Multiple sequence alignment - TraesCS7D01G499500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G499500 chr7D 100.000 5888 0 0 1 5888 605907351 605913238 0.000000e+00 10874.0
1 TraesCS7D01G499500 chr7D 88.264 1619 130 35 3606 5170 605866729 605868341 0.000000e+00 1882.0
2 TraesCS7D01G499500 chr7D 83.313 1630 203 55 3530 5127 605746217 605747809 0.000000e+00 1439.0
3 TraesCS7D01G499500 chr7D 85.323 1131 131 26 4051 5160 605832684 605833800 0.000000e+00 1136.0
4 TraesCS7D01G499500 chr7D 84.565 609 63 18 2612 3201 605863294 605863890 5.480000e-160 575.0
5 TraesCS7D01G499500 chr7D 85.128 585 53 23 923 1488 605830075 605830644 9.160000e-158 568.0
6 TraesCS7D01G499500 chr7D 90.146 274 19 6 1776 2045 605862022 605862291 3.610000e-92 350.0
7 TraesCS7D01G499500 chr7D 78.793 547 75 24 2725 3236 605753275 605753815 4.710000e-86 329.0
8 TraesCS7D01G499500 chr7D 81.553 412 51 18 2813 3204 605745720 605746126 3.670000e-82 316.0
9 TraesCS7D01G499500 chr7D 93.532 201 13 0 1775 1975 605752386 605752586 3.690000e-77 300.0
10 TraesCS7D01G499500 chr7D 94.118 153 9 0 2174 2326 605831172 605831324 3.800000e-57 233.0
11 TraesCS7D01G499500 chr7D 93.464 153 10 0 2174 2326 605752728 605752880 1.770000e-55 228.0
12 TraesCS7D01G499500 chr7D 87.234 188 17 3 3339 3521 44648366 44648551 2.300000e-49 207.0
13 TraesCS7D01G499500 chr7D 100.000 91 0 0 6209 6299 605913559 605913649 1.090000e-37 169.0
14 TraesCS7D01G499500 chr7D 92.222 90 6 1 3526 3614 605863923 605864012 6.630000e-25 126.0
15 TraesCS7D01G499500 chr7D 91.803 61 5 0 5796 5856 33247200 33247140 1.130000e-12 86.1
16 TraesCS7D01G499500 chr7D 100.000 29 0 0 3309 3337 603768259 603768231 3.000000e-03 54.7
17 TraesCS7D01G499500 chr7A 93.517 3733 158 38 2105 5791 697138853 697142547 0.000000e+00 5476.0
18 TraesCS7D01G499500 chr7A 93.365 2743 127 24 3084 5791 697255457 697258179 0.000000e+00 4006.0
19 TraesCS7D01G499500 chr7A 88.214 1697 135 36 3526 5164 697117025 697118714 0.000000e+00 1965.0
20 TraesCS7D01G499500 chr7A 90.371 1402 80 27 648 2033 697137499 697138861 0.000000e+00 1790.0
21 TraesCS7D01G499500 chr7A 81.565 1828 264 57 3529 5324 697012547 697014333 0.000000e+00 1441.0
22 TraesCS7D01G499500 chr7A 80.685 963 91 50 1037 1984 697108969 697109851 0.000000e+00 660.0
23 TraesCS7D01G499500 chr7A 84.020 607 59 25 2612 3201 697116407 697116992 3.320000e-152 549.0
24 TraesCS7D01G499500 chr7A 86.815 493 47 14 1005 1488 697057656 697058139 9.290000e-148 534.0
25 TraesCS7D01G499500 chr7A 87.647 340 38 3 1237 1574 697005021 697005358 5.920000e-105 392.0
26 TraesCS7D01G499500 chr7A 85.676 377 40 6 304 666 697136976 697137352 9.910000e-103 385.0
27 TraesCS7D01G499500 chr7A 81.140 456 67 9 2056 2503 697113838 697114282 1.300000e-91 348.0
28 TraesCS7D01G499500 chr7A 93.137 204 13 1 1775 1978 697058293 697058495 1.330000e-76 298.0
29 TraesCS7D01G499500 chr7A 84.932 292 36 6 2917 3204 697012209 697012496 7.990000e-74 289.0
30 TraesCS7D01G499500 chr7A 86.702 188 18 5 3339 3521 15772304 15772489 1.070000e-47 202.0
31 TraesCS7D01G499500 chr7A 86.702 188 18 5 3339 3521 15800429 15800614 1.070000e-47 202.0
32 TraesCS7D01G499500 chr7B 91.108 2654 151 47 759 3361 690012622 690015241 0.000000e+00 3515.0
33 TraesCS7D01G499500 chr7B 94.447 1963 62 26 3429 5346 690015282 690017242 0.000000e+00 2977.0
34 TraesCS7D01G499500 chr7B 86.851 1696 144 35 3525 5164 689925512 689927184 0.000000e+00 1823.0
35 TraesCS7D01G499500 chr7B 83.281 1597 177 57 3613 5165 689967610 689969160 0.000000e+00 1387.0
36 TraesCS7D01G499500 chr7B 83.810 1328 158 36 3812 5127 689686371 689687653 0.000000e+00 1208.0
37 TraesCS7D01G499500 chr7B 86.905 840 92 14 4334 5163 689906384 689907215 0.000000e+00 926.0
38 TraesCS7D01G499500 chr7B 93.245 607 35 4 5186 5791 690045441 690046042 0.000000e+00 889.0
39 TraesCS7D01G499500 chr7B 82.197 719 79 25 2510 3201 689924784 689925480 1.970000e-159 573.0
40 TraesCS7D01G499500 chr7B 84.044 633 54 30 888 1488 689903329 689903946 3.300000e-157 566.0
41 TraesCS7D01G499500 chr7B 95.170 352 15 2 5344 5694 690022614 690022964 7.130000e-154 555.0
42 TraesCS7D01G499500 chr7B 83.705 583 57 23 924 1488 689965384 689965946 3.370000e-142 516.0
43 TraesCS7D01G499500 chr7B 82.781 604 58 31 894 1486 689922152 689922720 1.220000e-136 497.0
44 TraesCS7D01G499500 chr7B 82.025 395 48 16 2815 3194 689199568 689199954 1.320000e-81 315.0
45 TraesCS7D01G499500 chr7B 94.527 201 10 1 1775 1975 689966072 689966271 6.130000e-80 309.0
46 TraesCS7D01G499500 chr7B 89.669 242 19 5 1755 1995 689922916 689923152 2.850000e-78 303.0
47 TraesCS7D01G499500 chr7B 87.550 249 24 6 5286 5529 689927474 689927720 1.340000e-71 281.0
48 TraesCS7D01G499500 chr7B 87.059 255 17 8 3525 3776 689905470 689905711 2.240000e-69 274.0
49 TraesCS7D01G499500 chr7B 85.441 261 34 4 1753 2013 689196427 689196683 1.040000e-67 268.0
50 TraesCS7D01G499500 chr7B 79.744 390 58 19 2815 3194 689685612 689685990 4.840000e-66 263.0
51 TraesCS7D01G499500 chr7B 95.302 149 7 0 2178 2326 689904478 689904626 2.940000e-58 237.0
52 TraesCS7D01G499500 chr7B 93.464 153 10 0 2174 2326 689966408 689966560 1.770000e-55 228.0
53 TraesCS7D01G499500 chr7B 89.385 179 15 3 2174 2352 689204371 689204545 8.220000e-54 222.0
54 TraesCS7D01G499500 chr7B 88.827 179 16 3 2174 2352 689696420 689696594 3.820000e-52 217.0
55 TraesCS7D01G499500 chr7B 74.087 575 73 44 175 718 690011893 690012422 3.910000e-37 167.0
56 TraesCS7D01G499500 chr7B 96.078 51 2 0 5741 5791 690023022 690023072 4.050000e-12 84.2
57 TraesCS7D01G499500 chrUn 95.750 400 17 0 4058 4457 478791850 478792249 0.000000e+00 645.0
58 TraesCS7D01G499500 chr5B 89.840 187 12 3 3339 3520 625133371 625133187 3.800000e-57 233.0
59 TraesCS7D01G499500 chr6B 88.770 187 14 3 3339 3520 655773415 655773231 8.220000e-54 222.0
60 TraesCS7D01G499500 chr2B 88.172 186 19 3 3339 3521 775408385 775408570 1.060000e-52 219.0
61 TraesCS7D01G499500 chr2B 88.542 96 9 2 5790 5884 30127569 30127663 1.430000e-21 115.0
62 TraesCS7D01G499500 chr6D 87.027 185 21 3 3339 3520 159380990 159380806 8.280000e-49 206.0
63 TraesCS7D01G499500 chr6D 90.909 121 10 1 2878 2998 282609240 282609359 1.820000e-35 161.0
64 TraesCS7D01G499500 chr1B 93.388 121 7 1 2878 2998 7249433 7249314 1.800000e-40 178.0
65 TraesCS7D01G499500 chr5D 94.624 93 3 2 5796 5887 565757626 565757535 6.580000e-30 143.0
66 TraesCS7D01G499500 chr1A 92.857 98 6 1 5790 5887 558310737 558310833 2.370000e-29 141.0
67 TraesCS7D01G499500 chr3D 87.500 104 10 3 5786 5887 14049266 14049164 3.990000e-22 117.0
68 TraesCS7D01G499500 chr3B 88.542 96 10 1 5790 5884 719880589 719880684 1.430000e-21 115.0
69 TraesCS7D01G499500 chr2A 100.000 31 0 0 3309 3339 19931974 19931944 2.450000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G499500 chr7D 605907351 605913649 6298 False 5521.500000 10874 100.000000 1 6299 2 chr7D.!!$F6 6298
