Multiple sequence alignment - TraesCS7D01G497700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G497700 chr7D 100.000 3301 0 0 1 3301 604474181 604477481 0.000000e+00 6096.0
1 TraesCS7D01G497700 chr7D 90.616 1364 89 16 953 2315 603847705 603849030 0.000000e+00 1773.0
2 TraesCS7D01G497700 chr7D 89.825 1199 102 13 1135 2328 604531042 604532225 0.000000e+00 1520.0
3 TraesCS7D01G497700 chr7D 86.126 1146 116 24 1128 2266 603982530 603983639 0.000000e+00 1195.0
4 TraesCS7D01G497700 chr7D 89.072 485 45 6 2681 3158 604532362 604532845 2.190000e-166 595.0
5 TraesCS7D01G497700 chr7D 93.617 141 7 1 3163 3301 603853471 603853611 3.340000e-50 209.0
6 TraesCS7D01G497700 chr7D 89.262 149 16 0 2445 2593 604532216 604532364 1.560000e-43 187.0
7 TraesCS7D01G497700 chr7D 97.248 109 3 0 38 146 370063026 370062918 5.630000e-43 185.0
8 TraesCS7D01G497700 chr7D 93.966 116 7 0 39 154 13294331 13294216 3.390000e-40 176.0
9 TraesCS7D01G497700 chr7D 80.583 206 22 7 749 947 604530648 604530842 3.430000e-30 143.0
10 TraesCS7D01G497700 chr7D 90.099 101 10 0 2832 2932 603852620 603852720 7.430000e-27 132.0
11 TraesCS7D01G497700 chr7D 84.173 139 11 6 953 1091 604530913 604531040 1.240000e-24 124.0
12 TraesCS7D01G497700 chr7A 89.712 1565 98 28 759 2306 696552278 696553796 0.000000e+00 1940.0
13 TraesCS7D01G497700 chr7A 91.167 1200 87 10 1135 2331 696723495 696722312 0.000000e+00 1611.0
14 TraesCS7D01G497700 chr7A 86.684 1134 112 24 1128 2255 696623505 696622405 0.000000e+00 1221.0
15 TraesCS7D01G497700 chr7A 92.157 612 37 4 144 751 714538041 714537437 0.000000e+00 854.0
16 TraesCS7D01G497700 chr7A 89.136 359 36 1 2574 2932 696722223 696721868 8.410000e-121 444.0
17 TraesCS7D01G497700 chr7A 87.923 207 20 4 749 950 696723880 696723674 4.260000e-59 239.0
18 TraesCS7D01G497700 chr7A 93.750 144 9 0 3158 3301 696721315 696721172 1.990000e-52 217.0
19 TraesCS7D01G497700 chr7A 82.803 157 12 7 944 1091 696723647 696723497 3.460000e-25 126.0
20 TraesCS7D01G497700 chr7A 100.000 41 0 0 1 41 714538079 714538039 3.530000e-10 76.8
21 TraesCS7D01G497700 chr7B 90.869 1369 87 8 953 2306 686849853 686851198 0.000000e+00 1801.0
22 TraesCS7D01G497700 chr7B 92.359 1204 71 6 1130 2331 686966482 686965298 0.000000e+00 1694.0
23 TraesCS7D01G497700 chr7B 90.571 1262 85 11 1130 2382 688163051 688164287 0.000000e+00 1640.0
24 TraesCS7D01G497700 chr7B 84.725 1329 136 41 953 2266 686888623 686887347 0.000000e+00 1267.0
25 TraesCS7D01G497700 chr7B 93.800 629 36 2 2676 3301 688164499 688165127 0.000000e+00 942.0
26 TraesCS7D01G497700 chr7B 91.626 609 44 5 144 751 282941995 282941393 0.000000e+00 835.0
27 TraesCS7D01G497700 chr7B 86.639 726 81 12 2445 3161 686965310 686964592 0.000000e+00 789.0
28 TraesCS7D01G497700 chr7B 86.782 348 29 11 749 1092 686966811 686966477 4.020000e-99 372.0
29 TraesCS7D01G497700 chr7B 94.203 207 11 1 2428 2633 688164290 688164496 6.880000e-82 315.0
30 TraesCS7D01G497700 chr7B 82.900 269 13 5 839 1092 688162806 688163056 9.280000e-51 211.0
31 TraesCS7D01G497700 chr7B 85.714 196 20 6 759 947 686849604 686849798 2.010000e-47 200.0
32 TraesCS7D01G497700 chr7B 100.000 41 0 0 1 41 282942033 282941993 3.530000e-10 76.8
33 TraesCS7D01G497700 chr4D 93.432 609 34 2 144 752 483535828 483536430 0.000000e+00 898.0
34 TraesCS7D01G497700 chr4D 93.443 610 33 5 144 752 483565743 483566346 0.000000e+00 898.0
35 TraesCS7D01G497700 chr4D 100.000 41 0 0 1 41 483565705 483565745 3.530000e-10 76.8
36 TraesCS7D01G497700 chr3B 91.475 610 45 5 144 752 200319534 200318931 0.000000e+00 832.0
37 TraesCS7D01G497700 chr3B 94.167 120 5 2 28 147 156862315 156862432 7.280000e-42 182.0
38 TraesCS7D01G497700 chr3B 94.690 113 6 0 33 145 526281123 526281011 3.390000e-40 176.0
39 TraesCS7D01G497700 chr3B 91.406 128 9 2 39 166 553717493 553717368 1.220000e-39 174.0
40 TraesCS7D01G497700 chr5A 89.034 611 59 3 144 752 188262367 188261763 0.000000e+00 750.0
41 TraesCS7D01G497700 chr5A 93.246 459 30 1 144 601 135585484 135585026 0.000000e+00 675.0
42 TraesCS7D01G497700 chr5A 91.473 129 7 3 36 160 657200318 657200446 1.220000e-39 174.0
43 TraesCS7D01G497700 chr6D 80.651 553 77 17 147 674 318800556 318800009 5.130000e-108 401.0
44 TraesCS7D01G497700 chr3D 96.429 112 3 1 35 145 582122927 582123038 2.020000e-42 183.0
45 TraesCS7D01G497700 chr3D 94.068 118 7 0 37 154 612130744 612130627 2.620000e-41 180.0
46 TraesCS7D01G497700 chr3D 88.393 112 10 2 2343 2454 272494257 272494149 7.430000e-27 132.0
47 TraesCS7D01G497700 chr3D 82.828 99 12 3 421 518 18812521 18812427 2.110000e-12 84.2
48 TraesCS7D01G497700 chr2D 89.630 135 11 3 39 171 310299521 310299388 5.660000e-38 169.0
49 TraesCS7D01G497700 chr2A 100.000 44 0 0 1 44 41694749 41694792 7.590000e-12 82.4
50 TraesCS7D01G497700 chr5D 100.000 29 0 0 421 449 406202080 406202108 2.000000e-03 54.7
51 TraesCS7D01G497700 chr2B 100.000 28 0 0 11 38 564985959 564985932 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G497700 chr7D 604474181 604477481 3300 False 6096.000000 6096 100.000000 1 3301 1 chr7D.!!$F2 3300
1 TraesCS7D01G497700 chr7D 603982530 603983639 1109 False 1195.000000 1195 86.126000 1128 2266 1 chr7D.!!$F1 1138
2 TraesCS7D01G497700 chr7D 603847705 603853611 5906 False 704.666667 1773 91.444000 953 3301 3 chr7D.!!$F3 2348
3 TraesCS7D01G497700 chr7D 604530648 604532845 2197 False 513.800000 1520 86.583000 749 3158 5 chr7D.!!$F4 2409
4 TraesCS7D01G497700 chr7A 696552278 696553796 1518 False 1940.000000 1940 89.712000 759 2306 1 chr7A.!!$F1 1547
5 TraesCS7D01G497700 chr7A 696622405 696623505 1100 True 1221.000000 1221 86.684000 1128 2255 1 chr7A.!!$R1 1127
6 TraesCS7D01G497700 chr7A 696721172 696723880 2708 True 527.400000 1611 88.955800 749 3301 5 chr7A.!!$R2 2552
7 TraesCS7D01G497700 chr7A 714537437 714538079 642 True 465.400000 854 96.078500 1 751 2 chr7A.!!$R3 750
8 TraesCS7D01G497700 chr7B 686887347 686888623 1276 True 1267.000000 1267 84.725000 953 2266 1 chr7B.!!$R1 1313
9 TraesCS7D01G497700 chr7B 686849604 686851198 1594 False 1000.500000 1801 88.291500 759 2306 2 chr7B.!!$F1 1547
10 TraesCS7D01G497700 chr7B 686964592 686966811 2219 True 951.666667 1694 88.593333 749 3161 3 chr7B.!!$R3 2412
11 TraesCS7D01G497700 chr7B 688162806 688165127 2321 False 777.000000 1640 90.368500 839 3301 4 chr7B.!!$F2 2462
12 TraesCS7D01G497700 chr7B 282941393 282942033 640 True 455.900000 835 95.813000 1 751 2 chr7B.!!$R2 750
13 TraesCS7D01G497700 chr4D 483535828 483536430 602 False 898.000000 898 93.432000 144 752 1 chr4D.!!$F1 608
14 TraesCS7D01G497700 chr4D 483565705 483566346 641 False 487.400000 898 96.721500 1 752 2 chr4D.!!$F2 751
15 TraesCS7D01G497700 chr3B 200318931 200319534 603 True 832.000000 832 91.475000 144 752 1 chr3B.!!$R1 608
16 TraesCS7D01G497700 chr5A 188261763 188262367 604 True 750.000000 750 89.034000 144 752 1 chr5A.!!$R2 608
17 TraesCS7D01G497700 chr6D 318800009 318800556 547 True 401.000000 401 80.651000 147 674 1 chr6D.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 454 0.034863 GTAAAGGGATTGGCCGGTGA 60.035 55.0 1.9 0.0 37.63 4.02 F
