Multiple sequence alignment - TraesCS7D01G500400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G500400 chr7D 100.000 3104 0 0 1 3104 606656440 606659543 0.000000e+00 5733.0
1 TraesCS7D01G500400 chr7D 86.042 1655 161 26 896 2492 606684122 606685764 0.000000e+00 1712.0
2 TraesCS7D01G500400 chr7B 94.144 2254 96 13 693 2920 690904143 690906386 0.000000e+00 3398.0
3 TraesCS7D01G500400 chr7B 85.179 641 68 16 2296 2920 690936274 690936903 1.570000e-177 632.0
4 TraesCS7D01G500400 chr7B 82.429 387 59 8 909 1293 691027801 691028180 2.310000e-86 329.0
5 TraesCS7D01G500400 chr7B 100.000 39 0 0 3063 3101 690906478 690906516 4.290000e-09 73.1
6 TraesCS7D01G500400 chr7A 93.078 1358 82 3 833 2179 698729283 698730639 0.000000e+00 1977.0
7 TraesCS7D01G500400 chr7A 84.926 1413 165 17 1126 2492 698744484 698745894 0.000000e+00 1386.0
8 TraesCS7D01G500400 chr7A 85.124 968 104 17 1562 2492 698822542 698823506 0.000000e+00 953.0
9 TraesCS7D01G500400 chr7A 84.488 967 112 15 1562 2492 698954845 698955809 0.000000e+00 920.0
10 TraesCS7D01G500400 chr7A 88.828 725 44 12 2211 2920 698731062 698731764 0.000000e+00 856.0
11 TraesCS7D01G500400 chr7A 97.931 145 3 0 1 145 698729288 698729432 5.140000e-63 252.0
12 TraesCS7D01G500400 chr7A 99.029 103 1 0 3002 3104 698731763 698731865 5.290000e-43 185.0
13 TraesCS7D01G500400 chr4B 92.781 374 24 2 2477 2850 243640256 243640626 3.520000e-149 538.0
14 TraesCS7D01G500400 chr4B 94.220 173 10 0 2250 2422 243640087 243640259 6.600000e-67 265.0
15 TraesCS7D01G500400 chr6A 91.642 335 27 1 2516 2850 130945002 130944669 2.180000e-126 462.0
16 TraesCS7D01G500400 chr6A 91.642 335 27 1 2516 2850 189413022 189412689 2.180000e-126 462.0
17 TraesCS7D01G500400 chr6A 78.682 258 52 1 1610 1867 616989668 616989414 5.320000e-38 169.0
18 TraesCS7D01G500400 chr2A 90.746 335 30 1 2516 2850 554435795 554435462 2.200000e-121 446.0
19 TraesCS7D01G500400 chr2A 73.791 393 87 13 1609 1993 753433698 753433314 1.160000e-29 141.0
20 TraesCS7D01G500400 chr6B 89.971 339 32 2 2477 2814 322068436 322068773 1.320000e-118 436.0
21 TraesCS7D01G500400 chr1A 90.625 320 29 1 2510 2829 522898927 522899245 1.030000e-114 424.0
22 TraesCS7D01G500400 chr6D 91.919 297 15 6 343 634 327022155 327021863 1.040000e-109 407.0
23 TraesCS7D01G500400 chr6D 93.000 100 7 0 2919 3018 163130334 163130235 2.490000e-31 147.0
24 TraesCS7D01G500400 chr6D 95.556 90 4 0 2915 3004 309072500 309072589 8.970000e-31 145.0
25 TraesCS7D01G500400 chr6D 92.000 100 8 0 2915 3014 340997478 340997379 1.160000e-29 141.0
26 TraesCS7D01G500400 chr6D 85.263 95 6 6 685 774 11573685 11573776 1.190000e-14 91.6
27 TraesCS7D01G500400 chr3B 91.065 291 18 5 343 629 377115405 377115119 1.350000e-103 387.0
28 TraesCS7D01G500400 chr3B 92.233 103 8 0 2915 3017 8855199 8855097 2.490000e-31 147.0
29 TraesCS7D01G500400 chr3B 81.169 154 27 2 1030 1182 11469600 11469752 4.200000e-24 122.0
30 TraesCS7D01G500400 chr3A 90.753 292 19 5 343 629 319962599 319962311 1.750000e-102 383.0
31 TraesCS7D01G500400 chr2D 90.066 302 21 6 343 640 62406296 62406592 1.750000e-102 383.0
32 TraesCS7D01G500400 chr2D 90.268 298 20 6 343 635 328796536 328796243 6.280000e-102 381.0
33 TraesCS7D01G500400 chr2D 82.993 147 23 2 1043 1188 621590007 621589862 6.980000e-27 132.0
34 TraesCS7D01G500400 chr2D 87.500 80 7 1 695 774 2564847 2564923 4.260000e-14 89.8
35 TraesCS7D01G500400 chr3D 90.722 291 20 4 343 629 255424678 255424391 6.280000e-102 381.0
36 TraesCS7D01G500400 chr3D 91.262 103 7 2 2915 3015 435299778 435299676 4.170000e-29 139.0
37 TraesCS7D01G500400 chr3D 85.965 114 16 0 1069 1182 9122056 9122169 4.200000e-24 122.0
38 TraesCS7D01G500400 chr3D 84.211 95 8 6 685 774 448983472 448983380 5.520000e-13 86.1
39 TraesCS7D01G500400 chr5B 89.286 308 26 4 342 646 62971304 62971001 2.260000e-101 379.0
40 TraesCS7D01G500400 chr2B 89.967 299 23 4 345 639 697672330 697672625 2.260000e-101 379.0
41 TraesCS7D01G500400 chr2B 90.476 105 9 1 2900 3003 662898902 662899006 1.500000e-28 137.0
42 TraesCS7D01G500400 chr2B 77.027 222 51 0 1048 1269 762957752 762957531 9.040000e-26 128.0
43 TraesCS7D01G500400 chr2B 72.774 393 89 14 1609 1993 763492744 763492362 1.960000e-22 117.0
44 TraesCS7D01G500400 chr2B 84.946 93 10 3 685 774 56779772 56779863 1.190000e-14 91.6
45 TraesCS7D01G500400 chr4D 89.691 291 23 5 343 629 301141267 301140980 6.330000e-97 364.0
46 TraesCS7D01G500400 chr4D 93.750 96 5 1 2916 3010 492239315 492239220 3.230000e-30 143.0
47 TraesCS7D01G500400 chr4D 83.696 92 9 3 682 773 342914665 342914750 7.130000e-12 82.4
48 TraesCS7D01G500400 chr5D 93.000 100 5 2 2914 3012 447627024 447626926 8.970000e-31 145.0
49 TraesCS7D01G500400 chr5D 87.931 116 11 3 2919 3033 285845272 285845159 1.940000e-27 134.0
50 TraesCS7D01G500400 chr5D 88.235 85 6 2 690 774 305988939 305988859 7.080000e-17 99.0
51 TraesCS7D01G500400 chr1D 83.740 123 11 7 651 770 5138382 5138498 1.180000e-19 108.0
52 TraesCS7D01G500400 chr5A 86.022 93 8 3 682 774 18944864 18944951 9.160000e-16 95.3
53 TraesCS7D01G500400 chr4A 88.750 80 6 2 695 774 708534599 708534675 9.160000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G500400 chr7D 606656440 606659543 3103 False 5733.00 5733 100.0000 1 3104 1 chr7D.!!$F1 3103
1 TraesCS7D01G500400 chr7D 606684122 606685764 1642 False 1712.00 1712 86.0420 896 2492 1 chr7D.!!$F2 1596
2 TraesCS7D01G500400 chr7B 690904143 690906516 2373 False 1735.55 3398 97.0720 693 3101 2 chr7B.!!$F3 2408
3 TraesCS7D01G500400 chr7B 690936274 690936903 629 False 632.00 632 85.1790 2296 2920 1 chr7B.!!$F1 624
4 TraesCS7D01G500400 chr7A 698744484 698745894 1410 False 1386.00 1386 84.9260 1126 2492 1 chr7A.!!$F1 1366
5 TraesCS7D01G500400 chr7A 698822542 698823506 964 False 953.00 953 85.1240 1562 2492 1 chr7A.!!$F2 930
6 TraesCS7D01G500400 chr7A 698954845 698955809 964 False 920.00 920 84.4880 1562 2492 1 chr7A.!!$F3 930
7 TraesCS7D01G500400 chr7A 698729283 698731865 2582 False 817.50 1977 94.7165 1 3104 4 chr7A.!!$F4 3103
8 TraesCS7D01G500400 chr4B 243640087 243640626 539 False 401.50 538 93.5005 2250 2850 2 chr4B.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 577 0.179001 AAAGTTGGACGAAGGGGTGG 60.179 55.0 0.0 0.0 0.00 4.61 F
582 583 0.179012 GGACGAAGGGGTGGTTGAAA 60.179 55.0 0.0 0.0 0.00 2.69 F
