Multiple sequence alignment - TraesCS7D01G497300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G497300 chr7D 100.000 3373 0 0 1 3373 603846727 603850099 0.000000e+00 6229.0
1 TraesCS7D01G497300 chr7D 90.616 1364 89 16 979 2304 604475133 604476495 0.000000e+00 1773.0
2 TraesCS7D01G497300 chr7D 89.596 1163 100 13 1148 2292 604531042 604532201 0.000000e+00 1458.0
3 TraesCS7D01G497300 chr7D 84.141 1507 139 53 792 2254 603982189 603983639 0.000000e+00 1367.0
4 TraesCS7D01G497300 chr7D 84.597 422 57 6 2955 3370 603864572 603864991 2.420000e-111 412.0
5 TraesCS7D01G497300 chr7D 86.580 231 28 3 2962 3189 604479213 604479443 5.590000e-63 252.0
6 TraesCS7D01G497300 chr7D 80.826 339 38 17 792 1111 604530710 604531040 1.210000e-59 241.0
7 TraesCS7D01G497300 chr7D 75.524 429 89 14 5 424 11414429 11414008 2.660000e-46 196.0
8 TraesCS7D01G497300 chr7D 75.467 428 90 13 5 423 461201938 461201517 9.550000e-46 195.0
9 TraesCS7D01G497300 chr7D 97.826 46 1 0 702 747 231562774 231562729 2.790000e-11 80.5
10 TraesCS7D01G497300 chr7D 97.826 46 1 0 702 747 606916155 606916200 2.790000e-11 80.5
11 TraesCS7D01G497300 chr7D 80.583 103 10 6 2652 2746 592823058 592822958 1.680000e-08 71.3
12 TraesCS7D01G497300 chr7B 91.024 1582 89 15 748 2292 686849631 686851196 0.000000e+00 2085.0
13 TraesCS7D01G497300 chr7B 93.723 1147 72 0 1146 2292 688163055 688164201 0.000000e+00 1720.0
14 TraesCS7D01G497300 chr7B 93.333 1155 68 8 1146 2292 686966478 686965325 0.000000e+00 1698.0
15 TraesCS7D01G497300 chr7B 84.013 1520 151 47 792 2254 686888831 686887347 0.000000e+00 1376.0
16 TraesCS7D01G497300 chr7B 82.482 548 80 9 1 541 686848974 686849512 1.830000e-127 466.0
17 TraesCS7D01G497300 chr7B 79.524 420 74 9 2962 3373 686953332 686952917 4.260000e-74 289.0
18 TraesCS7D01G497300 chr7B 87.864 206 15 6 753 954 686966769 686966570 2.020000e-57 233.0
19 TraesCS7D01G497300 chr7B 93.000 100 7 0 1015 1114 686966574 686966475 2.710000e-31 147.0
20 TraesCS7D01G497300 chr7B 98.387 62 1 0 1053 1114 688162997 688163058 3.560000e-20 110.0
21 TraesCS7D01G497300 chr7B 92.982 57 4 0 2888 2944 686962749 686962693 2.160000e-12 84.2
22 TraesCS7D01G497300 chr7A 92.807 1279 77 7 1012 2280 696552504 696553777 0.000000e+00 1838.0
23 TraesCS7D01G497300 chr7A 92.481 1157 75 4 1148 2292 696723495 696722339 0.000000e+00 1644.0
24 TraesCS7D01G497300 chr7A 86.661 1132 106 29 1145 2254 696623502 696622394 0.000000e+00 1212.0
25 TraesCS7D01G497300 chr7A 82.000 400 60 8 2955 3345 696720356 696719960 2.510000e-86 329.0
26 TraesCS7D01G497300 chr7A 82.067 329 36 11 807 1112 696623829 696623501 3.340000e-65 259.0
27 TraesCS7D01G497300 chr7A 79.896 383 28 21 748 1114 696723843 696723494 5.630000e-58 235.0
28 TraesCS7D01G497300 chr7A 89.444 180 15 2 748 923 696552304 696552483 1.220000e-54 224.0
29 TraesCS7D01G497300 chr7A 74.424 434 92 15 2 423 30868873 30869299 5.790000e-38 169.0
30 TraesCS7D01G497300 chr7A 85.430 151 18 4 2601 2749 207905929 207905781 1.620000e-33 154.0
31 TraesCS7D01G497300 chr2D 77.179 390 68 14 2962 3348 218305339 218304968 1.230000e-49 207.0
32 TraesCS7D01G497300 chr2D 97.826 46 1 0 702 747 359630182 359630227 2.790000e-11 80.5
33 TraesCS7D01G497300 chr6D 76.441 399 80 13 33 423 291218585 291218193 1.590000e-48 204.0
34 TraesCS7D01G497300 chr6D 73.148 432 101 12 1 425 5560463 5560040 1.260000e-29 141.0
35 TraesCS7D01G497300 chr6D 98.529 68 1 0 638 705 145357274 145357341 1.640000e-23 121.0
36 TraesCS7D01G497300 chr6A 75.255 392 81 14 52 432 602783829 602783443 4.470000e-39 172.0
37 TraesCS7D01G497300 chr5D 76.923 273 55 6 155 425 42067682 42067948 7.540000e-32 148.0
38 TraesCS7D01G497300 chr5D 98.529 68 1 0 638 705 512409414 512409481 1.640000e-23 121.0
39 TraesCS7D01G497300 chr5D 98.529 68 1 0 638 705 512416351 512416418 1.640000e-23 121.0
40 TraesCS7D01G497300 chr5B 74.155 414 82 19 24 424 72078117 72077716 7.540000e-32 148.0
41 TraesCS7D01G497300 chr4D 100.000 68 0 0 638 705 207068488 207068421 3.530000e-25 126.0
42 TraesCS7D01G497300 chr1D 100.000 68 0 0 638 705 254434771 254434838 3.530000e-25 126.0
43 TraesCS7D01G497300 chr1D 98.529 68 1 0 638 705 68411225 68411292 1.640000e-23 121.0
44 TraesCS7D01G497300 chr1D 97.826 46 1 0 702 747 254481690 254481645 2.790000e-11 80.5
45 TraesCS7D01G497300 chr1D 97.826 46 1 0 702 747 446738046 446738001 2.790000e-11 80.5
46 TraesCS7D01G497300 chrUn 98.529 68 1 0 638 705 39512728 39512795 1.640000e-23 121.0
47 TraesCS7D01G497300 chrUn 95.652 46 2 0 702 747 65424059 65424014 1.300000e-09 75.0
48 TraesCS7D01G497300 chr4B 98.529 68 1 0 638 705 308680031 308679964 1.640000e-23 121.0
49 TraesCS7D01G497300 chr1A 98.529 68 1 0 638 705 554462801 554462868 1.640000e-23 121.0
50 TraesCS7D01G497300 chr3A 76.056 213 35 9 2551 2750 374670456 374670665 2.770000e-16 97.1
51 TraesCS7D01G497300 chr4A 97.826 46 1 0 702 747 309271320 309271365 2.790000e-11 80.5
52 TraesCS7D01G497300 chr2A 97.826 46 1 0 702 747 588080704 588080749 2.790000e-11 80.5
53 TraesCS7D01G497300 chr3B 79.200 125 16 5 2647 2763 60774070 60773948 1.000000e-10 78.7
54 TraesCS7D01G497300 chr3B 78.400 125 17 6 2647 2763 60837966 60837844 4.670000e-09 73.1
55 TraesCS7D01G497300 chr3D 97.727 44 1 0 704 747 396621532 396621575 3.610000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G497300 chr7D 603846727 603850099 3372 False 6229.00 6229 100.000000 1 3373 1 chr7D.!!$F1 3372
1 TraesCS7D01G497300 chr7D 603982189 603983639 1450 False 1367.00 1367 84.141000 792 2254 1 chr7D.!!$F3 1462
2 TraesCS7D01G497300 chr7D 604475133 604479443 4310 False 1012.50 1773 88.598000 979 3189 2 chr7D.!!$F5 2210
3 TraesCS7D01G497300 chr7D 604530710 604532201 1491 False 849.50 1458 85.211000 792 2292 2 chr7D.!!$F6 1500
4 TraesCS7D01G497300 chr7B 686887347 686888831 1484 True 1376.00 1376 84.013000 792 2254 1 chr7B.!!$R1 1462
5 TraesCS7D01G497300 chr7B 686848974 686851196 2222 False 1275.50 2085 86.753000 1 2292 2 chr7B.!!$F1 2291
6 TraesCS7D01G497300 chr7B 688162997 688164201 1204 False 915.00 1720 96.055000 1053 2292 2 chr7B.!!$F2 1239
7 TraesCS7D01G497300 chr7B 686962693 686966769 4076 True 540.55 1698 91.794750 753 2944 4 chr7B.!!$R3 2191
8 TraesCS7D01G497300 chr7A 696552304 696553777 1473 False 1031.00 1838 91.125500 748 2280 2 chr7A.!!$F2 1532
9 TraesCS7D01G497300 chr7A 696719960 696723843 3883 True 736.00 1644 84.792333 748 3345 3 chr7A.!!$R3 2597
10 TraesCS7D01G497300 chr7A 696622394 696623829 1435 True 735.50 1212 84.364000 807 2254 2 chr7A.!!$R2 1447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.033504 TCGTCAAGGCCAAGTCAGTC 59.966 55.0 5.01 0.0 0.00 3.51 F
1141 1224 0.039074 CGCCTGTGTCCCGATAGATC 60.039 60.0 0.00 0.0 39.76 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 2024 0.911769 CCATCCTTCACCACCTGCTA 59.088 55.0 0.0 0.0 0.00 3.49 R
2373 3082 0.101399 AACTCTCGGCTACGCATCTG 59.899 55.0 0.0 0.0 40.69 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.161024 GCGTTTCGTCTTTGAGTCGG 59.839 55.000 0.00 0.00 0.00 4.79
54 55 0.191064 TTCCGGGCTATGATCCTCCT 59.809 55.000 0.00 0.00 0.00 3.69
56 57 0.252012 CCGGGCTATGATCCTCCTCT 60.252 60.000 0.00 0.00 0.00 3.69
64 65 4.155280 GCTATGATCCTCCTCTAGTTCGTC 59.845 50.000 0.00 0.00 0.00 4.20
66 67 5.570205 ATGATCCTCCTCTAGTTCGTCTA 57.430 43.478 0.00 0.00 0.00 2.59
86 87 3.220447 TGGGACAAATTCGACGGAC 57.780 52.632 0.00 0.00 31.92 4.79
92 93 1.269936 ACAAATTCGACGGACCTTCGT 60.270 47.619 18.74 0.00 46.83 3.85
103 104 2.022934 GGACCTTCGTCGTAGATTCCT 58.977 52.381 0.00 0.00 40.67 3.36
110 111 1.534163 CGTCGTAGATTCCTATCGGCA 59.466 52.381 0.00 0.00 40.67 5.69
111 112 2.031420 CGTCGTAGATTCCTATCGGCAA 60.031 50.000 0.00 0.00 40.67 4.52
119 120 2.170012 TCCTATCGGCAACTAGGGTT 57.830 50.000 0.00 0.00 36.06 4.11
140 141 0.323629 CAAGGTTAGGGTTCTCGGCA 59.676 55.000 0.00 0.00 0.00 5.69
158 159 1.137287 GCAACGCGTCGACAAAATTTG 60.137 47.619 14.44 11.38 0.00 2.32
160 161 0.658897 ACGCGTCGACAAAATTTGGT 59.341 45.000 17.16 0.00 34.12 3.67
163 164 2.456010 GCGTCGACAAAATTTGGTGTT 58.544 42.857 17.16 0.00 34.12 3.32
166 167 4.215965 CGTCGACAAAATTTGGTGTTAGG 58.784 43.478 17.16 0.00 34.12 2.69
186 187 7.277981 TGTTAGGTTCTTTAGATCGATTCAAGC 59.722 37.037 0.00 0.00 0.00 4.01
187 188 5.734720 AGGTTCTTTAGATCGATTCAAGCA 58.265 37.500 0.00 0.00 0.00 3.91
194 195 6.983474 TTAGATCGATTCAAGCATTCAACA 57.017 33.333 0.00 0.00 0.00 3.33
