 1.98
99 100 1.959042 AGGTTTGGCTGCGATATCTG 58.041 50.000 0.34 0.00 0.00 2.90
100 101 1.210478 AGGTTTGGCTGCGATATCTGT 59.790 47.619 0.34 0.00 0.00 3.41
101 102 2.017049 GGTTTGGCTGCGATATCTGTT 58.983 47.619 0.34 0.00 0.00 3.16
102 103 2.423538 GGTTTGGCTGCGATATCTGTTT 59.576 45.455 0.34 0.00 0.00 2.83
103 104 3.429085 GTTTGGCTGCGATATCTGTTTG 58.571 45.455 0.34 0.00 0.00 2.93
104 105 1.667236 TGGCTGCGATATCTGTTTGG 58.333 50.000 0.34 0.00 0.00 3.28
105 106 1.065491 TGGCTGCGATATCTGTTTGGT 60.065 47.619 0.34 0.00 0.00 3.67
106 107 2.169561 TGGCTGCGATATCTGTTTGGTA 59.830 45.455 0.34 0.00 0.00 3.25
107 108 3.181455 TGGCTGCGATATCTGTTTGGTAT 60.181 43.478 0.34 0.00 0.00 2.73
108 109 3.815401 GGCTGCGATATCTGTTTGGTATT 59.185 43.478 0.34 0.00 0.00 1.89
109 110 4.994852 GGCTGCGATATCTGTTTGGTATTA 59.005 41.667 0.34 0.00 0.00 0.98
110 111 5.120830 GGCTGCGATATCTGTTTGGTATTAG 59.879 44.000 0.34 0.00 0.00 1.73
111 112 5.120830 GCTGCGATATCTGTTTGGTATTAGG 59.879 44.000 0.34 0.00 0.00 2.69
112 113 4.994852 TGCGATATCTGTTTGGTATTAGGC 59.005 41.667 0.34 0.00 0.00 3.93
113 114 4.392138 GCGATATCTGTTTGGTATTAGGCC 59.608 45.833 0.00 0.00 0.00 5.19
114 115 4.935808 CGATATCTGTTTGGTATTAGGCCC 59.064 45.833 0.00 0.00 0.00 5.80
115 116 5.512404 CGATATCTGTTTGGTATTAGGCCCA 60.512 44.000 0.00 0.00 0.00 5.36
116 117 3.644966 TCTGTTTGGTATTAGGCCCAG 57.355 47.619 0.00 0.00 31.04 4.45
117 118 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
118 119 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
119 120 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
120 121 2.173996 GTTTGGTATTAGGCCCAGGCTA 59.826 50.000 8.89 0.00 39.70 3.93
121 122 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
122 123 2.266279 TGGTATTAGGCCCAGGCTATC 58.734 52.381 8.89 0.00 40.30 2.08
123 124 2.158004 TGGTATTAGGCCCAGGCTATCT 60.158 50.000 8.89 0.00 40.30 1.98
124 125 3.078458 TGGTATTAGGCCCAGGCTATCTA 59.922 47.826 8.89 0.00 40.30 1.98
125 126 3.451540 GGTATTAGGCCCAGGCTATCTAC 59.548 52.174 8.89 7.81 40.30 2.59
126 127 1.629043 TTAGGCCCAGGCTATCTACG 58.371 55.000 8.89 0.00 40.30 3.51
127 128 0.898789 TAGGCCCAGGCTATCTACGC 60.899 60.000 8.89 0.00 39.70 4.42
128 129 2.210711 GGCCCAGGCTATCTACGCT 61.211 63.158 8.89 0.00 41.60 5.07
129 130 1.290639 GCCCAGGCTATCTACGCTC 59.709 63.158 0.08 0.00 38.26 5.03
130 131 1.968310 CCCAGGCTATCTACGCTCC 59.032 63.158 0.00 0.00 0.00 4.70
131 132 0.540830 CCCAGGCTATCTACGCTCCT 60.541 60.000 0.00 0.00 0.00 3.69
132 133 1.333177 CCAGGCTATCTACGCTCCTT 58.667 55.000 0.00 0.00 0.00 3.36
133 134 1.689273 CCAGGCTATCTACGCTCCTTT 59.311 52.381 0.00 0.00 0.00 3.11
134 135 2.891580 CCAGGCTATCTACGCTCCTTTA 59.108 50.000 0.00 0.00 0.00 1.85
135 136 3.511934 CCAGGCTATCTACGCTCCTTTAT 59.488 47.826 0.00 0.00 0.00 1.40
136 137 4.381079 CCAGGCTATCTACGCTCCTTTATC 60.381 50.000 0.00 0.00 0.00 1.75
137 138 4.218635 CAGGCTATCTACGCTCCTTTATCA 59.781 45.833 0.00 0.00 0.00 2.15
138 139 4.833380 AGGCTATCTACGCTCCTTTATCAA 59.167 41.667 0.00 0.00 0.00 2.57
139 140 5.482175 AGGCTATCTACGCTCCTTTATCAAT 59.518 40.000 0.00 0.00 0.00 2.57
140 141 6.014156 AGGCTATCTACGCTCCTTTATCAATT 60.014 38.462 0.00 0.00 0.00 2.32
141 142 6.091441 GGCTATCTACGCTCCTTTATCAATTG 59.909 42.308 0.00 0.00 0.00 2.32
142 143 6.091441 GCTATCTACGCTCCTTTATCAATTGG 59.909 42.308 5.42 0.00 0.00 3.16
143 144 5.607939 TCTACGCTCCTTTATCAATTGGA 57.392 39.130 5.42 0.00 0.00 3.53
144 145 6.174720 TCTACGCTCCTTTATCAATTGGAT 57.825 37.500 5.42 0.89 40.14 3.41
145 146 7.297936 TCTACGCTCCTTTATCAATTGGATA 57.702 36.000 5.42 0.00 37.44 2.59
146 147 7.378966 TCTACGCTCCTTTATCAATTGGATAG 58.621 38.462 5.42 0.00 39.57 2.08
147 148 5.308825 ACGCTCCTTTATCAATTGGATAGG 58.691 41.667 5.42 8.24 39.57 2.57
148 149 5.163195 ACGCTCCTTTATCAATTGGATAGGT 60.163 40.000 5.42 0.00 39.57 3.08
149 150 5.180117 CGCTCCTTTATCAATTGGATAGGTG 59.820 44.000 5.42 9.66 39.57 4.00
150 151 6.064717 GCTCCTTTATCAATTGGATAGGTGT 58.935 40.000 5.42 0.00 39.57 4.16
151 152 7.224297 GCTCCTTTATCAATTGGATAGGTGTA 58.776 38.462 5.42 0.00 39.57 2.90
152 153 7.389053 GCTCCTTTATCAATTGGATAGGTGTAG 59.611 40.741 5.42 3.89 39.57 2.74
153 154 7.224297 TCCTTTATCAATTGGATAGGTGTAGC 58.776 38.462 5.42 0.00 39.57 3.58
154 155 6.147821 CCTTTATCAATTGGATAGGTGTAGCG 59.852 42.308 5.42 0.00 39.57 4.26
155 156 4.955811 ATCAATTGGATAGGTGTAGCGA 57.044 40.909 5.42 0.00 33.37 4.93
156 157 4.054780 TCAATTGGATAGGTGTAGCGAC 57.945 45.455 5.42 0.00 0.00 5.19
157 158 3.449377 TCAATTGGATAGGTGTAGCGACA 59.551 43.478 5.42 0.00 0.00 4.35
158 159 3.735237 ATTGGATAGGTGTAGCGACAG 57.265 47.619 0.00 0.00 35.82 3.51
159 160 2.139323 TGGATAGGTGTAGCGACAGT 57.861 50.000 0.00 0.00 35.82 3.55
160 161 2.453521 TGGATAGGTGTAGCGACAGTT 58.546 47.619 0.00 0.00 35.82 3.16
161 162 2.165641 TGGATAGGTGTAGCGACAGTTG 59.834 50.000 0.00 0.00 35.82 3.16
162 163 2.165845 GGATAGGTGTAGCGACAGTTGT 59.834 50.000 0.00 0.00 35.82 3.32
163 164 3.368116 GGATAGGTGTAGCGACAGTTGTT 60.368 47.826 0.00 0.00 35.82 2.83