597 622 0.035458 GGGAGAGATTACATGCGGGG 59.965 60.0 0.0 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 2337 0.325933 CATCTGCTCCACCAGGTTCA 59.674 55.0 0.0 0.0 35.89 3.18 R
2459 5857 0.673644 GTGCAAGTCATACACCGGCT 60.674 55.0 0.0 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.154567 TCACGGCCACCTACTAATCT 57.845 50.000 2.24 0.00 0.00 2.40
39 40 3.301794 TCACGGCCACCTACTAATCTA 57.698 47.619 2.24 0.00 0.00 1.98
40 41 2.954318 TCACGGCCACCTACTAATCTAC 59.046 50.000 2.24 0.00 0.00 2.59
41 42 2.957006 CACGGCCACCTACTAATCTACT 59.043 50.000 2.24 0.00 0.00 2.57
42 43 3.004524 CACGGCCACCTACTAATCTACTC 59.995 52.174 2.24 0.00 0.00 2.59
43 44 2.557490 CGGCCACCTACTAATCTACTCC 59.443 54.545 2.24 0.00 0.00 3.85
44 45 2.898612 GGCCACCTACTAATCTACTCCC 59.101 54.545 0.00 0.00 0.00 4.30
45 46 3.438225 GGCCACCTACTAATCTACTCCCT 60.438 52.174 0.00 0.00 0.00 4.20
46 47 3.827876 GCCACCTACTAATCTACTCCCTC 59.172 52.174 0.00 0.00 0.00 4.30
47 48 4.409187 CCACCTACTAATCTACTCCCTCC 58.591 52.174 0.00 0.00 0.00 4.30
48 49 4.140994 CCACCTACTAATCTACTCCCTCCA 60.141 50.000 0.00 0.00 0.00 3.86
49 50 5.459831 CCACCTACTAATCTACTCCCTCCAT 60.460 48.000 0.00 0.00 0.00 3.41
50 51 6.078664 CACCTACTAATCTACTCCCTCCATT 58.921 44.000 0.00 0.00 0.00 3.16
51 52 6.209788 CACCTACTAATCTACTCCCTCCATTC 59.790 46.154 0.00 0.00 0.00 2.67
52 53 5.416326 CCTACTAATCTACTCCCTCCATTCG 59.584 48.000 0.00 0.00 0.00 3.34
53 54 4.153411 ACTAATCTACTCCCTCCATTCGG 58.847 47.826 0.00 0.00 0.00 4.30
54 55 3.330126 AATCTACTCCCTCCATTCGGA 57.670 47.619 0.00 0.00 39.79 4.55
55 56 2.840640 TCTACTCCCTCCATTCGGAA 57.159 50.000 0.00 0.00 42.21 4.30
56 57 3.330126 TCTACTCCCTCCATTCGGAAT 57.670 47.619 0.00 0.00 42.21 3.01
57 58 3.654273 TCTACTCCCTCCATTCGGAATT 58.346 45.455 0.00 0.00 42.21 2.17
58 59 4.811498 TCTACTCCCTCCATTCGGAATTA 58.189 43.478 0.00 0.00 42.21 1.40
59 60 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
60 61 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
61 62 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
62 63 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
63 64 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
64 65 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
65 66 3.555956 CCTCCATTCGGAATTACTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
66 67 2.933906 TCCATTCGGAATTACTTGTCGC 59.066 45.455 0.00 0.00 38.83 5.19
67 68 2.675844 CCATTCGGAATTACTTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
68 69 3.242413 CCATTCGGAATTACTTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
69 70 3.306917 TTCGGAATTACTTGTCGCAGA 57.693 42.857 0.00 0.00 0.00 4.26
70 71 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
71 72 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
72 73 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
73 74 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
74 75 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
75 76 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
76 77 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
77 78 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
78 79 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
79 80 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
80 81 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
81 82 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
82 83 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
83 84 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
84 85 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
85 86 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
86 87 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
87 88 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
88 89 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
89 90 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
90 91 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
91 92 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
92 93 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
119 120 8.749026 AGTTCTAGTTACATCTATTTCCGAGA 57.251 34.615 0.00 0.00 0.00 4.04
120 121 8.623030 AGTTCTAGTTACATCTATTTCCGAGAC 58.377 37.037 0.00 0.00 0.00 3.36
121 122 8.404000 GTTCTAGTTACATCTATTTCCGAGACA 58.596 37.037 0.00 0.00 0.00 3.41
122 123 8.515695 TCTAGTTACATCTATTTCCGAGACAA 57.484 34.615 0.00 0.00 0.00 3.18
123 124 8.622157 TCTAGTTACATCTATTTCCGAGACAAG 58.378 37.037 0.00 0.00 0.00 3.16
124 125 7.171630 AGTTACATCTATTTCCGAGACAAGT 57.828 36.000 0.00 0.00 0.00 3.16
125 126 8.289939 AGTTACATCTATTTCCGAGACAAGTA 57.710 34.615 0.00 0.00 0.00 2.24
126 127 8.746530 AGTTACATCTATTTCCGAGACAAGTAA 58.253 33.333 0.00 0.00 0.00 2.24
127 128 9.530633 GTTACATCTATTTCCGAGACAAGTAAT 57.469 33.333 0.00 0.00 0.00 1.89
129 130 8.649973 ACATCTATTTCCGAGACAAGTAATTC 57.350 34.615 0.00 0.00 0.00 2.17
130 131 7.711339 ACATCTATTTCCGAGACAAGTAATTCC 59.289 37.037 0.00 0.00 0.00 3.01
131 132 6.270815 TCTATTTCCGAGACAAGTAATTCCG 58.729 40.000 0.00 0.00 0.00 4.30
132 133 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
133 134 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
134 135 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
135 136 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
136 137 3.495193 CGAGACAAGTAATTCCGAACGA 58.505 45.455 0.00 0.00 0.00 3.85
137 138 3.916172 CGAGACAAGTAATTCCGAACGAA 59.084 43.478 0.00 0.00 34.14 3.85
138 139 4.030306 CGAGACAAGTAATTCCGAACGAAG 59.970 45.833 0.00 0.00 32.78 3.79
139 140 4.243270 AGACAAGTAATTCCGAACGAAGG 58.757 43.478 0.00 0.00 32.78 3.46
140 141 3.332034 ACAAGTAATTCCGAACGAAGGG 58.668 45.455 0.00 0.00 32.78 3.95
141 142 3.007182 ACAAGTAATTCCGAACGAAGGGA 59.993 43.478 0.00 0.00 32.78 4.20
142 143 3.521947 AGTAATTCCGAACGAAGGGAG 57.478 47.619 0.00 0.00 32.78 4.30
203 204 2.363038 TGATATGGCCAGCAAAATCAGC 59.637 45.455 13.05 0.00 0.00 4.26
242 245 6.372381 TGAATCAACTACCATTGTGATGTGAG 59.628 38.462 0.00 0.00 0.00 3.51
307 310 4.269523 TGCCCGCTCTTGTTGGCT 62.270 61.111 0.00 0.00 44.32 4.75
315 318 1.233019 CTCTTGTTGGCTGTGTCAGG 58.767 55.000 0.00 0.00 31.21 3.86
361 365 1.812922 GCACCTCGGCAGATCACAG 60.813 63.158 0.00 0.00 0.00 3.66
411 436 2.785703 GGTGGGGAGGAGTAGGGT 59.214 66.667 0.00 0.00 0.00 4.34
418 443 1.293153 GGGAGGAGTAGGGTAAAGGGA 59.707 57.143 0.00 0.00 0.00 4.20
419 444 2.090096 GGGAGGAGTAGGGTAAAGGGAT 60.090 54.545 0.00 0.00 0.00 3.85
422 447 3.391626 GAGGAGTAGGGTAAAGGGATTGG 59.608 52.174 0.00 0.00 0.00 3.16
423 448 2.158652 GGAGTAGGGTAAAGGGATTGGC 60.159 54.545 0.00 0.00 0.00 4.52
424 449 1.850998 AGTAGGGTAAAGGGATTGGCC 59.149 52.381 0.00 0.00 0.00 5.36
425 450 0.841289 TAGGGTAAAGGGATTGGCCG 59.159 55.000 0.00 0.00 37.63 6.13
426 451 1.455032 GGGTAAAGGGATTGGCCGG 60.455 63.158 0.00 0.00 37.63 6.13
427 452 1.305287 GGTAAAGGGATTGGCCGGT 59.695 57.895 1.90 0.00 37.63 5.28
428 453 1.035385 GGTAAAGGGATTGGCCGGTG 61.035 60.000 1.90 0.00 37.63 4.94