1 TraesCS7D01G499500 chr7D 605745720 605747809 2089 False 877.500000 1439 82.433000 2813 5127 2 chr7D.!!$F2 2314
2 TraesCS7D01G499500 chr7D 605862022 605868341 6319 False 733.250000 1882 88.799250 1776 5170 4 chr7D.!!$F5 3394
3 TraesCS7D01G499500 chr7D 605830075 605833800 3725 False 645.666667 1136 88.189667 923 5160 3 chr7D.!!$F4 4237
4 TraesCS7D01G499500 chr7D 605752386 605753815 1429 False 285.666667 329 88.596333 1775 3236 3 chr7D.!!$F3 1461
5 TraesCS7D01G499500 chr7A 697255457 697258179 2722 False 4006.000000 4006 93.365000 3084 5791 1 chr7A.!!$F4 2707
6 TraesCS7D01G499500 chr7A 697136976 697142547 5571 False 2550.333333 5476 89.854667 304 5791 3 chr7A.!!$F8 5487
7 TraesCS7D01G499500 chr7A 697108969 697118714 9745 False 880.500000 1965 83.514750 1037 5164 4 chr7A.!!$F7 4127
8 TraesCS7D01G499500 chr7A 697012209 697014333 2124 False 865.000000 1441 83.248500 2917 5324 2 chr7A.!!$F5 2407
9 TraesCS7D01G499500 chr7A 697057656 697058495 839 False 416.000000 534 89.976000 1005 1978 2 chr7A.!!$F6 973
10 TraesCS7D01G499500 chr7B 690011893 690017242 5349 False 2219.666667 3515 86.547333 175 5346 3 chr7B.!!$F9 5171
11 TraesCS7D01G499500 chr7B 690045441 690046042 601 False 889.000000 889 93.245000 5186 5791 1 chr7B.!!$F3 605
12 TraesCS7D01G499500 chr7B 689685612 689687653 2041 False 735.500000 1208 81.777000 2815 5127 2 chr7B.!!$F5 2312
13 TraesCS7D01G499500 chr7B 689922152 689927720 5568 False 695.400000 1823 85.809600 894 5529 5 chr7B.!!$F7 4635
14 TraesCS7D01G499500 chr7B 689965384 689969160 3776 False 610.000000 1387 88.744250 924 5165 4 chr7B.!!$F8 4241
15 TraesCS7D01G499500 chr7B 689903329 689907215 3886 False 500.750000 926 88.327500 888 5163 4 chr7B.!!$F6 4275
16 TraesCS7D01G499500 chr7B 689196427 689199954 3527 False 291.500000 315 83.733000 1753 3194 2 chr7B.!!$F4 1441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.033504 TCCTCAGACAAAGTCGCCAC 59.966 55.000 0.00 0.0 37.67 5.01 F
156 157 0.038251 TGTCGCTAGCCAACTGTGAG 60.038 55.000 9.66 0.0 0.00 3.51 F
869 1238 0.547075 AGGCGAGCCAGAGACTAGTA 59.453 55.000 17.18 0.0 38.92 1.82 F
2130 8493 0.108186 TGACGCTGTCATGTGGATCC 60.108 55.000 4.20 4.2 37.67 3.36 F
3342 13065 0.749649 CCCGTCTCTCTCCATCCAAG 59.250 60.000 0.00 0.0 0.00 3.61 F
3836 16373 1.080093 CGTGCGCTTCCCTAGTTCA 60.080 57.895 9.73 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1631 2107 0.179070 TCTGGTGTGCAGTTAACGCA 60.179 50.0 17.24 17.24 36.94 5.24 R
1632 2108 0.234884 GTCTGGTGTGCAGTTAACGC 59.765 55.0 13.26 13.26 0.00 4.84 R
2576 10003 0.463833 GCCATTAAGGTGCCGCTAGT 60.464 55.0 0.00 0.00 40.61 2.57 R
3397 13125 0.652592 CTTCGACGTGGGATTGATGC 59.347 55.0 0.00 0.00 0.00 3.91 R
4276 16984 2.107950 AACCACATGTATGTCACCGG 57.892 50.0 0.00 0.00 39.39 5.28 R
5800 18807 0.107508 CACCCCAGGACTGCATGTAG 60.108 60.0 9.50 9.50 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.363744 GGCATCCTCAGACAAAGTCG 58.636 55.000 0.00 0.00 37.67 4.18
20 21 0.723981 GCATCCTCAGACAAAGTCGC 59.276 55.000 0.00 0.00 37.67 5.19
21 22 1.363744 CATCCTCAGACAAAGTCGCC 58.636 55.000 0.00 0.00 37.67 5.54
22 23 0.976641 ATCCTCAGACAAAGTCGCCA 59.023 50.000 0.00 0.00 37.67 5.69
23 24 0.033504 TCCTCAGACAAAGTCGCCAC 59.966 55.000 0.00 0.00 37.67 5.01
24 25 0.951040 CCTCAGACAAAGTCGCCACC 60.951 60.000 0.00 0.00 37.67 4.61
25 26 1.284982 CTCAGACAAAGTCGCCACCG 61.285 60.000 0.00 0.00 37.67 4.94
26 27 1.300620 CAGACAAAGTCGCCACCGA 60.301 57.895 0.00 0.00 42.01 4.69
34 35 2.795973 TCGCCACCGACGTCATAG 59.204 61.111 17.16 6.02 38.82 2.23
35 36 2.954868 CGCCACCGACGTCATAGC 60.955 66.667 17.16 11.20 36.29 2.97
36 37 2.183300 GCCACCGACGTCATAGCA 59.817 61.111 17.16 0.00 0.00 3.49
37 38 1.227263 GCCACCGACGTCATAGCAT 60.227 57.895 17.16 0.00 0.00 3.79
38 39 1.490693 GCCACCGACGTCATAGCATG 61.491 60.000 17.16 3.78 0.00 4.06
39 40 1.490693 CCACCGACGTCATAGCATGC 61.491 60.000 17.16 10.51 0.00 4.06
40 41 1.588932 ACCGACGTCATAGCATGCG 60.589 57.895 17.16 0.00 36.41 4.73
41 42 1.299089 CCGACGTCATAGCATGCGA 60.299 57.895 17.16 7.70 35.10 5.10
42 43 1.540607 CCGACGTCATAGCATGCGAC 61.541 60.000 17.16 12.76 35.10 5.19
43 44 1.540607 CGACGTCATAGCATGCGACC 61.541 60.000 17.16 1.69 35.10 4.79
44 45 1.540607 GACGTCATAGCATGCGACCG 61.541 60.000 13.01 12.70 35.10 4.79
45 46 2.931386 GTCATAGCATGCGACCGC 59.069 61.111 13.01 7.53 42.35 5.68
46 47 2.280119 TCATAGCATGCGACCGCC 60.280 61.111 13.01 0.00 41.09 6.13
47 48 2.588596 CATAGCATGCGACCGCCA 60.589 61.111 13.01 0.71 41.09 5.69
48 49 2.588877 ATAGCATGCGACCGCCAC 60.589 61.111 13.01 1.39 41.09 5.01
49 50 4.830765 TAGCATGCGACCGCCACC 62.831 66.667 13.01 0.01 41.09 4.61
61 62 3.897122 GCCACCCCAACCACTCCA 61.897 66.667 0.00 0.00 0.00 3.86
62 63 2.115266 CCACCCCAACCACTCCAC 59.885 66.667 0.00 0.00 0.00 4.02
63 64 2.281484 CACCCCAACCACTCCACG 60.281 66.667 0.00 0.00 0.00 4.94
64 65 2.446994 ACCCCAACCACTCCACGA 60.447 61.111 0.00 0.00 0.00 4.35
65 66 2.347490 CCCCAACCACTCCACGAG 59.653 66.667 0.00 0.00 35.52 4.18
66 67 2.214216 CCCCAACCACTCCACGAGA 61.214 63.158 0.00 0.00 33.32 4.04
67 68 1.004918 CCCAACCACTCCACGAGAC 60.005 63.158 0.00 0.00 33.32 3.36
68 69 1.745890 CCAACCACTCCACGAGACA 59.254 57.895 0.00 0.00 33.32 3.41
69 70 0.600255 CCAACCACTCCACGAGACAC 60.600 60.000 0.00 0.00 33.32 3.67
71 72 1.105167 AACCACTCCACGAGACACGA 61.105 55.000 0.00 0.00 45.77 4.35
72 73 1.081376 CCACTCCACGAGACACGAC 60.081 63.158 0.00 0.00 45.77 4.34
73 74 1.652563 CACTCCACGAGACACGACA 59.347 57.895 0.00 0.00 45.77 4.35
74 75 0.241213 CACTCCACGAGACACGACAT 59.759 55.000 0.00 0.00 45.77 3.06
75 76 0.241213 ACTCCACGAGACACGACATG 59.759 55.000 0.00 0.00 45.77 3.21
76 77 0.456824 CTCCACGAGACACGACATGG 60.457 60.000 0.00 0.00 45.77 3.66
77 78 0.891904 TCCACGAGACACGACATGGA 60.892 55.000 0.00 0.00 45.77 3.41
78 79 0.732880 CCACGAGACACGACATGGAC 60.733 60.000 0.00 0.00 45.77 4.02
79 80 0.039527 CACGAGACACGACATGGACA 60.040 55.000 0.00 0.00 45.77 4.02
80 81 0.241213 ACGAGACACGACATGGACAG 59.759 55.000 0.00 0.00 45.77 3.51
81 82 0.521735 CGAGACACGACATGGACAGA 59.478 55.000 0.00 0.00 45.77 3.41
82 83 1.466529 CGAGACACGACATGGACAGAG 60.467 57.143 0.00 0.00 45.77 3.35
83 84 1.813178 GAGACACGACATGGACAGAGA 59.187 52.381 0.00 0.00 0.00 3.10
84 85 1.815613 AGACACGACATGGACAGAGAG 59.184 52.381 0.00 0.00 0.00 3.20
85 86 0.891373 ACACGACATGGACAGAGAGG 59.109 55.000 0.00 0.00 0.00 3.69
86 87 0.459237 CACGACATGGACAGAGAGGC 60.459 60.000 0.00 0.00 0.00 4.70
87 88 0.900182 ACGACATGGACAGAGAGGCA 60.900 55.000 0.00 0.00 0.00 4.75
88 89 0.463204 CGACATGGACAGAGAGGCAT 59.537 55.000 0.00 0.00 0.00 4.40
89 90 1.805495 CGACATGGACAGAGAGGCATG 60.805 57.143 0.00 0.00 0.00 4.06
90 91 1.483827 GACATGGACAGAGAGGCATGA 59.516 52.381 0.00 0.00 0.00 3.07
91 92 1.485480 ACATGGACAGAGAGGCATGAG 59.515 52.381 0.00 0.00 0.00 2.90
92 93 1.761198 CATGGACAGAGAGGCATGAGA 59.239 52.381 0.00 0.00 0.00 3.27
93 94 1.942776 TGGACAGAGAGGCATGAGAA 58.057 50.000 0.00 0.00 0.00 2.87