195 196 5.885230 AGATCGATTCAAGCATTCAACAA 57.115 34.783 0.00 0.00 0.00 2.83
197 198 3.809234 TCGATTCAAGCATTCAACAACG 58.191 40.909 0.00 0.00 0.00 4.10
217 218 0.325296 AGGATAACGACTCCAGGGCA 60.325 55.000 0.00 0.00 35.08 5.36
218 219 0.179081 GGATAACGACTCCAGGGCAC 60.179 60.000 0.00 0.00 32.72 5.01
230 231 3.827634 GGGCACCGATGGTCATTC 58.172 61.111 0.00 0.00 40.86 2.67
231 232 1.077787 GGGCACCGATGGTCATTCA 60.078 57.895 0.00 0.00 40.86 2.57
232 233 1.376609 GGGCACCGATGGTCATTCAC 61.377 60.000 0.00 0.00 40.86 3.18
233 234 0.676466 GGCACCGATGGTCATTCACA 60.676 55.000 0.00 0.00 31.02 3.58
234 235 0.447801 GCACCGATGGTCATTCACAC 59.552 55.000 0.00 0.00 31.02 3.82
253 254 1.459592 ACGCACGTGCATTAAGACTTC 59.540 47.619 37.03 6.34 42.21 3.01
256 257 2.159653 GCACGTGCATTAAGACTTCCTG 60.160 50.000 34.52 0.00 41.59 3.86
267 268 2.461695 AGACTTCCTGGATGTCATCGT 58.538 47.619 32.08 16.83 38.60 3.73
268 269 2.428890 AGACTTCCTGGATGTCATCGTC 59.571 50.000 32.08 14.22 38.60 4.20
273 274 1.293924 CTGGATGTCATCGTCAAGGC 58.706 55.000 6.74 0.00 29.41 4.35
280 281 0.684535 TCATCGTCAAGGCCAAGTCA 59.315 50.000 5.01 0.00 0.00 3.41
282 283 0.687354 ATCGTCAAGGCCAAGTCAGT 59.313 50.000 5.01 0.00 0.00 3.41
283 284 0.033504 TCGTCAAGGCCAAGTCAGTC 59.966 55.000 5.01 0.00 0.00 3.51
286 287 1.059584 TCAAGGCCAAGTCAGTCCCA 61.060 55.000 5.01 0.00 0.00 4.37
325 326 2.362800 GCGTGTCGACGGTCAGTTC 61.363 63.158 11.62 0.00 46.20 3.01
337 338 3.114616 CAGTTCTGACGGCGGCAG 61.115 66.667 36.09 36.09 34.71 4.85
360 361 2.126031 GCTCGTCGGTCCAGGAAC 60.126 66.667 0.00 0.00 0.00 3.62
372 373 4.600062 GGTCCAGGAACCTTGATGTAATT 58.400 43.478 0.00 0.00 36.32 1.40
403 404 9.616156 TTATGTTTGAGGTGTTTTGTACTTCTA 57.384 29.630 0.00 0.00 0.00 2.10
406 407 8.617809 TGTTTGAGGTGTTTTGTACTTCTATTC 58.382 33.333 0.00 0.00 0.00 1.75
407 408 8.617809 GTTTGAGGTGTTTTGTACTTCTATTCA 58.382 33.333 0.00 0.00 0.00 2.57
409 410 8.918202 TGAGGTGTTTTGTACTTCTATTCAAT 57.082 30.769 0.00 0.00 0.00 2.57
469 470 5.630061 TGCATATTGAAAACATCACGACTG 58.370 37.500 0.00 0.00 37.92 3.51
497 499 4.479786 AAAAAGCCAGCAAAAAGGTACA 57.520 36.364 0.00 0.00 0.00 2.90
498 500 3.452755 AAAGCCAGCAAAAAGGTACAC 57.547 42.857 0.00 0.00 0.00 2.90
504 512 4.440112 GCCAGCAAAAAGGTACACATATCC 60.440 45.833 0.00 0.00 0.00 2.59
513 521 6.834168 AAGGTACACATATCCCTTTTTGTG 57.166 37.500 0.00 0.00 43.88 3.33
515 523 5.944007 AGGTACACATATCCCTTTTTGTGAC 59.056 40.000 8.73 3.37 41.50 3.67
534 542 7.429636 TGTGACTATTAAAGAAAAACCGAGG 57.570 36.000 0.00 0.00 0.00 4.63
535 543 6.428771 TGTGACTATTAAAGAAAAACCGAGGG 59.571 38.462 0.00 0.00 0.00 4.30
536 544 6.652062 GTGACTATTAAAGAAAAACCGAGGGA 59.348 38.462 0.00 0.00 0.00 4.20
543 577 0.105913 AAAAACCGAGGGAGGCCAAA 60.106 50.000 5.01 0.00 33.69 3.28
558 592 5.226194 AGGCCAAAATGTAAGCATGAAAA 57.774 34.783 5.01 0.00 35.15 2.29
559 593 5.807909 AGGCCAAAATGTAAGCATGAAAAT 58.192 33.333 5.01 0.00 35.15 1.82
560 594 5.876460 AGGCCAAAATGTAAGCATGAAAATC 59.124 36.000 5.01 0.00 35.15 2.17
561 595 5.642919 GGCCAAAATGTAAGCATGAAAATCA 59.357 36.000 0.00 0.00 35.15 2.57
562 596 6.316890 GGCCAAAATGTAAGCATGAAAATCAT 59.683 34.615 0.00 0.00 37.65 2.45
563 597 7.148205 GGCCAAAATGTAAGCATGAAAATCATT 60.148 33.333 0.00 0.00 34.28 2.57
564 598 8.238631 GCCAAAATGTAAGCATGAAAATCATTT 58.761 29.630 0.00 3.96 34.28 2.32
565 599 9.763465 CCAAAATGTAAGCATGAAAATCATTTC 57.237 29.630 0.00 0.00 44.27 2.17
571 605 9.844790 TGTAAGCATGAAAATCATTTCTAGTTG 57.155 29.630 0.00 0.00 44.32 3.16
572 606 9.846248 GTAAGCATGAAAATCATTTCTAGTTGT 57.154 29.630 0.00 0.00 44.32 3.32
574 608 8.752766 AGCATGAAAATCATTTCTAGTTGTTG 57.247 30.769 0.00 0.00 44.32 3.33
575 609 7.816031 AGCATGAAAATCATTTCTAGTTGTTGG 59.184 33.333 0.00 0.00 44.32 3.77
599 633 1.225704 GATGGCTCCCCTTGACCAG 59.774 63.158 0.00 0.00 35.20 4.00
609 643 0.900647 CCTTGACCAGACGGAGACCT 60.901 60.000 0.00 0.00 35.59 3.85
619 653 2.966516 AGACGGAGACCTCAAAGAAAGT 59.033 45.455 0.00 0.00 0.00 2.66
636 672 0.980423 AGTGCTTCTCTTCTGTCCCC 59.020 55.000 0.00 0.00 0.00 4.81
637 673 0.390472 GTGCTTCTCTTCTGTCCCCG 60.390 60.000 0.00 0.00 0.00 5.73
638 674 1.219393 GCTTCTCTTCTGTCCCCGG 59.781 63.158 0.00 0.00 0.00 5.73
640 676 1.535444 TTCTCTTCTGTCCCCGGCA 60.535 57.895 0.00 0.00 0.00 5.69
641 677 0.909610 TTCTCTTCTGTCCCCGGCAT 60.910 55.000 0.00 0.00 0.00 4.40
642 678 1.153289 CTCTTCTGTCCCCGGCATG 60.153 63.158 0.00 0.00 0.00 4.06
643 679 1.903877 CTCTTCTGTCCCCGGCATGT 61.904 60.000 0.00 0.00 0.00 3.21
644 680 0.616395 TCTTCTGTCCCCGGCATGTA 60.616 55.000 0.00 0.00 0.00 2.29
645 681 0.469917 CTTCTGTCCCCGGCATGTAT 59.530 55.000 0.00 0.00 0.00 2.29
646 682 0.180171 TTCTGTCCCCGGCATGTATG 59.820 55.000 0.00 0.00 0.00 2.39
647 683 1.227943 CTGTCCCCGGCATGTATGG 60.228 63.158 0.00 0.00 0.00 2.74
648 684 1.983119 CTGTCCCCGGCATGTATGGT 61.983 60.000 0.00 0.00 0.00 3.55
649 685 1.226262 GTCCCCGGCATGTATGGTT 59.774 57.895 0.00 0.00 0.00 3.67
650 686 1.101049 GTCCCCGGCATGTATGGTTG 61.101 60.000 0.00 0.00 0.00 3.77
651 687 1.827789 CCCCGGCATGTATGGTTGG 60.828 63.158 0.00 0.00 0.00 3.77
652 688 1.827789 CCCGGCATGTATGGTTGGG 60.828 63.158 0.00 0.00 0.00 4.12
653 689 1.077068 CCGGCATGTATGGTTGGGT 60.077 57.895 0.00 0.00 0.00 4.51
654 690 0.682855 CCGGCATGTATGGTTGGGTT 60.683 55.000 0.00 0.00 0.00 4.11
655 691 1.181786 CGGCATGTATGGTTGGGTTT 58.818 50.000 0.00 0.00 0.00 3.27
656 692 1.548269 CGGCATGTATGGTTGGGTTTT 59.452 47.619 0.00 0.00 0.00 2.43
657 693 2.755655 CGGCATGTATGGTTGGGTTTTA 59.244 45.455 0.00 0.00 0.00 1.52
658 694 3.383185 CGGCATGTATGGTTGGGTTTTAT 59.617 43.478 0.00 0.00 0.00 1.40
659 695 4.142049 CGGCATGTATGGTTGGGTTTTATT 60.142 41.667 0.00 0.00 0.00 1.40
660 696 5.625656 CGGCATGTATGGTTGGGTTTTATTT 60.626 40.000 0.00 0.00 0.00 1.40
661 697 5.584251 GGCATGTATGGTTGGGTTTTATTTG 59.416 40.000 0.00 0.00 0.00 2.32
662 698 6.169800 GCATGTATGGTTGGGTTTTATTTGT 58.830 36.000 0.00 0.00 0.00 2.83
663 699 6.091986 GCATGTATGGTTGGGTTTTATTTGTG 59.908 38.462 0.00 0.00 0.00 3.33
664 700 6.732896 TGTATGGTTGGGTTTTATTTGTGT 57.267 33.333 0.00 0.00 0.00 3.72
665 701 7.834881 TGTATGGTTGGGTTTTATTTGTGTA 57.165 32.000 0.00 0.00 0.00 2.90
666 702 8.423906 TGTATGGTTGGGTTTTATTTGTGTAT 57.576 30.769 0.00 0.00 0.00 2.29
667 703 8.871125 TGTATGGTTGGGTTTTATTTGTGTATT 58.129 29.630 0.00 0.00 0.00 1.89
668 704 9.713713 GTATGGTTGGGTTTTATTTGTGTATTT 57.286 29.630 0.00 0.00 0.00 1.40
669 705 8.614469 ATGGTTGGGTTTTATTTGTGTATTTG 57.386 30.769 0.00 0.00 0.00 2.32
670 706 6.992715 TGGTTGGGTTTTATTTGTGTATTTGG 59.007 34.615 0.00 0.00 0.00 3.28
671 707 6.993308 GGTTGGGTTTTATTTGTGTATTTGGT 59.007 34.615 0.00 0.00 0.00 3.67
672 708 7.041712 GGTTGGGTTTTATTTGTGTATTTGGTG 60.042 37.037 0.00 0.00 0.00 4.17
673 709 6.525629 TGGGTTTTATTTGTGTATTTGGTGG 58.474 36.000 0.00 0.00 0.00 4.61
674 710 6.326583 TGGGTTTTATTTGTGTATTTGGTGGA 59.673 34.615 0.00 0.00 0.00 4.02
675 711 7.147549 TGGGTTTTATTTGTGTATTTGGTGGAA 60.148 33.333 0.00 0.00 0.00 3.53
676 712 7.880713 GGGTTTTATTTGTGTATTTGGTGGAAT 59.119 33.333 0.00 0.00 0.00 3.01
677 713 9.278978 GGTTTTATTTGTGTATTTGGTGGAATT 57.721 29.630 0.00 0.00 0.00 2.17
680 716 8.839310 TTATTTGTGTATTTGGTGGAATTTGG 57.161 30.769 0.00 0.00 0.00 3.28
681 717 4.264460 TGTGTATTTGGTGGAATTTGGC 57.736 40.909 0.00 0.00 0.00 4.52
682 718 3.643320 TGTGTATTTGGTGGAATTTGGCA 59.357 39.130 0.00 0.00 0.00 4.92
683 719 4.285517 TGTGTATTTGGTGGAATTTGGCAT 59.714 37.500 0.00 0.00 0.00 4.40
684 720 5.481824 TGTGTATTTGGTGGAATTTGGCATA 59.518 36.000 0.00 0.00 0.00 3.14
685 721 6.155910 TGTGTATTTGGTGGAATTTGGCATAT 59.844 34.615 0.00 0.00 0.00 1.78
686 722 7.047271 GTGTATTTGGTGGAATTTGGCATATT 58.953 34.615 2.68 2.68 0.00 1.28
687 723 7.552330 GTGTATTTGGTGGAATTTGGCATATTT 59.448 33.333 4.66 0.00 0.00 1.40
688 724 8.105829 TGTATTTGGTGGAATTTGGCATATTTT 58.894 29.630 4.66 0.00 0.00 1.82
689 725 9.606631 GTATTTGGTGGAATTTGGCATATTTTA 57.393 29.630 4.66 0.00 0.00 1.52
691 727 7.913674 TTGGTGGAATTTGGCATATTTTAAC 57.086 32.000 4.66 4.33 0.00 2.01
692 728 6.410540 TGGTGGAATTTGGCATATTTTAACC 58.589 36.000 16.29 16.29 0.00 2.85
693 729 6.013379 TGGTGGAATTTGGCATATTTTAACCA 60.013 34.615 19.31 19.31 0.00 3.67
694 730 6.881602 GGTGGAATTTGGCATATTTTAACCAA 59.118 34.615 17.34 0.00 40.34 3.67
699 735 6.441088 TTTGGCATATTTTAACCAAACCCT 57.559 33.333 2.06 0.00 44.92 4.34
700 736 6.441088 TTGGCATATTTTAACCAAACCCTT 57.559 33.333 0.00 0.00 39.17 3.95