1514 1548 0.248702 GAGGAGGTCGAGACGAATGC 60.249 60.0 0.0 0.0 37.72 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 1538 0.037326 TGGACCACAGCATTCGTCTC 60.037 55.000 0.0 0.0 0.00 3.36 R
1769 1810 0.178767 CTCATCCATCGGAGGCAACA 59.821 55.000 0.0 0.0 34.05 3.33 R
2985 3493 1.646447 ACATACTCCCTCTGTCCCAGA 59.354 52.381 0.0 0.0 38.25 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.414700 CCGCTCACTGTTCGCCAC 61.415 66.667 0.00 0.00 0.00 5.01
32 33 3.414700 CGCTCACTGTTCGCCACC 61.415 66.667 0.00 0.00 0.00 4.61
33 34 3.414700 GCTCACTGTTCGCCACCG 61.415 66.667 0.00 0.00 0.00 4.94
34 35 3.414700 CTCACTGTTCGCCACCGC 61.415 66.667 0.00 0.00 0.00 5.68
35 36 4.980805 TCACTGTTCGCCACCGCC 62.981 66.667 0.00 0.00 0.00 6.13
36 37 4.988598 CACTGTTCGCCACCGCCT 62.989 66.667 0.00 0.00 0.00 5.52
37 38 4.988598 ACTGTTCGCCACCGCCTG 62.989 66.667 0.00 0.00 0.00 4.85
71 72 4.301027 CGCGCCACCTCCCCTATC 62.301 72.222 0.00 0.00 0.00 2.08
72 73 4.301027 GCGCCACCTCCCCTATCG 62.301 72.222 0.00 0.00 0.00 2.92
73 74 4.301027 CGCCACCTCCCCTATCGC 62.301 72.222 0.00 0.00 0.00 4.58
74 75 3.942439 GCCACCTCCCCTATCGCC 61.942 72.222 0.00 0.00 0.00 5.54
75 76 3.242291 CCACCTCCCCTATCGCCC 61.242 72.222 0.00 0.00 0.00 6.13
76 77 3.242291 CACCTCCCCTATCGCCCC 61.242 72.222 0.00 0.00 0.00 5.80
77 78 4.936081 ACCTCCCCTATCGCCCCG 62.936 72.222 0.00 0.00 0.00 5.73
78 79 4.936081 CCTCCCCTATCGCCCCGT 62.936 72.222 0.00 0.00 0.00 5.28
79 80 3.303928 CTCCCCTATCGCCCCGTC 61.304 72.222 0.00 0.00 0.00 4.79
83 84 4.647615 CCTATCGCCCCGTCGCAG 62.648 72.222 0.00 0.00 0.00 5.18
84 85 3.900892 CTATCGCCCCGTCGCAGT 61.901 66.667 0.00 0.00 0.00 4.40
85 86 3.426117 CTATCGCCCCGTCGCAGTT 62.426 63.158 0.00 0.00 0.00 3.16
86 87 3.420214 TATCGCCCCGTCGCAGTTC 62.420 63.158 0.00 0.00 0.00 3.01
91 92 4.452733 CCCGTCGCAGTTCCCCTC 62.453 72.222 0.00 0.00 0.00 4.30
92 93 4.796231 CCGTCGCAGTTCCCCTCG 62.796 72.222 0.00 0.00 0.00 4.63
110 111 4.929707 CCCGCGGCTCCCATAACC 62.930 72.222 22.85 0.00 0.00 2.85
141 142 4.516135 GCCGCCGCGCTTAGTTTC 62.516 66.667 7.42 0.00 0.00 2.78
142 143 2.813908 CCGCCGCGCTTAGTTTCT 60.814 61.111 7.42 0.00 0.00 2.52
143 144 2.395690 CGCCGCGCTTAGTTTCTG 59.604 61.111 5.56 0.00 0.00 3.02
144 145 2.098489 GCCGCGCTTAGTTTCTGC 59.902 61.111 5.56 0.00 0.00 4.26
145 146 2.391389 GCCGCGCTTAGTTTCTGCT 61.391 57.895 5.56 0.00 0.00 4.24
146 147 1.710339 CCGCGCTTAGTTTCTGCTC 59.290 57.895 5.56 0.00 0.00 4.26
147 148 1.696832 CCGCGCTTAGTTTCTGCTCC 61.697 60.000 5.56 0.00 0.00 4.70
148 149 1.696832 CGCGCTTAGTTTCTGCTCCC 61.697 60.000 5.56 0.00 0.00 4.30
149 150 0.673644 GCGCTTAGTTTCTGCTCCCA 60.674 55.000 0.00 0.00 0.00 4.37
150 151 2.014068 GCGCTTAGTTTCTGCTCCCAT 61.014 52.381 0.00 0.00 0.00 4.00
151 152 2.741878 GCGCTTAGTTTCTGCTCCCATA 60.742 50.000 0.00 0.00 0.00 2.74
152 153 3.531538 CGCTTAGTTTCTGCTCCCATAA 58.468 45.455 0.00 0.00 0.00 1.90
153 154 3.309954 CGCTTAGTTTCTGCTCCCATAAC 59.690 47.826 0.00 0.00 0.00 1.89
154 155 3.628032 GCTTAGTTTCTGCTCCCATAACC 59.372 47.826 0.00 0.00 0.00 2.85
155 156 2.403252 AGTTTCTGCTCCCATAACCG 57.597 50.000 0.00 0.00 0.00 4.44
156 157 0.733150 GTTTCTGCTCCCATAACCGC 59.267 55.000 0.00 0.00 0.00 5.68
157 158 0.742990 TTTCTGCTCCCATAACCGCG 60.743 55.000 0.00 0.00 0.00 6.46
158 159 3.272334 CTGCTCCCATAACCGCGC 61.272 66.667 0.00 0.00 0.00 6.86
161 162 2.960129 CTCCCATAACCGCGCGTC 60.960 66.667 29.95 0.00 0.00 5.19
162 163 4.858433 TCCCATAACCGCGCGTCG 62.858 66.667 29.95 17.12 38.08 5.12
202 203 9.526713 TTGAAGACAATTTTTCAAATTCGATGA 57.473 25.926 6.94 0.00 39.57 2.92
203 204 9.526713 TGAAGACAATTTTTCAAATTCGATGAA 57.473 25.926 0.00 0.00 35.11 2.57
204 205 9.783425 GAAGACAATTTTTCAAATTCGATGAAC 57.217 29.630 0.00 0.00 36.57 3.18
205 206 8.298030 AGACAATTTTTCAAATTCGATGAACC 57.702 30.769 0.00 0.00 36.57 3.62
206 207 8.143835 AGACAATTTTTCAAATTCGATGAACCT 58.856 29.630 0.00 0.00 36.57 3.50
207 208 8.661352 ACAATTTTTCAAATTCGATGAACCTT 57.339 26.923 0.00 0.00 36.57 3.50
208 209 9.108284 ACAATTTTTCAAATTCGATGAACCTTT 57.892 25.926 0.00 0.00 36.57 3.11
209 210 9.934190 CAATTTTTCAAATTCGATGAACCTTTT 57.066 25.926 0.00 0.00 36.57 2.27
262 263 9.883142 TTCACTAAACCTTTTCAAATTCAATGT 57.117 25.926 0.00 0.00 0.00 2.71
312 313 7.907214 TTTCTCTAGGAAAAAGAGCACATAC 57.093 36.000 4.49 0.00 40.51 2.39
313 314 6.859112 TCTCTAGGAAAAAGAGCACATACT 57.141 37.500 0.00 0.00 40.30 2.12
314 315 6.634805 TCTCTAGGAAAAAGAGCACATACTG 58.365 40.000 0.00 0.00 40.30 2.74
315 316 6.211584 TCTCTAGGAAAAAGAGCACATACTGT 59.788 38.462 0.00 0.00 40.30 3.55
316 317 7.396339 TCTCTAGGAAAAAGAGCACATACTGTA 59.604 37.037 0.00 0.00 40.30 2.74
317 318 7.548097 TCTAGGAAAAAGAGCACATACTGTAG 58.452 38.462 0.00 0.00 0.00 2.74
318 319 4.938226 AGGAAAAAGAGCACATACTGTAGC 59.062 41.667 0.00 0.00 0.00 3.58
319 320 4.695455 GGAAAAAGAGCACATACTGTAGCA 59.305 41.667 0.00 0.00 30.52 3.49
320 321 5.181245 GGAAAAAGAGCACATACTGTAGCAA 59.819 40.000 0.00 0.00 30.52 3.91
321 322 6.293955 GGAAAAAGAGCACATACTGTAGCAAA 60.294 38.462 0.00 0.00 30.52 3.68
322 323 5.613358 AAAGAGCACATACTGTAGCAAAC 57.387 39.130 0.00 0.00 30.52 2.93
323 324 3.600388 AGAGCACATACTGTAGCAAACC 58.400 45.455 0.00 0.00 30.52 3.27
324 325 3.007940 AGAGCACATACTGTAGCAAACCA 59.992 43.478 0.00 0.00 30.52 3.67
325 326 3.750371 AGCACATACTGTAGCAAACCAA 58.250 40.909 0.00 0.00 30.52 3.67
326 327 3.502211 AGCACATACTGTAGCAAACCAAC 59.498 43.478 0.00 0.00 30.52 3.77
327 328 3.502211 GCACATACTGTAGCAAACCAACT 59.498 43.478 0.00 0.00 0.00 3.16
328 329 4.023193 GCACATACTGTAGCAAACCAACTT 60.023 41.667 0.00 0.00 0.00 2.66
329 330 5.451908 CACATACTGTAGCAAACCAACTTG 58.548 41.667 0.00 0.00 0.00 3.16
330 331 5.008613 CACATACTGTAGCAAACCAACTTGT 59.991 40.000 0.00 0.00 0.00 3.16
331 332 5.592688 ACATACTGTAGCAAACCAACTTGTT 59.407 36.000 0.00 0.00 0.00 2.83
332 333 6.096282 ACATACTGTAGCAAACCAACTTGTTT 59.904 34.615 0.00 0.00 38.95 2.83
333 334 5.400066 ACTGTAGCAAACCAACTTGTTTT 57.600 34.783 0.00 0.00 36.33 2.43
334 335 5.789521 ACTGTAGCAAACCAACTTGTTTTT 58.210 33.333 0.00 0.00 36.33 1.94
335 336 5.867174 ACTGTAGCAAACCAACTTGTTTTTC 59.133 36.000 0.00 0.00 36.33 2.29
336 337 5.172205 TGTAGCAAACCAACTTGTTTTTCC 58.828 37.500 0.00 0.00 36.33 3.13
337 338 4.551702 AGCAAACCAACTTGTTTTTCCT 57.448 36.364 0.00 0.00 36.33 3.36
338 339 5.669164 AGCAAACCAACTTGTTTTTCCTA 57.331 34.783 0.00 0.00 36.33 2.94