94 95 1.552337 TGGACAGAGAGGCATGAGAAC 59.448 52.381 0.00 0.00 0.00 3.01
95 96 1.552337 GGACAGAGAGGCATGAGAACA 59.448 52.381 0.00 0.00 0.00 3.18
96 97 2.615869 GACAGAGAGGCATGAGAACAC 58.384 52.381 0.00 0.00 0.00 3.32
97 98 1.067283 ACAGAGAGGCATGAGAACACG 60.067 52.381 0.00 0.00 0.00 4.49
98 99 1.067283 CAGAGAGGCATGAGAACACGT 60.067 52.381 0.00 0.00 0.00 4.49
99 100 1.067283 AGAGAGGCATGAGAACACGTG 60.067 52.381 15.48 15.48 0.00 4.49
102 103 3.549467 GCATGAGAACACGTGCGA 58.451 55.556 17.22 0.00 41.72 5.10
103 104 1.417592 GCATGAGAACACGTGCGAG 59.582 57.895 17.22 0.00 41.72 5.03
104 105 1.959899 GCATGAGAACACGTGCGAGG 61.960 60.000 17.22 0.00 41.72 4.63
105 106 1.079819 ATGAGAACACGTGCGAGGG 60.080 57.895 17.22 0.00 0.00 4.30
106 107 2.432628 GAGAACACGTGCGAGGGG 60.433 66.667 17.22 0.00 0.00 4.79
107 108 4.681978 AGAACACGTGCGAGGGGC 62.682 66.667 17.22 0.00 43.96 5.80
122 123 3.615709 GGCAACCAACCCCTGCAC 61.616 66.667 0.00 0.00 37.83 4.57
123 124 2.521708 GCAACCAACCCCTGCACT 60.522 61.111 0.00 0.00 36.09 4.40
124 125 1.228429 GCAACCAACCCCTGCACTA 60.228 57.895 0.00 0.00 36.09 2.74
125 126 1.244019 GCAACCAACCCCTGCACTAG 61.244 60.000 0.00 0.00 36.09 2.57
126 127 0.110486 CAACCAACCCCTGCACTAGT 59.890 55.000 0.00 0.00 0.00 2.57
127 128 1.349688 CAACCAACCCCTGCACTAGTA 59.650 52.381 0.00 0.00 0.00 1.82
128 129 1.276622 ACCAACCCCTGCACTAGTAG 58.723 55.000 0.00 0.00 0.00 2.57
129 130 0.107654 CCAACCCCTGCACTAGTAGC 60.108 60.000 0.00 2.56 0.00 3.58
130 131 0.107654 CAACCCCTGCACTAGTAGCC 60.108 60.000 12.71 0.00 0.00 3.93
131 132 0.546747 AACCCCTGCACTAGTAGCCA 60.547 55.000 12.71 3.22 0.00 4.75
132 133 0.978146 ACCCCTGCACTAGTAGCCAG 60.978 60.000 12.71 10.98 0.00 4.85
133 134 1.144936 CCCTGCACTAGTAGCCAGC 59.855 63.158 12.71 7.60 0.00 4.85
134 135 1.617018 CCCTGCACTAGTAGCCAGCA 61.617 60.000 12.71 11.02 0.00 4.41
135 136 0.460987 CCTGCACTAGTAGCCAGCAC 60.461 60.000 12.71 0.00 0.00 4.40
136 137 0.247460 CTGCACTAGTAGCCAGCACA 59.753 55.000 12.71 0.00 0.00 4.57
137 138 0.904649 TGCACTAGTAGCCAGCACAT 59.095 50.000 12.71 0.00 0.00 3.21
138 139 1.293924 GCACTAGTAGCCAGCACATG 58.706 55.000 0.00 0.00 0.00 3.21
139 140 1.406069 GCACTAGTAGCCAGCACATGT 60.406 52.381 0.00 0.00 0.00 3.21
140 141 2.544685 CACTAGTAGCCAGCACATGTC 58.455 52.381 0.00 0.00 0.00 3.06
141 142 1.135139 ACTAGTAGCCAGCACATGTCG 59.865 52.381 0.00 0.00 0.00 4.35
142 143 0.179111 TAGTAGCCAGCACATGTCGC 60.179 55.000 11.00 11.00 0.00 5.19
143 144 1.448540 GTAGCCAGCACATGTCGCT 60.449 57.895 14.55 14.55 41.47 4.93
144 145 0.179111 GTAGCCAGCACATGTCGCTA 60.179 55.000 18.31 13.42 37.72 4.26
145 146 0.103026 TAGCCAGCACATGTCGCTAG 59.897 55.000 18.31 14.02 37.72 3.42
146 147 2.817423 GCCAGCACATGTCGCTAGC 61.817 63.158 18.68 18.68 37.72 3.42
147 148 2.176273 CCAGCACATGTCGCTAGCC 61.176 63.158 18.31 0.00 37.72 3.93
148 149 1.448365 CAGCACATGTCGCTAGCCA 60.448 57.895 18.31 2.16 37.72 4.75
149 150 1.020861 CAGCACATGTCGCTAGCCAA 61.021 55.000 18.31 0.00 37.72 4.52
150 151 1.021390 AGCACATGTCGCTAGCCAAC 61.021 55.000 17.58 8.54 38.15 3.77
151 152 1.021390 GCACATGTCGCTAGCCAACT 61.021 55.000 9.66 0.00 0.00 3.16
152 153 0.723414 CACATGTCGCTAGCCAACTG 59.277 55.000 9.66 10.06 0.00 3.16
153 154 0.321671 ACATGTCGCTAGCCAACTGT 59.678 50.000 9.66 10.61 0.00 3.55
154 155 0.723414 CATGTCGCTAGCCAACTGTG 59.277 55.000 9.66 7.60 0.00 3.66
155 156 0.608130 ATGTCGCTAGCCAACTGTGA 59.392 50.000 9.66 0.00 0.00 3.58
156 157 0.038251 TGTCGCTAGCCAACTGTGAG 60.038 55.000 9.66 0.00 0.00 3.51
157 158 1.079819 TCGCTAGCCAACTGTGAGC 60.080 57.895 9.66 0.00 0.00 4.26
158 159 2.103042 CGCTAGCCAACTGTGAGCC 61.103 63.158 9.66 0.00 0.00 4.70
159 160 1.003355 GCTAGCCAACTGTGAGCCA 60.003 57.895 2.29 0.00 0.00 4.75
160 161 0.606401 GCTAGCCAACTGTGAGCCAA 60.606 55.000 2.29 0.00 0.00 4.52
161 162 1.160137 CTAGCCAACTGTGAGCCAAC 58.840 55.000 0.00 0.00 0.00 3.77
162 163 0.602638 TAGCCAACTGTGAGCCAACG 60.603 55.000 0.00 0.00 0.00 4.10
163 164 2.639286 CCAACTGTGAGCCAACGC 59.361 61.111 0.00 0.00 0.00 4.84
185 186 4.100189 GCTACCATATGTTCTGGACACTCT 59.900 45.833 1.24 0.00 42.04 3.24
187 188 5.860941 ACCATATGTTCTGGACACTCTAG 57.139 43.478 1.24 0.00 42.04 2.43
191 192 6.493115 CCATATGTTCTGGACACTCTAGATCT 59.507 42.308 0.00 0.00 42.04 2.75
196 197 4.951254 TCTGGACACTCTAGATCTAGACG 58.049 47.826 25.54 21.93 37.28 4.18
201 202 3.968649 ACACTCTAGATCTAGACGAGGGA 59.031 47.826 25.54 6.86 37.28 4.20
222 223 2.140792 CCCCATAGTAGCCGGCACT 61.141 63.158 31.54 28.72 0.00 4.40
227 228 1.108776 ATAGTAGCCGGCACTTTCGA 58.891 50.000 31.54 14.44 0.00 3.71
229 230 2.098831 GTAGCCGGCACTTTCGACC 61.099 63.158 31.54 0.70 0.00 4.79
239 240 2.966309 CTTTCGACCGCCAAGCACC 61.966 63.158 0.00 0.00 0.00 5.01
248 249 3.953775 CCAAGCACCCACCTCCGT 61.954 66.667 0.00 0.00 0.00 4.69
250 251 4.003788 AAGCACCCACCTCCGTCG 62.004 66.667 0.00 0.00 0.00 5.12
254 255 4.371417 ACCCACCTCCGTCGGCTA 62.371 66.667 6.34 0.00 0.00 3.93
255 256 2.838225 CCCACCTCCGTCGGCTAT 60.838 66.667 6.34 0.00 0.00 2.97
258 259 2.521224 ACCTCCGTCGGCTATCCC 60.521 66.667 6.34 0.00 0.00 3.85
268 269 2.070650 GGCTATCCCCGACCCACTT 61.071 63.158 0.00 0.00 0.00 3.16
270 271 1.740285 CTATCCCCGACCCACTTCG 59.260 63.158 0.00 0.00 38.80 3.79
299 300 4.436998 CCACTGTCGAGGGCCGTC 62.437 72.222 15.66 15.66 39.75 4.79
300 301 4.778415 CACTGTCGAGGGCCGTCG 62.778 72.222 35.79 35.79 41.51 5.12
302 303 4.778415 CTGTCGAGGGCCGTCGTG 62.778 72.222 38.08 27.07 40.93 4.35
359 360 3.190874 GAGGAGATCGTCATTGTCAACC 58.809 50.000 0.00 0.00 0.00 3.77
360 361 2.834549 AGGAGATCGTCATTGTCAACCT 59.165 45.455 0.00 0.00 0.00 3.50
368 369 2.821969 GTCATTGTCAACCTGATGCCTT 59.178 45.455 0.00 0.00 0.00 4.35
467 473 3.776781 CACCCCGCACCGTCCATA 61.777 66.667 0.00 0.00 0.00 2.74
468 474 3.467226 ACCCCGCACCGTCCATAG 61.467 66.667 0.00 0.00 0.00 2.23
478 484 1.414181 ACCGTCCATAGGCAAGATCTG 59.586 52.381 0.00 0.00 0.00 2.90
498 504 1.003051 ACCCCGCCCTCTTAGACAT 59.997 57.895 0.00 0.00 0.00 3.06
582 618 1.887242 GCAGCCACAACAGACGACA 60.887 57.895 0.00 0.00 0.00 4.35
645 681 1.229951 ACCTGATGAAGAGGGCCCA 60.230 57.895 27.56 1.75 34.56 5.36
762 1125 1.688735 CCAGCCATCGAATGAGGTAGA 59.311 52.381 0.00 0.00 0.00 2.59
869 1238 0.547075 AGGCGAGCCAGAGACTAGTA 59.453 55.000 17.18 0.00 38.92 1.82
870 1239 1.144093 AGGCGAGCCAGAGACTAGTAT 59.856 52.381 17.18 0.00 38.92 2.12
871 1240 2.372504 AGGCGAGCCAGAGACTAGTATA 59.627 50.000 17.18 0.00 38.92 1.47
979 1364 4.602259 ACCACACCACACGAGCGG 62.602 66.667 0.00 0.00 0.00 5.52
1628 2104 2.345341 CGAAAAATCCAAAGGCGATTGC 59.655 45.455 0.00 0.00 41.71 3.56
1629 2105 1.994916 AAAATCCAAAGGCGATTGCG 58.005 45.000 0.00 0.00 44.10 4.85
1630 2106 0.887933 AAATCCAAAGGCGATTGCGT 59.112 45.000 0.00 0.00 44.10 5.24
1684 2167 5.154222 GCTGTTGTTTTAGCATTGGTAGTC 58.846 41.667 0.00 0.00 39.67 2.59
1979 2504 3.491104 CGGCAGTAAGTCCCTCACTAATC 60.491 52.174 0.00 0.00 32.30 1.75
2026 6167 4.830765 GCATGCGACGTGGGGCTA 62.831 66.667 0.00 0.00 0.00 3.93