429 454 0.034863 GTAAAGGGATTGGCCGGTGA 60.035 55.000 1.90 0.00 37.63 4.02
430 455 0.254747 TAAAGGGATTGGCCGGTGAG 59.745 55.000 1.90 0.00 37.63 3.51
431 456 2.499303 AAAGGGATTGGCCGGTGAGG 62.499 60.000 1.90 0.00 44.97 3.86
432 457 3.728373 GGGATTGGCCGGTGAGGT 61.728 66.667 1.90 0.00 43.70 3.85
433 458 2.438434 GGATTGGCCGGTGAGGTG 60.438 66.667 1.90 0.00 43.70 4.00
434 459 2.438434 GATTGGCCGGTGAGGTGG 60.438 66.667 1.90 0.00 43.70 4.61
435 460 3.256960 ATTGGCCGGTGAGGTGGT 61.257 61.111 1.90 0.00 43.70 4.16
436 461 3.268103 ATTGGCCGGTGAGGTGGTC 62.268 63.158 1.90 0.00 43.70 4.02
441 466 3.991051 CGGTGAGGTGGTCGTGCT 61.991 66.667 0.00 0.00 0.00 4.40
442 467 2.357517 GGTGAGGTGGTCGTGCTG 60.358 66.667 0.00 0.00 0.00 4.41
443 468 3.044305 GTGAGGTGGTCGTGCTGC 61.044 66.667 0.00 0.00 0.00 5.25
444 469 3.233980 TGAGGTGGTCGTGCTGCT 61.234 61.111 0.00 0.00 0.00 4.24
445 470 2.433318 GAGGTGGTCGTGCTGCTC 60.433 66.667 0.00 0.00 0.00 4.26
446 471 4.363990 AGGTGGTCGTGCTGCTCG 62.364 66.667 17.08 17.08 0.00 5.03
447 472 4.357947 GGTGGTCGTGCTGCTCGA 62.358 66.667 21.13 21.13 34.91 4.04
452 477 2.729491 TCGTGCTGCTCGACAACG 60.729 61.111 21.13 11.65 41.26 4.10
453 478 2.729491 CGTGCTGCTCGACAACGA 60.729 61.111 18.19 0.00 46.56 3.85
462 487 3.982213 TCGACAACGATGACGGTAG 57.018 52.632 16.15 0.00 43.35 3.18
463 488 1.441738 TCGACAACGATGACGGTAGA 58.558 50.000 16.15 0.00 43.35 2.59
464 489 1.395954 TCGACAACGATGACGGTAGAG 59.604 52.381 16.15 0.00 43.35 2.43
465 490 1.531264 CGACAACGATGACGGTAGAGG 60.531 57.143 9.45 0.00 44.46 3.69
466 491 0.815734 ACAACGATGACGGTAGAGGG 59.184 55.000 0.00 0.00 44.46 4.30
467 492 1.100510 CAACGATGACGGTAGAGGGA 58.899 55.000 0.00 0.00 44.46 4.20
468 493 1.065701 CAACGATGACGGTAGAGGGAG 59.934 57.143 0.00 0.00 44.46 4.30
469 494 0.465824 ACGATGACGGTAGAGGGAGG 60.466 60.000 0.00 0.00 44.46 4.30
470 495 1.797211 CGATGACGGTAGAGGGAGGC 61.797 65.000 0.00 0.00 35.72 4.70
471 496 1.797211 GATGACGGTAGAGGGAGGCG 61.797 65.000 0.00 0.00 0.00 5.52
472 497 3.217743 GACGGTAGAGGGAGGCGG 61.218 72.222 0.00 0.00 0.00 6.13
473 498 4.835891 ACGGTAGAGGGAGGCGGG 62.836 72.222 0.00 0.00 0.00 6.13
474 499 4.835891 CGGTAGAGGGAGGCGGGT 62.836 72.222 0.00 0.00 0.00 5.28
475 500 3.155167 GGTAGAGGGAGGCGGGTG 61.155 72.222 0.00 0.00 0.00 4.61
476 501 3.851128 GTAGAGGGAGGCGGGTGC 61.851 72.222 0.00 0.00 41.71 5.01
494 519 4.129737 GTGCGAGGCAGGCGTAGA 62.130 66.667 0.00 0.00 40.08 2.59
495 520 3.378602 TGCGAGGCAGGCGTAGAA 61.379 61.111 0.00 0.00 33.32 2.10
496 521 2.583593 GCGAGGCAGGCGTAGAAG 60.584 66.667 0.00 0.00 0.00 2.85
497 522 2.583593 CGAGGCAGGCGTAGAAGC 60.584 66.667 0.00 0.00 0.00 3.86
506 531 3.777016 GCGTAGAAGCCGATCTAGG 57.223 57.895 6.97 6.97 39.58 3.02
514 539 2.978565 CCGATCTAGGCGAGGCGA 60.979 66.667 10.99 0.00 0.00 5.54
515 540 2.558821 CGATCTAGGCGAGGCGAG 59.441 66.667 5.24 0.57 0.00 5.03
516 541 2.257067 GATCTAGGCGAGGCGAGC 59.743 66.667 2.10 0.00 0.00 5.03
517 542 2.203422 ATCTAGGCGAGGCGAGCT 60.203 61.111 7.13 0.00 34.52 4.09
518 543 2.470801 GATCTAGGCGAGGCGAGCTG 62.471 65.000 0.00 0.00 34.52 4.24
519 544 4.277593 CTAGGCGAGGCGAGCTGG 62.278 72.222 0.00 0.00 34.52 4.85
528 553 4.090057 GCGAGCTGGGCGTTGTTC 62.090 66.667 0.00 0.00 0.00 3.18
529 554 3.777925 CGAGCTGGGCGTTGTTCG 61.778 66.667 0.00 0.00 43.12 3.95
530 555 2.665185 GAGCTGGGCGTTGTTCGT 60.665 61.111 0.00 0.00 42.13 3.85
531 556 2.954753 GAGCTGGGCGTTGTTCGTG 61.955 63.158 0.00 0.00 42.13 4.35
532 557 4.683334 GCTGGGCGTTGTTCGTGC 62.683 66.667 0.00 0.00 42.13 5.34
533 558 3.276091 CTGGGCGTTGTTCGTGCA 61.276 61.111 0.00 0.00 42.13 4.57
534 559 3.240606 CTGGGCGTTGTTCGTGCAG 62.241 63.158 0.00 0.00 42.13 4.41
535 560 3.276846 GGGCGTTGTTCGTGCAGT 61.277 61.111 0.00 0.00 42.13 4.40
536 561 2.713154 GGCGTTGTTCGTGCAGTT 59.287 55.556 0.00 0.00 42.13 3.16
537 562 1.654137 GGCGTTGTTCGTGCAGTTG 60.654 57.895 0.00 0.00 42.13 3.16
538 563 1.654137 GCGTTGTTCGTGCAGTTGG 60.654 57.895 0.00 0.00 42.13 3.77
539 564 1.654137 CGTTGTTCGTGCAGTTGGC 60.654 57.895 0.00 0.00 45.13 4.52
557 582 3.319198 GGCGAGTGGGGTCAGGAA 61.319 66.667 0.00 0.00 0.00 3.36
558 583 2.266055 GCGAGTGGGGTCAGGAAG 59.734 66.667 0.00 0.00 0.00 3.46
559 584 2.982130 CGAGTGGGGTCAGGAAGG 59.018 66.667 0.00 0.00 0.00 3.46
560 585 1.609501 CGAGTGGGGTCAGGAAGGA 60.610 63.158 0.00 0.00 0.00 3.36
561 586 0.978146 CGAGTGGGGTCAGGAAGGAT 60.978 60.000 0.00 0.00 0.00 3.24
562 587 1.688311 CGAGTGGGGTCAGGAAGGATA 60.688 57.143 0.00 0.00 0.00 2.59
563 588 2.043227 GAGTGGGGTCAGGAAGGATAG 58.957 57.143 0.00 0.00 0.00 2.08
564 589 1.132500 GTGGGGTCAGGAAGGATAGG 58.868 60.000 0.00 0.00 0.00 2.57
565 590 1.023719 TGGGGTCAGGAAGGATAGGA 58.976 55.000 0.00 0.00 0.00 2.94
566 591 1.062121 TGGGGTCAGGAAGGATAGGAG 60.062 57.143 0.00 0.00 0.00 3.69
567 592 1.723288 GGGTCAGGAAGGATAGGAGG 58.277 60.000 0.00 0.00 0.00 4.30
568 593 1.052617 GGTCAGGAAGGATAGGAGGC 58.947 60.000 0.00 0.00 0.00 4.70
569 594 0.676736 GTCAGGAAGGATAGGAGGCG 59.323 60.000 0.00 0.00 0.00 5.52
570 595 0.556258 TCAGGAAGGATAGGAGGCGA 59.444 55.000 0.00 0.00 0.00 5.54
571 596 1.148027 TCAGGAAGGATAGGAGGCGAT 59.852 52.381 0.00 0.00 0.00 4.58
572 597 1.974236 CAGGAAGGATAGGAGGCGATT 59.026 52.381 0.00 0.00 0.00 3.34
573 598 1.974236 AGGAAGGATAGGAGGCGATTG 59.026 52.381 0.00 0.00 0.00 2.67
574 599 1.971357 GGAAGGATAGGAGGCGATTGA 59.029 52.381 0.00 0.00 0.00 2.57
575 600 2.569404 GGAAGGATAGGAGGCGATTGAT 59.431 50.000 0.00 0.00 0.00 2.57
576 601 3.008485 GGAAGGATAGGAGGCGATTGATT 59.992 47.826 0.00 0.00 0.00 2.57
577 602 4.223032 GGAAGGATAGGAGGCGATTGATTA 59.777 45.833 0.00 0.00 0.00 1.75
578 603 5.413309 AAGGATAGGAGGCGATTGATTAG 57.587 43.478 0.00 0.00 0.00 1.73
579 604 3.772025 AGGATAGGAGGCGATTGATTAGG 59.228 47.826 0.00 0.00 0.00 2.69
580 605 3.118592 GGATAGGAGGCGATTGATTAGGG 60.119 52.174 0.00 0.00 0.00 3.53
581 606 2.103153 AGGAGGCGATTGATTAGGGA 57.897 50.000 0.00 0.00 0.00 4.20
582 607 1.974236 AGGAGGCGATTGATTAGGGAG 59.026 52.381 0.00 0.00 0.00 4.30
583 608 1.971357 GGAGGCGATTGATTAGGGAGA 59.029 52.381 0.00 0.00 0.00 3.71
584 609 2.028567 GGAGGCGATTGATTAGGGAGAG 60.029 54.545 0.00 0.00 0.00 3.20
585 610 2.894126 GAGGCGATTGATTAGGGAGAGA 59.106 50.000 0.00 0.00 0.00 3.10
586 611 3.513515 GAGGCGATTGATTAGGGAGAGAT 59.486 47.826 0.00 0.00 0.00 2.75
587 612 3.906846 AGGCGATTGATTAGGGAGAGATT 59.093 43.478 0.00 0.00 0.00 2.40
588 613 5.087323 AGGCGATTGATTAGGGAGAGATTA 58.913 41.667 0.00 0.00 0.00 1.75
589 614 5.046950 AGGCGATTGATTAGGGAGAGATTAC 60.047 44.000 0.00 0.00 0.00 1.89
590 615 5.279506 GGCGATTGATTAGGGAGAGATTACA 60.280 44.000 0.00 0.00 0.00 2.41
591 616 6.402222 GCGATTGATTAGGGAGAGATTACAT 58.598 40.000 0.00 0.00 0.00 2.29
592 617 6.312426 GCGATTGATTAGGGAGAGATTACATG 59.688 42.308 0.00 0.00 0.00 3.21
593 618 6.312426 CGATTGATTAGGGAGAGATTACATGC 59.688 42.308 0.00 0.00 0.00 4.06
594 619 5.139435 TGATTAGGGAGAGATTACATGCG 57.861 43.478 0.00 0.00 0.00 4.73
595 620 4.021104 TGATTAGGGAGAGATTACATGCGG 60.021 45.833 0.00 0.00 0.00 5.69
596 621 1.051812 AGGGAGAGATTACATGCGGG 58.948 55.000 0.00 0.00 0.00 6.13