339 340 6.043854 AGCAAACCAACTTGTTTTTCCTAA 57.956 33.333 0.00 0.00 36.33 2.69
340 341 6.106003 AGCAAACCAACTTGTTTTTCCTAAG 58.894 36.000 0.00 0.00 36.33 2.18
341 342 6.071051 AGCAAACCAACTTGTTTTTCCTAAGA 60.071 34.615 0.00 0.00 36.33 2.10
342 343 6.592220 GCAAACCAACTTGTTTTTCCTAAGAA 59.408 34.615 0.00 0.00 36.33 2.52
343 344 7.412563 GCAAACCAACTTGTTTTTCCTAAGAAC 60.413 37.037 0.00 0.00 36.33 3.01
344 345 7.476540 AACCAACTTGTTTTTCCTAAGAACT 57.523 32.000 0.00 0.00 0.00 3.01
345 346 8.584063 AACCAACTTGTTTTTCCTAAGAACTA 57.416 30.769 0.00 0.00 0.00 2.24
346 347 8.221965 ACCAACTTGTTTTTCCTAAGAACTAG 57.778 34.615 0.00 0.00 34.06 2.57
347 348 8.050930 ACCAACTTGTTTTTCCTAAGAACTAGA 58.949 33.333 0.00 0.00 32.83 2.43
348 349 8.899771 CCAACTTGTTTTTCCTAAGAACTAGAA 58.100 33.333 0.00 0.00 32.83 2.10
349 350 9.717892 CAACTTGTTTTTCCTAAGAACTAGAAC 57.282 33.333 0.00 0.00 32.83 3.01
350 351 9.457436 AACTTGTTTTTCCTAAGAACTAGAACA 57.543 29.630 0.00 0.00 32.83 3.18
351 352 9.457436 ACTTGTTTTTCCTAAGAACTAGAACAA 57.543 29.630 0.00 0.00 33.90 2.83
354 355 8.349983 TGTTTTTCCTAAGAACTAGAACAATGC 58.650 33.333 0.00 0.00 0.00 3.56
355 356 7.448748 TTTTCCTAAGAACTAGAACAATGCC 57.551 36.000 0.00 0.00 0.00 4.40
356 357 5.099042 TCCTAAGAACTAGAACAATGCCC 57.901 43.478 0.00 0.00 0.00 5.36
357 358 3.871594 CCTAAGAACTAGAACAATGCCCG 59.128 47.826 0.00 0.00 0.00 6.13
358 359 3.418684 AAGAACTAGAACAATGCCCGT 57.581 42.857 0.00 0.00 0.00 5.28
359 360 2.699954 AGAACTAGAACAATGCCCGTG 58.300 47.619 0.00 0.00 0.00 4.94
360 361 1.130561 GAACTAGAACAATGCCCGTGC 59.869 52.381 0.00 0.00 38.26 5.34
361 362 1.019278 ACTAGAACAATGCCCGTGCG 61.019 55.000 0.00 0.00 41.78 5.34
362 363 1.004320 TAGAACAATGCCCGTGCGT 60.004 52.632 0.00 0.00 41.78 5.24
367 368 3.600694 AATGCCCGTGCGTTGCAA 61.601 55.556 0.00 0.00 44.90 4.08
368 369 3.839642 AATGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 44.90 4.17
387 388 9.216117 GTTGCAACGGGATATAAATATTCTAGT 57.784 33.333 14.90 0.00 0.00 2.57
412 413 9.953697 GTATGTTAACTTGTGGTTTAATTGTCA 57.046 29.630 7.22 0.00 39.17 3.58
423 424 9.295214 TGTGGTTTAATTGTCAATAATAATGCG 57.705 29.630 0.00 0.00 0.00 4.73
424 425 9.509855 GTGGTTTAATTGTCAATAATAATGCGA 57.490 29.630 0.00 0.00 0.00 5.10
469 470 9.645128 TCATCAAATTATGACCATGAATTACCT 57.355 29.630 0.00 0.00 41.93 3.08
533 534 9.214957 GGAATTGGTCCAAAAAGTAAATTAAGG 57.785 33.333 8.75 0.00 46.97 2.69
534 535 9.772973 GAATTGGTCCAAAAAGTAAATTAAGGT 57.227 29.630 8.75 0.00 0.00 3.50
535 536 9.554395 AATTGGTCCAAAAAGTAAATTAAGGTG 57.446 29.630 8.75 0.00 0.00 4.00
536 537 7.899648 TGGTCCAAAAAGTAAATTAAGGTGA 57.100 32.000 0.00 0.00 0.00 4.02
537 538 8.485578 TGGTCCAAAAAGTAAATTAAGGTGAT 57.514 30.769 0.00 0.00 0.00 3.06
538 539 8.929487 TGGTCCAAAAAGTAAATTAAGGTGATT 58.071 29.630 0.00 0.00 0.00 2.57
539 540 9.203421 GGTCCAAAAAGTAAATTAAGGTGATTG 57.797 33.333 0.00 0.00 0.00 2.67
540 541 9.974980 GTCCAAAAAGTAAATTAAGGTGATTGA 57.025 29.630 0.00 0.00 0.00 2.57
567 568 6.918892 TCATATACATGGAAAAGTTGGACG 57.081 37.500 0.00 0.00 32.61 4.79
568 569 6.645306 TCATATACATGGAAAAGTTGGACGA 58.355 36.000 0.00 0.00 32.61 4.20
569 570 7.106890 TCATATACATGGAAAAGTTGGACGAA 58.893 34.615 0.00 0.00 32.61 3.85
570 571 5.880054 ATACATGGAAAAGTTGGACGAAG 57.120 39.130 0.00 0.00 0.00 3.79
571 572 2.884639 ACATGGAAAAGTTGGACGAAGG 59.115 45.455 0.00 0.00 0.00 3.46
572 573 1.975660 TGGAAAAGTTGGACGAAGGG 58.024 50.000 0.00 0.00 0.00 3.95
573 574 1.244816 GGAAAAGTTGGACGAAGGGG 58.755 55.000 0.00 0.00 0.00 4.79
574 575 1.478105 GGAAAAGTTGGACGAAGGGGT 60.478 52.381 0.00 0.00 0.00 4.95
575 576 1.607148 GAAAAGTTGGACGAAGGGGTG 59.393 52.381 0.00 0.00 0.00 4.61
576 577 0.179001 AAAGTTGGACGAAGGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
577 578 1.350310 AAGTTGGACGAAGGGGTGGT 61.350 55.000 0.00 0.00 0.00 4.16
578 579 1.149854 GTTGGACGAAGGGGTGGTT 59.850 57.895 0.00 0.00 0.00 3.67
579 580 1.149627 TTGGACGAAGGGGTGGTTG 59.850 57.895 0.00 0.00 0.00 3.77
580 581 1.346479 TTGGACGAAGGGGTGGTTGA 61.346 55.000 0.00 0.00 0.00 3.18
581 582 1.346479 TGGACGAAGGGGTGGTTGAA 61.346 55.000 0.00 0.00 0.00 2.69
582 583 0.179012 GGACGAAGGGGTGGTTGAAA 60.179 55.000 0.00 0.00 0.00 2.69
583 584 1.235724 GACGAAGGGGTGGTTGAAAG 58.764 55.000 0.00 0.00 0.00 2.62
584 585 0.841289 ACGAAGGGGTGGTTGAAAGA 59.159 50.000 0.00 0.00 0.00 2.52
585 586 1.213430 ACGAAGGGGTGGTTGAAAGAA 59.787 47.619 0.00 0.00 0.00 2.52
586 587 2.303175 CGAAGGGGTGGTTGAAAGAAA 58.697 47.619 0.00 0.00 0.00 2.52
587 588 2.293399 CGAAGGGGTGGTTGAAAGAAAG 59.707 50.000 0.00 0.00 0.00 2.62
588 589 2.381752 AGGGGTGGTTGAAAGAAAGG 57.618 50.000 0.00 0.00 0.00 3.11
589 590 1.573857 AGGGGTGGTTGAAAGAAAGGT 59.426 47.619 0.00 0.00 0.00 3.50
590 591 1.686587 GGGGTGGTTGAAAGAAAGGTG 59.313 52.381 0.00 0.00 0.00 4.00
591 592 2.661718 GGGTGGTTGAAAGAAAGGTGA 58.338 47.619 0.00 0.00 0.00 4.02
592 593 3.028130 GGGTGGTTGAAAGAAAGGTGAA 58.972 45.455 0.00 0.00 0.00 3.18
593 594 3.449377 GGGTGGTTGAAAGAAAGGTGAAA 59.551 43.478 0.00 0.00 0.00 2.69
594 595 4.100963 GGGTGGTTGAAAGAAAGGTGAAAT 59.899 41.667 0.00 0.00 0.00 2.17
595 596 5.049828 GGTGGTTGAAAGAAAGGTGAAATG 58.950 41.667 0.00 0.00 0.00 2.32
596 597 5.049828 GTGGTTGAAAGAAAGGTGAAATGG 58.950 41.667 0.00 0.00 0.00 3.16
597 598 4.100808 TGGTTGAAAGAAAGGTGAAATGGG 59.899 41.667 0.00 0.00 0.00 4.00
598 599 4.343814 GGTTGAAAGAAAGGTGAAATGGGA 59.656 41.667 0.00 0.00 0.00 4.37
599 600 5.163353 GGTTGAAAGAAAGGTGAAATGGGAA 60.163 40.000 0.00 0.00 0.00 3.97
600 601 6.464322 GGTTGAAAGAAAGGTGAAATGGGAAT 60.464 38.462 0.00 0.00 0.00 3.01
601 602 6.345096 TGAAAGAAAGGTGAAATGGGAATC 57.655 37.500 0.00 0.00 0.00 2.52
602 603 6.077322 TGAAAGAAAGGTGAAATGGGAATCT 58.923 36.000 0.00 0.00 0.00 2.40
603 604 6.554605 TGAAAGAAAGGTGAAATGGGAATCTT 59.445 34.615 0.00 0.00 0.00 2.40
604 605 7.728083 TGAAAGAAAGGTGAAATGGGAATCTTA 59.272 33.333 0.00 0.00 0.00 2.10
605 606 7.468141 AAGAAAGGTGAAATGGGAATCTTAC 57.532 36.000 0.00 0.00 0.00 2.34
606 607 5.648092 AGAAAGGTGAAATGGGAATCTTACG 59.352 40.000 0.00 0.00 0.00 3.18
607 608 4.569719 AGGTGAAATGGGAATCTTACGT 57.430 40.909 0.00 0.00 0.00 3.57
608 609 4.918588 AGGTGAAATGGGAATCTTACGTT 58.081 39.130 0.00 0.00 0.00 3.99
609 610 4.941873 AGGTGAAATGGGAATCTTACGTTC 59.058 41.667 0.00 0.00 0.00 3.95