701 737 6.043854 TGGCATATTTTAACCAAACCCTTC 57.956 37.500 0.00 0.00 0.00 3.46
702 738 5.106442 GGCATATTTTAACCAAACCCTTCG 58.894 41.667 0.00 0.00 0.00 3.79
703 739 4.565166 GCATATTTTAACCAAACCCTTCGC 59.435 41.667 0.00 0.00 0.00 4.70
704 740 5.715070 CATATTTTAACCAAACCCTTCGCA 58.285 37.500 0.00 0.00 0.00 5.10
705 741 4.674281 ATTTTAACCAAACCCTTCGCAA 57.326 36.364 0.00 0.00 0.00 4.85
706 742 3.439895 TTTAACCAAACCCTTCGCAAC 57.560 42.857 0.00 0.00 0.00 4.17
707 743 1.320507 TAACCAAACCCTTCGCAACC 58.679 50.000 0.00 0.00 0.00 3.77
708 744 1.396607 AACCAAACCCTTCGCAACCC 61.397 55.000 0.00 0.00 0.00 4.11
709 745 1.830408 CCAAACCCTTCGCAACCCA 60.830 57.895 0.00 0.00 0.00 4.51
710 746 1.395826 CCAAACCCTTCGCAACCCAA 61.396 55.000 0.00 0.00 0.00 4.12
711 747 0.461961 CAAACCCTTCGCAACCCAAA 59.538 50.000 0.00 0.00 0.00 3.28
712 748 1.069978 CAAACCCTTCGCAACCCAAAT 59.930 47.619 0.00 0.00 0.00 2.32
713 749 1.419381 AACCCTTCGCAACCCAAATT 58.581 45.000 0.00 0.00 0.00 1.82
714 750 2.296073 ACCCTTCGCAACCCAAATTA 57.704 45.000 0.00 0.00 0.00 1.40
715 751 2.599677 ACCCTTCGCAACCCAAATTAA 58.400 42.857 0.00 0.00 0.00 1.40
716 752 3.169908 ACCCTTCGCAACCCAAATTAAT 58.830 40.909 0.00 0.00 0.00 1.40
717 753 3.580895 ACCCTTCGCAACCCAAATTAATT 59.419 39.130 0.00 0.00 0.00 1.40
718 754 4.180817 CCCTTCGCAACCCAAATTAATTC 58.819 43.478 0.10 0.00 0.00 2.17
719 755 4.180817 CCTTCGCAACCCAAATTAATTCC 58.819 43.478 0.10 0.00 0.00 3.01
720 756 4.081697 CCTTCGCAACCCAAATTAATTCCT 60.082 41.667 0.10 0.00 0.00 3.36
721 757 5.126384 CCTTCGCAACCCAAATTAATTCCTA 59.874 40.000 0.10 0.00 0.00 2.94
722 758 6.350612 CCTTCGCAACCCAAATTAATTCCTAA 60.351 38.462 0.10 0.00 0.00 2.69
723 759 6.783708 TCGCAACCCAAATTAATTCCTAAT 57.216 33.333 0.10 0.00 0.00 1.73
724 760 6.801575 TCGCAACCCAAATTAATTCCTAATC 58.198 36.000 0.10 0.00 29.44 1.75
725 761 5.983118 CGCAACCCAAATTAATTCCTAATCC 59.017 40.000 0.10 0.00 29.44 3.01
726 762 6.183360 CGCAACCCAAATTAATTCCTAATCCT 60.183 38.462 0.10 0.00 29.44 3.24
727 763 7.564793 GCAACCCAAATTAATTCCTAATCCTT 58.435 34.615 0.10 0.00 29.44 3.36
728 764 8.700973 GCAACCCAAATTAATTCCTAATCCTTA 58.299 33.333 0.10 0.00 29.44 2.69
801 837 2.181975 CAACCCAAAGCCAATCCATCT 58.818 47.619 0.00 0.00 0.00 2.90
814 852 5.737860 CCAATCCATCTATGATCCATCGAA 58.262 41.667 0.00 0.00 0.00 3.71
838 884 2.118313 TCATGCTGATTGTCACCCAG 57.882 50.000 0.00 0.00 0.00 4.45
919 969 2.604174 CGGCGACCAAAAGAAGCGT 61.604 57.895 0.00 0.00 0.00 5.07
959 1016 1.140652 CCAAGATGCTTCCTCCTCCTC 59.859 57.143 0.00 0.00 0.00 3.71
963 1020 2.042843 GCTTCCTCCTCCTCCCGA 60.043 66.667 0.00 0.00 0.00 5.14
964 1021 2.428085 GCTTCCTCCTCCTCCCGAC 61.428 68.421 0.00 0.00 0.00 4.79
1028 1097 4.218852 CGTGTCCCCTCCTCTCTATAAATC 59.781 50.000 0.00 0.00 0.00 2.17
1090 1170 1.592669 CATGCCCGTCTAGCTTCCG 60.593 63.158 0.00 0.00 0.00 4.30
1141 1224 0.039074 CGCCTGTGTCCCGATAGATC 60.039 60.000 0.00 0.00 39.76 2.75
1313 1458 2.275318 CTCCAAGAAGAATCACGAGGC 58.725 52.381 0.00 0.00 0.00 4.70
1760 1922 1.202087 CGAACAACAAGCAAACGTCCA 60.202 47.619 0.00 0.00 0.00 4.02
1782 1944 2.359214 TCCATCTTCTTCCTCGTGATCG 59.641 50.000 0.00 0.00 38.55 3.69
1798 1964 1.225936 TCGTCGATCGCAACGAGAC 60.226 57.895 23.16 8.98 42.49 3.36
1801 1968 1.337821 GTCGATCGCAACGAGACTTT 58.662 50.000 11.09 0.00 39.91 2.66
1805 1975 2.096909 CGATCGCAACGAGACTTTTTGT 60.097 45.455 0.26 0.00 39.91 2.83
1842 2024 2.865551 CAATTTGCGCTTGGTTTTGACT 59.134 40.909 9.73 0.00 0.00 3.41
2265 2454 0.745845 CCGGATCCCTGTTGCTTGAG 60.746 60.000 6.06 0.00 0.00 3.02
2295 2929 1.484240 GCCAGCACAGGAGAATACTCT 59.516 52.381 0.00 0.00 42.28 3.24
2296 2930 2.695666 GCCAGCACAGGAGAATACTCTA 59.304 50.000 0.00 0.00 42.28 2.43
2307 2944 5.659079 AGGAGAATACTCTACTGGAAACCTG 59.341 44.000 0.00 0.00 41.76 4.00
2308 2945 5.346181 AGAATACTCTACTGGAAACCTGC 57.654 43.478 0.00 0.00 0.00 4.85
2309 2946 4.162509 AGAATACTCTACTGGAAACCTGCC 59.837 45.833 0.00 0.00 0.00 4.85
2310 2947 1.729586 ACTCTACTGGAAACCTGCCA 58.270 50.000 0.00 0.00 0.00 4.92
2311 2948 9.716994 GAGAATACTCTACTGGAAACCTGCCAG 62.717 48.148 8.03 8.03 46.31 4.85
2315 3024 2.187073 CTGGAAACCTGCCAGCATC 58.813 57.895 0.00 0.00 45.66 3.91
2316 3025 1.651240 CTGGAAACCTGCCAGCATCG 61.651 60.000 0.00 0.00 45.66 3.84
2322 3031 1.220206 CCTGCCAGCATCGAGTTCT 59.780 57.895 0.00 0.00 0.00 3.01
2324 3033 0.725686 CTGCCAGCATCGAGTTCTTG 59.274 55.000 0.00 0.00 0.00 3.02
2326 3035 0.723981 GCCAGCATCGAGTTCTTGTC 59.276 55.000 0.00 0.00 0.00 3.18
2327 3036 0.994995 CCAGCATCGAGTTCTTGTCG 59.005 55.000 0.00 0.00 38.84 4.35
2336 3045 2.599082 CGAGTTCTTGTCGATGTAAGCC 59.401 50.000 0.00 0.00 39.92 4.35
2338 3047 2.230508 AGTTCTTGTCGATGTAAGCCGA 59.769 45.455 0.00 0.00 0.00 5.54
2339 3048 2.561733 TCTTGTCGATGTAAGCCGAG 57.438 50.000 0.00 0.00 35.31 4.63
2340 3049 1.816835 TCTTGTCGATGTAAGCCGAGT 59.183 47.619 0.00 0.00 35.31 4.18
2342 3051 2.838386 TGTCGATGTAAGCCGAGTAC 57.162 50.000 0.00 0.00 35.31 2.73
2343 3052 2.086094 TGTCGATGTAAGCCGAGTACA 58.914 47.619 0.00 0.00 35.31 2.90
2344 3053 2.096980 TGTCGATGTAAGCCGAGTACAG 59.903 50.000 0.00 0.00 35.04 2.74
2345 3054 1.065102 TCGATGTAAGCCGAGTACAGC 59.935 52.381 0.00 0.00 35.04 4.40
2347 3056 2.733517 GATGTAAGCCGAGTACAGCTC 58.266 52.381 5.65 0.00 38.74 4.09
2349 3058 1.743958 TGTAAGCCGAGTACAGCTCTC 59.256 52.381 5.65 0.00 41.98 3.20
2361 3070 6.710597 AGTACAGCTCTCGGTAATTAATCA 57.289 37.500 0.00 0.00 0.00 2.57
2362 3071 6.740110 AGTACAGCTCTCGGTAATTAATCAG 58.260 40.000 0.00 0.00 0.00 2.90
2363 3072 4.372656 ACAGCTCTCGGTAATTAATCAGC 58.627 43.478 0.00 0.00 0.00 4.26
2364 3073 4.141937 ACAGCTCTCGGTAATTAATCAGCA 60.142 41.667 0.00 0.00 0.00 4.41
2366 3075 3.743396 GCTCTCGGTAATTAATCAGCAGG 59.257 47.826 0.00 0.00 0.00 4.85
2367 3076 4.501571 GCTCTCGGTAATTAATCAGCAGGA 60.502 45.833 0.00 0.00 0.00 3.86
2368 3077 4.945246 TCTCGGTAATTAATCAGCAGGAC 58.055 43.478 0.00 0.00 0.00 3.85
2371 3080 3.245284 CGGTAATTAATCAGCAGGACACG 59.755 47.826 0.00 0.00 0.00 4.49
2372 3081 4.439057 GGTAATTAATCAGCAGGACACGA 58.561 43.478 0.00 0.00 0.00 4.35
2373 3082 4.270325 GGTAATTAATCAGCAGGACACGAC 59.730 45.833 0.00 0.00 0.00 4.34
2374 3083 3.610040 ATTAATCAGCAGGACACGACA 57.390 42.857 0.00 0.00 0.00 4.35
2376 3085 0.969149 AATCAGCAGGACACGACAGA 59.031 50.000 0.00 0.00 0.00 3.41
2379 3088 1.079543 AGCAGGACACGACAGATGC 60.080 57.895 0.00 0.00 0.00 3.91
2380 3089 2.447887 GCAGGACACGACAGATGCG 61.448 63.158 0.00 0.00 0.00 4.73
2382 3091 0.170339 CAGGACACGACAGATGCGTA 59.830 55.000 0.00 0.00 40.44 4.42
2383 3092 0.452184 AGGACACGACAGATGCGTAG 59.548 55.000 0.00 0.00 40.44 3.51
2397 3106 3.253416 CGTAGCCGAGAGTTAAGCC 57.747 57.895 0.00 0.00 35.63 4.35
2398 3107 0.591741 CGTAGCCGAGAGTTAAGCCG 60.592 60.000 0.00 0.00 35.63 5.52
2399 3108 0.870735 GTAGCCGAGAGTTAAGCCGC 60.871 60.000 0.00 0.00 0.00 6.53
2401 3110 2.167861 GCCGAGAGTTAAGCCGCAG 61.168 63.158 0.00 0.00 0.00 5.18
2414 3309 2.856032 CGCAGGTGCTCGACAAAG 59.144 61.111 0.00 0.00 39.32 2.77
2416 3311 1.016130 CGCAGGTGCTCGACAAAGAT 61.016 55.000 0.00 0.00 39.32 2.40
2418 3313 1.941209 GCAGGTGCTCGACAAAGATCA 60.941 52.381 0.00 0.00 38.21 2.92
2440 3335 4.942761 AAAAACATGGCTTGACAGATGT 57.057 36.364 7.45 0.00 0.00 3.06
2441 3336 4.942761 AAAACATGGCTTGACAGATGTT 57.057 36.364 7.45 0.00 40.03 2.71
2442 3337 4.942761 AAACATGGCTTGACAGATGTTT 57.057 36.364 7.45 5.78 41.80 2.83
2443 3338 3.928727 ACATGGCTTGACAGATGTTTG 57.071 42.857 7.45 0.00 0.00 2.93
2444 3339 2.029649 ACATGGCTTGACAGATGTTTGC 60.030 45.455 7.45 0.00 0.00 3.68
2445 3340 0.961019 TGGCTTGACAGATGTTTGCC 59.039 50.000 13.99 13.99 37.95 4.52
2446 3341 0.109597 GGCTTGACAGATGTTTGCCG 60.110 55.000 8.35 0.00 32.02 5.69
2448 3343 1.135859 GCTTGACAGATGTTTGCCGAG 60.136 52.381 0.00 0.00 0.00 4.63
2449 3344 2.416747 CTTGACAGATGTTTGCCGAGA 58.583 47.619 0.00 0.00 0.00 4.04
2450 3345 2.084610 TGACAGATGTTTGCCGAGAG 57.915 50.000 0.00 0.00 0.00 3.20
2451 3346 0.723981 GACAGATGTTTGCCGAGAGC 59.276 55.000 0.00 0.00 44.14 4.09
2452 3347 0.322975 ACAGATGTTTGCCGAGAGCT 59.677 50.000 0.00 0.00 44.23 4.09
2453 3348 1.550524 ACAGATGTTTGCCGAGAGCTA 59.449 47.619 0.00 0.00 44.23 3.32
2454 3349 2.028112 ACAGATGTTTGCCGAGAGCTAA 60.028 45.455 0.00 0.00 44.23 3.09
2459 3354 2.024176 TTTGCCGAGAGCTAACATCC 57.976 50.000 0.00 0.00 44.23 3.51
2462 3357 0.461961 GCCGAGAGCTAACATCCAGT 59.538 55.000 0.00 0.00 38.99 4.00
2463 3358 1.134670 GCCGAGAGCTAACATCCAGTT 60.135 52.381 0.00 0.00 44.27 3.16