597 622 0.035458 GGGAGAGATTACATGCGGGG 59.965 60.000 0.00 0.00 0.00 5.73
598 623 0.035458 GGAGAGATTACATGCGGGGG 59.965 60.000 0.00 0.00 0.00 5.40
599 624 0.759346 GAGAGATTACATGCGGGGGT 59.241 55.000 0.00 0.00 0.00 4.95
600 625 1.141053 GAGAGATTACATGCGGGGGTT 59.859 52.381 0.00 0.00 0.00 4.11
601 626 1.134098 AGAGATTACATGCGGGGGTTG 60.134 52.381 0.00 0.00 0.00 3.77
602 627 0.751643 AGATTACATGCGGGGGTTGC 60.752 55.000 0.00 0.00 0.00 4.17
603 628 2.058829 GATTACATGCGGGGGTTGCG 62.059 60.000 0.00 0.00 34.24 4.85
604 629 4.787286 TACATGCGGGGGTTGCGG 62.787 66.667 0.00 0.00 34.24 5.69
610 635 4.733542 CGGGGGTTGCGGGATGTT 62.734 66.667 0.00 0.00 0.00 2.71
611 636 2.678470 GGGGGTTGCGGGATGTTA 59.322 61.111 0.00 0.00 0.00 2.41
612 637 1.229076 GGGGGTTGCGGGATGTTAT 59.771 57.895 0.00 0.00 0.00 1.89
613 638 0.396556 GGGGGTTGCGGGATGTTATT 60.397 55.000 0.00 0.00 0.00 1.40
614 639 1.480789 GGGGTTGCGGGATGTTATTT 58.519 50.000 0.00 0.00 0.00 1.40
615 640 1.407618 GGGGTTGCGGGATGTTATTTC 59.592 52.381 0.00 0.00 0.00 2.17
616 641 1.064952 GGGTTGCGGGATGTTATTTCG 59.935 52.381 0.00 0.00 0.00 3.46
617 642 1.064952 GGTTGCGGGATGTTATTTCGG 59.935 52.381 0.00 0.00 0.00 4.30
618 643 1.064952 GTTGCGGGATGTTATTTCGGG 59.935 52.381 0.00 0.00 0.00 5.14
619 644 1.098712 TGCGGGATGTTATTTCGGGC 61.099 55.000 0.00 0.00 0.00 6.13
620 645 1.792118 GCGGGATGTTATTTCGGGCC 61.792 60.000 0.00 0.00 0.00 5.80
621 646 1.503818 CGGGATGTTATTTCGGGCCG 61.504 60.000 22.51 22.51 0.00 6.13
622 647 0.179040 GGGATGTTATTTCGGGCCGA 60.179 55.000 27.46 27.46 0.00 5.54
623 648 1.670791 GGATGTTATTTCGGGCCGAA 58.329 50.000 35.71 35.71 44.28 4.30
624 649 1.602377 GGATGTTATTTCGGGCCGAAG 59.398 52.381 36.44 5.97 46.43 3.79
643 668 6.822073 CGAAGGGATTTTCGTTTTTCTTTT 57.178 33.333 0.36 0.00 43.60 2.27
644 669 7.229228 CGAAGGGATTTTCGTTTTTCTTTTT 57.771 32.000 0.36 0.00 43.60 1.94
677 702 2.961526 ACATTCCGTGAGCGTTAGAT 57.038 45.000 0.00 0.00 36.15 1.98
678 703 3.247006 ACATTCCGTGAGCGTTAGATT 57.753 42.857 0.00 0.00 36.15 2.40
679 704 3.187700 ACATTCCGTGAGCGTTAGATTC 58.812 45.455 0.00 0.00 36.15 2.52
680 705 3.186909 CATTCCGTGAGCGTTAGATTCA 58.813 45.455 0.00 0.00 36.15 2.57
681 706 3.306917 TTCCGTGAGCGTTAGATTCAA 57.693 42.857 0.00 0.00 36.15 2.69
682 707 2.876091 TCCGTGAGCGTTAGATTCAAG 58.124 47.619 0.00 0.00 36.15 3.02
683 708 1.324736 CCGTGAGCGTTAGATTCAAGC 59.675 52.381 0.00 0.00 36.15 4.01
684 709 2.263077 CGTGAGCGTTAGATTCAAGCT 58.737 47.619 0.00 0.00 41.29 3.74
685 710 3.435566 CGTGAGCGTTAGATTCAAGCTA 58.564 45.455 0.00 0.00 38.39 3.32
686 711 3.857665 CGTGAGCGTTAGATTCAAGCTAA 59.142 43.478 0.00 0.00 38.39 3.09
687 712 4.326278 CGTGAGCGTTAGATTCAAGCTAAA 59.674 41.667 0.00 0.00 38.39 1.85
688 713 5.005779 CGTGAGCGTTAGATTCAAGCTAAAT 59.994 40.000 0.00 0.00 38.39 1.40
689 714 6.414890 GTGAGCGTTAGATTCAAGCTAAATC 58.585 40.000 11.89 11.89 38.39 2.17
690 715 6.036083 GTGAGCGTTAGATTCAAGCTAAATCA 59.964 38.462 18.78 0.02 38.39 2.57
691 716 6.593770 TGAGCGTTAGATTCAAGCTAAATCAA 59.406 34.615 18.78 10.99 38.39 2.57
692 717 6.776094 AGCGTTAGATTCAAGCTAAATCAAC 58.224 36.000 18.78 17.50 35.92 3.18
693 718 5.672856 GCGTTAGATTCAAGCTAAATCAACG 59.327 40.000 27.71 27.71 42.43 4.10
694 719 6.185399 CGTTAGATTCAAGCTAAATCAACGG 58.815 40.000 26.38 18.20 39.90 4.44
695 720 4.622701 AGATTCAAGCTAAATCAACGGC 57.377 40.909 18.78 0.00 35.92 5.68
696 721 3.378427 AGATTCAAGCTAAATCAACGGCC 59.622 43.478 18.78 0.00 35.92 6.13
697 722 2.192664 TCAAGCTAAATCAACGGCCA 57.807 45.000 2.24 0.00 0.00 5.36
698 723 2.722094 TCAAGCTAAATCAACGGCCAT 58.278 42.857 2.24 0.00 0.00 4.40
699 724 3.088532 TCAAGCTAAATCAACGGCCATT 58.911 40.909 2.24 0.00 0.00 3.16
700 725 3.119531 TCAAGCTAAATCAACGGCCATTG 60.120 43.478 4.85 4.85 0.00 2.82
701 726 2.722094 AGCTAAATCAACGGCCATTGA 58.278 42.857 17.83 17.83 42.62 2.57
702 727 2.423538 AGCTAAATCAACGGCCATTGAC 59.576 45.455 17.89 3.52 41.29 3.18
703 728 2.423538 GCTAAATCAACGGCCATTGACT 59.576 45.455 17.89 1.99 41.29 3.41
704 729 3.731867 GCTAAATCAACGGCCATTGACTG 60.732 47.826 17.89 8.31 41.29 3.51
710 735 4.326255 GGCCATTGACTGGTCTGG 57.674 61.111 0.00 3.90 46.85 3.86
711 736 2.048603 GGCCATTGACTGGTCTGGC 61.049 63.158 19.34 19.34 46.85 4.85
712 737 3.895025 CCATTGACTGGTCTGGCG 58.105 61.111 2.38 0.00 40.49 5.69
713 738 2.401766 CCATTGACTGGTCTGGCGC 61.402 63.158 0.00 0.00 40.49 6.53
714 739 1.376424 CATTGACTGGTCTGGCGCT 60.376 57.895 7.64 0.00 0.00 5.92
715 740 1.078848 ATTGACTGGTCTGGCGCTC 60.079 57.895 7.64 0.00 0.00 5.03
716 741 2.842394 ATTGACTGGTCTGGCGCTCG 62.842 60.000 7.64 0.00 0.00 5.03
717 742 4.057428 GACTGGTCTGGCGCTCGT 62.057 66.667 7.64 0.00 0.00 4.18
718 743 3.973267 GACTGGTCTGGCGCTCGTC 62.973 68.421 7.64 0.08 0.00 4.20
719 744 3.753434 CTGGTCTGGCGCTCGTCT 61.753 66.667 7.64 0.00 0.00 4.18
720 745 3.691744 CTGGTCTGGCGCTCGTCTC 62.692 68.421 7.64 0.00 0.00 3.36
721 746 4.500116 GGTCTGGCGCTCGTCTCC 62.500 72.222 7.64 0.00 0.00 3.71
722 747 3.444805 GTCTGGCGCTCGTCTCCT 61.445 66.667 7.64 0.00 0.00 3.69
723 748 2.113433 GTCTGGCGCTCGTCTCCTA 61.113 63.158 7.64 0.00 0.00 2.94
724 749 2.113433 TCTGGCGCTCGTCTCCTAC 61.113 63.158 7.64 0.00 0.00 3.18
725 750 3.127352 CTGGCGCTCGTCTCCTACC 62.127 68.421 7.64 0.00 0.00 3.18
726 751 3.138798 GGCGCTCGTCTCCTACCA 61.139 66.667 7.64 0.00 0.00 3.25
727 752 2.409651 GCGCTCGTCTCCTACCAG 59.590 66.667 0.00 0.00 0.00 4.00
728 753 2.113433 GCGCTCGTCTCCTACCAGA 61.113 63.158 0.00 0.00 0.00 3.86
729 754 1.722677 CGCTCGTCTCCTACCAGAC 59.277 63.158 0.00 0.00 39.68 3.51
730 755 0.745128 CGCTCGTCTCCTACCAGACT 60.745 60.000 0.00 0.00 40.75 3.24
731 756 1.472904 CGCTCGTCTCCTACCAGACTA 60.473 57.143 0.00 0.00 40.75 2.59
732 757 1.941975 GCTCGTCTCCTACCAGACTAC 59.058 57.143 0.00 0.00 40.75 2.73
733 758 2.680221 GCTCGTCTCCTACCAGACTACA 60.680 54.545 0.00 0.00 40.75 2.74
734 759 3.199677 CTCGTCTCCTACCAGACTACAG 58.800 54.545 0.00 0.00 40.75 2.74
735 760 2.836372 TCGTCTCCTACCAGACTACAGA 59.164 50.000 0.00 0.00 40.75 3.41
736 761 3.455177 TCGTCTCCTACCAGACTACAGAT 59.545 47.826 0.00 0.00 40.75 2.90
737 762 4.652881 TCGTCTCCTACCAGACTACAGATA 59.347 45.833 0.00 0.00 40.75 1.98
738 763 4.992319 CGTCTCCTACCAGACTACAGATAG 59.008 50.000 0.00 0.00 40.75 2.08
739 764 5.310451 GTCTCCTACCAGACTACAGATAGG 58.690 50.000 0.00 0.00 39.91 2.57
740 765 5.072058 GTCTCCTACCAGACTACAGATAGGA 59.928 48.000 0.00 0.00 39.91 2.94
741 766 5.670818 TCTCCTACCAGACTACAGATAGGAA 59.329 44.000 0.00 0.00 38.14 3.36
742 767 5.942961 TCCTACCAGACTACAGATAGGAAG 58.057 45.833 0.00 0.00 36.19 3.46
743 768 5.432390 TCCTACCAGACTACAGATAGGAAGT 59.568 44.000 0.00 0.00 36.19 3.01
744 769 5.533154 CCTACCAGACTACAGATAGGAAGTG 59.467 48.000 0.00 0.00 32.47 3.16
745 770 4.936802 ACCAGACTACAGATAGGAAGTGT 58.063 43.478 0.00 0.00 32.08 3.55
746 771 5.334421 ACCAGACTACAGATAGGAAGTGTT 58.666 41.667 0.00 0.00 32.08 3.32
747 772 5.780793 ACCAGACTACAGATAGGAAGTGTTT 59.219 40.000 0.00 0.00 32.08 2.83
748 773 6.071278 ACCAGACTACAGATAGGAAGTGTTTC 60.071 42.308 0.00 0.00 32.08 2.78