164 165 1.865865 AGGTGTAGCGACAGTTGTTG 58.134 50.000 0.00 0.00 35.82 3.33
172 173 2.837337 CGACAGTTGTTGCTTAGACG 57.163 50.000 0.00 0.00 0.00 4.18
173 174 1.455786 CGACAGTTGTTGCTTAGACGG 59.544 52.381 0.00 0.00 0.00 4.79
174 175 2.480845 GACAGTTGTTGCTTAGACGGT 58.519 47.619 0.00 0.00 0.00 4.83
175 176 2.210116 ACAGTTGTTGCTTAGACGGTG 58.790 47.619 0.00 0.00 0.00 4.94
176 177 1.531149 CAGTTGTTGCTTAGACGGTGG 59.469 52.381 0.00 0.00 0.00 4.61
177 178 0.237498 GTTGTTGCTTAGACGGTGGC 59.763 55.000 0.00 0.00 0.00 5.01
178 179 0.107831 TTGTTGCTTAGACGGTGGCT 59.892 50.000 0.00 0.00 0.00 4.75
179 180 0.107831 TGTTGCTTAGACGGTGGCTT 59.892 50.000 0.00 0.00 0.00 4.35
180 181 1.235724 GTTGCTTAGACGGTGGCTTT 58.764 50.000 0.00 0.00 0.00 3.51
181 182 2.224329 TGTTGCTTAGACGGTGGCTTTA 60.224 45.455 0.00 0.00 0.00 1.85
182 183 2.380084 TGCTTAGACGGTGGCTTTAG 57.620 50.000 0.00 0.00 0.00 1.85
183 184 1.621814 TGCTTAGACGGTGGCTTTAGT 59.378 47.619 0.00 0.00 0.00 2.24
184 185 2.269172 GCTTAGACGGTGGCTTTAGTC 58.731 52.381 0.00 0.00 0.00 2.59
185 186 2.094130 GCTTAGACGGTGGCTTTAGTCT 60.094 50.000 9.53 9.53 44.90 3.24
186 187 3.616802 GCTTAGACGGTGGCTTTAGTCTT 60.617 47.826 9.79 0.00 42.99 3.01
187 188 4.381292 GCTTAGACGGTGGCTTTAGTCTTA 60.381 45.833 9.79 2.50 42.99 2.10
188 189 3.589495 AGACGGTGGCTTTAGTCTTAC 57.411 47.619 0.00 0.00 40.64 2.34
189 190 3.163467 AGACGGTGGCTTTAGTCTTACT 58.837 45.455 0.00 0.00 40.64 2.24
190 191 3.056749 AGACGGTGGCTTTAGTCTTACTG 60.057 47.826 0.00 0.00 40.64 2.74
191 192 2.631545 ACGGTGGCTTTAGTCTTACTGT 59.368 45.455 0.00 0.00 0.00 3.55
192 193 3.070590 ACGGTGGCTTTAGTCTTACTGTT 59.929 43.478 0.00 0.00 0.00 3.16
193 194 3.432252 CGGTGGCTTTAGTCTTACTGTTG 59.568 47.826 0.00 0.00 0.00 3.33
194 195 4.386711 GGTGGCTTTAGTCTTACTGTTGT 58.613 43.478 0.00 0.00 0.00 3.32
195 196 5.544650 GGTGGCTTTAGTCTTACTGTTGTA 58.455 41.667 0.00 0.00 0.00 2.41
196 197 6.171213 GGTGGCTTTAGTCTTACTGTTGTAT 58.829 40.000 0.00 0.00 0.00 2.29
197 198 6.092259 GGTGGCTTTAGTCTTACTGTTGTATG 59.908 42.308 0.00 0.00 0.00 2.39
198 199 6.872020 GTGGCTTTAGTCTTACTGTTGTATGA 59.128 38.462 0.00 0.00 32.61 2.15
199 200 6.872020 TGGCTTTAGTCTTACTGTTGTATGAC 59.128 38.462 11.70 11.70 45.97 3.06
213 214 9.436957 ACTGTTGTATGACTTTATAAGGTCTTG 57.563 33.333 23.46 10.41 34.01 3.02
214 215 9.436957 CTGTTGTATGACTTTATAAGGTCTTGT 57.563 33.333 23.46 14.25 34.01 3.16
215 216 9.214957 TGTTGTATGACTTTATAAGGTCTTGTG 57.785 33.333 23.46 0.00 34.01 3.33
216 217 9.431887 GTTGTATGACTTTATAAGGTCTTGTGA 57.568 33.333 23.46 7.91 34.01 3.58
217 218 9.653287 TTGTATGACTTTATAAGGTCTTGTGAG 57.347 33.333 23.46 2.10 34.01 3.51
218 219 9.031537 TGTATGACTTTATAAGGTCTTGTGAGA 57.968 33.333 23.46 6.69 34.01 3.27
219 220 9.871238 GTATGACTTTATAAGGTCTTGTGAGAA 57.129 33.333 23.46 6.07 32.66 2.87
237 238 9.743057 TTGTGAGAATAATTAATAAATTGGCCG 57.257 29.630 0.00 0.00 36.02 6.13
238 239 8.908903 TGTGAGAATAATTAATAAATTGGCCGT 58.091 29.630 0.00 0.00 36.02 5.68
242 243 9.855021 AGAATAATTAATAAATTGGCCGTATGC 57.145 29.630 0.00 0.00 36.02 3.14
243 244 9.632807 GAATAATTAATAAATTGGCCGTATGCA 57.367 29.630 0.00 0.00 37.85 3.96
245 246 9.801873 ATAATTAATAAATTGGCCGTATGCATC 57.198 29.630 0.19 0.00 37.85 3.91
246 247 3.829886 ATAAATTGGCCGTATGCATCG 57.170 42.857 0.19 7.03 43.89 3.84
247 248 1.388547 AAATTGGCCGTATGCATCGT 58.611 45.000 0.19 0.00 43.89 3.73
248 249 0.944386 AATTGGCCGTATGCATCGTC 59.056 50.000 0.19 0.00 43.89 4.20
249 250 0.884704 ATTGGCCGTATGCATCGTCC 60.885 55.000 0.19 7.07 43.89 4.79
250 251 2.108157 GGCCGTATGCATCGTCCA 59.892 61.111 0.19 0.00 43.89 4.02
251 252 1.956170 GGCCGTATGCATCGTCCAG 60.956 63.158 0.19 0.00 43.89 3.86
252 253 1.067416 GCCGTATGCATCGTCCAGA 59.933 57.895 0.19 0.00 40.77 3.86
253 254 0.319900 GCCGTATGCATCGTCCAGAT 60.320 55.000 0.19 0.00 41.01 2.90
261 262 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
262 263 2.037620 ATCGTCCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
263 264 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
264 265 3.473647 TCCAGATGCAGAGGCCGG 61.474 66.667 0.00 0.00 40.13 6.13
265 266 3.473647 CCAGATGCAGAGGCCGGA 61.474 66.667 5.05 0.00 40.13 5.14
266 267 2.108566 CAGATGCAGAGGCCGGAG 59.891 66.667 5.05 0.00 40.13 4.63
332 333 1.020462 TGGTGGGGATAGAGGGTGTA 58.980 55.000 0.00 0.00 0.00 2.90
337 338 1.038280 GGGATAGAGGGTGTACACGG 58.962 60.000 19.41 0.00 0.00 4.94
344 345 1.374252 GGGTGTACACGGCAGTCAG 60.374 63.158 19.41 0.00 0.00 3.51
381 382 3.981212 TGATCTGGAGTGGAGTGACATA 58.019 45.455 0.00 0.00 0.00 2.29
418 419 0.248907 GCGACGCTACAGGCTTATGA 60.249 55.000 13.73 0.00 39.13 2.15
453 454 4.080299 AGGTGGTGGATCAGGAGATAAAAC 60.080 45.833 0.00 0.00 33.72 2.43
464 465 8.082059 ATCAGGAGATAAAACCAGTCGGAGAC 62.082 46.154 0.00 0.00 45.69 3.36
483 484 0.739462 CGGTTAGACGGCAATGCTCA 60.739 55.000 4.82 0.00 0.00 4.26
518 519 4.202305 GGCTTGCCAGTCTAACTATGAGAT 60.202 45.833 6.79 0.00 0.00 2.75