610 611 4.941873 GGTGAAATGGGAATCTTACGTTCT 59.058 41.667 0.00 0.00 0.00 3.01
611 612 5.414765 GGTGAAATGGGAATCTTACGTTCTT 59.585 40.000 0.00 0.00 0.00 2.52
612 613 6.072119 GGTGAAATGGGAATCTTACGTTCTTT 60.072 38.462 0.00 0.00 0.00 2.52
613 614 7.368059 GTGAAATGGGAATCTTACGTTCTTTT 58.632 34.615 0.00 0.00 0.00 2.27
614 615 7.865889 GTGAAATGGGAATCTTACGTTCTTTTT 59.134 33.333 0.00 0.00 0.00 1.94
615 616 9.069082 TGAAATGGGAATCTTACGTTCTTTTTA 57.931 29.630 0.00 0.00 0.00 1.52
616 617 9.902196 GAAATGGGAATCTTACGTTCTTTTTAA 57.098 29.630 0.00 0.00 0.00 1.52
617 618 9.908152 AAATGGGAATCTTACGTTCTTTTTAAG 57.092 29.630 0.00 0.00 0.00 1.85
618 619 8.631480 ATGGGAATCTTACGTTCTTTTTAAGT 57.369 30.769 0.00 0.00 0.00 2.24
619 620 9.729281 ATGGGAATCTTACGTTCTTTTTAAGTA 57.271 29.630 0.00 0.00 0.00 2.24
620 621 9.211485 TGGGAATCTTACGTTCTTTTTAAGTAG 57.789 33.333 0.00 0.00 0.00 2.57
621 622 9.212641 GGGAATCTTACGTTCTTTTTAAGTAGT 57.787 33.333 0.00 0.00 0.00 2.73
644 645 8.842358 AGTAGAGATAGAGATAGAGAAAACGG 57.158 38.462 0.00 0.00 0.00 4.44
645 646 8.434392 AGTAGAGATAGAGATAGAGAAAACGGT 58.566 37.037 0.00 0.00 0.00 4.83
646 647 7.739498 AGAGATAGAGATAGAGAAAACGGTC 57.261 40.000 0.00 0.00 0.00 4.79
647 648 7.284074 AGAGATAGAGATAGAGAAAACGGTCA 58.716 38.462 0.00 0.00 0.00 4.02
648 649 7.776030 AGAGATAGAGATAGAGAAAACGGTCAA 59.224 37.037 0.00 0.00 0.00 3.18
649 650 8.472007 AGATAGAGATAGAGAAAACGGTCAAT 57.528 34.615 0.00 0.00 0.00 2.57
650 651 9.575868 AGATAGAGATAGAGAAAACGGTCAATA 57.424 33.333 0.00 0.00 0.00 1.90
651 652 9.615295 GATAGAGATAGAGAAAACGGTCAATAC 57.385 37.037 0.00 0.00 0.00 1.89
652 653 7.648039 AGAGATAGAGAAAACGGTCAATACT 57.352 36.000 0.00 0.00 0.00 2.12
653 654 7.484975 AGAGATAGAGAAAACGGTCAATACTG 58.515 38.462 0.00 0.00 38.04 2.74
655 656 8.289939 AGATAGAGAAAACGGTCAATACTGTA 57.710 34.615 0.00 0.00 44.70 2.74
656 657 8.407064 AGATAGAGAAAACGGTCAATACTGTAG 58.593 37.037 0.00 0.00 44.70 2.74
657 658 5.169295 AGAGAAAACGGTCAATACTGTAGC 58.831 41.667 0.00 0.00 44.70 3.58
658 659 4.890088 AGAAAACGGTCAATACTGTAGCA 58.110 39.130 0.00 0.00 44.70 3.49
659 660 4.929808 AGAAAACGGTCAATACTGTAGCAG 59.070 41.667 0.00 0.00 44.70 4.24
660 661 3.955650 AACGGTCAATACTGTAGCAGT 57.044 42.857 6.99 6.99 44.70 4.40
661 662 3.955650 ACGGTCAATACTGTAGCAGTT 57.044 42.857 7.11 0.00 42.59 3.16
662 663 4.267349 ACGGTCAATACTGTAGCAGTTT 57.733 40.909 7.11 0.00 42.59 2.66
663 664 4.638304 ACGGTCAATACTGTAGCAGTTTT 58.362 39.130 7.11 3.40 42.59 2.43
664 665 5.061179 ACGGTCAATACTGTAGCAGTTTTT 58.939 37.500 7.11 0.17 42.59 1.94
665 666 6.225318 ACGGTCAATACTGTAGCAGTTTTTA 58.775 36.000 7.11 0.00 42.59 1.52
666 667 6.367969 ACGGTCAATACTGTAGCAGTTTTTAG 59.632 38.462 7.11 0.00 42.59 1.85
667 668 6.588756 CGGTCAATACTGTAGCAGTTTTTAGA 59.411 38.462 7.11 0.00 42.59 2.10
668 669 7.117236 CGGTCAATACTGTAGCAGTTTTTAGAA 59.883 37.037 7.11 0.00 42.59 2.10
669 670 8.947115 GGTCAATACTGTAGCAGTTTTTAGAAT 58.053 33.333 7.11 0.00 42.59 2.40
670 671 9.760660 GTCAATACTGTAGCAGTTTTTAGAATG 57.239 33.333 7.11 0.00 42.59 2.67
671 672 9.719355 TCAATACTGTAGCAGTTTTTAGAATGA 57.281 29.630 7.11 0.00 42.59 2.57
674 675 7.440523 ACTGTAGCAGTTTTTAGAATGAAGG 57.559 36.000 0.00 0.00 42.59 3.46
675 676 7.224297 ACTGTAGCAGTTTTTAGAATGAAGGA 58.776 34.615 0.00 0.00 42.59 3.36
676 677 7.719633 ACTGTAGCAGTTTTTAGAATGAAGGAA 59.280 33.333 0.00 0.00 42.59 3.36
677 678 8.458573 TGTAGCAGTTTTTAGAATGAAGGAAA 57.541 30.769 0.00 0.00 0.00 3.13
678 679 8.908903 TGTAGCAGTTTTTAGAATGAAGGAAAA 58.091 29.630 0.00 0.00 0.00 2.29
679 680 9.399403 GTAGCAGTTTTTAGAATGAAGGAAAAG 57.601 33.333 0.00 0.00 0.00 2.27
680 681 8.237811 AGCAGTTTTTAGAATGAAGGAAAAGA 57.762 30.769 0.00 0.00 0.00 2.52
681 682 8.695456 AGCAGTTTTTAGAATGAAGGAAAAGAA 58.305 29.630 0.00 0.00 0.00 2.52
682 683 8.972349 GCAGTTTTTAGAATGAAGGAAAAGAAG 58.028 33.333 0.00 0.00 0.00 2.85
688 689 6.734104 AGAATGAAGGAAAAGAAGTGATCG 57.266 37.500 0.00 0.00 0.00 3.69
689 690 6.467677 AGAATGAAGGAAAAGAAGTGATCGA 58.532 36.000 0.00 0.00 0.00 3.59
690 691 6.593382 AGAATGAAGGAAAAGAAGTGATCGAG 59.407 38.462 0.00 0.00 0.00 4.04
691 692 3.997021 TGAAGGAAAAGAAGTGATCGAGC 59.003 43.478 0.00 0.00 0.00 5.03
695 696 0.741221 AAAGAAGTGATCGAGCGGGC 60.741 55.000 0.00 0.00 0.00 6.13
744 746 4.408821 TAGCGTTGCTGGGCCAGG 62.409 66.667 33.43 18.44 40.10 4.45
813 815 4.702131 CCTCAAAATCTTTTCCCATCTCGT 59.298 41.667 0.00 0.00 0.00 4.18
822 824 1.541379 TCCCATCTCGTCGTTTCTCA 58.459 50.000 0.00 0.00 0.00 3.27
825 827 2.668457 CCCATCTCGTCGTTTCTCAAAG 59.332 50.000 0.00 0.00 0.00 2.77
1095 1107 1.830279 TCAAGATCGACGGGTACAGT 58.170 50.000 0.00 0.00 41.13 3.55
1182 1194 2.284331 TGCCTCCGCTTCTACCCA 60.284 61.111 0.00 0.00 35.36 4.51
1223 1235 1.779061 AATGGCTGGGTGTCGGTCTT 61.779 55.000 0.00 0.00 0.00 3.01
1230 1242 1.321074 GGGTGTCGGTCTTCCTCGAT 61.321 60.000 0.00 0.00 37.73 3.59
1340 1358 1.153349 GGCCAAACCCTAGCGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
1350 1368 1.305201 CTAGCGAGAGAGACCTGTCC 58.695 60.000 0.00 0.00 29.52 4.02
1441 1465 1.546476 GAGAGTGGATTGTGGACGACT 59.454 52.381 0.00 0.00 0.00 4.18
1504 1538 4.135153 CGCAGGTGGAGGAGGTCG 62.135 72.222 0.00 0.00 0.00 4.79
1514 1548 0.248702 GAGGAGGTCGAGACGAATGC 60.249 60.000 0.00 0.00 37.72 3.56
1557 1598 3.430218 CCGATCCGTTTGATAATCTCAGC 59.570 47.826 0.00 0.00 34.68 4.26
1590 1631 1.222936 CACAGAGGGGGCTGATGTC 59.777 63.158 0.00 0.00 39.20 3.06
1746 1787 1.271271 CCTGCTGCTTTCAGAGGACTT 60.271 52.381 0.00 0.00 42.95 3.01
1769 1810 8.160106 ACTTCTTCACTTCATCTACAAGGATTT 58.840 33.333 0.00 0.00 0.00 2.17
2105 2152 6.017933 CAGCTAAGAGTCGCAAAATTTAGTG 58.982 40.000 0.00 0.00 0.00 2.74
2238 2699 7.265673 TGTTCTGCTCTGTTATATGAACCTAC 58.734 38.462 0.00 0.00 33.57 3.18
2347 2820 2.886523 TCATTTCCCAAAGCAGTGAGTG 59.113 45.455 0.00 0.00 0.00 3.51
2372 2845 4.531357 ATCTTCCATGACCACATCCATT 57.469 40.909 0.00 0.00 34.15 3.16
2551 3037 8.792633 TGTTCCAACCTGAATATTTAGTTTCAG 58.207 33.333 6.50 5.83 45.40 3.02
2567 3053 8.514330 TTAGTTTCAGTTTTGTTACCAGATGT 57.486 30.769 0.00 0.00 0.00 3.06
2796 3304 6.406692 TGTGGAATAGGTAGCAGATTAGTC 57.593 41.667 0.00 0.00 0.00 2.59
2889 3397 7.450074 TGTGCTCTTAGTGGAGAAATTTTCTA 58.550 34.615 11.55 0.00 40.87 2.10
2920 3428 1.722636 GCCTTGAGCCTGCATGCTAC 61.723 60.000 20.33 10.75 42.95 3.58
2921 3429 0.107312 CCTTGAGCCTGCATGCTACT 60.107 55.000 20.33 13.12 42.95 2.57