819 845 2.576648 ACAATTCCCACTTACTCCTCCC 59.423 50.000 0.00 0.00 0.00 4.30
835 861 1.288932 CTCCCACCCAATCTCCCAATT 59.711 52.381 0.00 0.00 0.00 2.32
857 890 1.526917 CCATCGGTTCCCTCATGCC 60.527 63.158 0.00 0.00 0.00 4.40
909 952 0.886490 ACCACTTCTTGCCAGCTTCG 60.886 55.000 0.00 0.00 0.00 3.79
950 993 2.332654 ACGGCGACCAAAAGATGCC 61.333 57.895 16.62 0.00 42.29 4.40
951 994 2.040544 CGGCGACCAAAAGATGCCT 61.041 57.895 0.00 0.00 43.54 4.75
967 1075 1.343075 TGCCTCTCCTTCCTACCGAAT 60.343 52.381 0.00 0.00 0.00 3.34
988 1096 1.307343 CCACCCTCTCATGTCCCCT 60.307 63.158 0.00 0.00 0.00 4.79
989 1097 1.341156 CCACCCTCTCATGTCCCCTC 61.341 65.000 0.00 0.00 0.00 4.30
990 1098 1.003573 ACCCTCTCATGTCCCCTCC 59.996 63.158 0.00 0.00 0.00 4.30
991 1099 1.768077 CCCTCTCATGTCCCCTCCC 60.768 68.421 0.00 0.00 0.00 4.30
992 1100 1.768077 CCTCTCATGTCCCCTCCCC 60.768 68.421 0.00 0.00 0.00 4.81
993 1101 1.768077 CTCTCATGTCCCCTCCCCC 60.768 68.421 0.00 0.00 0.00 5.40
1091 1219 3.305471 CCGGTCTTCTTCTTCGACTTCTT 60.305 47.826 0.00 0.00 0.00 2.52
1092 1220 3.670991 CGGTCTTCTTCTTCGACTTCTTG 59.329 47.826 0.00 0.00 0.00 3.02
1093 1221 3.991121 GGTCTTCTTCTTCGACTTCTTGG 59.009 47.826 0.00 0.00 0.00 3.61
1149 1278 6.601217 AGATTCTTTTCCATTCTTGAGCTACC 59.399 38.462 0.00 0.00 0.00 3.18
1205 1336 2.286523 CGGGCAGACTTCCCTCAGT 61.287 63.158 8.66 0.00 41.69 3.41
1313 1444 3.064207 CAGGAAAAATCACGAGGTCGAA 58.936 45.455 6.35 0.00 43.02 3.71
1353 1484 4.052229 ACGTGGGCGAGGAGAACG 62.052 66.667 0.00 0.00 42.00 3.95
1363 1494 1.950973 GAGGAGAACGGGAGGCTCAC 61.951 65.000 17.69 12.63 37.20 3.51
1430 1561 2.515523 GTCAGCGGCATGATGGCT 60.516 61.111 17.13 3.86 41.25 4.75
1652 1783 2.045926 GTCCACGAGCCCTGCAAT 60.046 61.111 0.00 0.00 0.00 3.56
1715 1846 1.080772 CAAGCTCTACGTCCACGCA 60.081 57.895 0.00 0.00 44.43 5.24
1759 1890 2.814280 AGTAACGAACAGACACCCAG 57.186 50.000 0.00 0.00 0.00 4.45
1787 1918 1.835494 TCCGTTCATCGTCTTCCTCT 58.165 50.000 0.00 0.00 37.94 3.69
1799 1935 5.063880 TCGTCTTCCTCTTGATCATCGATA 58.936 41.667 0.00 0.00 0.00 2.92
1922 2073 1.147600 GACCAAGGACAACCCGTGT 59.852 57.895 0.00 0.00 45.74 4.49
1949 2100 1.734163 CCTATTTCCGGTGCTCGTTT 58.266 50.000 0.00 0.00 37.11 3.60
2066 2217 2.956987 CCCAAGCAACAAGGCTCG 59.043 61.111 0.00 0.00 45.07 5.03
2179 2337 1.333177 GAGCAGGTGGACGATAGGAT 58.667 55.000 0.00 0.00 43.77 3.24
2256 2553 1.883544 CTCGTCTCCGCGCTCTCTA 60.884 63.158 5.56 0.00 0.00 2.43
2309 2611 3.323403 GCCAGCACAGGAGAATATACTCT 59.677 47.826 0.00 0.00 37.13 3.24
2343 2645 1.131883 CAAGATAGTTGTGCTGCTGGC 59.868 52.381 0.00 0.00 42.22 4.85
2344 2646 0.393537 AGATAGTTGTGCTGCTGGCC 60.394 55.000 0.00 0.00 40.92 5.36
2382 5688 3.408501 CTCAGCTCTGACTCGCGGG 62.409 68.421 3.27 3.27 35.46 6.13
2386 5692 3.842923 CTCTGACTCGCGGGGCAT 61.843 66.667 18.83 0.00 0.00 4.40
2387 5693 4.147449 TCTGACTCGCGGGGCATG 62.147 66.667 18.83 10.42 0.00 4.06
2396 5702 3.508840 CGGGGCATGCGGAGTTTC 61.509 66.667 12.44 0.00 0.00 2.78
2397 5703 2.044946 GGGGCATGCGGAGTTTCT 60.045 61.111 12.44 0.00 0.00 2.52
2398 5704 2.409870 GGGGCATGCGGAGTTTCTG 61.410 63.158 12.44 0.00 0.00 3.02
2467 5865 5.416271 TTTTTAAGATAGAGAGCCGGTGT 57.584 39.130 1.90 0.00 0.00 4.16
2490 5888 1.447838 CTTGCACCTACGGCGACAT 60.448 57.895 16.62 0.00 0.00 3.06
2737 6135 2.359900 GCGAAACCAGTGGAGATCATT 58.640 47.619 18.40 0.00 0.00 2.57
2851 6467 7.093322 AGTGAATATTTTGAGCAGTTCATCC 57.907 36.000 0.00 0.00 35.27 3.51
2855 6471 3.988379 TTTTGAGCAGTTCATCCACAC 57.012 42.857 0.00 0.00 35.27 3.82
2902 6518 2.544685 AGTGAGCGTATGAACTGATGC 58.455 47.619 0.00 0.00 0.00 3.91
2913 6529 6.904011 CGTATGAACTGATGCTGAATTTTCTC 59.096 38.462 0.00 0.00 0.00 2.87
3119 6738 5.997746 GTCCTGGAAATATCGAATGAATCCA 59.002 40.000 0.00 9.16 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.933906 GCGACAAGTAATTCCGAATGGA 59.066 45.455 0.00 0.00 44.61 3.41
46 47 2.675844 TGCGACAAGTAATTCCGAATGG 59.324 45.455 0.00 0.00 0.00 3.16
47 48 3.616821 TCTGCGACAAGTAATTCCGAATG 59.383 43.478 0.00 0.00 0.00 2.67
48 49 3.857052 TCTGCGACAAGTAATTCCGAAT 58.143 40.909 0.00 0.00 0.00 3.34
49 50 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
50 51 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
51 52 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
52 53 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
53 54 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
54 55 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
55 56 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
56 57 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
57 58 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
58 59 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
59 60 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
60 61 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
61 62 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
62 63 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
63 64 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
64 65 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
65 66 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
66 67 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
93 94 9.842775 TCTCGGAAATAGATGTAACTAGAACTA 57.157 33.333 0.00 0.00 0.00 2.24
94 95 8.623030 GTCTCGGAAATAGATGTAACTAGAACT 58.377 37.037 0.00 0.00 0.00 3.01
95 96 8.404000 TGTCTCGGAAATAGATGTAACTAGAAC 58.596 37.037 0.00 0.00 0.00 3.01
96 97 8.515695 TGTCTCGGAAATAGATGTAACTAGAA 57.484 34.615 0.00 0.00 0.00 2.10
97 98 8.515695 TTGTCTCGGAAATAGATGTAACTAGA 57.484 34.615 0.00 0.00 0.00 2.43
98 99 8.407064 ACTTGTCTCGGAAATAGATGTAACTAG 58.593 37.037 0.00 0.00 0.00 2.57
99 100 8.289939 ACTTGTCTCGGAAATAGATGTAACTA 57.710 34.615 0.00 0.00 0.00 2.24
100 101 7.171630 ACTTGTCTCGGAAATAGATGTAACT 57.828 36.000 0.00 0.00 0.00 2.24
101 102 8.922058 TTACTTGTCTCGGAAATAGATGTAAC 57.078 34.615 0.00 0.00 0.00 2.50
103 104 9.745880 GAATTACTTGTCTCGGAAATAGATGTA 57.254 33.333 0.00 0.00 0.00 2.29
104 105 7.711339 GGAATTACTTGTCTCGGAAATAGATGT 59.289 37.037 0.00 0.00 0.00 3.06
105 106 7.096023 CGGAATTACTTGTCTCGGAAATAGATG 60.096 40.741 0.00 0.00 0.00 2.90
106 107 6.924060 CGGAATTACTTGTCTCGGAAATAGAT 59.076 38.462 0.00 0.00 0.00 1.98
107 108 6.095860 TCGGAATTACTTGTCTCGGAAATAGA 59.904 38.462 0.00 0.00 0.00 1.98
108 109 6.270815 TCGGAATTACTTGTCTCGGAAATAG 58.729 40.000 0.00 0.00 0.00 1.73
109 110 6.211587 TCGGAATTACTTGTCTCGGAAATA 57.788 37.500 0.00 0.00 0.00 1.40
110 111 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
111 112 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
112 113 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
113 114 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
114 115 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
115 116 3.495193 TCGTTCGGAATTACTTGTCTCG 58.505 45.455 0.00 0.00 0.00 4.04
116 117 4.326548 CCTTCGTTCGGAATTACTTGTCTC 59.673 45.833 0.00 0.00 33.26 3.36
117 118 4.243270 CCTTCGTTCGGAATTACTTGTCT 58.757 43.478 0.00 0.00 33.26 3.41
118 119 3.370061 CCCTTCGTTCGGAATTACTTGTC 59.630 47.826 0.00 0.00 33.26 3.18