2045 6190 5.051153 GGCTAGATCTGCCTGTTAGTTTAC 58.949 45.833 21.85 0.00 46.38 2.01
2049 6194 5.735766 AGATCTGCCTGTTAGTTTACTTCC 58.264 41.667 0.00 0.00 0.00 3.46
2053 6198 4.331968 TGCCTGTTAGTTTACTTCCATGG 58.668 43.478 4.97 4.97 0.00 3.66
2062 6845 2.489938 TACTTCCATGGTTGACTGGC 57.510 50.000 12.58 0.00 32.30 4.85
2077 8433 2.280457 GGCTCTGCCGGCTCATAC 60.280 66.667 29.70 13.08 39.62 2.39
2130 8493 0.108186 TGACGCTGTCATGTGGATCC 60.108 55.000 4.20 4.20 37.67 3.36
2429 9326 6.183360 CGGTCAAATTATTGGTCTTGACTCTC 60.183 42.308 12.12 0.00 44.52 3.20
2564 9991 3.118811 AGCATGTCTCTCTTTCCTGTAGC 60.119 47.826 0.00 0.00 0.00 3.58
2576 10003 5.416639 TCTTTCCTGTAGCGTTATCAGTACA 59.583 40.000 0.00 0.00 0.00 2.90
2613 11920 3.153919 TGGCTTTCAGTTGTGGGTTATC 58.846 45.455 0.00 0.00 0.00 1.75
2635 11959 5.698832 TCAATTGGTGATAGCGTTTTTCTG 58.301 37.500 5.42 0.00 0.00 3.02
2862 12334 7.328493 CGAATAAGGTCCTCAATTTTCCAAAAC 59.672 37.037 0.00 0.00 0.00 2.43
3003 12502 4.782691 TGATGGTTGATTAGTCCTTCTCCA 59.217 41.667 0.00 0.00 0.00 3.86
3005 12504 5.165961 TGGTTGATTAGTCCTTCTCCAAG 57.834 43.478 0.00 0.00 0.00 3.61
3086 12600 1.446966 GCAGTCCGAGAGCCTGAAC 60.447 63.158 0.00 0.00 0.00 3.18
3126 12640 1.215647 GTCTGGGACGTGCTCGATT 59.784 57.895 16.04 0.00 40.62 3.34
3144 12663 1.946984 TTACAGGGGATCCAACGACT 58.053 50.000 15.23 0.08 34.83 4.18
3153 12672 1.617947 ATCCAACGACTCAGGGCTCC 61.618 60.000 0.00 0.00 0.00 4.70
3342 13065 0.749649 CCCGTCTCTCTCCATCCAAG 59.250 60.000 0.00 0.00 0.00 3.61
3379 13107 8.094798 TCAAGACTCTGCGTTGTATTAAAAAT 57.905 30.769 0.00 0.00 0.00 1.82
3380 13108 9.210329 TCAAGACTCTGCGTTGTATTAAAAATA 57.790 29.630 0.00 0.00 0.00 1.40
3397 13125 8.964420 TTAAAAATAAAAGATTCTGCGACCTG 57.036 30.769 0.00 0.00 0.00 4.00
3407 13135 3.425422 GCGACCTGCATCAATCCC 58.575 61.111 0.00 0.00 45.45 3.85
3428 13156 5.105228 TCCCACGTCGAAGGACTAAAATATT 60.105 40.000 0.00 0.00 41.16 1.28
3701 16203 7.704472 GTCCAAAAGATCTACTGACATAGACAG 59.296 40.741 0.00 0.00 40.68 3.51
3836 16373 1.080093 CGTGCGCTTCCCTAGTTCA 60.080 57.895 9.73 0.00 0.00 3.18
4002 16702 8.205512 TGCCTGCATTACATTAAATGAATGATT 58.794 29.630 0.00 0.00 46.94 2.57
4278 16986 2.403252 AGGTAAAATCCTGACTGCCG 57.597 50.000 0.00 0.00 36.35 5.69
5237 17994 7.624360 AATTCAGTAACTTGTCACTCAACAA 57.376 32.000 0.00 0.00 37.56 2.83
5336 18338 4.042809 TGAATATTGAACTCGGGGGCATAT 59.957 41.667 0.00 0.00 0.00 1.78
5401 18403 1.878522 GCCCTGTCTATGACGCGTG 60.879 63.158 20.70 0.93 34.95 5.34
5434 18438 2.947652 CACAATCATAGACAGGGGCAAG 59.052 50.000 0.00 0.00 0.00 4.01
5452 18456 4.647424 CAAGGTGTTTTACTTTGCAGGA 57.353 40.909 0.00 0.00 39.15 3.86
5460 18464 6.374333 GTGTTTTACTTTGCAGGAGATATCCA 59.626 38.462 9.50 0.00 0.00 3.41
5637 18644 3.365969 CCGTCTTTGCATTGGAGTAAACC 60.366 47.826 0.00 0.00 0.00 3.27
5704 18711 6.657888 TCGTATCAATAAGTATCGTACGCAA 58.342 36.000 11.24 0.00 34.96 4.85
5706 18713 7.112009 TCGTATCAATAAGTATCGTACGCAAAC 59.888 37.037 11.24 8.30 34.96 2.93
5751 18758 5.195848 ACCCTGCTTCTAACTAGACTACT 57.804 43.478 0.00 0.00 30.81 2.57
5791 18798 3.728864 GCGGTTACAATGTGCAAGATCAG 60.729 47.826 0.00 0.00 0.00 2.90
5792 18799 3.728864 CGGTTACAATGTGCAAGATCAGC 60.729 47.826 0.00 0.00 0.00 4.26
5793 18800 3.419915 GTTACAATGTGCAAGATCAGCG 58.580 45.455 0.00 0.00 33.85 5.18
5794 18801 1.527034 ACAATGTGCAAGATCAGCGT 58.473 45.000 0.00 0.00 33.85 5.07
5795 18802 1.466167 ACAATGTGCAAGATCAGCGTC 59.534 47.619 0.00 0.00 33.85 5.19
5796 18803 0.723414 AATGTGCAAGATCAGCGTCG 59.277 50.000 0.00 0.00 33.85 5.12
5797 18804 1.086067 ATGTGCAAGATCAGCGTCGG 61.086 55.000 0.00 0.00 33.85 4.79
5798 18805 1.446099 GTGCAAGATCAGCGTCGGA 60.446 57.895 0.00 0.00 33.85 4.55
5799 18806 1.153765 TGCAAGATCAGCGTCGGAG 60.154 57.895 0.00 0.00 33.85 4.63
5800 18807 2.520904 GCAAGATCAGCGTCGGAGC 61.521 63.158 0.00 0.00 37.41 4.70
5808 18815 2.202743 GCGTCGGAGCTACATGCA 60.203 61.111 0.00 0.00 45.94 3.96
5809 18816 2.233654 GCGTCGGAGCTACATGCAG 61.234 63.158 0.00 0.00 45.94 4.41
5810 18817 1.139734 CGTCGGAGCTACATGCAGT 59.860 57.895 0.00 0.00 45.94 4.40
5811 18818 0.867753 CGTCGGAGCTACATGCAGTC 60.868 60.000 0.00 0.00 45.94 3.51
5812 18819 0.528684 GTCGGAGCTACATGCAGTCC 60.529 60.000 0.00 0.00 45.94 3.85
5813 18820 0.684479 TCGGAGCTACATGCAGTCCT 60.684 55.000 0.00 0.00 45.94 3.85
5814 18821 0.529337 CGGAGCTACATGCAGTCCTG 60.529 60.000 0.00 0.00 45.94 3.86
5815 18822 0.179062 GGAGCTACATGCAGTCCTGG 60.179 60.000 0.00 0.00 45.94 4.45
5816 18823 0.179062 GAGCTACATGCAGTCCTGGG 60.179 60.000 0.00 0.00 45.94 4.45
5817 18824 1.153086 GCTACATGCAGTCCTGGGG 60.153 63.158 0.00 0.00 42.31 4.96
5818 18825 1.915078 GCTACATGCAGTCCTGGGGT 61.915 60.000 0.00 0.00 42.31 4.95
5819 18826 0.107508 CTACATGCAGTCCTGGGGTG 60.108 60.000 0.00 0.00 0.00 4.61
5820 18827 1.561769 TACATGCAGTCCTGGGGTGG 61.562 60.000 0.00 0.00 0.00 4.61
5821 18828 4.052518 ATGCAGTCCTGGGGTGGC 62.053 66.667 0.00 0.00 0.00 5.01
5824 18831 4.351054 CAGTCCTGGGGTGGCCAC 62.351 72.222 28.57 28.57 0.00 5.01
5845 18852 2.039831 CCCCCAGCCCTAGCCTAA 60.040 66.667 0.00 0.00 41.25 2.69
5846 18853 1.464198 CCCCCAGCCCTAGCCTAAT 60.464 63.158 0.00 0.00 41.25 1.73
5847 18854 1.068352 CCCCCAGCCCTAGCCTAATT 61.068 60.000 0.00 0.00 41.25 1.40
5848 18855 1.742308 CCCCAGCCCTAGCCTAATTA 58.258 55.000 0.00 0.00 41.25 1.40
5849 18856 1.351350 CCCCAGCCCTAGCCTAATTAC 59.649 57.143 0.00 0.00 41.25 1.89
5850 18857 2.339769 CCCAGCCCTAGCCTAATTACT 58.660 52.381 0.00 0.00 41.25 2.24
5851 18858 2.039084 CCCAGCCCTAGCCTAATTACTG 59.961 54.545 0.00 0.00 41.25 2.74
5852 18859 2.972713 CCAGCCCTAGCCTAATTACTGA 59.027 50.000 0.00 0.00 41.25 3.41
5853 18860 3.391296 CCAGCCCTAGCCTAATTACTGAA 59.609 47.826 0.00 0.00 41.25 3.02
5854 18861 4.503991 CCAGCCCTAGCCTAATTACTGAAG 60.504 50.000 0.00 0.00 41.25 3.02
5855 18862 3.648545 AGCCCTAGCCTAATTACTGAAGG 59.351 47.826 0.00 0.00 41.25 3.46
5856 18863 3.244596 GCCCTAGCCTAATTACTGAAGGG 60.245 52.174 11.46 11.46 44.43 3.95
5857 18864 4.232091 CCCTAGCCTAATTACTGAAGGGA 58.768 47.826 10.71 0.00 44.39 4.20
5858 18865 4.284746 CCCTAGCCTAATTACTGAAGGGAG 59.715 50.000 10.71 0.00 44.39 4.30
5859 18866 4.902448 CCTAGCCTAATTACTGAAGGGAGT 59.098 45.833 0.00 0.00 0.00 3.85
5860 18867 5.367060 CCTAGCCTAATTACTGAAGGGAGTT 59.633 44.000 0.00 0.00 0.00 3.01
5861 18868 5.780958 AGCCTAATTACTGAAGGGAGTTT 57.219 39.130 0.00 0.00 0.00 2.66
5862 18869 6.140968 AGCCTAATTACTGAAGGGAGTTTT 57.859 37.500 0.00 0.00 0.00 2.43
5863 18870 6.552932 AGCCTAATTACTGAAGGGAGTTTTT 58.447 36.000 0.00 0.00 0.00 1.94
5886 18893 8.417273 TTTTTGGAGGGTTAAATTAAGGAGAG 57.583 34.615 0.00 0.00 0.00 3.20
5887 18894 5.112129 TGGAGGGTTAAATTAAGGAGAGC 57.888 43.478 0.00 0.00 0.00 4.09
6227 19234 2.065899 AGATCTTCTGCTAGCTCCGT 57.934 50.000 17.23 0.00 0.00 4.69
6228 19235 1.953686 AGATCTTCTGCTAGCTCCGTC 59.046 52.381 17.23 6.77 0.00 4.79
6229 19236 1.678627 GATCTTCTGCTAGCTCCGTCA 59.321 52.381 17.23 0.00 0.00 4.35