2465 3360 3.707793 CCGAGAGCTAACATCCAGTTAC 58.292 50.000 0.00 0.00 41.64 2.50
2467 3362 4.106197 CGAGAGCTAACATCCAGTTACAC 58.894 47.826 0.00 0.00 41.64 2.90
2468 3363 4.106197 GAGAGCTAACATCCAGTTACACG 58.894 47.826 0.00 0.00 41.64 4.49
2469 3364 3.119101 AGAGCTAACATCCAGTTACACGG 60.119 47.826 0.00 0.00 41.64 4.94
2470 3365 1.664151 GCTAACATCCAGTTACACGGC 59.336 52.381 0.00 0.00 41.64 5.68
2471 3366 2.933492 GCTAACATCCAGTTACACGGCA 60.933 50.000 0.00 0.00 41.64 5.69
2473 3368 2.489938 ACATCCAGTTACACGGCAAT 57.510 45.000 0.00 0.00 0.00 3.56
2474 3369 3.620427 ACATCCAGTTACACGGCAATA 57.380 42.857 0.00 0.00 0.00 1.90
2476 3371 2.684001 TCCAGTTACACGGCAATAGG 57.316 50.000 0.00 0.00 0.00 2.57
2477 3372 2.181125 TCCAGTTACACGGCAATAGGA 58.819 47.619 0.00 0.00 0.00 2.94
2478 3373 2.769663 TCCAGTTACACGGCAATAGGAT 59.230 45.455 0.00 0.00 0.00 3.24
2479 3374 2.872245 CCAGTTACACGGCAATAGGATG 59.128 50.000 0.00 0.00 0.00 3.51
2480 3375 3.531538 CAGTTACACGGCAATAGGATGT 58.468 45.455 0.00 0.00 0.00 3.06
2481 3376 3.309682 CAGTTACACGGCAATAGGATGTG 59.690 47.826 0.00 0.00 36.64 3.21
2482 3377 1.948104 TACACGGCAATAGGATGTGC 58.052 50.000 0.00 0.00 40.14 4.57
2483 3378 0.035534 ACACGGCAATAGGATGTGCA 60.036 50.000 0.00 0.00 42.74 4.57
2484 3379 0.378257 CACGGCAATAGGATGTGCAC 59.622 55.000 10.75 10.75 42.74 4.57
2485 3380 0.748005 ACGGCAATAGGATGTGCACC 60.748 55.000 15.69 0.00 42.74 5.01
2487 3382 1.027357 GGCAATAGGATGTGCACCAG 58.973 55.000 15.69 0.00 42.74 4.00
2488 3383 1.683011 GGCAATAGGATGTGCACCAGT 60.683 52.381 15.69 0.00 42.74 4.00
2489 3384 1.402968 GCAATAGGATGTGCACCAGTG 59.597 52.381 15.69 5.11 40.58 3.66
2491 3386 0.107017 ATAGGATGTGCACCAGTGGC 60.107 55.000 15.69 0.00 0.00 5.01
2492 3387 1.487850 TAGGATGTGCACCAGTGGCA 61.488 55.000 15.69 0.00 39.32 4.92
2497 3392 2.747022 TGCACCAGTGGCACGTAT 59.253 55.556 9.78 0.00 36.11 3.06
2500 3395 0.953471 GCACCAGTGGCACGTATGAA 60.953 55.000 9.78 0.00 0.00 2.57
2501 3396 1.737838 CACCAGTGGCACGTATGAAT 58.262 50.000 9.78 0.00 0.00 2.57
2502 3397 1.398041 CACCAGTGGCACGTATGAATG 59.602 52.381 9.78 2.78 0.00 2.67
2504 3399 2.092968 ACCAGTGGCACGTATGAATGAT 60.093 45.455 9.78 0.00 0.00 2.45
2505 3400 2.545526 CCAGTGGCACGTATGAATGATC 59.454 50.000 12.71 0.00 0.00 2.92
2506 3401 3.197265 CAGTGGCACGTATGAATGATCA 58.803 45.455 12.71 0.00 40.57 2.92
2508 3403 4.274214 CAGTGGCACGTATGAATGATCATT 59.726 41.667 20.85 20.85 43.89 2.57
2509 3404 4.512944 AGTGGCACGTATGAATGATCATTC 59.487 41.667 32.61 32.61 43.89 2.67
2523 3418 7.891498 AATGATCATTCAATCCAACATGAGA 57.109 32.000 15.36 0.00 34.96 3.27
2524 3419 7.891498 ATGATCATTCAATCCAACATGAGAA 57.109 32.000 1.18 0.00 34.96 2.87
2525 3420 7.891498 TGATCATTCAATCCAACATGAGAAT 57.109 32.000 0.00 0.00 0.00 2.40
2527 3422 8.194769 TGATCATTCAATCCAACATGAGAATTG 58.805 33.333 0.00 4.30 0.00 2.32
2528 3423 7.470935 TCATTCAATCCAACATGAGAATTGT 57.529 32.000 0.00 0.00 0.00 2.71
2538 3433 6.882610 AACATGAGAATTGTTGACAGCTAA 57.117 33.333 0.00 0.00 36.02 3.09
2539 3434 6.246420 ACATGAGAATTGTTGACAGCTAAC 57.754 37.500 0.00 0.00 0.00 2.34
2540 3435 5.764686 ACATGAGAATTGTTGACAGCTAACA 59.235 36.000 0.00 0.00 36.34 2.41
2541 3436 5.929697 TGAGAATTGTTGACAGCTAACAG 57.070 39.130 1.11 0.00 39.03 3.16
2543 3438 6.521162 TGAGAATTGTTGACAGCTAACAGTA 58.479 36.000 1.11 0.00 39.03 2.74
2544 3439 6.646653 TGAGAATTGTTGACAGCTAACAGTAG 59.353 38.462 1.11 0.00 39.03 2.57
2546 3441 6.992715 AGAATTGTTGACAGCTAACAGTAGTT 59.007 34.615 1.11 0.00 39.03 2.24
2547 3442 7.499232 AGAATTGTTGACAGCTAACAGTAGTTT 59.501 33.333 1.11 0.00 39.03 2.66
2560 3455 4.010349 ACAGTAGTTTGCTTATTGGGCTC 58.990 43.478 0.00 0.00 0.00 4.70
2561 3456 3.378427 CAGTAGTTTGCTTATTGGGCTCC 59.622 47.826 0.00 0.00 0.00 4.70
2563 3458 2.728007 AGTTTGCTTATTGGGCTCCTC 58.272 47.619 0.00 0.00 0.00 3.71
2566 3461 1.289160 TGCTTATTGGGCTCCTCAGT 58.711 50.000 0.00 0.00 0.00 3.41
2567 3462 1.065199 TGCTTATTGGGCTCCTCAGTG 60.065 52.381 0.00 0.00 0.00 3.66
2568 3463 1.065126 GCTTATTGGGCTCCTCAGTGT 60.065 52.381 0.00 0.00 0.00 3.55
2569 3464 2.170607 GCTTATTGGGCTCCTCAGTGTA 59.829 50.000 0.00 0.00 0.00 2.90
2570 3465 3.742640 GCTTATTGGGCTCCTCAGTGTAG 60.743 52.174 0.00 0.00 0.00 2.74
2572 3467 0.116342 TTGGGCTCCTCAGTGTAGGA 59.884 55.000 9.94 9.94 43.58 2.94
2573 3468 0.116342 TGGGCTCCTCAGTGTAGGAA 59.884 55.000 11.10 0.00 45.08 3.36
2574 3469 1.273838 TGGGCTCCTCAGTGTAGGAAT 60.274 52.381 11.10 0.00 45.08 3.01
2576 3471 2.239907 GGGCTCCTCAGTGTAGGAATTT 59.760 50.000 11.10 0.00 45.08 1.82
2577 3472 3.274288 GGCTCCTCAGTGTAGGAATTTG 58.726 50.000 11.10 3.37 45.08 2.32
2578 3473 3.307762 GGCTCCTCAGTGTAGGAATTTGT 60.308 47.826 11.10 0.00 45.08 2.83
2580 3475 5.112686 GCTCCTCAGTGTAGGAATTTGTAG 58.887 45.833 11.10 2.05 45.08 2.74
2581 3476 5.086104 TCCTCAGTGTAGGAATTTGTAGC 57.914 43.478 8.38 0.00 42.83 3.58
2582 3477 4.530553 TCCTCAGTGTAGGAATTTGTAGCA 59.469 41.667 8.38 0.00 42.83 3.49
2583 3478 5.012664 TCCTCAGTGTAGGAATTTGTAGCAA 59.987 40.000 8.38 0.00 42.83 3.91
2584 3479 5.352569 CCTCAGTGTAGGAATTTGTAGCAAG 59.647 44.000 3.29 0.00 39.15 4.01
2585 3480 4.695455 TCAGTGTAGGAATTTGTAGCAAGC 59.305 41.667 0.00 0.00 0.00 4.01
2586 3481 4.455533 CAGTGTAGGAATTTGTAGCAAGCA 59.544 41.667 0.00 0.00 0.00 3.91
2587 3482 4.455877 AGTGTAGGAATTTGTAGCAAGCAC 59.544 41.667 0.00 0.00 0.00 4.40
2591 3486 3.256631 AGGAATTTGTAGCAAGCACCAAG 59.743 43.478 0.00 0.00 0.00 3.61
2622 3517 5.830000 GTGATAAACCAAGGTACCAATCC 57.170 43.478 15.94 0.00 0.00 3.01
2623 3518 5.258051 GTGATAAACCAAGGTACCAATCCA 58.742 41.667 15.94 0.00 0.00 3.41
2624 3519 5.891551 GTGATAAACCAAGGTACCAATCCAT 59.108 40.000 15.94 0.00 0.00 3.41
2625 3520 5.890985 TGATAAACCAAGGTACCAATCCATG 59.109 40.000 15.94 3.01 0.00 3.66
2626 3521 4.396357 AAACCAAGGTACCAATCCATGA 57.604 40.909 15.94 0.00 0.00 3.07
2628 3523 3.968265 ACCAAGGTACCAATCCATGAAG 58.032 45.455 15.94 0.00 0.00 3.02
2629 3524 3.333680 ACCAAGGTACCAATCCATGAAGT 59.666 43.478 15.94 0.00 0.00 3.01
2631 3526 4.881850 CCAAGGTACCAATCCATGAAGTAC 59.118 45.833 15.94 0.00 34.01 2.73
2633 3528 3.463944 GGTACCAATCCATGAAGTACCG 58.536 50.000 7.15 0.00 42.44 4.02
2634 3529 2.710096 ACCAATCCATGAAGTACCGG 57.290 50.000 0.00 0.00 0.00 5.28
2635 3530 1.913419 ACCAATCCATGAAGTACCGGT 59.087 47.619 13.98 13.98 0.00 5.28
2639 3559 4.315803 CAATCCATGAAGTACCGGTATCC 58.684 47.826 19.19 5.79 0.00 2.59
2643 3563 6.143551 TCCATGAAGTACCGGTATCCTATA 57.856 41.667 19.19 4.40 0.00 1.31
2644 3564 6.554784 TCCATGAAGTACCGGTATCCTATAA 58.445 40.000 19.19 0.74 0.00 0.98
2645 3565 6.435277 TCCATGAAGTACCGGTATCCTATAAC 59.565 42.308 19.19 4.48 0.00 1.89
2647 3567 6.889301 TGAAGTACCGGTATCCTATAACAG 57.111 41.667 19.19 0.00 0.00 3.16
2651 3571 6.367983 AGTACCGGTATCCTATAACAGTTGA 58.632 40.000 19.19 0.00 0.00 3.18
2655 3575 5.408604 CCGGTATCCTATAACAGTTGAATGC 59.591 44.000 0.00 0.00 0.00 3.56
2656 3576 6.223852 CGGTATCCTATAACAGTTGAATGCT 58.776 40.000 0.00 0.00 0.00 3.79
2657 3577 6.366332 CGGTATCCTATAACAGTTGAATGCTC 59.634 42.308 0.00 0.00 0.00 4.26
2659 3579 7.386299 GGTATCCTATAACAGTTGAATGCTCTG 59.614 40.741 0.00 0.00 35.60 3.35
2660 3580 5.118990 TCCTATAACAGTTGAATGCTCTGC 58.881 41.667 0.00 0.00 33.12 4.26
2663 3583 3.360249 AACAGTTGAATGCTCTGCAAC 57.640 42.857 0.00 0.00 43.62 4.17
2672 3592 5.840715 TGAATGCTCTGCAACACAAATTAA 58.159 33.333 0.00 0.00 43.62 1.40
2673 3593 6.279123 TGAATGCTCTGCAACACAAATTAAA 58.721 32.000 0.00 0.00 43.62 1.52
2674 3594 6.200665 TGAATGCTCTGCAACACAAATTAAAC 59.799 34.615 0.00 0.00 43.62 2.01
2675 3595 5.261209 TGCTCTGCAACACAAATTAAACT 57.739 34.783 0.00 0.00 34.76 2.66
2676 3596 5.280945 TGCTCTGCAACACAAATTAAACTC 58.719 37.500 0.00 0.00 34.76 3.01
2678 3598 6.262049 TGCTCTGCAACACAAATTAAACTCTA 59.738 34.615 0.00 0.00 34.76 2.43
2679 3599 6.578919 GCTCTGCAACACAAATTAAACTCTAC 59.421 38.462 0.00 0.00 0.00 2.59
2681 3601 8.220755 TCTGCAACACAAATTAAACTCTACTT 57.779 30.769 0.00 0.00 0.00 2.24
2682 3602 8.128582 TCTGCAACACAAATTAAACTCTACTTG 58.871 33.333 0.00 0.00 0.00 3.16
2683 3603 7.767261 TGCAACACAAATTAAACTCTACTTGT 58.233 30.769 0.00 0.00 0.00 3.16
2705 4974 1.457455 CCAACAGGCCCAACAAGGT 60.457 57.895 0.00 0.00 34.66 3.50
2709 4978 2.521708 AGGCCCAACAAGGTGTGC 60.522 61.111 0.00 0.00 34.66 4.57
2733 5011 3.053831 TCCTTACTAGTTGCACAAGGC 57.946 47.619 14.25 0.00 45.13 4.35
2750 5028 8.255394 GCACAAGGCAATTAAAAGATAATGTT 57.745 30.769 0.00 0.00 43.97 2.71