119 120 3.007182 TCCCTTCGTTCGGAATTACTTGT 59.993 43.478 0.00 0.00 33.26 3.16
120 121 3.592059 TCCCTTCGTTCGGAATTACTTG 58.408 45.455 0.00 0.00 33.26 3.16
121 122 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
122 123 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
123 124 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
124 125 3.131046 GGTACTCCCTTCGTTCGGAATTA 59.869 47.826 0.00 0.00 33.26 1.40
125 126 2.093816 GGTACTCCCTTCGTTCGGAATT 60.094 50.000 0.00 0.00 33.26 2.17
126 127 1.479730 GGTACTCCCTTCGTTCGGAAT 59.520 52.381 0.00 0.00 33.26 3.01
127 128 0.890683 GGTACTCCCTTCGTTCGGAA 59.109 55.000 0.00 0.00 0.00 4.30
128 129 0.251297 TGGTACTCCCTTCGTTCGGA 60.251 55.000 0.00 0.00 0.00 4.55
129 130 0.108945 GTGGTACTCCCTTCGTTCGG 60.109 60.000 0.00 0.00 0.00 4.30
130 131 0.599558 TGTGGTACTCCCTTCGTTCG 59.400 55.000 0.00 0.00 0.00 3.95
131 132 4.159135 TCTTATGTGGTACTCCCTTCGTTC 59.841 45.833 0.00 0.00 0.00 3.95
132 133 4.091549 TCTTATGTGGTACTCCCTTCGTT 58.908 43.478 0.00 0.00 0.00 3.85
133 134 3.705051 TCTTATGTGGTACTCCCTTCGT 58.295 45.455 0.00 0.00 0.00 3.85
134 135 4.730949 TTCTTATGTGGTACTCCCTTCG 57.269 45.455 0.00 0.00 0.00 3.79
135 136 6.235231 TGATTCTTATGTGGTACTCCCTTC 57.765 41.667 0.00 0.00 0.00 3.46
136 137 6.636454 TTGATTCTTATGTGGTACTCCCTT 57.364 37.500 0.00 0.00 0.00 3.95
137 138 6.386927 TGATTGATTCTTATGTGGTACTCCCT 59.613 38.462 0.00 0.00 0.00 4.20
138 139 6.591935 TGATTGATTCTTATGTGGTACTCCC 58.408 40.000 0.00 0.00 0.00 4.30
139 140 9.778741 TTATGATTGATTCTTATGTGGTACTCC 57.221 33.333 0.00 0.00 0.00 3.85
203 204 4.214119 AGTTGATTCAATGTGTGTTCCTCG 59.786 41.667 1.78 0.00 0.00 4.63
242 245 2.969238 CGATCCCATGGTGAGCGC 60.969 66.667 22.00 0.00 34.70 5.92
307 310 2.279851 CGACCGCAACCTGACACA 60.280 61.111 0.00 0.00 0.00 3.72
315 318 1.959226 ATGACACCACGACCGCAAC 60.959 57.895 0.00 0.00 0.00 4.17
361 365 1.016130 CACCTCCACGACACTCATGC 61.016 60.000 0.00 0.00 0.00 4.06
411 436 0.254747 CTCACCGGCCAATCCCTTTA 59.745 55.000 0.00 0.00 0.00 1.85
418 443 3.256960 ACCACCTCACCGGCCAAT 61.257 61.111 0.00 0.00 35.61 3.16
419 444 3.948719 GACCACCTCACCGGCCAA 61.949 66.667 0.00 0.00 35.61 4.52
424 449 3.991051 AGCACGACCACCTCACCG 61.991 66.667 0.00 0.00 0.00 4.94
425 450 2.357517 CAGCACGACCACCTCACC 60.358 66.667 0.00 0.00 0.00 4.02
426 451 3.044305 GCAGCACGACCACCTCAC 61.044 66.667 0.00 0.00 0.00 3.51
427 452 3.226429 GAGCAGCACGACCACCTCA 62.226 63.158 0.00 0.00 0.00 3.86
428 453 2.433318 GAGCAGCACGACCACCTC 60.433 66.667 0.00 0.00 0.00 3.85
429 454 4.363990 CGAGCAGCACGACCACCT 62.364 66.667 6.34 0.00 0.00 4.00
430 455 4.357947 TCGAGCAGCACGACCACC 62.358 66.667 11.18 0.00 34.85 4.61
435 460 2.729491 CGTTGTCGAGCAGCACGA 60.729 61.111 11.18 11.18 39.71 4.35
436 461 2.729491 TCGTTGTCGAGCAGCACG 60.729 61.111 5.80 5.80 41.35 5.34
445 470 1.531264 CCTCTACCGTCATCGTTGTCG 60.531 57.143 6.21 6.21 34.74 4.35
446 471 1.202268 CCCTCTACCGTCATCGTTGTC 60.202 57.143 0.00 0.00 35.01 3.18
447 472 0.815734 CCCTCTACCGTCATCGTTGT 59.184 55.000 0.00 0.00 35.01 3.32
448 473 1.065701 CTCCCTCTACCGTCATCGTTG 59.934 57.143 0.00 0.00 35.01 4.10
449 474 1.390565 CTCCCTCTACCGTCATCGTT 58.609 55.000 0.00 0.00 35.01 3.85
450 475 0.465824 CCTCCCTCTACCGTCATCGT 60.466 60.000 0.00 0.00 35.01 3.73
451 476 1.797211 GCCTCCCTCTACCGTCATCG 61.797 65.000 0.00 0.00 0.00 3.84
452 477 1.797211 CGCCTCCCTCTACCGTCATC 61.797 65.000 0.00 0.00 0.00 2.92
453 478 1.828660 CGCCTCCCTCTACCGTCAT 60.829 63.158 0.00 0.00 0.00 3.06
454 479 2.439701 CGCCTCCCTCTACCGTCA 60.440 66.667 0.00 0.00 0.00 4.35
455 480 3.217743 CCGCCTCCCTCTACCGTC 61.218 72.222 0.00 0.00 0.00 4.79
456 481 4.835891 CCCGCCTCCCTCTACCGT 62.836 72.222 0.00 0.00 0.00 4.83
457 482 4.835891 ACCCGCCTCCCTCTACCG 62.836 72.222 0.00 0.00 0.00 4.02
458 483 3.155167 CACCCGCCTCCCTCTACC 61.155 72.222 0.00 0.00 0.00 3.18
459 484 3.851128 GCACCCGCCTCCCTCTAC 61.851 72.222 0.00 0.00 0.00 2.59
477 502 3.642778 TTCTACGCCTGCCTCGCAC 62.643 63.158 0.00 0.00 33.79 5.34
478 503 3.356639 CTTCTACGCCTGCCTCGCA 62.357 63.158 0.00 0.00 36.92 5.10
479 504 2.583593 CTTCTACGCCTGCCTCGC 60.584 66.667 0.00 0.00 0.00 5.03
480 505 2.583593 GCTTCTACGCCTGCCTCG 60.584 66.667 0.00 0.00 0.00 4.63
481 506 2.202946 GGCTTCTACGCCTGCCTC 60.203 66.667 0.00 0.00 46.63 4.70
487 512 0.241481 CCTAGATCGGCTTCTACGCC 59.759 60.000 0.00 0.00 46.68 5.68
488 513 0.387494 GCCTAGATCGGCTTCTACGC 60.387 60.000 4.50 0.00 46.63 4.42
489 514 3.777016 GCCTAGATCGGCTTCTACG 57.223 57.895 4.50 0.00 46.63 3.51
496 521 4.708968 CGCCTCGCCTAGATCGGC 62.709 72.222 1.72 1.72 46.68 5.54
497 522 2.972144 CTCGCCTCGCCTAGATCGG 61.972 68.421 0.00 0.00 0.00 4.18
498 523 2.558821 CTCGCCTCGCCTAGATCG 59.441 66.667 0.00 0.00 0.00 3.69
499 524 2.257067 GCTCGCCTCGCCTAGATC 59.743 66.667 0.00 0.00 0.00 2.75
500 525 2.203422 AGCTCGCCTCGCCTAGAT 60.203 61.111 0.00 0.00 0.00 1.98
501 526 3.212682 CAGCTCGCCTCGCCTAGA 61.213 66.667 0.00 0.00 0.00 2.43
502 527 4.277593 CCAGCTCGCCTCGCCTAG 62.278 72.222 0.00 0.00 0.00 3.02
511 536 4.090057 GAACAACGCCCAGCTCGC 62.090 66.667 0.00 0.00 0.00 5.03
512 537 3.777925 CGAACAACGCCCAGCTCG 61.778 66.667 0.00 0.00 34.51 5.03
513 538 2.665185 ACGAACAACGCCCAGCTC 60.665 61.111 0.00 0.00 46.94 4.09
514 539 2.972505 CACGAACAACGCCCAGCT 60.973 61.111 0.00 0.00 46.94 4.24
515 540 4.683334 GCACGAACAACGCCCAGC 62.683 66.667 0.00 0.00 46.94 4.85
516 541 3.240606 CTGCACGAACAACGCCCAG 62.241 63.158 0.00 0.00 46.94 4.45
517 542 3.276091 CTGCACGAACAACGCCCA 61.276 61.111 0.00 0.00 46.94 5.36
518 543 2.830285 AACTGCACGAACAACGCCC 61.830 57.895 0.00 0.00 46.94 6.13
519 544 1.654137 CAACTGCACGAACAACGCC 60.654 57.895 0.00 0.00 46.94 5.68
520 545 1.654137 CCAACTGCACGAACAACGC 60.654 57.895 0.00 0.00 46.94 4.84
522 547 1.654137 CGCCAACTGCACGAACAAC 60.654 57.895 0.00 0.00 41.33 3.32
523 548 2.712539 CGCCAACTGCACGAACAA 59.287 55.556 0.00 0.00 41.33 2.83
524 549 3.276091 CCGCCAACTGCACGAACA 61.276 61.111 0.00 0.00 41.33 3.18
525 550 4.683334 GCCGCCAACTGCACGAAC 62.683 66.667 0.00 0.00 41.33 3.95
540 565 3.316573 CTTCCTGACCCCACTCGCC 62.317 68.421 0.00 0.00 0.00 5.54
541 566 2.266055 CTTCCTGACCCCACTCGC 59.734 66.667 0.00 0.00 0.00 5.03
542 567 0.978146 ATCCTTCCTGACCCCACTCG 60.978 60.000 0.00 0.00 0.00 4.18
543 568 2.043227 CTATCCTTCCTGACCCCACTC 58.957 57.143 0.00 0.00 0.00 3.51
544 569 1.344496 CCTATCCTTCCTGACCCCACT 60.344 57.143 0.00 0.00 0.00 4.00
545 570 1.132500 CCTATCCTTCCTGACCCCAC 58.868 60.000 0.00 0.00 0.00 4.61
546 571 1.023719 TCCTATCCTTCCTGACCCCA 58.976 55.000 0.00 0.00 0.00 4.96
547 572 1.723288 CTCCTATCCTTCCTGACCCC 58.277 60.000 0.00 0.00 0.00 4.95
548 573 1.723288 CCTCCTATCCTTCCTGACCC 58.277 60.000 0.00 0.00 0.00 4.46
549 574 1.052617 GCCTCCTATCCTTCCTGACC 58.947 60.000 0.00 0.00 0.00 4.02
550 575 0.676736 CGCCTCCTATCCTTCCTGAC 59.323 60.000 0.00 0.00 0.00 3.51
551 576 0.556258 TCGCCTCCTATCCTTCCTGA 59.444 55.000 0.00 0.00 0.00 3.86
552 577 1.638529 ATCGCCTCCTATCCTTCCTG 58.361 55.000 0.00 0.00 0.00 3.86