6230 19237 0.811915 TCTTCTGCTAGCTCCGTCAC 59.188 55.000 17.23 0.00 0.00 3.67
6231 19238 0.814457 CTTCTGCTAGCTCCGTCACT 59.186 55.000 17.23 0.00 0.00 3.41
6232 19239 0.528017 TTCTGCTAGCTCCGTCACTG 59.472 55.000 17.23 0.00 0.00 3.66
6233 19240 0.322546 TCTGCTAGCTCCGTCACTGA 60.323 55.000 17.23 0.00 0.00 3.41
6234 19241 0.100325 CTGCTAGCTCCGTCACTGAG 59.900 60.000 17.23 0.00 0.00 3.35
6241 19248 1.919918 CTCCGTCACTGAGCAAGATC 58.080 55.000 0.00 0.00 0.00 2.75
6242 19249 1.203287 CTCCGTCACTGAGCAAGATCA 59.797 52.381 0.00 0.00 0.00 2.92
6243 19250 1.618343 TCCGTCACTGAGCAAGATCAA 59.382 47.619 0.00 0.00 0.00 2.57
6244 19251 1.728971 CCGTCACTGAGCAAGATCAAC 59.271 52.381 0.00 0.00 0.00 3.18
6245 19252 1.388093 CGTCACTGAGCAAGATCAACG 59.612 52.381 0.00 0.00 0.00 4.10
6246 19253 1.728971 GTCACTGAGCAAGATCAACGG 59.271 52.381 0.00 0.00 0.00 4.44
6247 19254 0.445436 CACTGAGCAAGATCAACGGC 59.555 55.000 0.00 0.00 0.00 5.68
6248 19255 0.322975 ACTGAGCAAGATCAACGGCT 59.677 50.000 0.00 0.00 36.90 5.52
6249 19256 0.725686 CTGAGCAAGATCAACGGCTG 59.274 55.000 5.36 0.00 35.05 4.85
6250 19257 0.674581 TGAGCAAGATCAACGGCTGG 60.675 55.000 0.00 0.00 35.05 4.85
6251 19258 1.986575 GAGCAAGATCAACGGCTGGC 61.987 60.000 0.00 0.00 35.05 4.85
6252 19259 2.787249 CAAGATCAACGGCTGGCG 59.213 61.111 22.58 22.58 0.00 5.69
6253 19260 1.741401 CAAGATCAACGGCTGGCGA 60.741 57.895 30.58 8.41 0.00 5.54
6254 19261 1.003839 AAGATCAACGGCTGGCGAA 60.004 52.632 30.58 14.77 0.00 4.70
6255 19262 0.605319 AAGATCAACGGCTGGCGAAA 60.605 50.000 30.58 14.42 0.00 3.46
6256 19263 0.605319 AGATCAACGGCTGGCGAAAA 60.605 50.000 30.58 14.06 0.00 2.29
6257 19264 0.179189 GATCAACGGCTGGCGAAAAG 60.179 55.000 30.58 15.34 0.00 2.27
6258 19265 0.605319 ATCAACGGCTGGCGAAAAGA 60.605 50.000 30.58 19.65 0.00 2.52
6259 19266 0.605319 TCAACGGCTGGCGAAAAGAT 60.605 50.000 30.58 3.15 0.00 2.40
6260 19267 1.083489 CAACGGCTGGCGAAAAGATA 58.917 50.000 30.58 0.00 0.00 1.98
6261 19268 1.670811 CAACGGCTGGCGAAAAGATAT 59.329 47.619 30.58 1.49 0.00 1.63
6262 19269 1.299541 ACGGCTGGCGAAAAGATATG 58.700 50.000 30.58 0.00 0.00 1.78
6263 19270 0.040958 CGGCTGGCGAAAAGATATGC 60.041 55.000 19.64 0.00 0.00 3.14
6264 19271 1.024271 GGCTGGCGAAAAGATATGCA 58.976 50.000 0.00 0.00 0.00 3.96
6265 19272 1.002033 GGCTGGCGAAAAGATATGCAG 60.002 52.381 0.00 0.00 0.00 4.41
6266 19273 1.942657 GCTGGCGAAAAGATATGCAGA 59.057 47.619 0.00 0.00 0.00 4.26
6267 19274 2.355756 GCTGGCGAAAAGATATGCAGAA 59.644 45.455 0.00 0.00 0.00 3.02
6268 19275 3.181497 GCTGGCGAAAAGATATGCAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
6269 19276 4.346129 CTGGCGAAAAGATATGCAGAAAC 58.654 43.478 0.00 0.00 0.00 2.78
6270 19277 3.755905 TGGCGAAAAGATATGCAGAAACA 59.244 39.130 0.00 0.00 0.00 2.83
6271 19278 4.398988 TGGCGAAAAGATATGCAGAAACAT 59.601 37.500 0.00 0.00 0.00 2.71
6272 19279 4.972440 GGCGAAAAGATATGCAGAAACATC 59.028 41.667 0.00 0.00 0.00 3.06
6273 19280 5.220931 GGCGAAAAGATATGCAGAAACATCT 60.221 40.000 0.00 0.00 0.00 2.90
6274 19281 5.906285 GCGAAAAGATATGCAGAAACATCTC 59.094 40.000 0.00 0.00 0.00 2.75
6275 19282 6.238320 GCGAAAAGATATGCAGAAACATCTCT 60.238 38.462 0.00 0.00 35.63 3.10
6276 19283 7.678218 GCGAAAAGATATGCAGAAACATCTCTT 60.678 37.037 0.00 0.00 42.18 2.85
6277 19284 7.639072 CGAAAAGATATGCAGAAACATCTCTTG 59.361 37.037 6.08 0.00 40.55 3.02
6278 19285 6.374565 AAGATATGCAGAAACATCTCTTGC 57.625 37.500 0.00 0.00 40.18 4.01
6279 19286 4.510711 AGATATGCAGAAACATCTCTTGCG 59.489 41.667 0.00 0.00 31.50 4.85
6280 19287 2.168326 TGCAGAAACATCTCTTGCGA 57.832 45.000 0.00 0.00 0.00 5.10
6281 19288 2.493035 TGCAGAAACATCTCTTGCGAA 58.507 42.857 0.00 0.00 0.00 4.70
6282 19289 2.877786 TGCAGAAACATCTCTTGCGAAA 59.122 40.909 0.00 0.00 0.00 3.46
6283 19290 3.503363 TGCAGAAACATCTCTTGCGAAAT 59.497 39.130 0.00 0.00 0.00 2.17
6284 19291 4.022935 TGCAGAAACATCTCTTGCGAAATT 60.023 37.500 0.00 0.00 0.00 1.82
6285 19292 4.556523 GCAGAAACATCTCTTGCGAAATTC 59.443 41.667 0.00 0.00 0.00 2.17
6286 19293 4.785055 CAGAAACATCTCTTGCGAAATTCG 59.215 41.667 11.47 11.47 43.89 3.34
6287 19294 4.452455 AGAAACATCTCTTGCGAAATTCGT 59.548 37.500 17.05 0.00 42.81 3.85
6288 19295 3.729526 ACATCTCTTGCGAAATTCGTG 57.270 42.857 17.05 7.70 42.81 4.35
6289 19296 3.325870 ACATCTCTTGCGAAATTCGTGA 58.674 40.909 17.05 11.39 42.81 4.35
6290 19297 3.745975 ACATCTCTTGCGAAATTCGTGAA 59.254 39.130 17.05 9.13 42.81 3.18
6291 19298 4.213270 ACATCTCTTGCGAAATTCGTGAAA 59.787 37.500 17.05 8.37 42.81 2.69
6292 19299 4.389664 TCTCTTGCGAAATTCGTGAAAG 57.610 40.909 17.05 16.40 42.81 2.62
6293 19300 3.186409 TCTCTTGCGAAATTCGTGAAAGG 59.814 43.478 17.05 11.42 42.81 3.11
6294 19301 2.225491 TCTTGCGAAATTCGTGAAAGGG 59.775 45.455 17.05 1.68 42.81 3.95
6295 19302 0.878416 TGCGAAATTCGTGAAAGGGG 59.122 50.000 17.05 0.00 42.81 4.79
6296 19303 0.879090 GCGAAATTCGTGAAAGGGGT 59.121 50.000 17.05 0.00 42.81 4.95
6297 19304 1.401018 GCGAAATTCGTGAAAGGGGTG 60.401 52.381 17.05 0.00 42.81 4.61
6298 19305 1.877443 CGAAATTCGTGAAAGGGGTGT 59.123 47.619 7.29 0.00 34.72 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.723981 GCGACTTTGTCTGAGGATGC 59.276 55.000 0.00 0.00 0.00 3.91
5 6 0.951040 GGTGGCGACTTTGTCTGAGG 60.951 60.000 0.00 0.00 0.00 3.86
6 7 1.284982 CGGTGGCGACTTTGTCTGAG 61.285 60.000 0.00 0.00 0.00 3.35
7 8 1.300620 CGGTGGCGACTTTGTCTGA 60.301 57.895 0.00 0.00 0.00 3.27
8 9 1.300620 TCGGTGGCGACTTTGTCTG 60.301 57.895 0.00 0.00 0.00 3.51
9 10 1.300697 GTCGGTGGCGACTTTGTCT 60.301 57.895 0.00 0.00 36.12 3.41
10 11 2.654912 CGTCGGTGGCGACTTTGTC 61.655 63.158 0.00 0.00 36.81 3.18
11 12 2.660552 CGTCGGTGGCGACTTTGT 60.661 61.111 0.00 0.00 36.81 2.83
12 13 2.654912 GACGTCGGTGGCGACTTTG 61.655 63.158 0.00 0.00 36.81 2.77
13 14 2.355481 GACGTCGGTGGCGACTTT 60.355 61.111 0.00 0.00 36.81 2.66
14 15 1.588824 TATGACGTCGGTGGCGACTT 61.589 55.000 11.62 0.00 36.81 3.01
15 16 1.989966 CTATGACGTCGGTGGCGACT 61.990 60.000 11.62 0.00 36.81 4.18
16 17 1.585521 CTATGACGTCGGTGGCGAC 60.586 63.158 11.62 0.00 35.73 5.19
17 18 2.795973 CTATGACGTCGGTGGCGA 59.204 61.111 11.62 0.00 0.00 5.54
18 19 2.954020 ATGCTATGACGTCGGTGGCG 62.954 60.000 19.06 4.33 0.00 5.69
19 20 1.227263 ATGCTATGACGTCGGTGGC 60.227 57.895 18.05 18.05 0.00 5.01
20 21 1.490693 GCATGCTATGACGTCGGTGG 61.491 60.000 11.37 5.44 0.00 4.61
21 22 1.811217 CGCATGCTATGACGTCGGTG 61.811 60.000 17.13 4.15 0.00 4.94
22 23 1.588932 CGCATGCTATGACGTCGGT 60.589 57.895 17.13 4.73 0.00 4.69
23 24 1.299089 TCGCATGCTATGACGTCGG 60.299 57.895 17.13 4.89 33.62 4.79
24 25 1.540607 GGTCGCATGCTATGACGTCG 61.541 60.000 17.13 0.00 33.45 5.12
25 26 1.540607 CGGTCGCATGCTATGACGTC 61.541 60.000 17.13 9.11 33.45 4.34
26 27 1.588932 CGGTCGCATGCTATGACGT 60.589 57.895 17.13 0.00 33.45 4.34
27 28 2.932083 GCGGTCGCATGCTATGACG 61.932 63.158 17.13 13.49 41.49 4.35
28 29 2.598632 GGCGGTCGCATGCTATGAC 61.599 63.158 17.13 15.23 44.11 3.06
29 30 2.280119 GGCGGTCGCATGCTATGA 60.280 61.111 17.13 2.50 44.11 2.15