552 553 8.235230 TGATTTGGGTAGATTACTCCTCTAGAT 58.765 37.037 0.00 0.00 0.00 1.98
558 559 7.929785 GGGTAGATTACTCCTCTAGATCGATAG 59.070 44.444 0.00 0.00 0.00 2.08
588 589 1.531149 CTGTAGCGTGGGTGAAACTTG 59.469 52.381 0.00 0.00 36.74 3.16
591 592 0.107410 AGCGTGGGTGAAACTTGTCA 60.107 50.000 0.00 0.00 36.74 3.58
592 593 0.307760 GCGTGGGTGAAACTTGTCAG 59.692 55.000 0.00 0.00 36.74 3.51
593 594 1.663695 CGTGGGTGAAACTTGTCAGT 58.336 50.000 0.00 0.00 36.74 3.41
594 595 1.330521 CGTGGGTGAAACTTGTCAGTG 59.669 52.381 0.00 0.00 36.74 3.66
595 596 2.365582 GTGGGTGAAACTTGTCAGTGT 58.634 47.619 0.00 0.00 36.74 3.55
598 599 2.614057 GGGTGAAACTTGTCAGTGTCAG 59.386 50.000 0.00 0.00 46.35 3.51
599 600 3.325230 GTGAAACTTGTCAGTGTCAGC 57.675 47.619 0.00 0.00 46.35 4.26
600 601 2.677836 GTGAAACTTGTCAGTGTCAGCA 59.322 45.455 0.00 0.00 46.35 4.41
601 602 3.313526 GTGAAACTTGTCAGTGTCAGCAT 59.686 43.478 0.00 0.00 46.35 3.79
602 603 3.947196 TGAAACTTGTCAGTGTCAGCATT 59.053 39.130 0.00 0.00 41.70 3.56
603 604 4.398988 TGAAACTTGTCAGTGTCAGCATTT 59.601 37.500 0.00 0.00 41.70 2.32
604 605 4.989279 AACTTGTCAGTGTCAGCATTTT 57.011 36.364 0.00 0.00 31.60 1.82
605 606 4.558538 ACTTGTCAGTGTCAGCATTTTC 57.441 40.909 0.00 0.00 0.00 2.29
606 607 3.947196 ACTTGTCAGTGTCAGCATTTTCA 59.053 39.130 0.00 0.00 0.00 2.69
607 608 4.581824 ACTTGTCAGTGTCAGCATTTTCAT 59.418 37.500 0.00 0.00 0.00 2.57
608 609 4.492791 TGTCAGTGTCAGCATTTTCATG 57.507 40.909 0.00 0.00 0.00 3.07
638 1646 9.223099 CTCAATATATTCATGTAGTGCAATGGA 57.777 33.333 0.00 0.00 0.00 3.41
639 1647 9.223099 TCAATATATTCATGTAGTGCAATGGAG 57.777 33.333 0.00 0.00 0.00 3.86
640 1648 8.456471 CAATATATTCATGTAGTGCAATGGAGG 58.544 37.037 0.00 0.00 0.00 4.30
644 1652 3.118629 TCATGTAGTGCAATGGAGGAGTC 60.119 47.826 0.00 0.00 0.00 3.36
652 1660 3.698263 ATGGAGGAGTCCCCGGTCC 62.698 68.421 5.25 6.91 43.15 4.46
675 1683 4.285292 CACTTGTCAGTGTCAGCATTTTC 58.715 43.478 0.00 0.00 44.96 2.29
686 1694 6.156256 AGTGTCAGCATTTTCTATAGGGTACA 59.844 38.462 0.00 0.00 0.00 2.90
687 1695 6.480320 GTGTCAGCATTTTCTATAGGGTACAG 59.520 42.308 0.00 0.00 0.00 2.74
688 1696 5.467063 GTCAGCATTTTCTATAGGGTACAGC 59.533 44.000 0.00 0.00 0.00 4.40
690 1698 5.468072 CAGCATTTTCTATAGGGTACAGCTG 59.532 44.000 13.48 13.48 38.61 4.24
692 1700 5.454755 GCATTTTCTATAGGGTACAGCTGGA 60.455 44.000 19.93 6.60 0.00 3.86
694 1702 6.420913 TTTTCTATAGGGTACAGCTGGATC 57.579 41.667 19.93 10.37 0.00 3.36
695 1703 4.741928 TCTATAGGGTACAGCTGGATCA 57.258 45.455 19.93 0.00 0.00 2.92
696 1704 5.276694 TCTATAGGGTACAGCTGGATCAT 57.723 43.478 19.93 10.79 0.00 2.45
697 1705 5.655394 TCTATAGGGTACAGCTGGATCATT 58.345 41.667 19.93 4.57 0.00 2.57
698 1706 6.084738 TCTATAGGGTACAGCTGGATCATTT 58.915 40.000 19.93 5.21 0.00 2.32
699 1707 5.653255 ATAGGGTACAGCTGGATCATTTT 57.347 39.130 19.93 0.00 0.00 1.82
700 1708 3.891049 AGGGTACAGCTGGATCATTTTC 58.109 45.455 19.93 0.00 0.00 2.29
703 1711 5.370880 AGGGTACAGCTGGATCATTTTCTAT 59.629 40.000 19.93 0.00 0.00 1.98
706 1714 7.389053 GGGTACAGCTGGATCATTTTCTATAAG 59.611 40.741 19.93 0.00 0.00 1.73
707 1715 8.150945 GGTACAGCTGGATCATTTTCTATAAGA 58.849 37.037 19.93 0.00 0.00 2.10
710 1718 7.718753 ACAGCTGGATCATTTTCTATAAGAAGG 59.281 37.037 19.93 0.00 35.37 3.46
711 1719 7.935755 CAGCTGGATCATTTTCTATAAGAAGGA 59.064 37.037 5.57 0.00 35.37 3.36
712 1720 8.156165 AGCTGGATCATTTTCTATAAGAAGGAG 58.844 37.037 0.00 0.00 35.37 3.69
713 1721 7.094848 GCTGGATCATTTTCTATAAGAAGGAGC 60.095 40.741 0.00 0.00 35.37 4.70
714 1722 7.805163 TGGATCATTTTCTATAAGAAGGAGCA 58.195 34.615 0.00 0.00 35.37 4.26
716 1724 8.563732 GGATCATTTTCTATAAGAAGGAGCAAC 58.436 37.037 0.00 0.00 35.37 4.17
717 1725 7.539712 TCATTTTCTATAAGAAGGAGCAACG 57.460 36.000 0.00 0.00 35.37 4.10
719 1727 3.079960 TCTATAAGAAGGAGCAACGCG 57.920 47.619 3.53 3.53 0.00 6.01
722 2565 7.117199 TTCTATAAGAAGGAGCAACGCGAGT 62.117 44.000 15.93 0.00 36.23 4.18
741 2584 2.158959 CCGAAGCGGTAGAAGCACG 61.159 63.158 0.00 0.00 42.73 5.34
742 2585 2.158959 CGAAGCGGTAGAAGCACGG 61.159 63.158 0.00 0.00 37.01 4.94
743 2586 1.214589 GAAGCGGTAGAAGCACGGA 59.785 57.895 0.00 0.00 37.01 4.69
744 2587 0.802607 GAAGCGGTAGAAGCACGGAG 60.803 60.000 0.00 0.00 37.01 4.63
745 2588 1.248785 AAGCGGTAGAAGCACGGAGA 61.249 55.000 0.00 0.00 37.01 3.71
746 2589 1.516603 GCGGTAGAAGCACGGAGAC 60.517 63.158 0.00 0.00 34.19 3.36
846 2690 2.969238 CGCATCTCGCCATCACCC 60.969 66.667 0.00 0.00 37.30 4.61
848 2692 1.228063 GCATCTCGCCATCACCCAT 60.228 57.895 0.00 0.00 32.94 4.00
849 2693 1.233285 GCATCTCGCCATCACCCATC 61.233 60.000 0.00 0.00 32.94 3.51
850 2694 0.107268 CATCTCGCCATCACCCATCA 59.893 55.000 0.00 0.00 0.00 3.07
851 2695 0.395686 ATCTCGCCATCACCCATCAG 59.604 55.000 0.00 0.00 0.00 2.90
852 2696 0.687427 TCTCGCCATCACCCATCAGA 60.687 55.000 0.00 0.00 0.00 3.27
853 2697 0.249784 CTCGCCATCACCCATCAGAG 60.250 60.000 0.00 0.00 0.00 3.35
854 2698 0.687427 TCGCCATCACCCATCAGAGA 60.687 55.000 0.00 0.00 0.00 3.10