2821 5134 9.974980 GAATAAAAAGTTGTTGGAAGGTGATTA 57.025 29.630 0.00 0.00 0.00 1.75
2828 5141 7.892609 AGTTGTTGGAAGGTGATTATTTTACC 58.107 34.615 0.00 0.00 34.68 2.85
2829 5142 7.507616 AGTTGTTGGAAGGTGATTATTTTACCA 59.492 33.333 0.00 0.00 36.94 3.25
2837 5150 9.758651 GAAGGTGATTATTTTACCAAAAACTGT 57.241 29.630 0.00 0.00 37.41 3.55
2871 5193 5.884792 AGGTTCATCTCTCCAAAGCATAAAG 59.115 40.000 0.00 0.00 0.00 1.85
2875 5197 5.190528 TCATCTCTCCAAAGCATAAAGGAGT 59.809 40.000 7.16 0.00 46.09 3.85
2885 5207 8.258708 CCAAAGCATAAAGGAGTAGTAAGTACT 58.741 37.037 0.00 0.00 45.34 2.73
2886 5208 9.088512 CAAAGCATAAAGGAGTAGTAAGTACTG 57.911 37.037 0.00 0.00 42.48 2.74
2946 5289 7.103641 TGTGTTGATTTCTACATAGGAAGACC 58.896 38.462 0.00 0.00 34.45 3.85
2947 5290 7.103641 GTGTTGATTTCTACATAGGAAGACCA 58.896 38.462 0.00 0.00 35.00 4.02
2948 5291 7.606456 GTGTTGATTTCTACATAGGAAGACCAA 59.394 37.037 0.00 0.00 35.00 3.67
2949 5292 8.160765 TGTTGATTTCTACATAGGAAGACCAAA 58.839 33.333 0.00 0.00 38.94 3.28
2950 5293 9.178758 GTTGATTTCTACATAGGAAGACCAAAT 57.821 33.333 0.00 0.00 38.94 2.32
2951 5294 8.964476 TGATTTCTACATAGGAAGACCAAATC 57.036 34.615 0.00 0.00 38.94 2.17
2953 5296 9.566432 GATTTCTACATAGGAAGACCAAATCAT 57.434 33.333 0.00 0.00 38.94 2.45
2954 5297 8.737168 TTTCTACATAGGAAGACCAAATCATG 57.263 34.615 0.00 0.00 38.94 3.07
2955 5298 7.437713 TCTACATAGGAAGACCAAATCATGT 57.562 36.000 0.00 0.00 38.94 3.21
2956 5299 7.275183 TCTACATAGGAAGACCAAATCATGTG 58.725 38.462 0.00 0.00 38.94 3.21
2959 5302 7.577303 ACATAGGAAGACCAAATCATGTGTAT 58.423 34.615 0.00 0.00 38.94 2.29
2960 5303 7.500227 ACATAGGAAGACCAAATCATGTGTATG 59.500 37.037 0.00 0.00 38.94 2.39
2966 6124 6.913170 AGACCAAATCATGTGTATGTGAAAC 58.087 36.000 0.00 0.00 35.73 2.78
3068 6231 7.563888 TGAATCTTCAGGAATTCTAATGCTG 57.436 36.000 5.23 3.99 37.56 4.41
3092 6255 6.096141 TGTCTGAAACCTATGAAACTTTGCAA 59.904 34.615 0.00 0.00 0.00 4.08
3127 6290 6.352516 TGCATGACATGTACATTATGTGGTA 58.647 36.000 16.62 0.00 38.78 3.25
3164 6327 7.278135 AGTATCTGAAAATGCTATCTTGCAGA 58.722 34.615 0.00 0.00 46.71 4.26
3167 6330 7.400599 TCTGAAAATGCTATCTTGCAGATTT 57.599 32.000 4.35 0.00 46.71 2.17
3205 6371 2.174107 CAAGGCACACGCATGTCG 59.826 61.111 7.79 7.79 45.38 4.35
3206 6372 3.726517 AAGGCACACGCATGTCGC 61.727 61.111 9.04 0.00 43.23 5.19
3207 6373 4.986645 AGGCACACGCATGTCGCA 62.987 61.111 9.00 0.00 42.60 5.10
3215 6381 1.532437 CACGCATGTCGCATATCCAAT 59.468 47.619 9.04 0.00 42.60 3.16
3222 6388 6.380995 GCATGTCGCATATCCAATTAATGAA 58.619 36.000 0.00 0.00 41.79 2.57
3223 6389 7.031372 GCATGTCGCATATCCAATTAATGAAT 58.969 34.615 0.00 0.00 41.79 2.57
3324 6490 7.094118 GGGCATTTTTAAGGTATGTGTAGTTCA 60.094 37.037 0.00 0.00 0.00 3.18
3326 6492 9.341899 GCATTTTTAAGGTATGTGTAGTTCAAG 57.658 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.740452 AGACCGACTCAAAGACGAAAC 58.260 47.619 0.00 0.00 35.52 2.78
32 33 1.273886 GAGGATCATAGCCCGGAAGAC 59.726 57.143 0.73 0.00 33.17 3.01
39 40 3.466395 ACTAGAGGAGGATCATAGCCC 57.534 52.381 0.00 0.00 36.25 5.19
42 43 5.556915 AGACGAACTAGAGGAGGATCATAG 58.443 45.833 0.00 0.00 36.25 2.23
44 45 4.447138 AGACGAACTAGAGGAGGATCAT 57.553 45.455 0.00 0.00 36.25 2.45
54 55 5.988310 TTTGTCCCAATAGACGAACTAGA 57.012 39.130 0.00 0.00 39.77 2.43
56 57 5.808540 CGAATTTGTCCCAATAGACGAACTA 59.191 40.000 0.00 0.00 41.76 2.24
64 65 3.308866 GTCCGTCGAATTTGTCCCAATAG 59.691 47.826 0.00 0.00 0.00 1.73
66 67 2.081462 GTCCGTCGAATTTGTCCCAAT 58.919 47.619 0.00 0.00 0.00 3.16
86 87 4.067999 CGATAGGAATCTACGACGAAGG 57.932 50.000 0.00 0.00 0.00 3.46
110 111 2.041216 CCCTAACCTTGCAACCCTAGTT 59.959 50.000 0.00 0.00 36.33 2.24
111 112 1.633945 CCCTAACCTTGCAACCCTAGT 59.366 52.381 0.00 0.00 0.00 2.57
119 120 0.323629 CCGAGAACCCTAACCTTGCA 59.676 55.000 0.00 0.00 0.00 4.08
140 141 1.064357 ACCAAATTTTGTCGACGCGTT 59.936 42.857 15.53 0.00 0.00 4.84
143 144 2.113910 ACACCAAATTTTGTCGACGC 57.886 45.000 11.62 0.00 0.00 5.19
158 159 7.039882 TGAATCGATCTAAAGAACCTAACACC 58.960 38.462 0.00 0.00 0.00 4.16
160 161 7.277981 GCTTGAATCGATCTAAAGAACCTAACA 59.722 37.037 15.19 0.00 0.00 2.41
163 164 6.873997 TGCTTGAATCGATCTAAAGAACCTA 58.126 36.000 15.19 0.00 0.00 3.08
166 167 7.688372 TGAATGCTTGAATCGATCTAAAGAAC 58.312 34.615 15.19 3.51 0.00 3.01
186 187 4.625742 AGTCGTTATCCTCGTTGTTGAATG 59.374 41.667 0.00 0.00 0.00 2.67
187 188 4.817517 AGTCGTTATCCTCGTTGTTGAAT 58.182 39.130 0.00 0.00 0.00 2.57
194 195 1.749634 CCTGGAGTCGTTATCCTCGTT 59.250 52.381 0.00 0.00 37.74 3.85
195 196 1.390565 CCTGGAGTCGTTATCCTCGT 58.609 55.000 0.00 0.00 37.74 4.18
197 198 0.389757 GCCCTGGAGTCGTTATCCTC 59.610 60.000 0.00 0.00 37.74 3.71
217 218 1.019278 GCGTGTGAATGACCATCGGT 61.019 55.000 0.00 0.00 39.44 4.69
218 219 1.018752 TGCGTGTGAATGACCATCGG 61.019 55.000 0.00 0.00 0.00 4.18
219 220 0.095245 GTGCGTGTGAATGACCATCG 59.905 55.000 0.00 0.00 0.00 3.84
220 221 0.095245 CGTGCGTGTGAATGACCATC 59.905 55.000 0.00 0.00 0.00 3.51
221 222 0.602638 ACGTGCGTGTGAATGACCAT 60.603 50.000 0.00 0.00 0.00 3.55
223 224 1.204062 CACGTGCGTGTGAATGACC 59.796 57.895 15.60 0.00 42.55 4.02
224 225 1.438710 GCACGTGCGTGTGAATGAC 60.439 57.895 26.77 0.00 46.90 3.06
226 227 0.385849 AATGCACGTGCGTGTGAATG 60.386 50.000 34.17 0.00 46.90 2.67
228 229 0.938008 TTAATGCACGTGCGTGTGAA 59.062 45.000 34.17 24.17 46.90 3.18
229 230 0.510790 CTTAATGCACGTGCGTGTGA 59.489 50.000 34.17 20.11 46.90 3.58
230 231 0.510790 TCTTAATGCACGTGCGTGTG 59.489 50.000 34.17 24.78 46.90 3.82
231 232 0.511221 GTCTTAATGCACGTGCGTGT 59.489 50.000 34.17 24.39 46.90 4.49
233 234 1.459592 GAAGTCTTAATGCACGTGCGT 59.540 47.619 33.22 31.21 45.83 5.24
234 235 1.201921 GGAAGTCTTAATGCACGTGCG 60.202 52.381 33.22 19.76 45.83 5.34
245 246 4.023980 ACGATGACATCCAGGAAGTCTTA 58.976 43.478 22.51 6.82 32.41 2.10
247 248 2.428890 GACGATGACATCCAGGAAGTCT 59.571 50.000 22.51 10.48 32.41 3.24
253 254 1.945387 CCTTGACGATGACATCCAGG 58.055 55.000 9.87 6.55 0.00 4.45
256 257 0.107703 TGGCCTTGACGATGACATCC 60.108 55.000 9.87 0.00 0.00 3.51
267 268 1.059584 TGGGACTGACTTGGCCTTGA 61.060 55.000 3.32 0.00 0.00 3.02
268 269 0.607489 CTGGGACTGACTTGGCCTTG 60.607 60.000 3.32 0.00 0.00 3.61
273 274 2.698855 CCATACTGGGACTGACTTGG 57.301 55.000 0.00 0.00 32.67 3.61
286 287 1.066858 CGTTGTCACAGCTCCCATACT 60.067 52.381 0.00 0.00 0.00 2.12
295 296 3.223435 GACACGCCGTTGTCACAGC 62.223 63.158 12.68 0.00 44.62 4.40
296 297 2.927618 CGACACGCCGTTGTCACAG 61.928 63.158 16.13 0.00 45.38 3.66
321 322 3.616721 ACTGCCGCCGTCAGAACT 61.617 61.111 0.63 0.00 35.61 3.01
343 344 2.126031 GTTCCTGGACCGACGAGC 60.126 66.667 0.00 0.00 0.00 5.03
349 350 0.324943 ACATCAAGGTTCCTGGACCG 59.675 55.000 0.00 0.00 44.62 4.79
442 443 5.567154 TCGTGATGTTTTCAATATGCAAACG 59.433 36.000 0.00 0.00 36.51 3.60
443 444 6.582295 AGTCGTGATGTTTTCAATATGCAAAC 59.418 34.615 0.00 0.00 34.79 2.93
444 445 6.581919 CAGTCGTGATGTTTTCAATATGCAAA 59.418 34.615 0.00 0.00 35.70 3.68
445 446 6.072783 TCAGTCGTGATGTTTTCAATATGCAA 60.073 34.615 0.00 0.00 35.70 4.08
453 454 7.722795 TTTTATCTCAGTCGTGATGTTTTCA 57.277 32.000 0.00 0.00 30.18 2.69
484 486 5.193099 AGGGATATGTGTACCTTTTTGCT 57.807 39.130 0.00 0.00 0.00 3.91
509 517 7.040961 CCCTCGGTTTTTCTTTAATAGTCACAA 60.041 37.037 0.00 0.00 0.00 3.33
513 521 6.315642 CCTCCCTCGGTTTTTCTTTAATAGTC 59.684 42.308 0.00 0.00 0.00 2.59
515 523 5.066117 GCCTCCCTCGGTTTTTCTTTAATAG 59.934 44.000 0.00 0.00 0.00 1.73
528 536 1.000896 CATTTTGGCCTCCCTCGGT 60.001 57.895 3.32 0.00 0.00 4.69
530 538 2.017049 CTTACATTTTGGCCTCCCTCG 58.983 52.381 3.32 0.00 0.00 4.63
531 539 1.751351 GCTTACATTTTGGCCTCCCTC 59.249 52.381 3.32 0.00 0.00 4.30
532 540 1.077005 TGCTTACATTTTGGCCTCCCT 59.923 47.619 3.32 0.00 0.00 4.20
534 542 2.760092 TCATGCTTACATTTTGGCCTCC 59.240 45.455 3.32 0.00 32.87 4.30
535 543 4.454728 TTCATGCTTACATTTTGGCCTC 57.545 40.909 3.32 0.00 32.87 4.70
536 544 4.888326 TTTCATGCTTACATTTTGGCCT 57.112 36.364 3.32 0.00 32.87 5.19
558 592 3.119849 GCGTGCCAACAACTAGAAATGAT 60.120 43.478 0.00 0.00 0.00 2.45
559 593 2.225491 GCGTGCCAACAACTAGAAATGA 59.775 45.455 0.00 0.00 0.00 2.57
560 594 2.584791 GCGTGCCAACAACTAGAAATG 58.415 47.619 0.00 0.00 0.00 2.32
561 595 1.196808 CGCGTGCCAACAACTAGAAAT 59.803 47.619 0.00 0.00 0.00 2.17
562 596 0.584396 CGCGTGCCAACAACTAGAAA 59.416 50.000 0.00 0.00 0.00 2.52
563 597 0.249531 TCGCGTGCCAACAACTAGAA 60.250 50.000 5.77 0.00 0.00 2.10