2922 3430 1.297664 CTTGAGCCTGCATGCTACTC 58.702 55.000 20.33 20.78 42.95 2.59
2923 3431 0.107508 TTGAGCCTGCATGCTACTCC 60.108 55.000 20.33 5.03 42.95 3.85
2924 3432 1.227793 GAGCCTGCATGCTACTCCC 60.228 63.158 20.33 0.06 42.95 4.30
2925 3433 1.692042 AGCCTGCATGCTACTCCCT 60.692 57.895 20.33 3.81 40.56 4.20
2926 3434 1.227793 GCCTGCATGCTACTCCCTC 60.228 63.158 20.33 0.00 0.00 4.30
2927 3435 1.449353 CCTGCATGCTACTCCCTCC 59.551 63.158 20.33 0.00 0.00 4.30
2928 3436 1.068753 CTGCATGCTACTCCCTCCG 59.931 63.158 20.33 0.00 0.00 4.63
2929 3437 1.680522 CTGCATGCTACTCCCTCCGT 61.681 60.000 20.33 0.00 0.00 4.69
2930 3438 1.068250 GCATGCTACTCCCTCCGTC 59.932 63.158 11.37 0.00 0.00 4.79
2931 3439 1.742768 CATGCTACTCCCTCCGTCC 59.257 63.158 0.00 0.00 0.00 4.79
2932 3440 1.457831 ATGCTACTCCCTCCGTCCC 60.458 63.158 0.00 0.00 0.00 4.46
2933 3441 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
2934 3442 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
2935 3443 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
2936 3444 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
2937 3445 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
2938 3446 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
2939 3447 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2940 3448 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2941 3449 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2942 3450 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2943 3451 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2944 3452 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2945 3453 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2946 3454 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2947 3455 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2948 3456 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2949 3457 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2950 3458 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2951 3459 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2993 3501 7.989416 AAAAACGTTCTTATATTCTGGGACA 57.011 32.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.414700 GTGGCGAACAGTGAGCGG 61.415 66.667 0.00 0.00 0.00 5.52
15 16 3.414700 GGTGGCGAACAGTGAGCG 61.415 66.667 0.00 0.59 0.00 5.03
16 17 3.414700 CGGTGGCGAACAGTGAGC 61.415 66.667 0.00 0.00 0.00 4.26
17 18 3.414700 GCGGTGGCGAACAGTGAG 61.415 66.667 0.00 0.00 0.00 3.51
18 19 4.980805 GGCGGTGGCGAACAGTGA 62.981 66.667 0.00 0.00 41.24 3.41
19 20 4.988598 AGGCGGTGGCGAACAGTG 62.989 66.667 0.00 0.00 41.24 3.66
20 21 4.988598 CAGGCGGTGGCGAACAGT 62.989 66.667 0.00 0.00 41.24 3.55
54 55 4.301027 GATAGGGGAGGTGGCGCG 62.301 72.222 0.00 0.00 0.00 6.86
55 56 4.301027 CGATAGGGGAGGTGGCGC 62.301 72.222 0.00 0.00 0.00 6.53
56 57 4.301027 GCGATAGGGGAGGTGGCG 62.301 72.222 0.00 0.00 0.00 5.69
57 58 3.942439 GGCGATAGGGGAGGTGGC 61.942 72.222 0.00 0.00 0.00 5.01
58 59 3.242291 GGGCGATAGGGGAGGTGG 61.242 72.222 0.00 0.00 0.00 4.61
59 60 3.242291 GGGGCGATAGGGGAGGTG 61.242 72.222 0.00 0.00 0.00 4.00
60 61 4.936081 CGGGGCGATAGGGGAGGT 62.936 72.222 0.00 0.00 0.00 3.85
61 62 4.936081 ACGGGGCGATAGGGGAGG 62.936 72.222 0.00 0.00 0.00 4.30
62 63 3.303928 GACGGGGCGATAGGGGAG 61.304 72.222 0.00 0.00 0.00 4.30
66 67 4.647615 CTGCGACGGGGCGATAGG 62.648 72.222 0.00 0.00 35.06 2.57
67 68 3.426117 AACTGCGACGGGGCGATAG 62.426 63.158 0.00 0.00 35.06 2.08
68 69 3.420214 GAACTGCGACGGGGCGATA 62.420 63.158 0.00 0.00 35.06 2.92
69 70 4.814294 GAACTGCGACGGGGCGAT 62.814 66.667 0.00 0.00 35.06 4.58
74 75 4.452733 GAGGGGAACTGCGACGGG 62.453 72.222 0.00 0.00 0.00 5.28
75 76 4.796231 CGAGGGGAACTGCGACGG 62.796 72.222 0.00 0.00 0.00 4.79
93 94 4.929707 GGTTATGGGAGCCGCGGG 62.930 72.222 29.38 8.95 0.00 6.13
124 125 4.516135 GAAACTAAGCGCGGCGGC 62.516 66.667 25.03 15.97 0.00 6.53
125 126 2.813908 AGAAACTAAGCGCGGCGG 60.814 61.111 25.03 9.72 0.00 6.13
126 127 2.395690 CAGAAACTAAGCGCGGCG 59.604 61.111 19.62 19.62 0.00 6.46
127 128 2.098489 GCAGAAACTAAGCGCGGC 59.902 61.111 8.83 0.00 0.00 6.53
128 129 1.696832 GGAGCAGAAACTAAGCGCGG 61.697 60.000 8.83 0.00 0.00 6.46
129 130 1.696832 GGGAGCAGAAACTAAGCGCG 61.697 60.000 0.00 0.00 0.00 6.86
130 131 0.673644 TGGGAGCAGAAACTAAGCGC 60.674 55.000 0.00 0.00 0.00 5.92
131 132 2.029838 ATGGGAGCAGAAACTAAGCG 57.970 50.000 0.00 0.00 0.00 4.68
132 133 3.628032 GGTTATGGGAGCAGAAACTAAGC 59.372 47.826 0.00 0.00 0.00 3.09
133 134 3.871594 CGGTTATGGGAGCAGAAACTAAG 59.128 47.826 0.00 0.00 0.00 2.18
134 135 3.869065 CGGTTATGGGAGCAGAAACTAA 58.131 45.455 0.00 0.00 0.00 2.24
135 136 2.419574 GCGGTTATGGGAGCAGAAACTA 60.420 50.000 0.00 0.00 0.00 2.24
136 137 1.679032 GCGGTTATGGGAGCAGAAACT 60.679 52.381 0.00 0.00 0.00 2.66
137 138 0.733150 GCGGTTATGGGAGCAGAAAC 59.267 55.000 0.00 0.00 0.00 2.78
138 139 0.742990 CGCGGTTATGGGAGCAGAAA 60.743 55.000 0.00 0.00 0.00 2.52
139 140 1.153449 CGCGGTTATGGGAGCAGAA 60.153 57.895 0.00 0.00 0.00 3.02
140 141 2.499205 CGCGGTTATGGGAGCAGA 59.501 61.111 0.00 0.00 0.00 4.26
141 142 3.272334 GCGCGGTTATGGGAGCAG 61.272 66.667 8.83 0.00 0.00 4.24
144 145 2.960129 GACGCGCGGTTATGGGAG 60.960 66.667 35.22 1.83 0.00 4.30
145 146 4.858433 CGACGCGCGGTTATGGGA 62.858 66.667 35.22 0.00 36.03 4.37
176 177 9.526713 TCATCGAATTTGAAAAATTGTCTTCAA 57.473 25.926 0.00 6.54 39.24 2.69
177 178 9.526713 TTCATCGAATTTGAAAAATTGTCTTCA 57.473 25.926 0.00 0.00 30.44 3.02
178 179 9.783425 GTTCATCGAATTTGAAAAATTGTCTTC 57.217 29.630 0.00 0.00 35.03 2.87
179 180 8.764287 GGTTCATCGAATTTGAAAAATTGTCTT 58.236 29.630 0.00 0.00 35.03 3.01
180 181 8.143835 AGGTTCATCGAATTTGAAAAATTGTCT 58.856 29.630 0.00 0.00 35.03 3.41
181 182 8.298030 AGGTTCATCGAATTTGAAAAATTGTC 57.702 30.769 0.00 0.00 35.03 3.18
182 183 8.661352 AAGGTTCATCGAATTTGAAAAATTGT 57.339 26.923 0.00 0.00 35.03 2.71
183 184 9.934190 AAAAGGTTCATCGAATTTGAAAAATTG 57.066 25.926 0.00 0.00 35.03 2.32
236 237 9.883142 ACATTGAATTTGAAAAGGTTTAGTGAA 57.117 25.926 0.00 0.00 0.00 3.18
288 289 7.604164 CAGTATGTGCTCTTTTTCCTAGAGAAA 59.396 37.037 4.16 0.00 42.82 2.52
289 290 7.099764 CAGTATGTGCTCTTTTTCCTAGAGAA 58.900 38.462 4.16 0.00 41.32 2.87
290 291 6.634805 CAGTATGTGCTCTTTTTCCTAGAGA 58.365 40.000 4.16 0.00 41.32 3.10
291 292 6.900568 CAGTATGTGCTCTTTTTCCTAGAG 57.099 41.667 0.00 0.00 41.64 2.43