920 2780 3.329929 AAATAATATCTCCGTCCGCCC 57.670 47.619 0.00 0.00 0.00 6.13
1216 3281 4.767892 AGGAGGCCAAGGAGGGGG 62.768 72.222 5.01 0.00 38.09 5.40
1594 3662 3.768185 TTCGCCTACTCGATGCCGC 62.768 63.158 0.00 0.00 38.37 6.53
2094 4168 2.512515 GACGAGGCTGCATCCACC 60.513 66.667 9.69 0.00 0.00 4.61
2400 4474 0.108138 AGTACACCGATGAGCTTGCC 60.108 55.000 0.00 0.00 0.00 4.52
2445 4519 0.677731 CCAAATCGAGGAGCCAGCAA 60.678 55.000 0.00 0.00 0.00 3.91
2583 4657 0.604578 ATGGCAGTGGCAATGTCAAC 59.395 50.000 26.53 9.84 42.43 3.18
2772 4846 3.811514 CGACATCTATAGCTACGGTGTG 58.188 50.000 13.76 4.89 0.00 3.82
2925 4999 0.953960 ACCCGGCGTTGAAAGATGTC 60.954 55.000 6.01 0.00 0.00 3.06
2940 5014 1.566298 ATGTCAACCAGGAGGAGGCC 61.566 60.000 0.00 0.00 38.69 5.19
3096 5170 1.459450 CCGGTGGGTTCCATTACAAG 58.541 55.000 0.00 0.00 35.28 3.16
3293 5369 5.143376 AGAAAAAGGTGATGGCAAATCTG 57.857 39.130 0.00 0.00 0.00 2.90
3389 5467 7.973048 TTGGTACTAAATAGATGACCTGAGT 57.027 36.000 0.00 0.00 0.00 3.41
3435 5513 3.605664 GCCTTTTGTGCCGGTGCT 61.606 61.111 1.90 0.00 38.71 4.40
3478 5561 6.999272 TGGGTTAGAATTGTAGTGCTTTACAA 59.001 34.615 13.45 13.45 44.87 2.41
3600 5684 3.319137 TCGTATGTGCTTTTCTGCTCT 57.681 42.857 0.00 0.00 0.00 4.09
3730 6853 4.228210 TGAAAGGGCTTCATTAGACTGGAT 59.772 41.667 0.00 0.00 39.20 3.41
3735 6858 3.549794 GCTTCATTAGACTGGATGCCTT 58.450 45.455 0.00 0.00 0.00 4.35
3788 6911 3.457234 TGACACACTGAACTGACATGTC 58.543 45.455 19.27 19.27 36.40 3.06
3835 6979 6.858993 GGTAATCTTAGAGTAGAATCTGTGCG 59.141 42.308 0.00 0.00 0.00 5.34
3844 6988 0.730494 GAATCTGTGCGCTGTTTGGC 60.730 55.000 9.73 0.00 0.00 4.52
3873 7017 4.079253 GGTAGGAAGCCTGTCAAAATTGA 58.921 43.478 0.00 0.00 34.61 2.57
3894 7040 1.475034 GGCGATGGGAAGTCTGCATTA 60.475 52.381 0.00 0.00 0.00 1.90
3937 7084 7.169140 CGTACTTTTTGCTTAAGAAAATGGCTT 59.831 33.333 9.51 0.00 0.00 4.35
3974 7124 0.755686 ACTGATAGCTAGCCACCTGC 59.244 55.000 12.13 0.00 41.71 4.85
4028 7182 5.506730 AAGCTTAGCCTCCTTCTTTAAGT 57.493 39.130 0.00 0.00 0.00 2.24
4072 7226 8.127150 TCACCCTATGATATAAGTCATGTGAG 57.873 38.462 0.00 0.00 39.13 3.51
4089 7243 6.611236 TCATGTGAGGATAGTACTGAAATGGA 59.389 38.462 5.39 0.00 0.00 3.41
4090 7244 6.222038 TGTGAGGATAGTACTGAAATGGAC 57.778 41.667 5.39 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.094659 CGGCGCACTCCACAACTAG 61.095 63.158 10.83 0.00 0.00 2.57
1 2 2.048597 CGGCGCACTCCACAACTA 60.049 61.111 10.83 0.00 0.00 2.24
2 3 4.988598 CCGGCGCACTCCACAACT 62.989 66.667 10.83 0.00 0.00 3.16
3 4 4.980805 TCCGGCGCACTCCACAAC 62.981 66.667 10.83 0.00 0.00 3.32
8 9 3.291101 TAACAGTCCGGCGCACTCC 62.291 63.158 10.83 0.00 0.00 3.85
9 10 1.805945 CTAACAGTCCGGCGCACTC 60.806 63.158 10.83 0.00 0.00 3.51
10 11 2.261671 CTAACAGTCCGGCGCACT 59.738 61.111 10.83 0.00 0.00 4.40
11 12 2.813908 CCTAACAGTCCGGCGCAC 60.814 66.667 10.83 0.00 0.00 5.34
12 13 3.307906 ACCTAACAGTCCGGCGCA 61.308 61.111 10.83 0.00 0.00 6.09
13 14 2.813908 CACCTAACAGTCCGGCGC 60.814 66.667 0.00 0.00 0.00 6.53
14 15 2.813908 GCACCTAACAGTCCGGCG 60.814 66.667 0.00 0.00 0.00 6.46
15 16 2.436115 GGCACCTAACAGTCCGGC 60.436 66.667 0.00 0.00 0.00 6.13
33 34 4.910585 GACGCCTGCCGGGTATGG 62.911 72.222 2.18 0.00 42.52 2.74
34 35 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
44 45 3.637273 GTCCCAACCAGGACGCCT 61.637 66.667 0.00 0.00 46.57 5.52
60 61 5.342866 ACCTAAACATCTAAGACCTGAGGT 58.657 41.667 2.41 2.41 39.44 3.85
61 62 5.941555 ACCTAAACATCTAAGACCTGAGG 57.058 43.478 0.00 0.00 0.00 3.86
62 63 6.595716 CCAAACCTAAACATCTAAGACCTGAG 59.404 42.308 0.00 0.00 0.00 3.35
63 64 6.472887 CCAAACCTAAACATCTAAGACCTGA 58.527 40.000 0.00 0.00 0.00 3.86
64 65 5.123979 GCCAAACCTAAACATCTAAGACCTG 59.876 44.000 0.00 0.00 0.00 4.00
65 66 5.014228 AGCCAAACCTAAACATCTAAGACCT 59.986 40.000 0.00 0.00 0.00 3.85
66 67 5.123979 CAGCCAAACCTAAACATCTAAGACC 59.876 44.000 0.00 0.00 0.00 3.85
67 68 5.392057 GCAGCCAAACCTAAACATCTAAGAC 60.392 44.000 0.00 0.00 0.00 3.01
68 69 4.700213 GCAGCCAAACCTAAACATCTAAGA 59.300 41.667 0.00 0.00 0.00 2.10
69 70 4.437390 CGCAGCCAAACCTAAACATCTAAG 60.437 45.833 0.00 0.00 0.00 2.18
70 71 3.438781 CGCAGCCAAACCTAAACATCTAA 59.561 43.478 0.00 0.00 0.00 2.10
71 72 3.006940 CGCAGCCAAACCTAAACATCTA 58.993 45.455 0.00 0.00 0.00 1.98
72 73 1.812571 CGCAGCCAAACCTAAACATCT 59.187 47.619 0.00 0.00 0.00 2.90
73 74 1.810151 TCGCAGCCAAACCTAAACATC 59.190 47.619 0.00 0.00 0.00 3.06
74 75 1.904287 TCGCAGCCAAACCTAAACAT 58.096 45.000 0.00 0.00 0.00 2.71
75 76 1.904287 ATCGCAGCCAAACCTAAACA 58.096 45.000 0.00 0.00 0.00 2.83
76 77 3.877508 AGATATCGCAGCCAAACCTAAAC 59.122 43.478 0.00 0.00 0.00 2.01
77 78 3.876914 CAGATATCGCAGCCAAACCTAAA 59.123 43.478 0.00 0.00 0.00 1.85
78 79 3.118408 ACAGATATCGCAGCCAAACCTAA 60.118 43.478 0.00 0.00 0.00 2.69
79 80 2.434336 ACAGATATCGCAGCCAAACCTA 59.566 45.455 0.00 0.00 0.00 3.08
80 81 1.210478 ACAGATATCGCAGCCAAACCT 59.790 47.619 0.00 0.00 0.00 3.50
81 82 1.668419 ACAGATATCGCAGCCAAACC 58.332 50.000 0.00 0.00 0.00 3.27