553 578 1.974236 CAATCGCCTCCTATCCTTCCT 59.026 52.381 0.00 0.00 0.00 3.36
554 579 1.971357 TCAATCGCCTCCTATCCTTCC 59.029 52.381 0.00 0.00 0.00 3.46
555 580 3.971245 ATCAATCGCCTCCTATCCTTC 57.029 47.619 0.00 0.00 0.00 3.46
556 581 4.223923 CCTAATCAATCGCCTCCTATCCTT 59.776 45.833 0.00 0.00 0.00 3.36
557 582 3.772025 CCTAATCAATCGCCTCCTATCCT 59.228 47.826 0.00 0.00 0.00 3.24
558 583 3.118592 CCCTAATCAATCGCCTCCTATCC 60.119 52.174 0.00 0.00 0.00 2.59
559 584 3.769844 TCCCTAATCAATCGCCTCCTATC 59.230 47.826 0.00 0.00 0.00 2.08
560 585 3.772025 CTCCCTAATCAATCGCCTCCTAT 59.228 47.826 0.00 0.00 0.00 2.57
561 586 3.165875 CTCCCTAATCAATCGCCTCCTA 58.834 50.000 0.00 0.00 0.00 2.94
562 587 1.974236 CTCCCTAATCAATCGCCTCCT 59.026 52.381 0.00 0.00 0.00 3.69
563 588 1.971357 TCTCCCTAATCAATCGCCTCC 59.029 52.381 0.00 0.00 0.00 4.30
564 589 2.894126 TCTCTCCCTAATCAATCGCCTC 59.106 50.000 0.00 0.00 0.00 4.70
565 590 2.964209 TCTCTCCCTAATCAATCGCCT 58.036 47.619 0.00 0.00 0.00 5.52
566 591 3.971245 ATCTCTCCCTAATCAATCGCC 57.029 47.619 0.00 0.00 0.00 5.54
567 592 5.784177 TGTAATCTCTCCCTAATCAATCGC 58.216 41.667 0.00 0.00 0.00 4.58
568 593 6.312426 GCATGTAATCTCTCCCTAATCAATCG 59.688 42.308 0.00 0.00 0.00 3.34
569 594 6.312426 CGCATGTAATCTCTCCCTAATCAATC 59.688 42.308 0.00 0.00 0.00 2.67
570 595 6.169094 CGCATGTAATCTCTCCCTAATCAAT 58.831 40.000 0.00 0.00 0.00 2.57
571 596 5.511373 CCGCATGTAATCTCTCCCTAATCAA 60.511 44.000 0.00 0.00 0.00 2.57
572 597 4.021104 CCGCATGTAATCTCTCCCTAATCA 60.021 45.833 0.00 0.00 0.00 2.57
573 598 4.499183 CCGCATGTAATCTCTCCCTAATC 58.501 47.826 0.00 0.00 0.00 1.75
574 599 3.261897 CCCGCATGTAATCTCTCCCTAAT 59.738 47.826 0.00 0.00 0.00 1.73
575 600 2.632996 CCCGCATGTAATCTCTCCCTAA 59.367 50.000 0.00 0.00 0.00 2.69
576 601 2.248248 CCCGCATGTAATCTCTCCCTA 58.752 52.381 0.00 0.00 0.00 3.53
577 602 1.051812 CCCGCATGTAATCTCTCCCT 58.948 55.000 0.00 0.00 0.00 4.20
578 603 0.035458 CCCCGCATGTAATCTCTCCC 59.965 60.000 0.00 0.00 0.00 4.30
579 604 0.035458 CCCCCGCATGTAATCTCTCC 59.965 60.000 0.00 0.00 0.00 3.71
580 605 0.759346 ACCCCCGCATGTAATCTCTC 59.241 55.000 0.00 0.00 0.00 3.20
581 606 1.134098 CAACCCCCGCATGTAATCTCT 60.134 52.381 0.00 0.00 0.00 3.10
582 607 1.308998 CAACCCCCGCATGTAATCTC 58.691 55.000 0.00 0.00 0.00 2.75
583 608 0.751643 GCAACCCCCGCATGTAATCT 60.752 55.000 0.00 0.00 0.00 2.40
584 609 1.733526 GCAACCCCCGCATGTAATC 59.266 57.895 0.00 0.00 0.00 1.75
585 610 2.118404 CGCAACCCCCGCATGTAAT 61.118 57.895 0.00 0.00 0.00 1.89
586 611 2.748251 CGCAACCCCCGCATGTAA 60.748 61.111 0.00 0.00 0.00 2.41
587 612 4.787286 CCGCAACCCCCGCATGTA 62.787 66.667 0.00 0.00 0.00 2.29
593 618 2.618368 ATAACATCCCGCAACCCCCG 62.618 60.000 0.00 0.00 0.00 5.73
594 619 0.396556 AATAACATCCCGCAACCCCC 60.397 55.000 0.00 0.00 0.00 5.40
595 620 1.407618 GAAATAACATCCCGCAACCCC 59.592 52.381 0.00 0.00 0.00 4.95
596 621 1.064952 CGAAATAACATCCCGCAACCC 59.935 52.381 0.00 0.00 0.00 4.11
597 622 1.064952 CCGAAATAACATCCCGCAACC 59.935 52.381 0.00 0.00 0.00 3.77
598 623 1.064952 CCCGAAATAACATCCCGCAAC 59.935 52.381 0.00 0.00 0.00 4.17
599 624 1.384525 CCCGAAATAACATCCCGCAA 58.615 50.000 0.00 0.00 0.00 4.85
600 625 1.098712 GCCCGAAATAACATCCCGCA 61.099 55.000 0.00 0.00 0.00 5.69
601 626 1.652563 GCCCGAAATAACATCCCGC 59.347 57.895 0.00 0.00 0.00 6.13
602 627 1.503818 CGGCCCGAAATAACATCCCG 61.504 60.000 0.00 0.00 0.00 5.14
603 628 0.179040 TCGGCCCGAAATAACATCCC 60.179 55.000 1.70 0.00 31.06 3.85
604 629 1.602377 CTTCGGCCCGAAATAACATCC 59.398 52.381 20.54 0.00 45.23 3.51
605 630 1.602377 CCTTCGGCCCGAAATAACATC 59.398 52.381 20.54 0.00 45.23 3.06
606 631 1.675552 CCTTCGGCCCGAAATAACAT 58.324 50.000 20.54 0.00 45.23 2.71
607 632 0.393267 CCCTTCGGCCCGAAATAACA 60.393 55.000 20.54 0.00 45.23 2.41
608 633 0.107557 TCCCTTCGGCCCGAAATAAC 60.108 55.000 20.54 0.00 45.23 1.89
609 634 0.841289 ATCCCTTCGGCCCGAAATAA 59.159 50.000 20.54 8.05 45.23 1.40
610 635 0.841289 AATCCCTTCGGCCCGAAATA 59.159 50.000 20.54 8.41 45.23 1.40
611 636 0.033503 AAATCCCTTCGGCCCGAAAT 60.034 50.000 20.54 7.90 45.23 2.17
612 637 0.251430 AAAATCCCTTCGGCCCGAAA 60.251 50.000 20.54 5.53 45.23 3.46
613 638 0.678684 GAAAATCCCTTCGGCCCGAA 60.679 55.000 18.97 18.97 43.75 4.30
614 639 1.078001 GAAAATCCCTTCGGCCCGA 60.078 57.895 0.00 0.00 0.00 5.14
615 640 2.469516 CGAAAATCCCTTCGGCCCG 61.470 63.158 0.00 0.00 43.51 6.13
616 641 3.509659 CGAAAATCCCTTCGGCCC 58.490 61.111 0.00 0.00 43.51 5.80
658 683 2.961526 ATCTAACGCTCACGGAATGT 57.038 45.000 0.00 0.00 46.04 2.71
659 684 3.186909 TGAATCTAACGCTCACGGAATG 58.813 45.455 0.00 0.00 46.04 2.67
660 685 3.520290 TGAATCTAACGCTCACGGAAT 57.480 42.857 0.00 0.00 46.04 3.01
661 686 3.250744 CTTGAATCTAACGCTCACGGAA 58.749 45.455 0.00 0.00 46.04 4.30
662 687 2.876091 CTTGAATCTAACGCTCACGGA 58.124 47.619 0.00 0.00 46.04 4.69
663 688 1.324736 GCTTGAATCTAACGCTCACGG 59.675 52.381 0.00 0.00 46.04 4.94
664 689 6.775713 GATTTAGCTTGAATCTAACGCTCACG 60.776 42.308 12.70 0.00 36.67 4.35
665 690 5.779806 TTTAGCTTGAATCTAACGCTCAC 57.220 39.130 0.00 0.00 32.49 3.51
666 691 6.106003 TGATTTAGCTTGAATCTAACGCTCA 58.894 36.000 17.97 1.20 35.15 4.26
667 692 6.589830 TGATTTAGCTTGAATCTAACGCTC 57.410 37.500 17.97 0.00 35.15 5.03
668 693 6.455646 CGTTGATTTAGCTTGAATCTAACGCT 60.456 38.462 24.88 0.00 38.90 5.07
669 694 5.672856 CGTTGATTTAGCTTGAATCTAACGC 59.327 40.000 24.88 11.09 38.90 4.84
670 695 6.185399 CCGTTGATTTAGCTTGAATCTAACG 58.815 40.000 26.61 26.61 41.29 3.18
671 696 5.965918 GCCGTTGATTTAGCTTGAATCTAAC 59.034 40.000 17.97 17.25 35.15 2.34
672 697 5.065988 GGCCGTTGATTTAGCTTGAATCTAA 59.934 40.000 17.97 10.93 35.15 2.10
673 698 4.574828 GGCCGTTGATTTAGCTTGAATCTA 59.425 41.667 17.97 11.19 35.15 1.98
674 699 3.378427 GGCCGTTGATTTAGCTTGAATCT 59.622 43.478 17.97 0.00 35.15 2.40
675 700 3.128589 TGGCCGTTGATTTAGCTTGAATC 59.871 43.478 12.96 12.96 34.78 2.52
676 701 3.088532 TGGCCGTTGATTTAGCTTGAAT 58.911 40.909 0.00 0.00 0.00 2.57
677 702 2.509569 TGGCCGTTGATTTAGCTTGAA 58.490 42.857 0.00 0.00 0.00 2.69
678 703 2.192664 TGGCCGTTGATTTAGCTTGA 57.807 45.000 0.00 0.00 0.00 3.02
679 704 3.119531 TCAATGGCCGTTGATTTAGCTTG 60.120 43.478 32.20 7.90 33.41 4.01
680 705 3.088532 TCAATGGCCGTTGATTTAGCTT 58.911 40.909 32.20 0.00 33.41 3.74
681 706 2.423538 GTCAATGGCCGTTGATTTAGCT 59.576 45.455 36.50 0.00 39.99 3.32
682 707 2.423538 AGTCAATGGCCGTTGATTTAGC 59.576 45.455 36.50 25.05 39.99 3.09
683 708 3.181497 CCAGTCAATGGCCGTTGATTTAG 60.181 47.826 36.50 25.76 43.83 1.85
684 709 2.752354 CCAGTCAATGGCCGTTGATTTA 59.248 45.455 36.50 16.95 43.83 1.40
685 710 1.545582 CCAGTCAATGGCCGTTGATTT 59.454 47.619 36.50 26.31 43.83 2.17
686 711 1.176527 CCAGTCAATGGCCGTTGATT 58.823 50.000 36.50 31.06 43.83 2.57
687 712 2.872408 CCAGTCAATGGCCGTTGAT 58.128 52.632 36.50 24.19 43.83 2.57
688 713 4.395519 CCAGTCAATGGCCGTTGA 57.604 55.556 32.20 32.20 43.83 3.18
696 721 1.364626 GAGCGCCAGACCAGTCAATG 61.365 60.000 2.29 0.00 0.00 2.82
697 722 1.078848 GAGCGCCAGACCAGTCAAT 60.079 57.895 2.29 0.00 0.00 2.57
698 723 2.343758 GAGCGCCAGACCAGTCAA 59.656 61.111 2.29 0.00 0.00 3.18