30 31 2.588596 TGGCGGTCGCATGCTATG 60.589 61.111 17.13 0.00 44.11 2.23
31 32 2.588877 GTGGCGGTCGCATGCTAT 60.589 61.111 17.13 0.00 44.11 2.97
32 33 4.830765 GGTGGCGGTCGCATGCTA 62.831 66.667 17.13 0.72 44.11 3.49
44 45 3.897122 TGGAGTGGTTGGGGTGGC 61.897 66.667 0.00 0.00 0.00 5.01
45 46 2.115266 GTGGAGTGGTTGGGGTGG 59.885 66.667 0.00 0.00 0.00 4.61
46 47 2.281484 CGTGGAGTGGTTGGGGTG 60.281 66.667 0.00 0.00 0.00 4.61
47 48 2.446994 TCGTGGAGTGGTTGGGGT 60.447 61.111 0.00 0.00 0.00 4.95
48 49 2.214216 TCTCGTGGAGTGGTTGGGG 61.214 63.158 0.00 0.00 0.00 4.96
49 50 1.004918 GTCTCGTGGAGTGGTTGGG 60.005 63.158 0.00 0.00 0.00 4.12
50 51 0.600255 GTGTCTCGTGGAGTGGTTGG 60.600 60.000 0.00 0.00 0.00 3.77
51 52 0.939577 CGTGTCTCGTGGAGTGGTTG 60.940 60.000 0.00 0.00 34.52 3.77
52 53 1.105167 TCGTGTCTCGTGGAGTGGTT 61.105 55.000 0.00 0.00 40.80 3.67
53 54 1.527611 TCGTGTCTCGTGGAGTGGT 60.528 57.895 0.00 0.00 40.80 4.16
54 55 1.081376 GTCGTGTCTCGTGGAGTGG 60.081 63.158 0.00 0.00 40.80 4.00
55 56 0.241213 ATGTCGTGTCTCGTGGAGTG 59.759 55.000 0.00 0.00 40.80 3.51
56 57 0.241213 CATGTCGTGTCTCGTGGAGT 59.759 55.000 0.00 0.00 40.80 3.85
57 58 0.456824 CCATGTCGTGTCTCGTGGAG 60.457 60.000 0.00 0.00 35.95 3.86
58 59 0.891904 TCCATGTCGTGTCTCGTGGA 60.892 55.000 2.50 2.50 39.01 4.02
59 60 0.732880 GTCCATGTCGTGTCTCGTGG 60.733 60.000 0.00 0.00 40.80 4.94
60 61 0.039527 TGTCCATGTCGTGTCTCGTG 60.040 55.000 0.00 0.00 40.80 4.35
61 62 0.241213 CTGTCCATGTCGTGTCTCGT 59.759 55.000 0.00 0.00 40.80 4.18
62 63 0.521735 TCTGTCCATGTCGTGTCTCG 59.478 55.000 0.00 0.00 41.41 4.04
63 64 1.813178 TCTCTGTCCATGTCGTGTCTC 59.187 52.381 0.00 0.00 0.00 3.36
64 65 1.815613 CTCTCTGTCCATGTCGTGTCT 59.184 52.381 0.00 0.00 0.00 3.41
65 66 1.135257 CCTCTCTGTCCATGTCGTGTC 60.135 57.143 0.00 0.00 0.00 3.67
66 67 0.891373 CCTCTCTGTCCATGTCGTGT 59.109 55.000 0.00 0.00 0.00 4.49
67 68 0.459237 GCCTCTCTGTCCATGTCGTG 60.459 60.000 0.00 0.00 0.00 4.35
68 69 0.900182 TGCCTCTCTGTCCATGTCGT 60.900 55.000 0.00 0.00 0.00 4.34
69 70 0.463204 ATGCCTCTCTGTCCATGTCG 59.537 55.000 0.00 0.00 0.00 4.35
70 71 1.483827 TCATGCCTCTCTGTCCATGTC 59.516 52.381 0.00 0.00 37.09 3.06
71 72 1.485480 CTCATGCCTCTCTGTCCATGT 59.515 52.381 0.00 0.00 37.09 3.21
72 73 1.761198 TCTCATGCCTCTCTGTCCATG 59.239 52.381 0.00 0.00 37.11 3.66
73 74 2.170187 GTTCTCATGCCTCTCTGTCCAT 59.830 50.000 0.00 0.00 0.00 3.41
74 75 1.552337 GTTCTCATGCCTCTCTGTCCA 59.448 52.381 0.00 0.00 0.00 4.02
75 76 1.552337 TGTTCTCATGCCTCTCTGTCC 59.448 52.381 0.00 0.00 0.00 4.02
76 77 2.615869 GTGTTCTCATGCCTCTCTGTC 58.384 52.381 0.00 0.00 0.00 3.51
77 78 1.067283 CGTGTTCTCATGCCTCTCTGT 60.067 52.381 0.00 0.00 0.00 3.41
78 79 1.067283 ACGTGTTCTCATGCCTCTCTG 60.067 52.381 0.00 0.00 34.22 3.35
79 80 1.067283 CACGTGTTCTCATGCCTCTCT 60.067 52.381 7.58 0.00 34.22 3.10
80 81 1.354040 CACGTGTTCTCATGCCTCTC 58.646 55.000 7.58 0.00 34.22 3.20
81 82 0.671781 GCACGTGTTCTCATGCCTCT 60.672 55.000 18.38 0.00 34.22 3.69
82 83 1.790387 GCACGTGTTCTCATGCCTC 59.210 57.895 18.38 0.00 34.22 4.70
83 84 2.029288 CGCACGTGTTCTCATGCCT 61.029 57.895 18.38 0.00 34.49 4.75
84 85 1.959899 CTCGCACGTGTTCTCATGCC 61.960 60.000 18.38 0.00 34.49 4.40
85 86 1.417592 CTCGCACGTGTTCTCATGC 59.582 57.895 18.38 0.00 34.22 4.06
86 87 1.354337 CCCTCGCACGTGTTCTCATG 61.354 60.000 18.38 0.00 36.71 3.07
87 88 1.079819 CCCTCGCACGTGTTCTCAT 60.080 57.895 18.38 0.00 0.00 2.90
88 89 2.338620 CCCTCGCACGTGTTCTCA 59.661 61.111 18.38 0.00 0.00 3.27
89 90 2.432628 CCCCTCGCACGTGTTCTC 60.433 66.667 18.38 0.00 0.00 2.87
90 91 4.681978 GCCCCTCGCACGTGTTCT 62.682 66.667 18.38 0.00 37.47 3.01
91 92 4.980805 TGCCCCTCGCACGTGTTC 62.981 66.667 18.38 0.00 44.64 3.18
104 105 4.932105 TGCAGGGGTTGGTTGCCC 62.932 66.667 0.00 0.00 45.35 5.36
105 106 2.706952 TAGTGCAGGGGTTGGTTGCC 62.707 60.000 0.00 0.00 37.03 4.52
106 107 1.228429 TAGTGCAGGGGTTGGTTGC 60.228 57.895 0.00 0.00 38.30 4.17
107 108 0.110486 ACTAGTGCAGGGGTTGGTTG 59.890 55.000 0.00 0.00 0.00 3.77
108 109 1.628846 CTACTAGTGCAGGGGTTGGTT 59.371 52.381 5.39 0.00 0.00 3.67
109 110 1.276622 CTACTAGTGCAGGGGTTGGT 58.723 55.000 5.39 0.00 0.00 3.67
110 111 0.107654 GCTACTAGTGCAGGGGTTGG 60.108 60.000 5.39 0.00 0.00 3.77
111 112 0.107654 GGCTACTAGTGCAGGGGTTG 60.108 60.000 5.39 0.00 0.00 3.77
112 113 0.546747 TGGCTACTAGTGCAGGGGTT 60.547 55.000 5.39 0.00 0.00 4.11
113 114 0.978146 CTGGCTACTAGTGCAGGGGT 60.978 60.000 5.39 0.00 0.00 4.95
114 115 1.826024 CTGGCTACTAGTGCAGGGG 59.174 63.158 5.39 0.00 0.00 4.79
115 116 1.144936 GCTGGCTACTAGTGCAGGG 59.855 63.158 5.39 3.11 0.00 4.45
116 117 0.460987 GTGCTGGCTACTAGTGCAGG 60.461 60.000 5.39 5.29 34.15 4.85
117 118 0.247460 TGTGCTGGCTACTAGTGCAG 59.753 55.000 5.39 8.48 34.15 4.41
118 119 0.904649 ATGTGCTGGCTACTAGTGCA 59.095 50.000 5.39 2.87 0.00 4.57
119 120 1.293924 CATGTGCTGGCTACTAGTGC 58.706 55.000 5.39 7.18 0.00 4.40
120 121 2.544685 GACATGTGCTGGCTACTAGTG 58.455 52.381 1.15 0.00 0.00 2.74
121 122 1.135139 CGACATGTGCTGGCTACTAGT 59.865 52.381 1.15 0.00 0.00 2.57
122 123 1.845266 CGACATGTGCTGGCTACTAG 58.155 55.000 1.15 0.00 0.00 2.57
123 124 0.179111 GCGACATGTGCTGGCTACTA 60.179 55.000 1.15 0.00 0.00 1.82
124 125 1.448540 GCGACATGTGCTGGCTACT 60.449 57.895 1.15 0.00 0.00 2.57
125 126 0.179111 TAGCGACATGTGCTGGCTAC 60.179 55.000 24.18 0.86 43.85 3.58
126 127 0.103026 CTAGCGACATGTGCTGGCTA 59.897 55.000 24.18 18.83 43.85 3.93
127 128 1.153489 CTAGCGACATGTGCTGGCT 60.153 57.895 24.18 18.74 43.85 4.75
128 129 3.403277 CTAGCGACATGTGCTGGC 58.597 61.111 24.18 13.82 43.85 4.85
129 130 2.176273 GGCTAGCGACATGTGCTGG 61.176 63.158 24.18 22.58 43.85 4.85
130 131 1.020861 TTGGCTAGCGACATGTGCTG 61.021 55.000 24.18 17.29 43.85 4.41
131 132 1.021390 GTTGGCTAGCGACATGTGCT 61.021 55.000 21.13 21.13 46.29 4.40
132 133 1.021390 AGTTGGCTAGCGACATGTGC 61.021 55.000 18.47 7.67 0.00 4.57
133 134 0.723414 CAGTTGGCTAGCGACATGTG 59.277 55.000 18.47 7.58 0.00 3.21
134 135 0.321671 ACAGTTGGCTAGCGACATGT 59.678 50.000 18.47 14.07 0.00 3.21
135 136 0.723414 CACAGTTGGCTAGCGACATG 59.277 55.000 18.47 13.53 0.00 3.21
136 137 0.608130 TCACAGTTGGCTAGCGACAT 59.392 50.000 18.47 6.70 0.00 3.06
137 138 0.038251 CTCACAGTTGGCTAGCGACA 60.038 55.000 18.47 6.16 0.00 4.35
138 139 1.355066 GCTCACAGTTGGCTAGCGAC 61.355 60.000 9.00 10.10 0.00 5.19
139 140 1.079819 GCTCACAGTTGGCTAGCGA 60.080 57.895 9.00 0.68 0.00 4.93
140 141 2.103042 GGCTCACAGTTGGCTAGCG 61.103 63.158 9.00 0.00 33.96 4.26
141 142 0.606401 TTGGCTCACAGTTGGCTAGC 60.606 55.000 6.04 6.04 0.00 3.42
142 143 1.160137 GTTGGCTCACAGTTGGCTAG 58.840 55.000 0.00 0.00 0.00 3.42
143 144 0.602638 CGTTGGCTCACAGTTGGCTA 60.603 55.000 0.00 0.00 0.00 3.93
144 145 1.893808 CGTTGGCTCACAGTTGGCT 60.894 57.895 0.00 0.00 0.00 4.75
145 146 2.639286 CGTTGGCTCACAGTTGGC 59.361 61.111 0.00 0.00 0.00 4.52
146 147 2.639286 GCGTTGGCTCACAGTTGG 59.361 61.111 0.00 0.00 35.83 3.77
156 157 2.287915 CAGAACATATGGTAGCGTTGGC 59.712 50.000 7.80 0.00 40.37 4.52