82 83 3.429085 CAAACAGATATCGCAGCCAAAC 58.571 45.455 0.00 0.00 0.00 2.93
83 84 2.423185 CCAAACAGATATCGCAGCCAAA 59.577 45.455 0.00 0.00 0.00 3.28
84 85 2.016318 CCAAACAGATATCGCAGCCAA 58.984 47.619 0.00 0.00 0.00 4.52
85 86 1.065491 ACCAAACAGATATCGCAGCCA 60.065 47.619 0.00 0.00 0.00 4.75
86 87 1.668419 ACCAAACAGATATCGCAGCC 58.332 50.000 0.00 0.00 0.00 4.85
87 88 5.120830 CCTAATACCAAACAGATATCGCAGC 59.879 44.000 0.00 0.00 0.00 5.25
88 89 5.120830 GCCTAATACCAAACAGATATCGCAG 59.879 44.000 0.00 0.00 0.00 5.18
89 90 4.994852 GCCTAATACCAAACAGATATCGCA 59.005 41.667 0.00 0.00 0.00 5.10
90 91 4.392138 GGCCTAATACCAAACAGATATCGC 59.608 45.833 0.00 0.00 0.00 4.58
91 92 4.935808 GGGCCTAATACCAAACAGATATCG 59.064 45.833 0.84 0.00 0.00 2.92
92 93 5.876357 TGGGCCTAATACCAAACAGATATC 58.124 41.667 4.53 0.00 32.89 1.63
93 94 5.222130 CCTGGGCCTAATACCAAACAGATAT 60.222 44.000 4.53 0.00 36.09 1.63
94 95 4.104102 CCTGGGCCTAATACCAAACAGATA 59.896 45.833 4.53 0.00 36.09 1.98
95 96 3.117512 CCTGGGCCTAATACCAAACAGAT 60.118 47.826 4.53 0.00 36.09 2.90
96 97 2.241176 CCTGGGCCTAATACCAAACAGA 59.759 50.000 4.53 0.00 36.09 3.41
97 98 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
98 99 1.341581 GCCTGGGCCTAATACCAAACA 60.342 52.381 4.53 0.00 36.09 2.83
99 100 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
100 101 1.304891 AGCCTGGGCCTAATACCAAA 58.695 50.000 4.53 0.00 43.17 3.28
101 102 2.199927 TAGCCTGGGCCTAATACCAA 57.800 50.000 4.53 0.00 43.17 3.67
102 103 2.158004 AGATAGCCTGGGCCTAATACCA 60.158 50.000 4.53 0.00 43.17 3.25
103 104 2.552367 AGATAGCCTGGGCCTAATACC 58.448 52.381 4.53 0.00 43.17 2.73
104 105 3.130693 CGTAGATAGCCTGGGCCTAATAC 59.869 52.174 4.53 6.34 43.17 1.89
105 106 3.362706 CGTAGATAGCCTGGGCCTAATA 58.637 50.000 4.53 0.00 43.17 0.98
106 107 2.180276 CGTAGATAGCCTGGGCCTAAT 58.820 52.381 4.53 0.00 43.17 1.73
107 108 1.629043 CGTAGATAGCCTGGGCCTAA 58.371 55.000 4.53 0.00 43.17 2.69
108 109 0.898789 GCGTAGATAGCCTGGGCCTA 60.899 60.000 4.53 0.00 43.17 3.93
109 110 2.210711 GCGTAGATAGCCTGGGCCT 61.211 63.158 4.53 1.27 43.17 5.19
110 111 2.161078 GAGCGTAGATAGCCTGGGCC 62.161 65.000 8.11 0.00 43.17 5.80
111 112 1.290639 GAGCGTAGATAGCCTGGGC 59.709 63.158 3.00 3.00 42.33 5.36
112 113 0.540830 AGGAGCGTAGATAGCCTGGG 60.541 60.000 0.00 0.00 34.64 4.45
113 114 1.333177 AAGGAGCGTAGATAGCCTGG 58.667 55.000 0.00 0.00 34.64 4.45
114 115 4.218635 TGATAAAGGAGCGTAGATAGCCTG 59.781 45.833 0.00 0.00 34.64 4.85
115 116 4.408276 TGATAAAGGAGCGTAGATAGCCT 58.592 43.478 0.00 0.00 34.64 4.58
116 117 4.785511 TGATAAAGGAGCGTAGATAGCC 57.214 45.455 0.00 0.00 34.64 3.93
117 118 6.091441 CCAATTGATAAAGGAGCGTAGATAGC 59.909 42.308 7.12 0.00 0.00 2.97
118 119 7.378966 TCCAATTGATAAAGGAGCGTAGATAG 58.621 38.462 7.12 0.00 0.00 2.08
119 120 7.297936 TCCAATTGATAAAGGAGCGTAGATA 57.702 36.000 7.12 0.00 0.00 1.98
120 121 6.174720 TCCAATTGATAAAGGAGCGTAGAT 57.825 37.500 7.12 0.00 0.00 1.98
121 122 5.607939 TCCAATTGATAAAGGAGCGTAGA 57.392 39.130 7.12 0.00 0.00 2.59
122 123 6.591834 CCTATCCAATTGATAAAGGAGCGTAG 59.408 42.308 7.12 0.00 35.53 3.51
123 124 6.042781 ACCTATCCAATTGATAAAGGAGCGTA 59.957 38.462 7.12 0.00 35.53 4.42
124 125 5.163195 ACCTATCCAATTGATAAAGGAGCGT 60.163 40.000 7.12 0.00 35.53 5.07
125 126 5.180117 CACCTATCCAATTGATAAAGGAGCG 59.820 44.000 7.12 0.30 35.53 5.03
126 127 6.064717 ACACCTATCCAATTGATAAAGGAGC 58.935 40.000 7.12 0.00 35.53 4.70
127 128 7.389053 GCTACACCTATCCAATTGATAAAGGAG 59.611 40.741 7.12 9.02 35.53 3.69
128 129 7.224297 GCTACACCTATCCAATTGATAAAGGA 58.776 38.462 7.12 0.00 35.53 3.36
129 130 6.147821 CGCTACACCTATCCAATTGATAAAGG 59.852 42.308 7.12 10.29 35.53 3.11
130 131 6.929049 TCGCTACACCTATCCAATTGATAAAG 59.071 38.462 7.12 0.00 35.53 1.85
131 132 6.704493 GTCGCTACACCTATCCAATTGATAAA 59.296 38.462 7.12 0.00 35.53 1.40
132 133 6.183360 TGTCGCTACACCTATCCAATTGATAA 60.183 38.462 7.12 0.00 35.53 1.75
133 134 5.303333 TGTCGCTACACCTATCCAATTGATA 59.697 40.000 7.12 2.58 34.76 2.15
134 135 4.100963 TGTCGCTACACCTATCCAATTGAT 59.899 41.667 7.12 1.44 37.49 2.57
135 136 3.449377 TGTCGCTACACCTATCCAATTGA 59.551 43.478 7.12 0.00 0.00 2.57
136 137 3.792401 TGTCGCTACACCTATCCAATTG 58.208 45.455 0.00 0.00 0.00 2.32
137 138 3.451178 ACTGTCGCTACACCTATCCAATT 59.549 43.478 0.00 0.00 0.00 2.32
138 139 3.031736 ACTGTCGCTACACCTATCCAAT 58.968 45.455 0.00 0.00 0.00 3.16
139 140 2.453521 ACTGTCGCTACACCTATCCAA 58.546 47.619 0.00 0.00 0.00 3.53
140 141 2.139323 ACTGTCGCTACACCTATCCA 57.861 50.000 0.00 0.00 0.00 3.41
141 142 2.165845 ACAACTGTCGCTACACCTATCC 59.834 50.000 0.00 0.00 0.00 2.59
142 143 3.505464 ACAACTGTCGCTACACCTATC 57.495 47.619 0.00 0.00 0.00 2.08
143 144 3.585862 CAACAACTGTCGCTACACCTAT 58.414 45.455 0.00 0.00 0.00 2.57
144 145 2.864882 GCAACAACTGTCGCTACACCTA 60.865 50.000 0.00 0.00 0.00 3.08
145 146 1.865865 CAACAACTGTCGCTACACCT 58.134 50.000 0.00 0.00 0.00 4.00
146 147 0.234884 GCAACAACTGTCGCTACACC 59.765 55.000 0.00 0.00 0.00 4.16