306 307 7.893570 AAACAAGTTGGTTTGCTACAGTATGTG 60.894 37.037 7.96 0.00 44.19 3.21
307 308 6.096282 AAACAAGTTGGTTTGCTACAGTATGT 59.904 34.615 7.96 0.00 45.48 2.29
308 309 5.689383 ACAAGTTGGTTTGCTACAGTATG 57.311 39.130 7.96 0.00 46.00 2.39
309 310 6.709018 AAACAAGTTGGTTTGCTACAGTAT 57.291 33.333 7.96 0.00 39.40 2.12
310 311 6.518208 AAAACAAGTTGGTTTGCTACAGTA 57.482 33.333 17.98 0.00 35.67 2.74
311 312 5.400066 AAAACAAGTTGGTTTGCTACAGT 57.600 34.783 17.98 0.00 35.67 3.55
312 313 5.290885 GGAAAAACAAGTTGGTTTGCTACAG 59.709 40.000 21.26 0.00 36.02 2.74
313 314 5.046950 AGGAAAAACAAGTTGGTTTGCTACA 60.047 36.000 21.26 0.00 36.02 2.74
314 315 5.416083 AGGAAAAACAAGTTGGTTTGCTAC 58.584 37.500 21.26 8.06 36.02 3.58
315 316 5.669164 AGGAAAAACAAGTTGGTTTGCTA 57.331 34.783 21.26 0.00 36.02 3.49
316 317 4.551702 AGGAAAAACAAGTTGGTTTGCT 57.448 36.364 21.26 18.97 36.02 3.91
317 318 6.103330 TCTTAGGAAAAACAAGTTGGTTTGC 58.897 36.000 19.29 17.15 36.02 3.68
318 319 7.817478 AGTTCTTAGGAAAAACAAGTTGGTTTG 59.183 33.333 19.29 6.26 36.02 2.93
319 320 7.903145 AGTTCTTAGGAAAAACAAGTTGGTTT 58.097 30.769 13.20 13.20 39.27 3.27
320 321 7.476540 AGTTCTTAGGAAAAACAAGTTGGTT 57.523 32.000 7.96 3.59 32.81 3.67
321 322 8.050930 TCTAGTTCTTAGGAAAAACAAGTTGGT 58.949 33.333 7.96 0.00 32.81 3.67
322 323 8.446599 TCTAGTTCTTAGGAAAAACAAGTTGG 57.553 34.615 7.96 0.00 32.81 3.77
323 324 9.717892 GTTCTAGTTCTTAGGAAAAACAAGTTG 57.282 33.333 0.00 0.00 32.81 3.16
324 325 9.457436 TGTTCTAGTTCTTAGGAAAAACAAGTT 57.543 29.630 0.00 0.00 32.81 2.66
325 326 9.457436 TTGTTCTAGTTCTTAGGAAAAACAAGT 57.543 29.630 11.44 0.00 32.81 3.16
328 329 8.349983 GCATTGTTCTAGTTCTTAGGAAAAACA 58.650 33.333 0.00 0.00 32.81 2.83
329 330 7.808381 GGCATTGTTCTAGTTCTTAGGAAAAAC 59.192 37.037 0.00 0.00 32.81 2.43
330 331 7.039993 GGGCATTGTTCTAGTTCTTAGGAAAAA 60.040 37.037 0.00 0.00 32.81 1.94
331 332 6.433093 GGGCATTGTTCTAGTTCTTAGGAAAA 59.567 38.462 0.00 0.00 32.81 2.29
332 333 5.944007 GGGCATTGTTCTAGTTCTTAGGAAA 59.056 40.000 0.00 0.00 32.81 3.13
333 334 5.497474 GGGCATTGTTCTAGTTCTTAGGAA 58.503 41.667 0.00 0.00 0.00 3.36
334 335 4.382685 CGGGCATTGTTCTAGTTCTTAGGA 60.383 45.833 0.00 0.00 0.00 2.94
335 336 3.871594 CGGGCATTGTTCTAGTTCTTAGG 59.128 47.826 0.00 0.00 0.00 2.69
336 337 4.330074 CACGGGCATTGTTCTAGTTCTTAG 59.670 45.833 0.00 0.00 0.00 2.18
337 338 4.250464 CACGGGCATTGTTCTAGTTCTTA 58.750 43.478 0.00 0.00 0.00 2.10
338 339 3.074412 CACGGGCATTGTTCTAGTTCTT 58.926 45.455 0.00 0.00 0.00 2.52
339 340 2.699954 CACGGGCATTGTTCTAGTTCT 58.300 47.619 0.00 0.00 0.00 3.01
340 341 1.130561 GCACGGGCATTGTTCTAGTTC 59.869 52.381 3.77 0.00 40.72 3.01
341 342 1.165270 GCACGGGCATTGTTCTAGTT 58.835 50.000 3.77 0.00 40.72 2.24
342 343 1.019278 CGCACGGGCATTGTTCTAGT 61.019 55.000 11.77 0.00 41.24 2.57
343 344 1.019278 ACGCACGGGCATTGTTCTAG 61.019 55.000 11.77 0.00 41.24 2.43
344 345 0.604243 AACGCACGGGCATTGTTCTA 60.604 50.000 11.77 0.00 41.24 2.10
345 346 1.896660 AACGCACGGGCATTGTTCT 60.897 52.632 11.77 0.00 41.24 3.01
346 347 1.729131 CAACGCACGGGCATTGTTC 60.729 57.895 10.90 0.00 38.34 3.18
347 348 2.334653 CAACGCACGGGCATTGTT 59.665 55.556 10.90 2.50 38.34 2.83
348 349 4.341502 GCAACGCACGGGCATTGT 62.342 61.111 20.63 0.74 44.58 2.71
349 350 3.837908 TTGCAACGCACGGGCATTG 62.838 57.895 15.24 15.24 45.48 2.82
350 351 3.600694 TTGCAACGCACGGGCATT 61.601 55.556 11.77 0.00 38.71 3.56
351 352 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
361 362 9.216117 ACTAGAATATTTATATCCCGTTGCAAC 57.784 33.333 19.89 19.89 0.00 4.17
386 387 9.953697 TGACAATTAAACCACAAGTTAACATAC 57.046 29.630 8.61 0.00 37.88 2.39
397 398 9.295214 CGCATTATTATTGACAATTAAACCACA 57.705 29.630 5.89 0.00 0.00 4.17
398 399 9.509855 TCGCATTATTATTGACAATTAAACCAC 57.490 29.630 5.89 0.00 0.00 4.16
443 444 9.645128 AGGTAATTCATGGTCATAATTTGATGA 57.355 29.630 0.00 0.00 36.54 2.92
507 508 9.214957 CCTTAATTTACTTTTTGGACCAATTCC 57.785 33.333 7.99 0.00 46.13 3.01
508 509 9.772973 ACCTTAATTTACTTTTTGGACCAATTC 57.227 29.630 7.99 0.00 0.00 2.17
509 510 9.554395 CACCTTAATTTACTTTTTGGACCAATT 57.446 29.630 7.99 0.00 0.00 2.32
510 511 8.929487 TCACCTTAATTTACTTTTTGGACCAAT 58.071 29.630 7.99 0.00 0.00 3.16
511 512 8.307582 TCACCTTAATTTACTTTTTGGACCAA 57.692 30.769 1.69 1.69 0.00 3.67
512 513 7.899648 TCACCTTAATTTACTTTTTGGACCA 57.100 32.000 0.00 0.00 0.00 4.02
513 514 9.203421 CAATCACCTTAATTTACTTTTTGGACC 57.797 33.333 0.00 0.00 0.00 4.46
514 515 9.974980 TCAATCACCTTAATTTACTTTTTGGAC 57.025 29.630 0.00 0.00 0.00 4.02
541 542 9.051679 CGTCCAACTTTTCCATGTATATGATAA 57.948 33.333 0.25 0.00 36.36 1.75
542 543 8.425703 TCGTCCAACTTTTCCATGTATATGATA 58.574 33.333 0.25 0.00 36.36 2.15
543 544 7.279615 TCGTCCAACTTTTCCATGTATATGAT 58.720 34.615 0.25 0.00 36.36 2.45
544 545 6.645306 TCGTCCAACTTTTCCATGTATATGA 58.355 36.000 0.25 0.00 36.36 2.15
545 546 6.918892 TCGTCCAACTTTTCCATGTATATG 57.081 37.500 0.00 0.00 0.00 1.78
546 547 6.542370 CCTTCGTCCAACTTTTCCATGTATAT 59.458 38.462 0.00 0.00 0.00 0.86
547 548 5.878116 CCTTCGTCCAACTTTTCCATGTATA 59.122 40.000 0.00 0.00 0.00 1.47
548 549 4.700213 CCTTCGTCCAACTTTTCCATGTAT 59.300 41.667 0.00 0.00 0.00 2.29
549 550 4.069304 CCTTCGTCCAACTTTTCCATGTA 58.931 43.478 0.00 0.00 0.00 2.29
550 551 2.884639 CCTTCGTCCAACTTTTCCATGT 59.115 45.455 0.00 0.00 0.00 3.21
551 552 2.228822 CCCTTCGTCCAACTTTTCCATG 59.771 50.000 0.00 0.00 0.00 3.66
552 553 2.514803 CCCTTCGTCCAACTTTTCCAT 58.485 47.619 0.00 0.00 0.00 3.41
553 554 1.477923 CCCCTTCGTCCAACTTTTCCA 60.478 52.381 0.00 0.00 0.00 3.53
554 555 1.244816 CCCCTTCGTCCAACTTTTCC 58.755 55.000 0.00 0.00 0.00 3.13
555 556 1.607148 CACCCCTTCGTCCAACTTTTC 59.393 52.381 0.00 0.00 0.00 2.29
556 557 1.687563 CACCCCTTCGTCCAACTTTT 58.312 50.000 0.00 0.00 0.00 2.27
557 558 0.179001 CCACCCCTTCGTCCAACTTT 60.179 55.000 0.00 0.00 0.00 2.66
558 559 1.350310 ACCACCCCTTCGTCCAACTT 61.350 55.000 0.00 0.00 0.00 2.66
559 560 1.350310 AACCACCCCTTCGTCCAACT 61.350 55.000 0.00 0.00 0.00 3.16
560 561 1.149854 AACCACCCCTTCGTCCAAC 59.850 57.895 0.00 0.00 0.00 3.77
561 562 1.149627 CAACCACCCCTTCGTCCAA 59.850 57.895 0.00 0.00 0.00 3.53
562 563 1.346479 TTCAACCACCCCTTCGTCCA 61.346 55.000 0.00 0.00 0.00 4.02
563 564 0.179012 TTTCAACCACCCCTTCGTCC 60.179 55.000 0.00 0.00 0.00 4.79
564 565 1.202722 TCTTTCAACCACCCCTTCGTC 60.203 52.381 0.00 0.00 0.00 4.20