564 598 0.037697 ATCGCGTGCCAACAACTAGA 60.038 50.000 5.77 0.00 0.00 2.43
565 599 0.095245 CATCGCGTGCCAACAACTAG 59.905 55.000 5.77 0.00 0.00 2.57
566 600 1.295357 CCATCGCGTGCCAACAACTA 61.295 55.000 5.77 0.00 0.00 2.24
567 601 2.616330 CCATCGCGTGCCAACAACT 61.616 57.895 5.77 0.00 0.00 3.16
568 602 2.126888 CCATCGCGTGCCAACAAC 60.127 61.111 5.77 0.00 0.00 3.32
569 603 4.036804 GCCATCGCGTGCCAACAA 62.037 61.111 5.77 0.00 0.00 2.83
571 605 4.166011 GAGCCATCGCGTGCCAAC 62.166 66.667 5.77 0.00 41.18 3.77
589 623 1.592223 GTCTCCGTCTGGTCAAGGG 59.408 63.158 0.00 0.00 36.30 3.95
599 633 3.060602 CACTTTCTTTGAGGTCTCCGTC 58.939 50.000 0.00 0.00 0.00 4.79
609 643 5.431765 ACAGAAGAGAAGCACTTTCTTTGA 58.568 37.500 8.31 0.00 46.12 2.69
619 653 1.544825 CCGGGGACAGAAGAGAAGCA 61.545 60.000 0.00 0.00 0.00 3.91
636 672 1.181786 AAACCCAACCATACATGCCG 58.818 50.000 0.00 0.00 0.00 5.69
637 673 5.351948 AATAAAACCCAACCATACATGCC 57.648 39.130 0.00 0.00 0.00 4.40
638 674 6.091986 CACAAATAAAACCCAACCATACATGC 59.908 38.462 0.00 0.00 0.00 4.06
640 676 7.309770 ACACAAATAAAACCCAACCATACAT 57.690 32.000 0.00 0.00 0.00 2.29
641 677 6.732896 ACACAAATAAAACCCAACCATACA 57.267 33.333 0.00 0.00 0.00 2.29
642 678 9.713713 AAATACACAAATAAAACCCAACCATAC 57.286 29.630 0.00 0.00 0.00 2.39
643 679 9.712305 CAAATACACAAATAAAACCCAACCATA 57.288 29.630 0.00 0.00 0.00 2.74
644 680 7.663493 CCAAATACACAAATAAAACCCAACCAT 59.337 33.333 0.00 0.00 0.00 3.55
645 681 6.992715 CCAAATACACAAATAAAACCCAACCA 59.007 34.615 0.00 0.00 0.00 3.67
646 682 6.993308 ACCAAATACACAAATAAAACCCAACC 59.007 34.615 0.00 0.00 0.00 3.77
647 683 7.041712 CCACCAAATACACAAATAAAACCCAAC 60.042 37.037 0.00 0.00 0.00 3.77
648 684 6.992715 CCACCAAATACACAAATAAAACCCAA 59.007 34.615 0.00 0.00 0.00 4.12
649 685 6.326583 TCCACCAAATACACAAATAAAACCCA 59.673 34.615 0.00 0.00 0.00 4.51
650 686 6.760291 TCCACCAAATACACAAATAAAACCC 58.240 36.000 0.00 0.00 0.00 4.11
651 687 8.840833 ATTCCACCAAATACACAAATAAAACC 57.159 30.769 0.00 0.00 0.00 3.27
654 690 9.277783 CCAAATTCCACCAAATACACAAATAAA 57.722 29.630 0.00 0.00 0.00 1.40
655 691 7.389053 GCCAAATTCCACCAAATACACAAATAA 59.611 33.333 0.00 0.00 0.00 1.40
656 692 6.876257 GCCAAATTCCACCAAATACACAAATA 59.124 34.615 0.00 0.00 0.00 1.40
657 693 5.704978 GCCAAATTCCACCAAATACACAAAT 59.295 36.000 0.00 0.00 0.00 2.32
658 694 5.059833 GCCAAATTCCACCAAATACACAAA 58.940 37.500 0.00 0.00 0.00 2.83
659 695 4.101585 TGCCAAATTCCACCAAATACACAA 59.898 37.500 0.00 0.00 0.00 3.33
660 696 3.643320 TGCCAAATTCCACCAAATACACA 59.357 39.130 0.00 0.00 0.00 3.72
661 697 4.264460 TGCCAAATTCCACCAAATACAC 57.736 40.909 0.00 0.00 0.00 2.90
662 698 6.805016 ATATGCCAAATTCCACCAAATACA 57.195 33.333 0.00 0.00 0.00 2.29
663 699 8.504812 AAAATATGCCAAATTCCACCAAATAC 57.495 30.769 0.00 0.00 0.00 1.89
665 701 8.955388 GTTAAAATATGCCAAATTCCACCAAAT 58.045 29.630 0.00 0.00 0.00 2.32
666 702 7.391833 GGTTAAAATATGCCAAATTCCACCAAA 59.608 33.333 0.00 0.00 0.00 3.28
667 703 6.881602 GGTTAAAATATGCCAAATTCCACCAA 59.118 34.615 0.00 0.00 0.00 3.67
668 704 6.013379 TGGTTAAAATATGCCAAATTCCACCA 60.013 34.615 0.00 0.00 0.00 4.17
669 705 6.410540 TGGTTAAAATATGCCAAATTCCACC 58.589 36.000 0.00 0.00 0.00 4.61
670 706 7.913674 TTGGTTAAAATATGCCAAATTCCAC 57.086 32.000 0.00 0.00 37.97 4.02
676 712 6.441088 AGGGTTTGGTTAAAATATGCCAAA 57.559 33.333 3.78 3.78 45.36 3.28
677 713 6.441088 AAGGGTTTGGTTAAAATATGCCAA 57.559 33.333 0.00 0.00 39.00 4.52
678 714 5.336849 CGAAGGGTTTGGTTAAAATATGCCA 60.337 40.000 0.00 0.00 0.00 4.92
679 715 5.106442 CGAAGGGTTTGGTTAAAATATGCC 58.894 41.667 0.00 0.00 0.00 4.40
680 716 4.565166 GCGAAGGGTTTGGTTAAAATATGC 59.435 41.667 0.00 0.00 0.00 3.14
681 717 5.715070 TGCGAAGGGTTTGGTTAAAATATG 58.285 37.500 0.00 0.00 0.00 1.78
682 718 5.986501 TGCGAAGGGTTTGGTTAAAATAT 57.013 34.783 0.00 0.00 0.00 1.28
683 719 5.509332 GGTTGCGAAGGGTTTGGTTAAAATA 60.509 40.000 0.00 0.00 0.00 1.40
684 720 4.373527 GTTGCGAAGGGTTTGGTTAAAAT 58.626 39.130 0.00 0.00 0.00 1.82
685 721 3.430513 GGTTGCGAAGGGTTTGGTTAAAA 60.431 43.478 0.00 0.00 0.00 1.52
686 722 2.101082 GGTTGCGAAGGGTTTGGTTAAA 59.899 45.455 0.00 0.00 0.00 1.52
687 723 1.682323 GGTTGCGAAGGGTTTGGTTAA 59.318 47.619 0.00 0.00 0.00 2.01
688 724 1.320507 GGTTGCGAAGGGTTTGGTTA 58.679 50.000 0.00 0.00 0.00 2.85
689 725 1.396607 GGGTTGCGAAGGGTTTGGTT 61.397 55.000 0.00 0.00 0.00 3.67
690 726 1.830847 GGGTTGCGAAGGGTTTGGT 60.831 57.895 0.00 0.00 0.00 3.67
691 727 1.395826 TTGGGTTGCGAAGGGTTTGG 61.396 55.000 0.00 0.00 0.00 3.28
692 728 0.461961 TTTGGGTTGCGAAGGGTTTG 59.538 50.000 0.00 0.00 0.00 2.93
693 729 1.419381 ATTTGGGTTGCGAAGGGTTT 58.581 45.000 0.00 0.00 0.00 3.27
694 730 1.419381 AATTTGGGTTGCGAAGGGTT 58.581 45.000 0.00 0.00 0.00 4.11
695 731 2.296073 TAATTTGGGTTGCGAAGGGT 57.704 45.000 0.00 0.00 0.00 4.34
696 732 3.885724 ATTAATTTGGGTTGCGAAGGG 57.114 42.857 0.00 0.00 0.00 3.95
697 733 4.081697 AGGAATTAATTTGGGTTGCGAAGG 60.082 41.667 1.43 0.00 0.00 3.46
698 734 5.072040 AGGAATTAATTTGGGTTGCGAAG 57.928 39.130 1.43 0.00 0.00 3.79
699 735 6.591750 TTAGGAATTAATTTGGGTTGCGAA 57.408 33.333 1.43 0.00 0.00 4.70
700 736 6.183360 GGATTAGGAATTAATTTGGGTTGCGA 60.183 38.462 1.43 0.00 32.09 5.10
701 737 5.983118 GGATTAGGAATTAATTTGGGTTGCG 59.017 40.000 1.43 0.00 32.09 4.85
702 738 7.124573 AGGATTAGGAATTAATTTGGGTTGC 57.875 36.000 1.43 0.00 32.09 4.17
742 778 9.745880 GGAATTGTCTGATTAGTCGAGTTATTA 57.254 33.333 0.00 0.00 0.00 0.98
743 779 7.711339 GGGAATTGTCTGATTAGTCGAGTTATT 59.289 37.037 0.00 0.00 0.00 1.40
744 780 7.147724 TGGGAATTGTCTGATTAGTCGAGTTAT 60.148 37.037 0.00 0.00 0.00 1.89
745 781 6.153851 TGGGAATTGTCTGATTAGTCGAGTTA 59.846 38.462 0.00 0.00 0.00 2.24
746 782 5.046591 TGGGAATTGTCTGATTAGTCGAGTT 60.047 40.000 0.00 0.00 0.00 3.01
838 884 7.882179 AGTGGTACTACATGGATTTGTTTTTC 58.118 34.615 12.29 0.00 0.00 2.29
1006 1066 4.218852 CGATTTATAGAGAGGAGGGGACAC 59.781 50.000 0.00 0.00 0.00 3.67
1090 1170 3.945981 AGAAGTCGAAGAAGAAGACCC 57.054 47.619 0.00 0.00 39.69 4.46
1129 1212 1.684983 TGGAAACGGATCTATCGGGAC 59.315 52.381 0.00 0.00 0.00 4.46
1131 1214 3.006967 AGAATGGAAACGGATCTATCGGG 59.993 47.826 0.00 0.00 0.00 5.14
1141 1224 3.372206 CAGTAGCTCAAGAATGGAAACGG 59.628 47.826 0.00 0.00 0.00 4.44
1517 1671 4.357947 TGGTCGTGTCGAGGCTGC 62.358 66.667 0.00 0.00 36.23 5.25
1664 1818 2.915659 TGGCCTTGACCTCGTCGT 60.916 61.111 3.32 0.00 34.95 4.34
1746 1900 1.812571 GATGGATGGACGTTTGCTTGT 59.187 47.619 0.00 0.00 0.00 3.16
1748 1902 2.496899 AGATGGATGGACGTTTGCTT 57.503 45.000 0.00 0.00 0.00 3.91
1752 1913 3.264450 AGGAAGAAGATGGATGGACGTTT 59.736 43.478 0.00 0.00 0.00 3.60
1760 1922 3.005261 CGATCACGAGGAAGAAGATGGAT 59.995 47.826 0.00 0.00 42.66 3.41
1782 1944 1.337821 AAAGTCTCGTTGCGATCGAC 58.662 50.000 21.57 10.98 34.61 4.20
1805 1975 6.917477 GCGCAAATTGATTAGTTAATGGATGA 59.083 34.615 0.30 0.00 0.00 2.92
1842 2024 0.911769 CCATCCTTCACCACCTGCTA 59.088 55.000 0.00 0.00 0.00 3.49
1951 2133 1.151668 CTGCACCTTCTTCTTCACCG 58.848 55.000 0.00 0.00 0.00 4.94
2265 2454 4.043200 GTGCTGGCAGGTTTCCGC 62.043 66.667 17.64 0.55 0.00 5.54
2305 2942 0.725686 CAAGAACTCGATGCTGGCAG 59.274 55.000 10.94 10.94 0.00 4.85
2307 2944 0.723981 GACAAGAACTCGATGCTGGC 59.276 55.000 0.00 0.00 0.00 4.85
2308 2945 0.994995 CGACAAGAACTCGATGCTGG 59.005 55.000 0.00 0.00 32.65 4.85
2309 2946 1.982612 TCGACAAGAACTCGATGCTG 58.017 50.000 0.00 0.00 35.26 4.41
2310 2947 2.949451 ATCGACAAGAACTCGATGCT 57.051 45.000 2.64 0.00 46.58 3.79
2315 3024 2.599082 GGCTTACATCGACAAGAACTCG 59.401 50.000 7.29 0.00 0.00 4.18
2316 3025 2.599082 CGGCTTACATCGACAAGAACTC 59.401 50.000 7.29 0.00 0.00 3.01
2322 3031 2.488937 TGTACTCGGCTTACATCGACAA 59.511 45.455 0.00 0.00 0.00 3.18
2324 3033 2.717530 CTGTACTCGGCTTACATCGAC 58.282 52.381 0.00 0.00 0.00 4.20
2326 3035 1.478137 GCTGTACTCGGCTTACATCG 58.522 55.000 0.00 0.00 42.20 3.84
2338 3047 6.710597 TGATTAATTACCGAGAGCTGTACT 57.289 37.500 0.00 0.00 0.00 2.73
2339 3048 5.402867 GCTGATTAATTACCGAGAGCTGTAC 59.597 44.000 0.00 0.00 0.00 2.90
2340 3049 5.068591 TGCTGATTAATTACCGAGAGCTGTA 59.931 40.000 0.00 0.00 0.00 2.74
2342 3051 4.371786 TGCTGATTAATTACCGAGAGCTG 58.628 43.478 0.00 0.00 0.00 4.24
2343 3052 4.502259 CCTGCTGATTAATTACCGAGAGCT 60.502 45.833 0.00 0.00 0.00 4.09
2344 3053 3.743396 CCTGCTGATTAATTACCGAGAGC 59.257 47.826 0.00 0.00 0.00 4.09
2345 3054 4.985409 GTCCTGCTGATTAATTACCGAGAG 59.015 45.833 0.00 0.00 0.00 3.20