147 148 1.217882 AGCAACAACTGTCGCTACAC 58.782 50.000 0.00 0.00 31.60 2.90
148 149 1.948104 AAGCAACAACTGTCGCTACA 58.052 45.000 0.00 0.00 33.45 2.74
149 150 3.121445 GTCTAAGCAACAACTGTCGCTAC 59.879 47.826 0.00 0.00 33.45 3.58
150 151 3.314553 GTCTAAGCAACAACTGTCGCTA 58.685 45.455 0.00 0.00 33.45 4.26
151 152 2.135933 GTCTAAGCAACAACTGTCGCT 58.864 47.619 0.00 0.00 35.90 4.93
152 153 1.136611 CGTCTAAGCAACAACTGTCGC 60.137 52.381 0.00 0.00 0.00 5.19
153 154 1.455786 CCGTCTAAGCAACAACTGTCG 59.544 52.381 0.00 0.00 0.00 4.35
154 155 2.221055 CACCGTCTAAGCAACAACTGTC 59.779 50.000 0.00 0.00 0.00 3.51
155 156 2.210116 CACCGTCTAAGCAACAACTGT 58.790 47.619 0.00 0.00 0.00 3.55
156 157 1.531149 CCACCGTCTAAGCAACAACTG 59.469 52.381 0.00 0.00 0.00 3.16
157 158 1.878953 CCACCGTCTAAGCAACAACT 58.121 50.000 0.00 0.00 0.00 3.16
158 159 0.237498 GCCACCGTCTAAGCAACAAC 59.763 55.000 0.00 0.00 0.00 3.32
159 160 0.107831 AGCCACCGTCTAAGCAACAA 59.892 50.000 0.00 0.00 0.00 2.83
160 161 0.107831 AAGCCACCGTCTAAGCAACA 59.892 50.000 0.00 0.00 0.00 3.33
161 162 1.235724 AAAGCCACCGTCTAAGCAAC 58.764 50.000 0.00 0.00 0.00 4.17
162 163 2.038033 ACTAAAGCCACCGTCTAAGCAA 59.962 45.455 0.00 0.00 0.00 3.91
163 164 1.621814 ACTAAAGCCACCGTCTAAGCA 59.378 47.619 0.00 0.00 0.00 3.91
164 165 2.094130 AGACTAAAGCCACCGTCTAAGC 60.094 50.000 0.00 0.00 35.15 3.09
165 166 3.870633 AGACTAAAGCCACCGTCTAAG 57.129 47.619 0.00 0.00 35.15 2.18
166 167 4.768968 AGTAAGACTAAAGCCACCGTCTAA 59.231 41.667 0.00 0.00 35.82 2.10
167 168 4.157289 CAGTAAGACTAAAGCCACCGTCTA 59.843 45.833 0.00 0.00 35.82 2.59
168 169 3.056749 CAGTAAGACTAAAGCCACCGTCT 60.057 47.826 0.00 0.00 38.29 4.18
169 170 3.251571 CAGTAAGACTAAAGCCACCGTC 58.748 50.000 0.00 0.00 0.00 4.79
170 171 2.631545 ACAGTAAGACTAAAGCCACCGT 59.368 45.455 0.00 0.00 0.00 4.83
171 172 3.314541 ACAGTAAGACTAAAGCCACCG 57.685 47.619 0.00 0.00 0.00 4.94
172 173 4.386711 ACAACAGTAAGACTAAAGCCACC 58.613 43.478 0.00 0.00 0.00 4.61
173 174 6.872020 TCATACAACAGTAAGACTAAAGCCAC 59.128 38.462 0.00 0.00 0.00 5.01
174 175 6.872020 GTCATACAACAGTAAGACTAAAGCCA 59.128 38.462 4.35 0.00 34.99 4.75
175 176 7.097834 AGTCATACAACAGTAAGACTAAAGCC 58.902 38.462 10.67 0.00 42.02 4.35
176 177 8.535690 AAGTCATACAACAGTAAGACTAAAGC 57.464 34.615 12.21 0.00 42.62 3.51
187 188 9.436957 CAAGACCTTATAAAGTCATACAACAGT 57.563 33.333 15.04 0.00 0.00 3.55
188 189 9.436957 ACAAGACCTTATAAAGTCATACAACAG 57.563 33.333 15.04 0.00 0.00 3.16
189 190 9.214957 CACAAGACCTTATAAAGTCATACAACA 57.785 33.333 15.04 0.00 0.00 3.33
190 191 9.431887 TCACAAGACCTTATAAAGTCATACAAC 57.568 33.333 15.04 0.00 0.00 3.32
191 192 9.653287 CTCACAAGACCTTATAAAGTCATACAA 57.347 33.333 15.04 0.00 0.00 2.41
192 193 9.031537 TCTCACAAGACCTTATAAAGTCATACA 57.968 33.333 15.04 0.00 0.00 2.29
193 194 9.871238 TTCTCACAAGACCTTATAAAGTCATAC 57.129 33.333 15.04 0.00 0.00 2.39
211 212 9.743057 CGGCCAATTTATTAATTATTCTCACAA 57.257 29.630 2.24 0.00 32.75 3.33
212 213 8.908903 ACGGCCAATTTATTAATTATTCTCACA 58.091 29.630 2.24 0.00 32.75 3.58
216 217 9.855021 GCATACGGCCAATTTATTAATTATTCT 57.145 29.630 2.24 0.00 36.11 2.40
217 218 9.632807 TGCATACGGCCAATTTATTAATTATTC 57.367 29.630 2.24 0.00 43.89 1.75
219 220 9.801873 GATGCATACGGCCAATTTATTAATTAT 57.198 29.630 2.24 0.00 43.89 1.28
220 221 7.965655 CGATGCATACGGCCAATTTATTAATTA 59.034 33.333 2.24 0.00 43.89 1.40
221 222 6.806249 CGATGCATACGGCCAATTTATTAATT 59.194 34.615 2.24 0.00 43.89 1.40
222 223 6.072175 ACGATGCATACGGCCAATTTATTAAT 60.072 34.615 18.34 0.00 43.89 1.40
223 224 5.239744 ACGATGCATACGGCCAATTTATTAA 59.760 36.000 18.34 0.00 43.89 1.40
224 225 4.757657 ACGATGCATACGGCCAATTTATTA 59.242 37.500 18.34 0.00 43.89 0.98
225 226 3.568007 ACGATGCATACGGCCAATTTATT 59.432 39.130 18.34 0.00 43.89 1.40
226 227 3.146066 ACGATGCATACGGCCAATTTAT 58.854 40.909 18.34 0.00 43.89 1.40
227 228 2.546368 GACGATGCATACGGCCAATTTA 59.454 45.455 18.34 0.00 43.89 1.40
228 229 1.333619 GACGATGCATACGGCCAATTT 59.666 47.619 18.34 1.14 43.89 1.82
229 230 0.944386 GACGATGCATACGGCCAATT 59.056 50.000 18.34 0.00 43.89 2.32
230 231 2.616969 GACGATGCATACGGCCAAT 58.383 52.632 18.34 0.00 43.89 3.16
231 232 4.118480 GACGATGCATACGGCCAA 57.882 55.556 18.34 0.00 43.89 4.52
234 235 0.319900 ATCTGGACGATGCATACGGC 60.320 55.000 18.34 16.22 45.13 5.68
235 236 1.422388 CATCTGGACGATGCATACGG 58.578 55.000 18.34 6.85 42.75 4.02
243 244 1.445095 GCCTCTGCATCTGGACGAT 59.555 57.895 0.00 0.00 37.47 3.73
244 245 2.725312 GGCCTCTGCATCTGGACGA 61.725 63.158 0.00 0.00 40.13 4.20
245 246 2.202987 GGCCTCTGCATCTGGACG 60.203 66.667 0.00 0.00 40.13 4.79
246 247 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
247 248 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
248 249 3.457625 CTCCGGCCTCTGCATCTGG 62.458 68.421 0.00 0.00 40.13 3.86
249 250 2.108566 CTCCGGCCTCTGCATCTG 59.891 66.667 0.00 0.00 40.13 2.90
250 251 3.160047 CCTCCGGCCTCTGCATCT 61.160 66.667 0.00 0.00 40.13 2.90