157 158 2.872245 CCAGAACATATGGTAGCGTTGG 59.128 50.000 7.80 0.99 32.85 3.77
158 159 3.555956 GTCCAGAACATATGGTAGCGTTG 59.444 47.826 7.80 0.00 39.01 4.10
159 160 3.196901 TGTCCAGAACATATGGTAGCGTT 59.803 43.478 7.80 0.00 39.01 4.84
160 161 2.764010 TGTCCAGAACATATGGTAGCGT 59.236 45.455 7.80 0.00 39.01 5.07
161 162 3.123804 GTGTCCAGAACATATGGTAGCG 58.876 50.000 7.80 0.00 40.80 4.26
162 163 4.100189 AGAGTGTCCAGAACATATGGTAGC 59.900 45.833 7.80 0.00 40.80 3.58
163 164 5.860941 AGAGTGTCCAGAACATATGGTAG 57.139 43.478 7.80 0.00 40.80 3.18
164 165 6.669631 TCTAGAGTGTCCAGAACATATGGTA 58.330 40.000 7.80 0.00 40.80 3.25
165 166 5.519808 TCTAGAGTGTCCAGAACATATGGT 58.480 41.667 7.80 0.00 40.80 3.55
166 167 6.493115 AGATCTAGAGTGTCCAGAACATATGG 59.507 42.308 7.80 0.00 40.80 2.74
167 168 7.523293 AGATCTAGAGTGTCCAGAACATATG 57.477 40.000 0.00 0.00 40.80 1.78
168 169 8.664992 TCTAGATCTAGAGTGTCCAGAACATAT 58.335 37.037 25.54 0.00 37.46 1.78
169 170 7.934665 GTCTAGATCTAGAGTGTCCAGAACATA 59.065 40.741 28.97 2.99 42.31 2.29
170 171 6.770785 GTCTAGATCTAGAGTGTCCAGAACAT 59.229 42.308 28.97 0.00 42.31 2.71
171 172 6.116806 GTCTAGATCTAGAGTGTCCAGAACA 58.883 44.000 28.97 4.02 42.31 3.18
172 173 5.235616 CGTCTAGATCTAGAGTGTCCAGAAC 59.764 48.000 28.97 14.60 42.31 3.01
173 174 5.128991 TCGTCTAGATCTAGAGTGTCCAGAA 59.871 44.000 28.97 8.23 42.31 3.02
185 186 1.704070 GGGGTCCCTCGTCTAGATCTA 59.296 57.143 8.15 1.69 0.00 1.98
187 188 0.540133 GGGGGTCCCTCGTCTAGATC 60.540 65.000 8.15 0.00 41.34 2.75
207 208 1.202371 TCGAAAGTGCCGGCTACTATG 60.202 52.381 29.70 19.31 0.00 2.23
208 209 1.108776 TCGAAAGTGCCGGCTACTAT 58.891 50.000 29.70 15.54 0.00 2.12
212 213 2.263540 GGTCGAAAGTGCCGGCTA 59.736 61.111 29.70 11.59 0.00 3.93
222 223 2.975799 GGTGCTTGGCGGTCGAAA 60.976 61.111 0.00 0.00 0.00 3.46
239 240 2.728817 GATAGCCGACGGAGGTGG 59.271 66.667 20.50 0.00 0.00 4.61
245 246 3.974757 GTCGGGGATAGCCGACGG 61.975 72.222 10.29 10.29 46.60 4.79
248 249 4.146156 TGGGTCGGGGATAGCCGA 62.146 66.667 0.00 0.00 37.31 5.54
250 251 2.041206 GAAGTGGGTCGGGGATAGCC 62.041 65.000 0.00 0.00 35.00 3.93
254 255 3.782443 GCGAAGTGGGTCGGGGAT 61.782 66.667 0.00 0.00 41.40 3.85
333 334 1.137675 CAATGACGATCTCCTCCAGCA 59.862 52.381 0.00 0.00 0.00 4.41
336 337 2.456577 TGACAATGACGATCTCCTCCA 58.543 47.619 0.00 0.00 0.00 3.86
368 369 1.377202 GCCGATGGTGCCTTCTTGA 60.377 57.895 3.21 0.00 0.00 3.02
450 456 3.733344 CTATGGACGGTGCGGGGTG 62.733 68.421 0.00 0.00 0.00 4.61
452 458 4.235762 CCTATGGACGGTGCGGGG 62.236 72.222 0.00 0.00 0.00 5.73
457 463 1.414181 AGATCTTGCCTATGGACGGTG 59.586 52.381 0.00 0.00 0.00 4.94
467 473 2.370445 CGGGGTCCAGATCTTGCCT 61.370 63.158 0.00 0.00 0.00 4.75
468 474 2.190578 CGGGGTCCAGATCTTGCC 59.809 66.667 0.00 0.00 0.00 4.52
478 484 2.042230 TCTAAGAGGGCGGGGTCC 60.042 66.667 0.00 0.00 0.00 4.46
498 504 4.408821 GTGGCGGTGGATGGAGCA 62.409 66.667 0.00 0.00 0.00 4.26
571 607 3.951332 ACGGCATGTCGTCTGTTG 58.049 55.556 21.64 0.00 39.34 3.33
772 1135 1.610038 TGCCAAATCTGACAGCAAGTG 59.390 47.619 0.00 0.00 0.00 3.16
915 1295 4.736896 GGTGCGTGAGACCGGGAC 62.737 72.222 6.32 0.00 0.00 4.46
1183 1598 3.518998 TACCTGCCGCTCGAGCTC 61.519 66.667 32.88 24.05 39.32 4.09
1628 2104 0.656205 GGTGTGCAGTTAACGCAACG 60.656 55.000 21.02 3.08 41.97 4.10
1629 2105 0.378962 TGGTGTGCAGTTAACGCAAC 59.621 50.000 21.02 19.16 41.97 4.17
1630 2106 0.660488 CTGGTGTGCAGTTAACGCAA 59.340 50.000 21.02 12.07 41.97 4.85
1631 2107 0.179070 TCTGGTGTGCAGTTAACGCA 60.179 50.000 17.24 17.24 36.94 5.24
1632 2108 0.234884 GTCTGGTGTGCAGTTAACGC 59.765 55.000 13.26 13.26 0.00 4.84
1684 2167 8.818057 ACTGATTAGTAGCGTTAATTAAGCTTG 58.182 33.333 20.06 5.36 41.88 4.01
2026 6167 5.248477 TGGAAGTAAACTAACAGGCAGATCT 59.752 40.000 0.00 0.00 0.00 2.75
2034 6175 6.710744 AGTCAACCATGGAAGTAAACTAACAG 59.289 38.462 21.47 0.00 0.00 3.16
2045 6190 1.004044 AGAGCCAGTCAACCATGGAAG 59.996 52.381 21.47 10.43 39.02 3.46
2049 6194 2.177950 GCAGAGCCAGTCAACCATG 58.822 57.895 0.00 0.00 0.00 3.66
2062 6845 2.036475 ACAATAGTATGAGCCGGCAGAG 59.964 50.000 31.54 8.20 0.00 3.35
2077 8433 3.610242 GCTCATCCTAATCGCGACAATAG 59.390 47.826 12.93 14.33 0.00 1.73
2139 8502 9.677567 CAAAACAACAGCATTATTTAGTAGTGT 57.322 29.630 0.00 0.00 0.00 3.55
2140 8503 9.677567 ACAAAACAACAGCATTATTTAGTAGTG 57.322 29.630 0.00 0.00 0.00 2.74
2142 8505 9.128107 CCACAAAACAACAGCATTATTTAGTAG 57.872 33.333 0.00 0.00 0.00 2.57
2143 8506 7.596995 GCCACAAAACAACAGCATTATTTAGTA 59.403 33.333 0.00 0.00 0.00 1.82
2145 8508 6.646240 AGCCACAAAACAACAGCATTATTTAG 59.354 34.615 0.00 0.00 0.00 1.85
2429 9326 2.094659 AATCTGCCGTGCGTTCTCG 61.095 57.895 0.00 0.00 40.37 4.04
2564 9991 2.223409 TGCCGCTAGTGTACTGATAACG 60.223 50.000 1.99 0.00 0.00 3.18
2576 10003 0.463833 GCCATTAAGGTGCCGCTAGT 60.464 55.000 0.00 0.00 40.61 2.57
2613 11920 4.324402 GCAGAAAAACGCTATCACCAATTG 59.676 41.667 0.00 0.00 0.00 2.32
2635 11959 4.199310 TCCATTAAACTCCATGCTAGTGC 58.801 43.478 0.21 0.00 40.20 4.40
2687 12084 3.243035 CCATTTCAGTCACGCACTTCAAA 60.243 43.478 0.00 0.00 30.26 2.69
3003 12502 4.536765 TCTTTCTTGGAAACTTCAGCCTT 58.463 39.130 0.00 0.00 0.00 4.35
3005 12504 5.473504 TGTATCTTTCTTGGAAACTTCAGCC 59.526 40.000 0.00 0.00 0.00 4.85
3086 12600 1.467734 GCCTTGATGACACTGAAGCAG 59.532 52.381 0.00 0.00 37.52 4.24
3126 12640 1.272816 TGAGTCGTTGGATCCCCTGTA 60.273 52.381 9.90 0.00 0.00 2.74
3153 12672 1.538950 GAAGGTTTTGCTGAGCTCCAG 59.461 52.381 12.15 9.86 45.67 3.86
3397 13125 0.652592 CTTCGACGTGGGATTGATGC 59.347 55.000 0.00 0.00 0.00 3.91
3407 13135 8.127327 TCTAGAATATTTTAGTCCTTCGACGTG 58.873 37.037 11.62 0.00 44.28 4.49
3428 13156 1.689575 GCACTCCCCCTCACATCTAGA 60.690 57.143 0.00 0.00 0.00 2.43
3836 16373 1.656587 TCCATAGCCAGTTGGACAGT 58.343 50.000 1.45 0.00 37.10 3.55
4011 16711 7.923878 ACTCAGTTTTCTAACTCTGAAACTCTC 59.076 37.037 0.00 0.00 42.67 3.20
4027 16727 5.689068 CCTCTTTTTGCATGACTCAGTTTTC 59.311 40.000 0.00 0.00 0.00 2.29
4028 16728 5.360714 TCCTCTTTTTGCATGACTCAGTTTT 59.639 36.000 0.00 0.00 0.00 2.43
4276 16984 2.107950 AACCACATGTATGTCACCGG 57.892 50.000 0.00 0.00 39.39 5.28
4278 16986 5.242434 TCAGTAAACCACATGTATGTCACC 58.758 41.667 0.00 0.00 39.39 4.02
4546 17273 4.083324 ACAATTGTTGCTATGACGGTTCAG 60.083 41.667 4.92 0.00 34.35 3.02
5209 17965 5.822519 TGAGTGACAAGTTACTGAATTTGCT 59.177 36.000 2.12 0.00 36.10 3.91
5237 17994 9.120538 TGACTGCTTAAGTTTTAGAATTTCTGT 57.879 29.630 9.22 0.00 40.07 3.41
5336 18338 8.429237 AAATTTTCTGTGGGGACAAATACATA 57.571 30.769 0.00 0.00 46.06 2.29
5434 18438 6.183360 GGATATCTCCTGCAAAGTAAAACACC 60.183 42.308 2.05 0.00 38.65 4.16
5452 18456 6.189859 TGTTGCTTCTTTCCATTGGATATCT 58.810 36.000 6.15 0.00 0.00 1.98
5488 18492 4.576216 TTATTGCGAAGAAAAAGGTGCA 57.424 36.364 0.00 0.00 0.00 4.57
5585 18591 5.929992 TCTTCATTGTCTTACGAAAATCGGT 59.070 36.000 4.66 0.00 45.59 4.69
5637 18644 5.580691 TCAATTCTCATGCTACAGTTTACCG 59.419 40.000 0.00 0.00 0.00 4.02