2347 3056 4.508124 GTGTCCTGCTGATTAATTACCGAG 59.492 45.833 0.00 0.00 0.00 4.63
2349 3058 3.245284 CGTGTCCTGCTGATTAATTACCG 59.755 47.826 0.00 0.00 0.00 4.02
2350 3059 4.270325 GTCGTGTCCTGCTGATTAATTACC 59.730 45.833 0.00 0.00 0.00 2.85
2351 3060 4.868171 TGTCGTGTCCTGCTGATTAATTAC 59.132 41.667 0.00 0.00 0.00 1.89
2352 3061 5.079689 TGTCGTGTCCTGCTGATTAATTA 57.920 39.130 0.00 0.00 0.00 1.40
2356 3065 2.167662 TCTGTCGTGTCCTGCTGATTA 58.832 47.619 0.00 0.00 0.00 1.75
2357 3066 0.969149 TCTGTCGTGTCCTGCTGATT 59.031 50.000 0.00 0.00 0.00 2.57
2358 3067 1.134877 CATCTGTCGTGTCCTGCTGAT 60.135 52.381 0.00 0.00 0.00 2.90
2359 3068 0.244721 CATCTGTCGTGTCCTGCTGA 59.755 55.000 0.00 0.00 0.00 4.26
2360 3069 1.357258 GCATCTGTCGTGTCCTGCTG 61.357 60.000 0.00 0.00 0.00 4.41
2361 3070 1.079543 GCATCTGTCGTGTCCTGCT 60.080 57.895 0.00 0.00 0.00 4.24
2362 3071 2.447887 CGCATCTGTCGTGTCCTGC 61.448 63.158 0.00 0.00 0.00 4.85
2363 3072 0.170339 TACGCATCTGTCGTGTCCTG 59.830 55.000 9.01 0.00 40.69 3.86
2364 3073 0.452184 CTACGCATCTGTCGTGTCCT 59.548 55.000 9.01 0.00 40.69 3.85
2366 3075 1.140407 GGCTACGCATCTGTCGTGTC 61.140 60.000 9.01 2.83 40.69 3.67
2367 3076 1.153823 GGCTACGCATCTGTCGTGT 60.154 57.895 9.01 0.00 40.69 4.49
2368 3077 2.224217 CGGCTACGCATCTGTCGTG 61.224 63.158 9.01 0.00 40.69 4.35
2371 3080 0.317436 CTCTCGGCTACGCATCTGTC 60.317 60.000 0.00 0.00 40.69 3.51
2372 3081 1.032657 ACTCTCGGCTACGCATCTGT 61.033 55.000 0.00 0.00 40.69 3.41
2373 3082 0.101399 AACTCTCGGCTACGCATCTG 59.899 55.000 0.00 0.00 40.69 2.90
2374 3083 1.676746 TAACTCTCGGCTACGCATCT 58.323 50.000 0.00 0.00 40.69 2.90
2376 3085 1.536284 GCTTAACTCTCGGCTACGCAT 60.536 52.381 0.00 0.00 40.69 4.73
2379 3088 0.591741 CGGCTTAACTCTCGGCTACG 60.592 60.000 0.00 0.00 42.74 3.51
2380 3089 0.870735 GCGGCTTAACTCTCGGCTAC 60.871 60.000 0.00 0.00 0.00 3.58
2382 3091 2.184579 GCGGCTTAACTCTCGGCT 59.815 61.111 0.00 0.00 0.00 5.52
2383 3092 2.125673 TGCGGCTTAACTCTCGGC 60.126 61.111 0.00 0.00 0.00 5.54
2384 3093 1.519455 CCTGCGGCTTAACTCTCGG 60.519 63.158 0.00 0.00 0.00 4.63
2386 3095 1.362406 GCACCTGCGGCTTAACTCTC 61.362 60.000 0.00 0.00 0.00 3.20
2387 3096 1.376037 GCACCTGCGGCTTAACTCT 60.376 57.895 0.00 0.00 0.00 3.24
2388 3097 3.178539 GCACCTGCGGCTTAACTC 58.821 61.111 0.00 0.00 0.00 3.01
2398 3107 0.723981 GATCTTTGTCGAGCACCTGC 59.276 55.000 0.00 0.00 42.49 4.85
2399 3108 2.084610 TGATCTTTGTCGAGCACCTG 57.915 50.000 0.00 0.00 0.00 4.00
2401 3110 3.896648 TTTTGATCTTTGTCGAGCACC 57.103 42.857 0.00 0.00 0.00 5.01
2424 3319 2.602878 GCAAACATCTGTCAAGCCATG 58.397 47.619 0.00 0.00 0.00 3.66
2428 3323 0.874390 TCGGCAAACATCTGTCAAGC 59.126 50.000 0.00 0.00 0.00 4.01
2430 3325 2.416747 CTCTCGGCAAACATCTGTCAA 58.583 47.619 0.00 0.00 0.00 3.18
2432 3327 0.723981 GCTCTCGGCAAACATCTGTC 59.276 55.000 0.00 0.00 41.35 3.51
2433 3328 0.322975 AGCTCTCGGCAAACATCTGT 59.677 50.000 0.00 0.00 44.79 3.41
2434 3329 2.299993 TAGCTCTCGGCAAACATCTG 57.700 50.000 0.00 0.00 44.79 2.90
2435 3330 2.028112 TGTTAGCTCTCGGCAAACATCT 60.028 45.455 0.00 0.00 44.79 2.90
2436 3331 2.346803 TGTTAGCTCTCGGCAAACATC 58.653 47.619 0.00 0.00 44.79 3.06
2437 3332 2.472695 TGTTAGCTCTCGGCAAACAT 57.527 45.000 0.00 0.00 44.79 2.71
2439 3334 1.666189 GGATGTTAGCTCTCGGCAAAC 59.334 52.381 0.00 0.00 44.79 2.93
2440 3335 1.277842 TGGATGTTAGCTCTCGGCAAA 59.722 47.619 0.00 0.00 44.79 3.68
2441 3336 0.901827 TGGATGTTAGCTCTCGGCAA 59.098 50.000 0.00 0.00 44.79 4.52
2442 3337 0.461548 CTGGATGTTAGCTCTCGGCA 59.538 55.000 0.00 0.00 44.79 5.69
2443 3338 0.461961 ACTGGATGTTAGCTCTCGGC 59.538 55.000 0.00 0.00 42.19 5.54
2444 3339 2.969628 AACTGGATGTTAGCTCTCGG 57.030 50.000 0.00 0.00 37.07 4.63
2445 3340 4.106197 GTGTAACTGGATGTTAGCTCTCG 58.894 47.826 0.00 0.00 41.29 4.04
2446 3341 4.106197 CGTGTAACTGGATGTTAGCTCTC 58.894 47.826 0.00 0.00 41.29 3.20
2448 3343 3.187700 CCGTGTAACTGGATGTTAGCTC 58.812 50.000 0.00 0.00 41.29 4.09
2449 3344 2.677037 GCCGTGTAACTGGATGTTAGCT 60.677 50.000 0.00 0.00 41.29 3.32
2450 3345 1.664151 GCCGTGTAACTGGATGTTAGC 59.336 52.381 0.00 0.00 41.29 3.09
2451 3346 2.967362 TGCCGTGTAACTGGATGTTAG 58.033 47.619 0.00 0.00 41.29 2.34
2452 3347 3.404224 TTGCCGTGTAACTGGATGTTA 57.596 42.857 0.00 0.00 39.89 2.41
2453 3348 2.264005 TTGCCGTGTAACTGGATGTT 57.736 45.000 0.00 0.00 42.31 2.71
2454 3349 2.489938 ATTGCCGTGTAACTGGATGT 57.510 45.000 0.00 0.00 33.32 3.06
2455 3350 2.872245 CCTATTGCCGTGTAACTGGATG 59.128 50.000 0.00 0.00 33.32 3.51
2456 3351 2.769663 TCCTATTGCCGTGTAACTGGAT 59.230 45.455 0.00 0.00 33.32 3.41
2458 3353 2.684001 TCCTATTGCCGTGTAACTGG 57.316 50.000 0.00 0.00 34.39 4.00
2459 3354 3.309682 CACATCCTATTGCCGTGTAACTG 59.690 47.826 0.00 0.00 31.75 3.16
2462 3357 2.285083 GCACATCCTATTGCCGTGTAA 58.715 47.619 0.00 0.00 32.21 2.41
2463 3358 1.208293 TGCACATCCTATTGCCGTGTA 59.792 47.619 0.00 0.00 38.00 2.90
2465 3360 0.378257 GTGCACATCCTATTGCCGTG 59.622 55.000 13.17 0.00 38.00 4.94
2467 3362 0.747644 TGGTGCACATCCTATTGCCG 60.748 55.000 20.43 0.00 38.00 5.69
2468 3363 1.027357 CTGGTGCACATCCTATTGCC 58.973 55.000 20.43 0.00 38.00 4.52
2469 3364 1.402968 CACTGGTGCACATCCTATTGC 59.597 52.381 20.43 0.00 39.33 3.56
2470 3365 2.019249 CCACTGGTGCACATCCTATTG 58.981 52.381 20.43 5.13 0.00 1.90
2471 3366 1.683011 GCCACTGGTGCACATCCTATT 60.683 52.381 20.43 0.00 0.00 1.73
2473 3368 1.299648 GCCACTGGTGCACATCCTA 59.700 57.895 20.43 0.00 0.00 2.94
2474 3369 2.034687 GCCACTGGTGCACATCCT 59.965 61.111 20.43 0.00 0.00 3.24
2480 3375 1.670730 CATACGTGCCACTGGTGCA 60.671 57.895 0.00 0.00 36.12 4.57
2481 3376 0.953471 TTCATACGTGCCACTGGTGC 60.953 55.000 0.00 0.00 0.00 5.01
2482 3377 1.398041 CATTCATACGTGCCACTGGTG 59.602 52.381 0.00 0.00 0.00 4.17
2483 3378 1.277842 TCATTCATACGTGCCACTGGT 59.722 47.619 0.00 0.00 0.00 4.00
2484 3379 2.022764 TCATTCATACGTGCCACTGG 57.977 50.000 0.00 0.00 0.00 4.00
2485 3380 3.197265 TGATCATTCATACGTGCCACTG 58.803 45.455 0.00 0.00 0.00 3.66
2487 3382 4.776743 GAATGATCATTCATACGTGCCAC 58.223 43.478 33.70 10.64 44.89 5.01
2500 3395 7.891498 TTCTCATGTTGGATTGAATGATCAT 57.109 32.000 1.18 1.18 34.96 2.45
2501 3396 7.891498 ATTCTCATGTTGGATTGAATGATCA 57.109 32.000 0.00 0.00 0.00 2.92
2502 3397 8.195436 ACAATTCTCATGTTGGATTGAATGATC 58.805 33.333 20.91 0.00 0.00 2.92
2504 3399 7.470935 ACAATTCTCATGTTGGATTGAATGA 57.529 32.000 20.91 0.00 0.00 2.57
2515 3410 6.262944 TGTTAGCTGTCAACAATTCTCATGTT 59.737 34.615 0.00 0.00 41.50 2.71
2516 3411 5.764686 TGTTAGCTGTCAACAATTCTCATGT 59.235 36.000 0.00 0.00 33.11 3.21
2518 3413 6.000219 ACTGTTAGCTGTCAACAATTCTCAT 59.000 36.000 0.00 0.00 35.57 2.90
2520 3415 5.931441 ACTGTTAGCTGTCAACAATTCTC 57.069 39.130 0.00 0.00 35.57 2.87
2521 3416 6.525629 ACTACTGTTAGCTGTCAACAATTCT 58.474 36.000 0.00 0.00 35.57 2.40
2522 3417 6.787085 ACTACTGTTAGCTGTCAACAATTC 57.213 37.500 0.00 0.00 35.57 2.17
2523 3418 7.417612 CAAACTACTGTTAGCTGTCAACAATT 58.582 34.615 0.00 0.00 35.57 2.32
2524 3419 6.513393 GCAAACTACTGTTAGCTGTCAACAAT 60.513 38.462 0.00 0.00 35.57 2.71
2525 3420 5.220777 GCAAACTACTGTTAGCTGTCAACAA 60.221 40.000 0.00 0.00 35.57 2.83
2527 3422 4.511826 AGCAAACTACTGTTAGCTGTCAAC 59.488 41.667 0.00 0.00 34.96 3.18
2528 3423 4.703897 AGCAAACTACTGTTAGCTGTCAA 58.296 39.130 0.00 0.00 34.96 3.18
2530 3425 6.969828 ATAAGCAAACTACTGTTAGCTGTC 57.030 37.500 0.00 0.00 34.96 3.51
2533 3428 5.648092 CCCAATAAGCAAACTACTGTTAGCT 59.352 40.000 0.00 0.00 34.96 3.32
2534 3429 5.676331 GCCCAATAAGCAAACTACTGTTAGC 60.676 44.000 0.00 0.00 34.96 3.09
2535 3430 5.648092 AGCCCAATAAGCAAACTACTGTTAG 59.352 40.000 0.00 0.00 34.96 2.34
2536 3431 5.566469 AGCCCAATAAGCAAACTACTGTTA 58.434 37.500 0.00 0.00 34.96 2.41
2538 3433 4.010349 GAGCCCAATAAGCAAACTACTGT 58.990 43.478 0.00 0.00 0.00 3.55
2539 3434 3.378427 GGAGCCCAATAAGCAAACTACTG 59.622 47.826 0.00 0.00 0.00 2.74
2540 3435 3.267031 AGGAGCCCAATAAGCAAACTACT 59.733 43.478 0.00 0.00 0.00 2.57
2541 3436 3.621558 AGGAGCCCAATAAGCAAACTAC 58.378 45.455 0.00 0.00 0.00 2.73
2543 3438 2.041620 TGAGGAGCCCAATAAGCAAACT 59.958 45.455 0.00 0.00 0.00 2.66
2544 3439 2.424956 CTGAGGAGCCCAATAAGCAAAC 59.575 50.000 0.00 0.00 0.00 2.93
2546 3441 1.635487 ACTGAGGAGCCCAATAAGCAA 59.365 47.619 0.00 0.00 0.00 3.91
2547 3442 1.065199 CACTGAGGAGCCCAATAAGCA 60.065 52.381 0.00 0.00 0.00 3.91
2549 3444 3.181461 CCTACACTGAGGAGCCCAATAAG 60.181 52.174 0.00 0.00 39.15 1.73