251 252 3.453070 GACCTCCGGCCTCTGCATC 62.453 68.421 0.00 0.00 40.13 3.91
252 253 3.474570 GACCTCCGGCCTCTGCAT 61.475 66.667 0.00 0.00 40.13 3.96
254 255 2.932130 GAATGACCTCCGGCCTCTGC 62.932 65.000 0.00 0.00 0.00 4.26
255 256 1.144936 GAATGACCTCCGGCCTCTG 59.855 63.158 0.00 0.00 0.00 3.35
256 257 0.618968 AAGAATGACCTCCGGCCTCT 60.619 55.000 0.00 0.00 0.00 3.69
257 258 0.179070 GAAGAATGACCTCCGGCCTC 60.179 60.000 0.00 0.00 0.00 4.70
258 259 0.618968 AGAAGAATGACCTCCGGCCT 60.619 55.000 0.00 0.00 0.00 5.19
259 260 0.253327 AAGAAGAATGACCTCCGGCC 59.747 55.000 0.00 0.00 0.00 6.13
260 261 2.115343 AAAGAAGAATGACCTCCGGC 57.885 50.000 0.00 0.00 0.00 6.13
261 262 6.569179 TTTTTAAAGAAGAATGACCTCCGG 57.431 37.500 0.00 0.00 0.00 5.14
285 286 2.929398 CAAAACTGGCGCAACTCTTTTT 59.071 40.909 10.83 2.71 0.00 1.94
286 287 2.539476 CAAAACTGGCGCAACTCTTTT 58.461 42.857 10.83 2.23 0.00 2.27
287 288 1.202405 CCAAAACTGGCGCAACTCTTT 60.202 47.619 10.83 0.00 0.00 2.52
288 289 0.385390 CCAAAACTGGCGCAACTCTT 59.615 50.000 10.83 0.00 0.00 2.85
289 290 0.751643 ACCAAAACTGGCGCAACTCT 60.752 50.000 10.83 0.00 0.00 3.24
290 291 0.594796 CACCAAAACTGGCGCAACTC 60.595 55.000 10.83 0.00 0.00 3.01
291 292 1.437160 CACCAAAACTGGCGCAACT 59.563 52.632 10.83 0.00 0.00 3.16
292 293 1.591327 CCACCAAAACTGGCGCAAC 60.591 57.895 10.83 0.00 0.00 4.17
293 294 2.055042 ACCACCAAAACTGGCGCAA 61.055 52.632 10.83 0.00 31.13 4.85
294 295 2.441164 ACCACCAAAACTGGCGCA 60.441 55.556 10.83 0.00 31.13 6.09
295 296 2.027460 CACCACCAAAACTGGCGC 59.973 61.111 0.00 0.00 31.13 6.53
296 297 1.065600 CACACCACCAAAACTGGCG 59.934 57.895 0.00 0.00 31.13 5.69
297 298 1.326951 ACCACACCACCAAAACTGGC 61.327 55.000 0.00 0.00 31.13 4.85
298 299 0.459489 CACCACACCACCAAAACTGG 59.541 55.000 0.00 0.00 34.62 4.00
299 300 0.459489 CCACCACACCACCAAAACTG 59.541 55.000 0.00 0.00 0.00 3.16
300 301 0.686112 CCCACCACACCACCAAAACT 60.686 55.000 0.00 0.00 0.00 2.66
301 302 1.681486 CCCCACCACACCACCAAAAC 61.681 60.000 0.00 0.00 0.00 2.43
332 333 2.715532 AATCACGCTGACTGCCGTGT 62.716 55.000 19.96 10.85 42.39 4.49
337 338 1.291877 AACGGAATCACGCTGACTGC 61.292 55.000 0.00 0.00 37.37 4.40
344 345 1.327764 GATCAAGGAACGGAATCACGC 59.672 52.381 0.00 0.00 37.37 5.34
418 419 4.380843 TCCACCACCTTAACAATCATGT 57.619 40.909 0.00 0.00 43.14 3.21
453 454 0.450983 GTCTAACCGTCTCCGACTGG 59.549 60.000 0.00 0.00 35.63 4.00
464 465 0.739462 TGAGCATTGCCGTCTAACCG 60.739 55.000 4.70 0.00 0.00 4.44
470 471 0.310543 TGTTGTTGAGCATTGCCGTC 59.689 50.000 4.70 0.00 0.00 4.79
483 484 3.050339 CAAGCCCCGCATGTTGTT 58.950 55.556 0.00 0.00 0.00 2.83
518 519 8.877864 AGTAATCTACCCAAATCAATGAACAA 57.122 30.769 0.00 0.00 0.00 2.83
552 553 5.530171 ACGCTACAGATTAAACCTCTATCGA 59.470 40.000 0.00 0.00 0.00 3.59
558 559 3.195661 CCCACGCTACAGATTAAACCTC 58.804 50.000 0.00 0.00 0.00 3.85
560 561 2.676342 CACCCACGCTACAGATTAAACC 59.324 50.000 0.00 0.00 0.00 3.27
562 563 3.965379 TCACCCACGCTACAGATTAAA 57.035 42.857 0.00 0.00 0.00 1.52
567 568 1.045407 AGTTTCACCCACGCTACAGA 58.955 50.000 0.00 0.00 0.00 3.41
568 569 1.531149 CAAGTTTCACCCACGCTACAG 59.469 52.381 0.00 0.00 0.00 2.74
570 571 1.529865 GACAAGTTTCACCCACGCTAC 59.470 52.381 0.00 0.00 0.00 3.58
571 572 1.139256 TGACAAGTTTCACCCACGCTA 59.861 47.619 0.00 0.00 0.00 4.26
572 573 0.107410 TGACAAGTTTCACCCACGCT 60.107 50.000 0.00 0.00 0.00 5.07
588 589 4.214971 AGACATGAAAATGCTGACACTGAC 59.785 41.667 0.00 0.00 0.00 3.51
591 592 4.649692 AGAGACATGAAAATGCTGACACT 58.350 39.130 0.00 0.00 0.00 3.55
592 593 4.453478 TGAGAGACATGAAAATGCTGACAC 59.547 41.667 0.00 0.00 0.00 3.67
593 594 4.644498 TGAGAGACATGAAAATGCTGACA 58.356 39.130 0.00 0.00 0.00 3.58
594 595 5.618056 TTGAGAGACATGAAAATGCTGAC 57.382 39.130 0.00 0.00 0.00 3.51
595 596 9.788889 ATATATTGAGAGACATGAAAATGCTGA 57.211 29.630 0.00 0.00 0.00 4.26
606 607 9.650539 GCACTACATGAATATATTGAGAGACAT 57.349 33.333 1.78 0.00 0.00 3.06
607 608 8.641541 TGCACTACATGAATATATTGAGAGACA 58.358 33.333 1.78 0.00 0.00 3.41
608 609 9.481340 TTGCACTACATGAATATATTGAGAGAC 57.519 33.333 1.78 0.00 0.00 3.36
638 1646 4.716977 GTGGGACCGGGGACTCCT 62.717 72.222 6.32 0.00 0.00 3.69
639 1647 4.716977 AGTGGGACCGGGGACTCC 62.717 72.222 6.32 2.71 0.00 3.85
640 1648 2.606826 AAGTGGGACCGGGGACTC 60.607 66.667 6.32 0.00 0.00 3.36
644 1652 3.246112 TGACAAGTGGGACCGGGG 61.246 66.667 6.32 0.00 0.00 5.73
664 1672 5.467063 GCTGTACCCTATAGAAAATGCTGAC 59.533 44.000 0.00 0.00 0.00 3.51
675 1683 6.365970 AAATGATCCAGCTGTACCCTATAG 57.634 41.667 13.81 0.00 0.00 1.31
686 1694 8.038862 TCCTTCTTATAGAAAATGATCCAGCT 57.961 34.615 0.00 0.00 33.19 4.24
687 1695 7.094848 GCTCCTTCTTATAGAAAATGATCCAGC 60.095 40.741 0.00 0.00 33.19 4.85
688 1696 7.935755 TGCTCCTTCTTATAGAAAATGATCCAG 59.064 37.037 0.00 0.00 33.19 3.86
690 1698 8.563732 GTTGCTCCTTCTTATAGAAAATGATCC 58.436 37.037 0.00 0.00 33.19 3.36
692 1700 7.254932 GCGTTGCTCCTTCTTATAGAAAATGAT 60.255 37.037 0.00 0.00 33.19 2.45