565 566 0.841289 TCTTTCAACCACCCCTTCGT 59.159 50.000 0.00 0.00 0.00 3.85
566 567 1.975660 TTCTTTCAACCACCCCTTCG 58.024 50.000 0.00 0.00 0.00 3.79
567 568 2.628178 CCTTTCTTTCAACCACCCCTTC 59.372 50.000 0.00 0.00 0.00 3.46
568 569 2.023404 ACCTTTCTTTCAACCACCCCTT 60.023 45.455 0.00 0.00 0.00 3.95
569 570 1.573857 ACCTTTCTTTCAACCACCCCT 59.426 47.619 0.00 0.00 0.00 4.79
570 571 1.686587 CACCTTTCTTTCAACCACCCC 59.313 52.381 0.00 0.00 0.00 4.95
571 572 2.661718 TCACCTTTCTTTCAACCACCC 58.338 47.619 0.00 0.00 0.00 4.61
572 573 4.729227 TTTCACCTTTCTTTCAACCACC 57.271 40.909 0.00 0.00 0.00 4.61
573 574 5.049828 CCATTTCACCTTTCTTTCAACCAC 58.950 41.667 0.00 0.00 0.00 4.16
574 575 4.100808 CCCATTTCACCTTTCTTTCAACCA 59.899 41.667 0.00 0.00 0.00 3.67
575 576 4.343814 TCCCATTTCACCTTTCTTTCAACC 59.656 41.667 0.00 0.00 0.00 3.77
576 577 5.529581 TCCCATTTCACCTTTCTTTCAAC 57.470 39.130 0.00 0.00 0.00 3.18
577 578 6.554605 AGATTCCCATTTCACCTTTCTTTCAA 59.445 34.615 0.00 0.00 0.00 2.69
578 579 6.077322 AGATTCCCATTTCACCTTTCTTTCA 58.923 36.000 0.00 0.00 0.00 2.69
579 580 6.596309 AGATTCCCATTTCACCTTTCTTTC 57.404 37.500 0.00 0.00 0.00 2.62
580 581 7.309194 CGTAAGATTCCCATTTCACCTTTCTTT 60.309 37.037 0.00 0.00 43.02 2.52
581 582 6.151144 CGTAAGATTCCCATTTCACCTTTCTT 59.849 38.462 0.00 0.00 43.02 2.52
582 583 5.648092 CGTAAGATTCCCATTTCACCTTTCT 59.352 40.000 0.00 0.00 43.02 2.52
583 584 5.414765 ACGTAAGATTCCCATTTCACCTTTC 59.585 40.000 0.00 0.00 43.62 2.62
584 585 5.321927 ACGTAAGATTCCCATTTCACCTTT 58.678 37.500 0.00 0.00 43.62 3.11
585 586 4.918588 ACGTAAGATTCCCATTTCACCTT 58.081 39.130 0.00 0.00 43.62 3.50
586 587 4.569719 ACGTAAGATTCCCATTTCACCT 57.430 40.909 0.00 0.00 43.62 4.00
587 588 4.941873 AGAACGTAAGATTCCCATTTCACC 59.058 41.667 0.00 0.00 43.62 4.02
588 589 6.496338 AAGAACGTAAGATTCCCATTTCAC 57.504 37.500 0.00 0.00 43.62 3.18
589 590 7.519032 AAAAGAACGTAAGATTCCCATTTCA 57.481 32.000 0.00 0.00 43.62 2.69
590 591 9.902196 TTAAAAAGAACGTAAGATTCCCATTTC 57.098 29.630 0.00 0.00 43.62 2.17
591 592 9.908152 CTTAAAAAGAACGTAAGATTCCCATTT 57.092 29.630 0.00 0.00 43.62 2.32
592 593 9.074576 ACTTAAAAAGAACGTAAGATTCCCATT 57.925 29.630 0.00 0.00 43.62 3.16
593 594 8.631480 ACTTAAAAAGAACGTAAGATTCCCAT 57.369 30.769 0.00 0.00 43.62 4.00
594 595 9.211485 CTACTTAAAAAGAACGTAAGATTCCCA 57.789 33.333 0.00 0.00 43.62 4.37
595 596 9.212641 ACTACTTAAAAAGAACGTAAGATTCCC 57.787 33.333 0.00 0.00 43.62 3.97
618 619 9.932207 CCGTTTTCTCTATCTCTATCTCTACTA 57.068 37.037 0.00 0.00 0.00 1.82
619 620 8.434392 ACCGTTTTCTCTATCTCTATCTCTACT 58.566 37.037 0.00 0.00 0.00 2.57
620 621 8.611654 ACCGTTTTCTCTATCTCTATCTCTAC 57.388 38.462 0.00 0.00 0.00 2.59
621 622 8.430431 TGACCGTTTTCTCTATCTCTATCTCTA 58.570 37.037 0.00 0.00 0.00 2.43
622 623 7.284074 TGACCGTTTTCTCTATCTCTATCTCT 58.716 38.462 0.00 0.00 0.00 3.10
623 624 7.499321 TGACCGTTTTCTCTATCTCTATCTC 57.501 40.000 0.00 0.00 0.00 2.75
624 625 7.883391 TTGACCGTTTTCTCTATCTCTATCT 57.117 36.000 0.00 0.00 0.00 1.98
625 626 9.615295 GTATTGACCGTTTTCTCTATCTCTATC 57.385 37.037 0.00 0.00 0.00 2.08
626 627 9.357161 AGTATTGACCGTTTTCTCTATCTCTAT 57.643 33.333 0.00 0.00 0.00 1.98
627 628 8.622157 CAGTATTGACCGTTTTCTCTATCTCTA 58.378 37.037 0.00 0.00 0.00 2.43
628 629 7.122948 ACAGTATTGACCGTTTTCTCTATCTCT 59.877 37.037 0.00 0.00 0.00 3.10
629 630 7.259161 ACAGTATTGACCGTTTTCTCTATCTC 58.741 38.462 0.00 0.00 0.00 2.75
630 631 7.171630 ACAGTATTGACCGTTTTCTCTATCT 57.828 36.000 0.00 0.00 0.00 1.98
631 632 7.167801 GCTACAGTATTGACCGTTTTCTCTATC 59.832 40.741 0.00 0.00 0.00 2.08
632 633 6.979238 GCTACAGTATTGACCGTTTTCTCTAT 59.021 38.462 0.00 0.00 0.00 1.98
633 634 6.071784 TGCTACAGTATTGACCGTTTTCTCTA 60.072 38.462 0.00 0.00 0.00 2.43
634 635 5.169295 GCTACAGTATTGACCGTTTTCTCT 58.831 41.667 0.00 0.00 0.00 3.10
635 636 4.927425 TGCTACAGTATTGACCGTTTTCTC 59.073 41.667 0.00 0.00 0.00 2.87
636 637 4.890088 TGCTACAGTATTGACCGTTTTCT 58.110 39.130 0.00 0.00 0.00 2.52
637 638 4.689345 ACTGCTACAGTATTGACCGTTTTC 59.311 41.667 0.00 0.00 43.46 2.29
638 639 4.638304 ACTGCTACAGTATTGACCGTTTT 58.362 39.130 0.00 0.00 43.46 2.43
639 640 4.267349 ACTGCTACAGTATTGACCGTTT 57.733 40.909 0.00 0.00 43.46 3.60
640 641 3.955650 ACTGCTACAGTATTGACCGTT 57.044 42.857 0.00 0.00 43.46 4.44
641 642 3.955650 AACTGCTACAGTATTGACCGT 57.044 42.857 0.00 0.00 44.62 4.83
642 643 5.607119 AAAAACTGCTACAGTATTGACCG 57.393 39.130 0.00 0.00 44.62 4.79
643 644 7.900782 TCTAAAAACTGCTACAGTATTGACC 57.099 36.000 0.00 0.00 44.62 4.02
644 645 9.760660 CATTCTAAAAACTGCTACAGTATTGAC 57.239 33.333 0.00 0.00 44.62 3.18
645 646 9.719355 TCATTCTAAAAACTGCTACAGTATTGA 57.281 29.630 0.00 0.00 44.62 2.57
648 649 9.167311 CCTTCATTCTAAAAACTGCTACAGTAT 57.833 33.333 0.00 0.00 44.62 2.12
649 650 8.372459 TCCTTCATTCTAAAAACTGCTACAGTA 58.628 33.333 0.00 0.00 44.62 2.74
651 652 7.672983 TCCTTCATTCTAAAAACTGCTACAG 57.327 36.000 0.00 0.00 37.52 2.74
652 653 8.458573 TTTCCTTCATTCTAAAAACTGCTACA 57.541 30.769 0.00 0.00 0.00 2.74
653 654 9.399403 CTTTTCCTTCATTCTAAAAACTGCTAC 57.601 33.333 0.00 0.00 0.00 3.58
654 655 9.349713 TCTTTTCCTTCATTCTAAAAACTGCTA 57.650 29.630 0.00 0.00 0.00 3.49
655 656 8.237811 TCTTTTCCTTCATTCTAAAAACTGCT 57.762 30.769 0.00 0.00 0.00 4.24
656 657 8.871686 TTCTTTTCCTTCATTCTAAAAACTGC 57.128 30.769 0.00 0.00 0.00 4.40
662 663 8.721478 CGATCACTTCTTTTCCTTCATTCTAAA 58.279 33.333 0.00 0.00 0.00 1.85
663 664 8.094548 TCGATCACTTCTTTTCCTTCATTCTAA 58.905 33.333 0.00 0.00 0.00 2.10
664 665 7.611770 TCGATCACTTCTTTTCCTTCATTCTA 58.388 34.615 0.00 0.00 0.00 2.10
665 666 6.467677 TCGATCACTTCTTTTCCTTCATTCT 58.532 36.000 0.00 0.00 0.00 2.40
666 667 6.674278 GCTCGATCACTTCTTTTCCTTCATTC 60.674 42.308 0.00 0.00 0.00 2.67
667 668 5.123027 GCTCGATCACTTCTTTTCCTTCATT 59.877 40.000 0.00 0.00 0.00 2.57
668 669 4.633565 GCTCGATCACTTCTTTTCCTTCAT 59.366 41.667 0.00 0.00 0.00 2.57
669 670 3.997021 GCTCGATCACTTCTTTTCCTTCA 59.003 43.478 0.00 0.00 0.00 3.02
670 671 3.061429 CGCTCGATCACTTCTTTTCCTTC 59.939 47.826 0.00 0.00 0.00 3.46
671 672 2.996621 CGCTCGATCACTTCTTTTCCTT 59.003 45.455 0.00 0.00 0.00 3.36
672 673 2.611518 CGCTCGATCACTTCTTTTCCT 58.388 47.619 0.00 0.00 0.00 3.36
673 674 1.661112 CCGCTCGATCACTTCTTTTCC 59.339 52.381 0.00 0.00 0.00 3.13
674 675 1.661112 CCCGCTCGATCACTTCTTTTC 59.339 52.381 0.00 0.00 0.00 2.29