2550 3445 2.771943 CCTACACTGAGGAGCCCAATAA 59.228 50.000 0.00 0.00 39.15 1.40
2552 3447 1.207791 CCTACACTGAGGAGCCCAAT 58.792 55.000 0.00 0.00 39.15 3.16
2553 3448 0.116342 TCCTACACTGAGGAGCCCAA 59.884 55.000 0.00 0.00 40.89 4.12
2555 3450 1.501582 ATTCCTACACTGAGGAGCCC 58.498 55.000 0.00 0.00 46.43 5.19
2556 3451 3.274288 CAAATTCCTACACTGAGGAGCC 58.726 50.000 0.00 0.00 46.43 4.70
2560 3455 4.832248 TGCTACAAATTCCTACACTGAGG 58.168 43.478 0.00 0.00 38.03 3.86
2561 3456 5.163814 GCTTGCTACAAATTCCTACACTGAG 60.164 44.000 0.00 0.00 0.00 3.35
2563 3458 4.455533 TGCTTGCTACAAATTCCTACACTG 59.544 41.667 0.00 0.00 0.00 3.66
2566 3461 3.756434 GGTGCTTGCTACAAATTCCTACA 59.244 43.478 0.00 0.00 0.00 2.74
2567 3462 3.756434 TGGTGCTTGCTACAAATTCCTAC 59.244 43.478 0.00 0.00 0.00 3.18
2568 3463 4.027674 TGGTGCTTGCTACAAATTCCTA 57.972 40.909 0.00 0.00 0.00 2.94
2569 3464 2.875296 TGGTGCTTGCTACAAATTCCT 58.125 42.857 0.00 0.00 0.00 3.36
2570 3465 3.578688 CTTGGTGCTTGCTACAAATTCC 58.421 45.455 0.00 0.00 0.00 3.01
2572 3467 3.030668 GCTTGGTGCTTGCTACAAATT 57.969 42.857 0.00 0.00 38.95 1.82
2573 3468 2.730550 GCTTGGTGCTTGCTACAAAT 57.269 45.000 0.00 0.00 38.95 2.32
2600 3495 5.258051 TGGATTGGTACCTTGGTTTATCAC 58.742 41.667 14.36 0.00 0.00 3.06
2602 3497 6.126409 TCATGGATTGGTACCTTGGTTTATC 58.874 40.000 14.36 4.76 34.64 1.75
2603 3498 6.086011 TCATGGATTGGTACCTTGGTTTAT 57.914 37.500 14.36 0.00 34.64 1.40
2605 3500 4.396357 TCATGGATTGGTACCTTGGTTT 57.604 40.909 14.36 0.00 34.64 3.27
2607 3502 3.333680 ACTTCATGGATTGGTACCTTGGT 59.666 43.478 14.36 0.00 34.64 3.67
2608 3503 3.968265 ACTTCATGGATTGGTACCTTGG 58.032 45.455 14.36 0.00 34.64 3.61
2609 3504 4.881850 GGTACTTCATGGATTGGTACCTTG 59.118 45.833 14.36 1.78 45.04 3.61
2610 3505 4.383770 CGGTACTTCATGGATTGGTACCTT 60.384 45.833 14.36 0.00 45.79 3.50
2611 3506 3.134081 CGGTACTTCATGGATTGGTACCT 59.866 47.826 14.36 0.00 45.79 3.08
2613 3508 3.118519 ACCGGTACTTCATGGATTGGTAC 60.119 47.826 4.49 0.00 34.00 3.34
2614 3509 3.109151 ACCGGTACTTCATGGATTGGTA 58.891 45.455 4.49 0.00 0.00 3.25
2615 3510 1.913419 ACCGGTACTTCATGGATTGGT 59.087 47.619 4.49 0.00 0.00 3.67
2616 3511 2.710096 ACCGGTACTTCATGGATTGG 57.290 50.000 4.49 0.00 0.00 3.16
2618 3513 4.232091 AGGATACCGGTACTTCATGGATT 58.768 43.478 18.55 0.00 37.17 3.01
2619 3514 3.858135 AGGATACCGGTACTTCATGGAT 58.142 45.455 18.55 0.00 37.17 3.41
2620 3515 3.323774 AGGATACCGGTACTTCATGGA 57.676 47.619 18.55 0.00 37.17 3.41
2621 3516 6.209986 TGTTATAGGATACCGGTACTTCATGG 59.790 42.308 18.55 0.00 37.17 3.66
2622 3517 7.039923 ACTGTTATAGGATACCGGTACTTCATG 60.040 40.741 18.55 0.00 37.17 3.07
2623 3518 7.008941 ACTGTTATAGGATACCGGTACTTCAT 58.991 38.462 18.55 12.06 37.17 2.57
2624 3519 6.367983 ACTGTTATAGGATACCGGTACTTCA 58.632 40.000 18.55 3.19 37.17 3.02
2625 3520 6.890979 ACTGTTATAGGATACCGGTACTTC 57.109 41.667 18.55 11.75 37.17 3.01
2626 3521 6.835488 TCAACTGTTATAGGATACCGGTACTT 59.165 38.462 18.55 9.99 37.17 2.24
2628 3523 6.639632 TCAACTGTTATAGGATACCGGTAC 57.360 41.667 18.55 10.90 37.17 3.34
2629 3524 7.663827 CATTCAACTGTTATAGGATACCGGTA 58.336 38.462 18.46 18.46 37.17 4.02
2631 3526 5.408604 GCATTCAACTGTTATAGGATACCGG 59.591 44.000 0.00 0.00 37.17 5.28
2632 3527 6.223852 AGCATTCAACTGTTATAGGATACCG 58.776 40.000 0.00 0.00 37.17 4.02
2633 3528 7.386299 CAGAGCATTCAACTGTTATAGGATACC 59.614 40.741 0.00 0.00 37.17 2.73
2634 3529 7.095439 GCAGAGCATTCAACTGTTATAGGATAC 60.095 40.741 0.00 0.00 34.60 2.24
2635 3530 6.931281 GCAGAGCATTCAACTGTTATAGGATA 59.069 38.462 0.00 0.00 34.60 2.59
2639 3559 6.128200 TGTTGCAGAGCATTCAACTGTTATAG 60.128 38.462 10.78 0.00 38.76 1.31
2643 3563 2.689471 TGTTGCAGAGCATTCAACTGTT 59.311 40.909 10.78 0.00 38.76 3.16
2644 3564 2.033801 GTGTTGCAGAGCATTCAACTGT 59.966 45.455 10.78 0.00 38.76 3.55
2645 3565 2.033675 TGTGTTGCAGAGCATTCAACTG 59.966 45.455 10.78 0.00 38.76 3.16
2647 3567 2.780065 TGTGTTGCAGAGCATTCAAC 57.220 45.000 0.00 0.00 38.76 3.18
2651 3571 6.282930 AGTTTAATTTGTGTTGCAGAGCATT 58.717 32.000 0.00 0.00 38.76 3.56
2655 3575 7.865707 AGTAGAGTTTAATTTGTGTTGCAGAG 58.134 34.615 0.00 0.00 0.00 3.35
2656 3576 7.801716 AGTAGAGTTTAATTTGTGTTGCAGA 57.198 32.000 0.00 0.00 0.00 4.26
2657 3577 7.915397 ACAAGTAGAGTTTAATTTGTGTTGCAG 59.085 33.333 0.00 0.00 0.00 4.41
2659 3579 8.050121 CACAAGTAGAGTTTAATTTGTGTTGC 57.950 34.615 6.92 0.00 40.06 4.17
2663 3583 7.012894 TGGGACACAAGTAGAGTTTAATTTGTG 59.987 37.037 12.13 12.13 46.45 3.33
2672 3592 3.181454 CCTGTTGGGACACAAGTAGAGTT 60.181 47.826 0.00 0.00 40.38 3.01
2673 3593 2.368875 CCTGTTGGGACACAAGTAGAGT 59.631 50.000 0.00 0.00 40.38 3.24
2674 3594 2.872038 GCCTGTTGGGACACAAGTAGAG 60.872 54.545 0.00 0.00 40.38 2.43
2675 3595 1.071699 GCCTGTTGGGACACAAGTAGA 59.928 52.381 0.00 0.00 40.38 2.59
2676 3596 1.523758 GCCTGTTGGGACACAAGTAG 58.476 55.000 0.00 0.00 40.38 2.57
2678 3598 1.152756 GGCCTGTTGGGACACAAGT 60.153 57.895 0.00 0.00 44.40 3.16
2679 3599 3.763671 GGCCTGTTGGGACACAAG 58.236 61.111 0.00 0.00 44.40 3.16
2705 4974 3.244735 TGCAACTAGTAAGGATTGGCACA 60.245 43.478 0.00 0.00 0.00 4.57
2709 4978 4.396166 CCTTGTGCAACTAGTAAGGATTGG 59.604 45.833 13.97 1.67 40.18 3.16
2794 5079 6.811954 TCACCTTCCAACAACTTTTTATTCC 58.188 36.000 0.00 0.00 0.00 3.01
2804 5092 7.662897 TGGTAAAATAATCACCTTCCAACAAC 58.337 34.615 0.00 0.00 33.28 3.32
2821 5134 8.706322 ATGAGTCCTACAGTTTTTGGTAAAAT 57.294 30.769 0.00 0.00 35.80 1.82
2824 5137 7.016858 ACCTATGAGTCCTACAGTTTTTGGTAA 59.983 37.037 0.00 0.00 0.00 2.85
2828 5141 6.934645 TGAACCTATGAGTCCTACAGTTTTTG 59.065 38.462 0.00 0.00 0.00 2.44
2829 5142 7.074653 TGAACCTATGAGTCCTACAGTTTTT 57.925 36.000 0.00 0.00 0.00 1.94
2837 5150 5.134509 TGGAGAGATGAACCTATGAGTCCTA 59.865 44.000 0.00 0.00 0.00 2.94
2839 5152 4.219115 TGGAGAGATGAACCTATGAGTCC 58.781 47.826 0.00 0.00 0.00 3.85
2946 5289 7.591057 ACTTTCGTTTCACATACACATGATTTG 59.409 33.333 0.00 0.00 35.96 2.32
2947 5290 7.648142 ACTTTCGTTTCACATACACATGATTT 58.352 30.769 0.00 0.00 35.96 2.17
2948 5291 7.202016 ACTTTCGTTTCACATACACATGATT 57.798 32.000 0.00 0.00 35.96 2.57
2949 5292 6.801539 ACTTTCGTTTCACATACACATGAT 57.198 33.333 0.00 0.00 35.96 2.45
2950 5293 6.612247 AACTTTCGTTTCACATACACATGA 57.388 33.333 0.00 0.00 35.96 3.07
2951 5294 6.142161 CCAAACTTTCGTTTCACATACACATG 59.858 38.462 0.00 0.00 41.23 3.21
2953 5296 5.124138 ACCAAACTTTCGTTTCACATACACA 59.876 36.000 0.00 0.00 41.23 3.72
2954 5297 5.575019 ACCAAACTTTCGTTTCACATACAC 58.425 37.500 0.00 0.00 41.23 2.90
2955 5298 5.821516 ACCAAACTTTCGTTTCACATACA 57.178 34.783 0.00 0.00 41.23 2.29
2956 5299 6.951643 AGTACCAAACTTTCGTTTCACATAC 58.048 36.000 0.00 0.00 41.23 2.39
2959 5302 5.883503 AAGTACCAAACTTTCGTTTCACA 57.116 34.783 0.00 0.00 46.61 3.58
2990 6148 4.406972 TGTGGGTTTGAATTTTCATGGACA 59.593 37.500 0.00 0.00 37.00 4.02
2991 6149 4.954875 TGTGGGTTTGAATTTTCATGGAC 58.045 39.130 0.00 0.00 37.00 4.02
2992 6150 5.620738 TTGTGGGTTTGAATTTTCATGGA 57.379 34.783 0.00 0.00 37.00 3.41
2993 6151 6.880942 ATTTGTGGGTTTGAATTTTCATGG 57.119 33.333 0.00 0.00 37.00 3.66
3042 6201 8.630917 CAGCATTAGAATTCCTGAAGATTCAAT 58.369 33.333 0.65 0.00 36.64 2.57
3049 6210 6.111382 TCAGACAGCATTAGAATTCCTGAAG 58.889 40.000 13.52 5.20 0.00 3.02
3052 6213 6.404074 GGTTTCAGACAGCATTAGAATTCCTG 60.404 42.308 0.65 4.55 0.00 3.86
3053 6214 5.649831 GGTTTCAGACAGCATTAGAATTCCT 59.350 40.000 0.65 0.00 0.00 3.36
3054 6215 5.649831 AGGTTTCAGACAGCATTAGAATTCC 59.350 40.000 0.65 0.00 0.00 3.01
3066 6229 6.145535 GCAAAGTTTCATAGGTTTCAGACAG 58.854 40.000 0.00 0.00 0.00 3.51
3068 6231 6.072112 TGCAAAGTTTCATAGGTTTCAGAC 57.928 37.500 0.00 0.00 0.00 3.51
3092 6255 2.760634 TGTCATGCATAACGACACCT 57.239 45.000 12.87 0.00 34.83 4.00
3167 6330 1.529438 CCGCGTCTTCTGTTAGCAAAA 59.471 47.619 4.92 0.00 0.00 2.44
3172 6335 0.716108 CTTGCCGCGTCTTCTGTTAG 59.284 55.000 4.92 0.00 0.00 2.34
3173 6336 0.669318 CCTTGCCGCGTCTTCTGTTA 60.669 55.000 4.92 0.00 0.00 2.41
3200 6366 8.024865 CACATTCATTAATTGGATATGCGACAT 58.975 33.333 0.00 0.00 0.00 3.06
3278 6444 7.523293 TGCCCATATATTGGTGAAAACATAG 57.477 36.000 4.83 0.00 44.83 2.23
3295 6461 8.056400 ACTACACATACCTTAAAAATGCCCATA 58.944 33.333 0.00 0.00 0.00 2.74
3296 6462 6.895204 ACTACACATACCTTAAAAATGCCCAT 59.105 34.615 0.00 0.00 0.00 4.00
3298 6464 6.769134 ACTACACATACCTTAAAAATGCCC 57.231 37.500 0.00 0.00 0.00 5.36
3300 6466 9.341899 CTTGAACTACACATACCTTAAAAATGC 57.658 33.333 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.