694 1702 6.195165 GCGTTGCTCCTTCTTATAGAAAATG 58.805 40.000 0.00 0.00 33.19 2.32
695 1703 5.006746 CGCGTTGCTCCTTCTTATAGAAAAT 59.993 40.000 0.00 0.00 33.19 1.82
696 1704 4.328983 CGCGTTGCTCCTTCTTATAGAAAA 59.671 41.667 0.00 0.00 33.19 2.29
697 1705 3.863424 CGCGTTGCTCCTTCTTATAGAAA 59.137 43.478 0.00 0.00 33.19 2.52
698 1706 3.129813 TCGCGTTGCTCCTTCTTATAGAA 59.870 43.478 5.77 0.00 32.50 2.10
699 1707 2.686405 TCGCGTTGCTCCTTCTTATAGA 59.314 45.455 5.77 0.00 0.00 1.98
700 1708 3.046390 CTCGCGTTGCTCCTTCTTATAG 58.954 50.000 5.77 0.00 0.00 1.31
703 1711 0.601558 ACTCGCGTTGCTCCTTCTTA 59.398 50.000 5.77 0.00 0.00 2.10
706 1714 2.095252 GGACTCGCGTTGCTCCTTC 61.095 63.158 5.77 0.00 0.00 3.46
707 1715 2.048127 GGACTCGCGTTGCTCCTT 60.048 61.111 5.77 0.00 0.00 3.36
710 1718 2.430244 TTCGGACTCGCGTTGCTC 60.430 61.111 5.77 0.00 36.13 4.26
711 1719 2.430921 CTTCGGACTCGCGTTGCT 60.431 61.111 5.77 0.00 36.13 3.91
712 1720 4.135493 GCTTCGGACTCGCGTTGC 62.135 66.667 5.77 0.00 36.13 4.17
713 1721 3.827784 CGCTTCGGACTCGCGTTG 61.828 66.667 5.77 2.81 41.78 4.10
739 2582 4.444081 CCCCTCCTCCGTCTCCGT 62.444 72.222 0.00 0.00 0.00 4.69
741 2584 2.123640 CTCCCCTCCTCCGTCTCC 60.124 72.222 0.00 0.00 0.00 3.71
742 2585 2.835895 GCTCCCCTCCTCCGTCTC 60.836 72.222 0.00 0.00 0.00 3.36
743 2586 4.467107 GGCTCCCCTCCTCCGTCT 62.467 72.222 0.00 0.00 0.00 4.18
744 2587 4.779733 TGGCTCCCCTCCTCCGTC 62.780 72.222 0.00 0.00 0.00 4.79
745 2588 4.787280 CTGGCTCCCCTCCTCCGT 62.787 72.222 0.00 0.00 0.00 4.69
747 2590 4.423209 ACCTGGCTCCCCTCCTCC 62.423 72.222 0.00 0.00 0.00 4.30
748 2591 2.766229 GACCTGGCTCCCCTCCTC 60.766 72.222 0.00 0.00 0.00 3.71
749 2592 4.787280 CGACCTGGCTCCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
845 2689 0.467384 ATGGCGGAAGTCTCTGATGG 59.533 55.000 0.00 0.00 36.07 3.51
846 2690 1.539929 GGATGGCGGAAGTCTCTGATG 60.540 57.143 0.00 0.00 36.07 3.07
848 2692 1.330655 GGGATGGCGGAAGTCTCTGA 61.331 60.000 0.00 0.00 36.07 3.27
849 2693 1.144936 GGGATGGCGGAAGTCTCTG 59.855 63.158 0.00 0.00 36.07 3.35
850 2694 2.066999 GGGGATGGCGGAAGTCTCT 61.067 63.158 0.00 0.00 36.07 3.10
851 2695 1.910580 TTGGGGATGGCGGAAGTCTC 61.911 60.000 0.00 0.00 36.07 3.36
852 2696 1.497309 TTTGGGGATGGCGGAAGTCT 61.497 55.000 0.00 0.00 36.07 3.24
853 2697 1.001393 TTTGGGGATGGCGGAAGTC 60.001 57.895 0.00 0.00 0.00 3.01
854 2698 1.304134 GTTTGGGGATGGCGGAAGT 60.304 57.895 0.00 0.00 0.00 3.01
920 2780 2.097038 CGCCGAGCTGGAAGTCTTG 61.097 63.158 0.00 0.00 42.00 3.02
1032 2914 2.041265 GGGGAGAAGAGAGGGGCA 59.959 66.667 0.00 0.00 0.00 5.36
1161 3223 2.186384 CGGAGCCAGAGCAGGAAG 59.814 66.667 0.00 0.00 43.56 3.46
1197 3259 2.241659 CCCCTCCTTGGCCTCCTTT 61.242 63.158 3.32 0.00 0.00 3.11
2094 4168 1.003718 GGTCTGGTCAAACCCGGAG 60.004 63.158 0.73 0.00 40.58 4.63
2151 4225 3.403057 CCTGTGCGTGAACCGACG 61.403 66.667 0.00 0.00 42.42 5.12
2235 4309 5.466728 CCACTCCATCACATAATCCTTTACG 59.533 44.000 0.00 0.00 0.00 3.18
2400 4474 0.239347 CCCTGCGTTTCTGCTTCTTG 59.761 55.000 0.00 0.00 35.36 3.02
2445 4519 2.678934 CACCATTGCAGCCCAGCT 60.679 61.111 0.00 0.00 40.77 4.24
2448 4522 3.588511 TCCCACCATTGCAGCCCA 61.589 61.111 0.00 0.00 0.00 5.36
2583 4657 1.746615 CCACCAGTTGATGCTCCCG 60.747 63.158 0.00 0.00 0.00 5.14
2772 4846 4.367450 CAGAGATAAGAACCAGTAGCAGC 58.633 47.826 0.00 0.00 0.00 5.25
2925 4999 2.612115 AGGGCCTCCTCCTGGTTG 60.612 66.667 0.00 0.00 39.80 3.77
2940 5014 1.812922 GACGGTGATGCAGAGCAGG 60.813 63.158 0.00 0.00 43.65 4.85
3096 5170 0.034476 ACCGAACTTTCTTCCGGGAC 59.966 55.000 0.00 0.00 45.63 4.46
3251 5327 1.056660 TTCCTCCACGGAGAGCTTTT 58.943 50.000 14.91 0.00 44.28 2.27
3252 5328 1.002544 CTTTCCTCCACGGAGAGCTTT 59.997 52.381 14.91 0.00 44.28 3.51
3435 5513 2.290514 CCCAGAAGTGATGCCTGAAGAA 60.291 50.000 0.00 0.00 0.00 2.52
3722 6845 1.834263 GGTGAGTAAGGCATCCAGTCT 59.166 52.381 0.00 0.00 0.00 3.24
3730 6853 1.347707 CAAGACCAGGTGAGTAAGGCA 59.652 52.381 0.00 0.00 0.00 4.75
3735 6858 3.157518 TGGCAAGACCAGGTGAGTA 57.842 52.632 0.00 0.00 46.36 2.59
3755 6878 2.620115 CAGTGTGTCAAAATGGAGCACT 59.380 45.455 0.00 0.00 35.75 4.40
3788 6911 4.274069 CAACATCAAGTTCACGACAACTG 58.726 43.478 4.82 1.37 38.74 3.16
3796 6940 8.547967 TCTAAGATTACCAACATCAAGTTCAC 57.452 34.615 0.00 0.00 38.74 3.18
3835 6979 0.882927 TACCACTCACGCCAAACAGC 60.883 55.000 0.00 0.00 0.00 4.40
3844 6988 0.108615 CAGGCTTCCTACCACTCACG 60.109 60.000 0.00 0.00 29.64 4.35
3873 7017 1.630126 ATGCAGACTTCCCATCGCCT 61.630 55.000 0.00 0.00 0.00 5.52
3894 7040 3.510360 AGTACGGGCTATTGAATCGCTAT 59.490 43.478 1.66 0.00 0.00 2.97
3966 7116 1.003233 AGGTACAAGTAAGCAGGTGGC 59.997 52.381 0.00 0.00 45.30 5.01
4072 7226 6.202954 CCATTTCGTCCATTTCAGTACTATCC 59.797 42.308 0.00 0.00 0.00 2.59
4089 7243 4.335416 ACTGGATGATTGAACCATTTCGT 58.665 39.130 0.00 0.00 34.04 3.85
4090 7244 4.970662 ACTGGATGATTGAACCATTTCG 57.029 40.909 0.00 0.00 34.04 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.