5704 18711 3.498397 CAGGCTTCTACAAACATCACGTT 59.502 43.478 0.00 0.00 40.50 3.99
5706 18713 2.159653 GCAGGCTTCTACAAACATCACG 60.160 50.000 0.00 0.00 0.00 4.35
5751 18758 2.983136 CCGCGAAATTGTGCAAATTGTA 59.017 40.909 8.23 0.00 0.00 2.41
5791 18798 2.202743 TGCATGTAGCTCCGACGC 60.203 61.111 0.00 0.00 45.94 5.19
5792 18799 0.867753 GACTGCATGTAGCTCCGACG 60.868 60.000 11.09 0.00 45.94 5.12
5793 18800 0.528684 GGACTGCATGTAGCTCCGAC 60.529 60.000 11.09 0.00 45.94 4.79
5794 18801 0.684479 AGGACTGCATGTAGCTCCGA 60.684 55.000 19.08 0.00 45.94 4.55
5795 18802 0.529337 CAGGACTGCATGTAGCTCCG 60.529 60.000 19.08 13.49 45.94 4.63
5796 18803 0.179062 CCAGGACTGCATGTAGCTCC 60.179 60.000 18.19 18.19 45.94 4.70
5797 18804 0.179062 CCCAGGACTGCATGTAGCTC 60.179 60.000 11.09 7.64 45.94 4.09
5798 18805 1.630126 CCCCAGGACTGCATGTAGCT 61.630 60.000 11.09 0.00 45.94 3.32
5799 18806 1.153086 CCCCAGGACTGCATGTAGC 60.153 63.158 11.09 3.85 45.96 3.58
5800 18807 0.107508 CACCCCAGGACTGCATGTAG 60.108 60.000 9.50 9.50 0.00 2.74
5801 18808 1.561769 CCACCCCAGGACTGCATGTA 61.562 60.000 0.00 0.00 0.00 2.29
5802 18809 2.759114 CACCCCAGGACTGCATGT 59.241 61.111 0.00 0.00 0.00 3.21
5803 18810 2.044650 CCACCCCAGGACTGCATG 60.045 66.667 0.00 0.00 0.00 4.06
5804 18811 4.052518 GCCACCCCAGGACTGCAT 62.053 66.667 0.00 0.00 0.00 3.96
5807 18814 4.351054 GTGGCCACCCCAGGACTG 62.351 72.222 26.31 0.00 46.54 3.51
5828 18835 1.068352 AATTAGGCTAGGGCTGGGGG 61.068 60.000 3.86 0.00 39.30 5.40
5829 18836 1.351350 GTAATTAGGCTAGGGCTGGGG 59.649 57.143 3.86 0.00 39.30 4.96
5830 18837 2.039084 CAGTAATTAGGCTAGGGCTGGG 59.961 54.545 3.86 0.00 39.30 4.45
5831 18838 2.972713 TCAGTAATTAGGCTAGGGCTGG 59.027 50.000 13.49 0.00 39.30 4.85
5832 18839 4.503991 CCTTCAGTAATTAGGCTAGGGCTG 60.504 50.000 3.86 3.16 39.30 4.85
5833 18840 3.648545 CCTTCAGTAATTAGGCTAGGGCT 59.351 47.826 0.00 0.00 42.39 5.19
5834 18841 3.244596 CCCTTCAGTAATTAGGCTAGGGC 60.245 52.174 0.47 0.00 35.11 5.19
5835 18842 4.232091 TCCCTTCAGTAATTAGGCTAGGG 58.768 47.826 6.85 6.85 41.98 3.53
5836 18843 4.902448 ACTCCCTTCAGTAATTAGGCTAGG 59.098 45.833 0.00 0.00 0.00 3.02
5837 18844 6.487299 AACTCCCTTCAGTAATTAGGCTAG 57.513 41.667 0.00 0.00 0.00 3.42
5838 18845 6.886178 AAACTCCCTTCAGTAATTAGGCTA 57.114 37.500 0.00 0.00 0.00 3.93
5839 18846 5.780958 AAACTCCCTTCAGTAATTAGGCT 57.219 39.130 0.00 0.00 0.00 4.58
5840 18847 6.835819 AAAAACTCCCTTCAGTAATTAGGC 57.164 37.500 0.00 0.00 0.00 3.93
5861 18868 7.039293 GCTCTCCTTAATTTAACCCTCCAAAAA 60.039 37.037 0.00 0.00 0.00 1.94
5862 18869 6.436218 GCTCTCCTTAATTTAACCCTCCAAAA 59.564 38.462 0.00 0.00 0.00 2.44
5863 18870 5.949952 GCTCTCCTTAATTTAACCCTCCAAA 59.050 40.000 0.00 0.00 0.00 3.28
5864 18871 5.506708 GCTCTCCTTAATTTAACCCTCCAA 58.493 41.667 0.00 0.00 0.00 3.53
5865 18872 5.112129 GCTCTCCTTAATTTAACCCTCCA 57.888 43.478 0.00 0.00 0.00 3.86
6208 19215 1.953686 GACGGAGCTAGCAGAAGATCT 59.046 52.381 18.83 0.00 32.45 2.75
6209 19216 1.678627 TGACGGAGCTAGCAGAAGATC 59.321 52.381 18.83 4.03 0.00 2.75
6210 19217 1.407258 GTGACGGAGCTAGCAGAAGAT 59.593 52.381 18.83 0.00 0.00 2.40
6211 19218 0.811915 GTGACGGAGCTAGCAGAAGA 59.188 55.000 18.83 0.00 0.00 2.87
6212 19219 0.814457 AGTGACGGAGCTAGCAGAAG 59.186 55.000 18.83 7.69 0.00 2.85
6213 19220 0.528017 CAGTGACGGAGCTAGCAGAA 59.472 55.000 18.83 0.00 0.00 3.02
6214 19221 0.322546 TCAGTGACGGAGCTAGCAGA 60.323 55.000 18.83 0.00 0.00 4.26
6215 19222 0.100325 CTCAGTGACGGAGCTAGCAG 59.900 60.000 18.83 10.33 0.00 4.24
6216 19223 2.184323 CTCAGTGACGGAGCTAGCA 58.816 57.895 18.83 0.00 0.00 3.49
6222 19229 1.203287 TGATCTTGCTCAGTGACGGAG 59.797 52.381 8.41 8.41 35.47 4.63
6223 19230 1.256812 TGATCTTGCTCAGTGACGGA 58.743 50.000 0.00 0.00 0.00 4.69
6224 19231 1.728971 GTTGATCTTGCTCAGTGACGG 59.271 52.381 0.00 0.00 0.00 4.79
6225 19232 1.388093 CGTTGATCTTGCTCAGTGACG 59.612 52.381 0.00 0.00 0.00 4.35
6226 19233 1.728971 CCGTTGATCTTGCTCAGTGAC 59.271 52.381 0.00 0.00 0.00 3.67
6227 19234 1.941209 GCCGTTGATCTTGCTCAGTGA 60.941 52.381 0.00 0.00 0.00 3.41
6228 19235 0.445436 GCCGTTGATCTTGCTCAGTG 59.555 55.000 0.00 0.00 0.00 3.66
6229 19236 0.322975 AGCCGTTGATCTTGCTCAGT 59.677 50.000 0.00 0.00 0.00 3.41
6230 19237 0.725686 CAGCCGTTGATCTTGCTCAG 59.274 55.000 0.00 0.00 30.08 3.35
6231 19238 0.674581 CCAGCCGTTGATCTTGCTCA 60.675 55.000 0.00 0.00 30.08 4.26
6232 19239 1.986575 GCCAGCCGTTGATCTTGCTC 61.987 60.000 0.00 0.00 30.08 4.26
6233 19240 2.042831 GCCAGCCGTTGATCTTGCT 61.043 57.895 0.00 0.00 33.52 3.91
6234 19241 2.486966 GCCAGCCGTTGATCTTGC 59.513 61.111 0.00 0.00 0.00 4.01
6235 19242 1.298157 TTCGCCAGCCGTTGATCTTG 61.298 55.000 0.00 0.00 38.35 3.02
6236 19243 0.605319 TTTCGCCAGCCGTTGATCTT 60.605 50.000 0.00 0.00 38.35 2.40
6237 19244 0.605319 TTTTCGCCAGCCGTTGATCT 60.605 50.000 0.00 0.00 38.35 2.75
6238 19245 0.179189 CTTTTCGCCAGCCGTTGATC 60.179 55.000 0.00 0.00 38.35 2.92
6239 19246 0.605319 TCTTTTCGCCAGCCGTTGAT 60.605 50.000 0.00 0.00 38.35 2.57
6240 19247 0.605319 ATCTTTTCGCCAGCCGTTGA 60.605 50.000 0.00 0.00 38.35 3.18
6241 19248 1.083489 TATCTTTTCGCCAGCCGTTG 58.917 50.000 0.00 0.00 38.35 4.10
6242 19249 1.670811 CATATCTTTTCGCCAGCCGTT 59.329 47.619 0.00 0.00 38.35 4.44
6243 19250 1.299541 CATATCTTTTCGCCAGCCGT 58.700 50.000 0.00 0.00 38.35 5.68
6244 19251 0.040958 GCATATCTTTTCGCCAGCCG 60.041 55.000 0.00 0.00 38.61 5.52
6245 19252 1.002033 CTGCATATCTTTTCGCCAGCC 60.002 52.381 0.00 0.00 0.00 4.85
6246 19253 1.942657 TCTGCATATCTTTTCGCCAGC 59.057 47.619 0.00 0.00 0.00 4.85
6247 19254 4.142622 TGTTTCTGCATATCTTTTCGCCAG 60.143 41.667 0.00 0.00 0.00 4.85
6248 19255 3.755905 TGTTTCTGCATATCTTTTCGCCA 59.244 39.130 0.00 0.00 0.00 5.69
6249 19256 4.355543 TGTTTCTGCATATCTTTTCGCC 57.644 40.909 0.00 0.00 0.00 5.54
6250 19257 5.814783 AGATGTTTCTGCATATCTTTTCGC 58.185 37.500 0.00 0.00 0.00 4.70
6251 19258 7.244166 AGAGATGTTTCTGCATATCTTTTCG 57.756 36.000 0.00 0.00 42.63 3.46
6256 19263 4.510711 CGCAAGAGATGTTTCTGCATATCT 59.489 41.667 0.00 0.00 45.83 1.98
6257 19264 4.509230 TCGCAAGAGATGTTTCTGCATATC 59.491 41.667 0.00 0.00 45.01 1.63
6258 19265 4.445453 TCGCAAGAGATGTTTCTGCATAT 58.555 39.130 0.00 0.00 45.01 1.78
6259 19266 3.860641 TCGCAAGAGATGTTTCTGCATA 58.139 40.909 0.00 0.00 45.01 3.14
6260 19267 2.703416 TCGCAAGAGATGTTTCTGCAT 58.297 42.857 0.00 0.00 45.01 3.96
6261 19268 2.168326 TCGCAAGAGATGTTTCTGCA 57.832 45.000 0.00 0.00 45.01 4.41
6273 19280 2.225491 CCCTTTCACGAATTTCGCAAGA 59.775 45.455 18.24 11.13 45.12 3.02
6274 19281 2.584791 CCCTTTCACGAATTTCGCAAG 58.415 47.619 18.24 15.99 45.12 4.01
6275 19282 1.268352 CCCCTTTCACGAATTTCGCAA 59.732 47.619 18.24 8.92 45.12 4.85
6276 19283 0.878416 CCCCTTTCACGAATTTCGCA 59.122 50.000 18.24 2.92 45.12 5.10
6277 19284 0.879090 ACCCCTTTCACGAATTTCGC 59.121 50.000 18.24 0.00 45.12 4.70
6278 19285 1.877443 ACACCCCTTTCACGAATTTCG 59.123 47.619 16.84 16.84 46.93 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.