699 724 4.056125 CGAGCGCCAGACCAGTCA 62.056 66.667 2.29 0.00 0.00 3.41
700 725 3.973267 GACGAGCGCCAGACCAGTC 62.973 68.421 2.29 0.00 0.00 3.51
701 726 4.057428 GACGAGCGCCAGACCAGT 62.057 66.667 2.29 0.00 0.00 4.00
702 727 3.691744 GAGACGAGCGCCAGACCAG 62.692 68.421 2.29 0.00 0.00 4.00
703 728 3.749064 GAGACGAGCGCCAGACCA 61.749 66.667 2.29 0.00 0.00 4.02
704 729 4.500116 GGAGACGAGCGCCAGACC 62.500 72.222 2.29 0.00 36.33 3.85
705 730 2.113433 TAGGAGACGAGCGCCAGAC 61.113 63.158 2.29 0.00 39.21 3.51
706 731 2.113433 GTAGGAGACGAGCGCCAGA 61.113 63.158 2.29 0.00 39.21 3.86
707 732 2.409651 GTAGGAGACGAGCGCCAG 59.590 66.667 2.29 0.00 39.21 4.85
708 733 3.138798 GGTAGGAGACGAGCGCCA 61.139 66.667 2.29 0.00 39.21 5.69
709 734 3.127352 CTGGTAGGAGACGAGCGCC 62.127 68.421 2.29 0.00 36.12 6.53
710 735 2.113433 TCTGGTAGGAGACGAGCGC 61.113 63.158 0.00 0.00 36.12 5.92
711 736 0.745128 AGTCTGGTAGGAGACGAGCG 60.745 60.000 0.00 0.00 46.04 5.03
712 737 1.941975 GTAGTCTGGTAGGAGACGAGC 59.058 57.143 0.00 0.00 46.04 5.03
713 738 3.118702 TCTGTAGTCTGGTAGGAGACGAG 60.119 52.174 0.00 0.00 46.04 4.18
714 739 2.836372 TCTGTAGTCTGGTAGGAGACGA 59.164 50.000 0.00 0.00 46.04 4.20
715 740 3.263489 TCTGTAGTCTGGTAGGAGACG 57.737 52.381 0.00 0.00 46.04 4.18
716 741 5.072058 TCCTATCTGTAGTCTGGTAGGAGAC 59.928 48.000 9.12 0.00 44.68 3.36
717 742 5.225227 TCCTATCTGTAGTCTGGTAGGAGA 58.775 45.833 9.12 0.00 44.68 3.71
718 743 5.570205 TCCTATCTGTAGTCTGGTAGGAG 57.430 47.826 9.12 0.00 44.68 3.69
719 744 5.432390 ACTTCCTATCTGTAGTCTGGTAGGA 59.568 44.000 9.12 9.12 46.44 2.94
720 745 5.533154 CACTTCCTATCTGTAGTCTGGTAGG 59.467 48.000 5.47 5.47 43.38 3.18
721 746 6.123651 ACACTTCCTATCTGTAGTCTGGTAG 58.876 44.000 0.00 0.00 0.00 3.18
722 747 6.075949 ACACTTCCTATCTGTAGTCTGGTA 57.924 41.667 0.00 0.00 0.00 3.25
723 748 4.936802 ACACTTCCTATCTGTAGTCTGGT 58.063 43.478 0.00 0.00 0.00 4.00
724 749 5.923733 AACACTTCCTATCTGTAGTCTGG 57.076 43.478 0.00 0.00 0.00 3.86
725 750 6.334202 GGAAACACTTCCTATCTGTAGTCTG 58.666 44.000 0.00 0.00 46.80 3.51
726 751 6.532988 GGAAACACTTCCTATCTGTAGTCT 57.467 41.667 0.00 0.00 46.80 3.24
745 770 2.452600 AGCACTTGTTTCCTGGGAAA 57.547 45.000 10.38 10.38 41.22 3.13
746 771 2.091885 AGAAGCACTTGTTTCCTGGGAA 60.092 45.455 2.52 0.00 36.14 3.97
747 772 1.494721 AGAAGCACTTGTTTCCTGGGA 59.505 47.619 2.52 0.00 36.14 4.37
748 773 1.610522 CAGAAGCACTTGTTTCCTGGG 59.389 52.381 2.52 0.00 36.14 4.45
749 774 2.301346 ACAGAAGCACTTGTTTCCTGG 58.699 47.619 2.52 0.00 36.14 4.45
750 775 3.629398 AGAACAGAAGCACTTGTTTCCTG 59.371 43.478 2.52 0.00 36.14 3.86
751 776 3.629398 CAGAACAGAAGCACTTGTTTCCT 59.371 43.478 2.52 0.00 36.14 3.36
752 777 3.378427 ACAGAACAGAAGCACTTGTTTCC 59.622 43.478 2.52 0.00 36.14 3.13
819 845 2.961062 GGATGAATTGGGAGATTGGGTG 59.039 50.000 0.00 0.00 0.00 4.61
857 890 3.428746 TGTTTTTGTGGGTGACAATCG 57.571 42.857 0.00 0.00 44.23 3.34
917 960 0.375803 GCCGTGACCGCGATAAATTT 59.624 50.000 8.23 0.00 0.00 1.82
919 962 2.235016 CGCCGTGACCGCGATAAAT 61.235 57.895 12.75 0.00 36.28 1.40
921 964 3.813143 TCGCCGTGACCGCGATAA 61.813 61.111 16.36 0.00 37.57 1.75
950 993 1.964933 GGGATTCGGTAGGAAGGAGAG 59.035 57.143 0.00 0.00 38.24 3.20
951 994 1.412649 GGGGATTCGGTAGGAAGGAGA 60.413 57.143 0.00 0.00 38.24 3.71
967 1075 1.306997 GGACATGAGAGGGTGGGGA 60.307 63.158 0.00 0.00 0.00 4.81
988 1096 6.222718 ACATCAATATATAGAGAGGAGGGGGA 59.777 42.308 6.04 0.00 0.00 4.81
989 1097 6.448202 ACATCAATATATAGAGAGGAGGGGG 58.552 44.000 6.04 0.00 0.00 5.40
990 1098 6.553100 GGACATCAATATATAGAGAGGAGGGG 59.447 46.154 6.04 0.00 0.00 4.79
991 1099 6.264292 CGGACATCAATATATAGAGAGGAGGG 59.736 46.154 6.04 0.00 0.00 4.30
992 1100 6.238897 GCGGACATCAATATATAGAGAGGAGG 60.239 46.154 6.04 0.00 0.00 4.30
993 1101 6.512578 CGCGGACATCAATATATAGAGAGGAG 60.513 46.154 0.00 0.57 0.00 3.69
1091 1219 2.347490 GCAGCCGAGGAAGAACCA 59.653 61.111 0.00 0.00 42.04 3.67
1092 1220 2.436824 GGCAGCCGAGGAAGAACC 60.437 66.667 0.00 0.00 39.35 3.62
1149 1278 2.223112 CCATGTCTTCCTTGAATTCGCG 60.223 50.000 0.00 0.00 0.00 5.87
1205 1336 2.342279 CCGACGTTGAGGCCAAGA 59.658 61.111 5.01 0.00 32.06 3.02
1336 1467 4.052229 CGTTCTCCTCGCCCACGT 62.052 66.667 0.00 0.00 41.18 4.49
1353 1484 2.187946 CATGTCGGTGAGCCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
1385 1516 2.995574 AGGTCGGCGTACTTGGCT 60.996 61.111 6.85 0.00 0.00 4.75
1484 1615 4.286320 GTCGCCGAGGCCGATGAT 62.286 66.667 8.72 0.00 38.22 2.45
1613 1744 4.314440 GTGCACTCCGCCTGGTCA 62.314 66.667 10.32 0.00 41.33 4.02
1715 1846 2.360980 CTGAGGTCGGAGGGGTCT 59.639 66.667 0.00 0.00 0.00 3.85
1787 1918 5.109210 ACTTTCGTTGCTATCGATGATCAA 58.891 37.500 8.54 6.45 37.18 2.57
1799 1935 1.268539 CGGCAAGAAACTTTCGTTGCT 60.269 47.619 23.34 6.05 40.89 3.91
1922 2073 2.138179 CCGGAAATAGGCCCTCGGA 61.138 63.158 0.00 0.00 39.83 4.55
1964 2115 1.597742 GCTGCACCTTCTTCTTCACA 58.402 50.000 0.00 0.00 0.00 3.58
2066 2217 4.785453 CCGCTCTTCCTGCCACCC 62.785 72.222 0.00 0.00 0.00 4.61
2144 2299 2.987547 TCCGCCGTCGAAGGTTCT 60.988 61.111 18.88 0.00 38.10 3.01
2170 2328 1.762957 CCACCAGGTTCATCCTATCGT 59.237 52.381 0.00 0.00 46.24 3.73
2179 2337 0.325933 CATCTGCTCCACCAGGTTCA 59.674 55.000 0.00 0.00 35.89 3.18
2256 2553 1.613630 AGGCAACAGGGATCCGACT 60.614 57.895 5.45 0.00 41.41 4.18
2309 2611 9.311916 CACAACTATCTTGAAAAATGTTTTCCA 57.688 29.630 10.17 0.23 0.00 3.53
2351 5638 4.148825 CTGAGGCTCGAACCCGGG 62.149 72.222 22.25 22.25 39.81 5.73
2382 5688 0.744414 TAGCAGAAACTCCGCATGCC 60.744 55.000 13.15 0.00 37.61 4.40
2384 5690 5.484173 TTTTATAGCAGAAACTCCGCATG 57.516 39.130 0.00 0.00 0.00 4.06
2406 5712 4.145365 GGTTAACCCTTGTTGGCTTTTT 57.855 40.909 14.16 0.00 35.87 1.94
2407 5713 3.830744 GGTTAACCCTTGTTGGCTTTT 57.169 42.857 14.16 0.00 35.87 2.27
2420 5726 1.203013 AGGCCAACTCAAGGGTTAACC 60.203 52.381 16.85 16.85 40.67 2.85
2422 5728 2.579410 GAGGCCAACTCAAGGGTTAA 57.421 50.000 5.01 0.00 45.85 2.01
2459 5857 0.673644 GTGCAAGTCATACACCGGCT 60.674 55.000 0.00 0.00 0.00 5.52
2737 6135 1.021920 CAGAGGAGCTCGTCGAGTCA 61.022 60.000 26.05 0.00 35.36 3.41
2804 6202 2.792196 CGTCATGGATGAATGCAAACGG 60.792 50.000 12.27 0.09 38.75 4.44
2840 6456 2.806244 GTTTACGTGTGGATGAACTGCT 59.194 45.455 0.00 0.00 0.00 4.24
2851 6467 2.933906 ACAGTTCACCAGTTTACGTGTG 59.066 45.455 0.00 0.00 0.00 3.82
2855 6471 4.609691 ACAAACAGTTCACCAGTTTACG 57.390 40.909 0.00 0.00 34.03 3.18
2902 6518 8.084073 TGTCTAATTTTGCAGGAGAAAATTCAG 58.916 33.333 8.85 6.53 40.50 3.02
2913 6529 9.868277 TTACCATAAATTGTCTAATTTTGCAGG 57.132 29.630 3.66 4.40 42.33 4.85
3044 6662 7.699391 CCCATGATTTATCATCGCACATAATTC 59.301 37.037 2.27 0.00 45.23 2.17
3135 6755 9.515226 AAGGACTTAACATTTTAAGCTATGTCA 57.485 29.630 10.61 0.00 45.74 3.58
3136 6756 9.989869 GAAGGACTTAACATTTTAAGCTATGTC 57.010 33.333 10.61 2.73 45.74 3.06
3250 7457 5.766670 TGCCAATTTGTTTTGCATTTCCATA 59.233 32.000 0.00 0.00 0.00 2.74
3254 7461 6.666417 TGTATGCCAATTTGTTTTGCATTTC 58.334 32.000 13.59 9.50 30.99 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.