675 676 1.726853 CCCGCTCGATCACTTCTTTT 58.273 50.000 0.00 0.00 0.00 2.27
676 677 0.741221 GCCCGCTCGATCACTTCTTT 60.741 55.000 0.00 0.00 0.00 2.52
677 678 1.153549 GCCCGCTCGATCACTTCTT 60.154 57.895 0.00 0.00 0.00 2.52
678 679 2.290122 CTGCCCGCTCGATCACTTCT 62.290 60.000 0.00 0.00 0.00 2.85
679 680 1.880340 CTGCCCGCTCGATCACTTC 60.880 63.158 0.00 0.00 0.00 3.01
680 681 2.185350 CTGCCCGCTCGATCACTT 59.815 61.111 0.00 0.00 0.00 3.16
681 682 4.521062 GCTGCCCGCTCGATCACT 62.521 66.667 0.00 0.00 35.14 3.41
716 717 2.742372 AACGCTAGCTGCCCGTTG 60.742 61.111 13.93 0.00 42.76 4.10
717 718 2.742372 CAACGCTAGCTGCCCGTT 60.742 61.111 13.93 14.66 44.92 4.44
727 729 4.408821 CCTGGCCCAGCAACGCTA 62.409 66.667 4.81 0.00 36.40 4.26
744 746 3.332493 CTGTGTCGCTTGCATGGGC 62.332 63.158 11.33 7.68 41.68 5.36
745 747 2.872557 CTGTGTCGCTTGCATGGG 59.127 61.111 10.06 10.06 0.00 4.00
746 748 2.177531 GCTGTGTCGCTTGCATGG 59.822 61.111 1.34 0.00 0.00 3.66
787 789 2.901291 TGGGAAAAGATTTTGAGGGGG 58.099 47.619 0.00 0.00 0.00 5.40
788 790 4.356436 AGATGGGAAAAGATTTTGAGGGG 58.644 43.478 0.00 0.00 0.00 4.79
789 791 4.096984 CGAGATGGGAAAAGATTTTGAGGG 59.903 45.833 0.00 0.00 0.00 4.30
792 794 4.391830 CGACGAGATGGGAAAAGATTTTGA 59.608 41.667 0.00 0.00 0.00 2.69
798 800 3.006537 AGAAACGACGAGATGGGAAAAGA 59.993 43.478 0.00 0.00 0.00 2.52
799 801 3.326747 AGAAACGACGAGATGGGAAAAG 58.673 45.455 0.00 0.00 0.00 2.27
803 805 1.541379 TGAGAAACGACGAGATGGGA 58.459 50.000 0.00 0.00 0.00 4.37
822 824 6.499106 AGATGGGGAATTTTGTGTTTCTTT 57.501 33.333 0.00 0.00 0.00 2.52
825 827 4.485163 CGAGATGGGGAATTTTGTGTTTC 58.515 43.478 0.00 0.00 0.00 2.78
831 833 0.381801 CGGCGAGATGGGGAATTTTG 59.618 55.000 0.00 0.00 0.00 2.44
1095 1107 4.020617 CCGAAGCCCCTGTGCAGA 62.021 66.667 0.02 0.00 0.00 4.26
1182 1194 1.371558 GTCTTCCCTGTTGCCGTCT 59.628 57.895 0.00 0.00 0.00 4.18
1230 1242 0.596577 CCGTGTTCTCGGTCTTGAGA 59.403 55.000 5.33 0.00 44.77 3.27
1336 1354 3.060602 CAAAAACGGACAGGTCTCTCTC 58.939 50.000 0.00 0.00 0.00 3.20
1340 1358 2.287103 GTGTCAAAAACGGACAGGTCTC 59.713 50.000 0.00 0.00 45.21 3.36
1350 1368 0.727970 TGTCACGGGTGTCAAAAACG 59.272 50.000 0.00 0.00 0.00 3.60
1467 1491 2.087646 GCCTCCTTGAACTTGATCACC 58.912 52.381 0.00 0.00 0.00 4.02
1502 1536 0.109272 GACCACAGCATTCGTCTCGA 60.109 55.000 0.00 0.00 0.00 4.04
1504 1538 0.037326 TGGACCACAGCATTCGTCTC 60.037 55.000 0.00 0.00 0.00 3.36
1514 1548 3.357079 GCGGCACTTGGACCACAG 61.357 66.667 0.00 0.00 0.00 3.66
1541 1582 4.585364 CAAGCTGCTGAGATTATCAAACG 58.415 43.478 1.35 0.00 37.52 3.60
1557 1598 3.060615 GTGGCCTCCAGCAAGCTG 61.061 66.667 14.91 14.91 46.50 4.24
1590 1631 4.458295 ACCTCATGCTTCACATTGAAAGAG 59.542 41.667 7.45 0.00 36.64 2.85
1746 1787 7.453393 ACAAATCCTTGTAGATGAAGTGAAGA 58.547 34.615 0.00 0.00 44.14 2.87
1769 1810 0.178767 CTCATCCATCGGAGGCAACA 59.821 55.000 0.00 0.00 34.05 3.33
1827 1868 1.186200 ACCTATCTGCAGCGACAAGA 58.814 50.000 9.47 0.00 0.00 3.02
2105 2152 3.871006 TCATGTTAATCCACGATCAGCAC 59.129 43.478 0.00 0.00 0.00 4.40
2298 2767 7.158021 TGGGCACATAAAAGGAAAAACATAAG 58.842 34.615 0.00 0.00 0.00 1.73
2347 2820 4.101585 TGGATGTGGTCATGGAAGATAGTC 59.898 45.833 0.00 0.00 34.06 2.59
2574 3060 5.337250 GGTTTTACCAGCCTCCAAATAAAGG 60.337 44.000 0.00 0.00 38.42 3.11
2796 3304 1.740025 GAAAAGATCACAAGAGGGGCG 59.260 52.381 0.00 0.00 0.00 6.13
2889 3397 1.753073 GCTCAAGGCCAGTGCATTTAT 59.247 47.619 5.01 0.00 39.97 1.40
2920 3428 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2921 3429 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2922 3430 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2923 3431 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2924 3432 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2925 3433 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2926 3434 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2927 3435 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2969 3477 7.881232 TCTGTCCCAGAATATAAGAACGTTTTT 59.119 33.333 9.22 9.22 37.57 1.94
2970 3478 7.391620 TCTGTCCCAGAATATAAGAACGTTTT 58.608 34.615 0.46 0.00 37.57 2.43
2971 3479 6.942976 TCTGTCCCAGAATATAAGAACGTTT 58.057 36.000 0.46 0.00 37.57 3.60
2972 3480 6.407074 CCTCTGTCCCAGAATATAAGAACGTT 60.407 42.308 0.00 0.00 40.18 3.99
2973 3481 5.069251 CCTCTGTCCCAGAATATAAGAACGT 59.931 44.000 0.00 0.00 40.18 3.99
2974 3482 5.509840 CCCTCTGTCCCAGAATATAAGAACG 60.510 48.000 0.00 0.00 40.18 3.95
2975 3483 5.602978 TCCCTCTGTCCCAGAATATAAGAAC 59.397 44.000 0.00 0.00 40.18 3.01
2976 3484 5.788430 TCCCTCTGTCCCAGAATATAAGAA 58.212 41.667 0.00 0.00 40.18 2.52
2977 3485 5.103043 ACTCCCTCTGTCCCAGAATATAAGA 60.103 44.000 0.00 0.00 40.18 2.10
2978 3486 5.151454 ACTCCCTCTGTCCCAGAATATAAG 58.849 45.833 0.00 0.00 40.18 1.73
2979 3487 5.157770 ACTCCCTCTGTCCCAGAATATAA 57.842 43.478 0.00 0.00 40.18 0.98
2980 3488 4.834406 ACTCCCTCTGTCCCAGAATATA 57.166 45.455 0.00 0.00 40.18 0.86
2981 3489 3.715648 ACTCCCTCTGTCCCAGAATAT 57.284 47.619 0.00 0.00 40.18 1.28
2982 3490 4.078571 ACATACTCCCTCTGTCCCAGAATA 60.079 45.833 0.00 0.00 40.18 1.75
2983 3491 3.310954 ACATACTCCCTCTGTCCCAGAAT 60.311 47.826 0.00 0.00 40.18 2.40
2984 3492 2.044492 ACATACTCCCTCTGTCCCAGAA 59.956 50.000 0.00 0.00 40.18 3.02
2985 3493 1.646447 ACATACTCCCTCTGTCCCAGA 59.354 52.381 0.00 0.00 38.25 3.86
2986 3494 2.166907 ACATACTCCCTCTGTCCCAG 57.833 55.000 0.00 0.00 0.00 4.45
2987 3495 2.642171 AACATACTCCCTCTGTCCCA 57.358 50.000 0.00 0.00 0.00 4.37
2988 3496 3.371965 TGTAACATACTCCCTCTGTCCC 58.628 50.000 0.00 0.00 0.00 4.46
2989 3497 4.710375 TCTTGTAACATACTCCCTCTGTCC 59.290 45.833 0.00 0.00 0.00 4.02
2990 3498 5.916661 TCTTGTAACATACTCCCTCTGTC 57.083 43.478 0.00 0.00 0.00 3.51
2991 3499 5.395768 GCATCTTGTAACATACTCCCTCTGT 60.396 44.000 0.00 0.00 0.00 3.41
2992 3500 5.053145 GCATCTTGTAACATACTCCCTCTG 58.947 45.833 0.00 0.00 0.00 3.35
2993 3501 4.965532 AGCATCTTGTAACATACTCCCTCT 59.034 41.667 0.00 0.00 0.00 3.69
2994 3502 5.283457 AGCATCTTGTAACATACTCCCTC 57.717 43.478 0.00 0.00 0.00 4.30
2995 3503 5.700402 AAGCATCTTGTAACATACTCCCT 57.300 39.130 0.00 0.00 0.00 4.20
2996 3504 8.451908 AAATAAGCATCTTGTAACATACTCCC 57.548 34.615 0.00 0.00 0.00 4.30
2997 3505 9.331282 AGAAATAAGCATCTTGTAACATACTCC 57.669 33.333 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.