Multiple sequence alignment - TraesCS7D01G497100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G497100 chr7D 100.000 2801 0 0 1 2801 603727536 603730336 0.000000e+00 5173
1 TraesCS7D01G497100 chr7A 92.854 2379 138 10 434 2801 696403850 696406207 0.000000e+00 3422
2 TraesCS7D01G497100 chr7A 97.133 558 16 0 1427 1984 696349212 696349769 0.000000e+00 942
3 TraesCS7D01G497100 chr7A 92.771 83 6 0 1346 1428 696340426 696340508 1.360000e-23 121
4 TraesCS7D01G497100 chr7B 94.462 1300 62 2 517 1813 686014410 686015702 0.000000e+00 1993
5 TraesCS7D01G497100 chr7B 91.127 417 33 4 2182 2597 686016172 686016585 1.880000e-156 562
6 TraesCS7D01G497100 chr7B 92.857 364 22 4 1817 2179 686015765 686016125 2.470000e-145 525
7 TraesCS7D01G497100 chr6B 73.994 1342 253 65 536 1813 679385396 679384087 9.140000e-125 457
8 TraesCS7D01G497100 chr6B 72.809 1438 271 80 441 1810 678881197 678882582 2.040000e-101 379
9 TraesCS7D01G497100 chr5B 89.100 211 23 0 1 211 653282350 653282560 2.140000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G497100 chr7D 603727536 603730336 2800 False 5173.000000 5173 100.000000 1 2801 1 chr7D.!!$F1 2800
1 TraesCS7D01G497100 chr7A 696403850 696406207 2357 False 3422.000000 3422 92.854000 434 2801 1 chr7A.!!$F3 2367
2 TraesCS7D01G497100 chr7A 696349212 696349769 557 False 942.000000 942 97.133000 1427 1984 1 chr7A.!!$F2 557
3 TraesCS7D01G497100 chr7B 686014410 686016585 2175 False 1026.666667 1993 92.815333 517 2597 3 chr7B.!!$F1 2080
4 TraesCS7D01G497100 chr6B 679384087 679385396 1309 True 457.000000 457 73.994000 536 1813 1 chr6B.!!$R1 1277
5 TraesCS7D01G497100 chr6B 678881197 678882582 1385 False 379.000000 379 72.809000 441 1810 1 chr6B.!!$F1 1369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.030705 ATTGAGAGGAGCTAGGGGCA 60.031 55.0 0.00 0.0 44.79 5.36 F
431 432 0.036294 GGCCAGCTCGAGGTACTTTT 60.036 55.0 18.15 0.0 41.55 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 1450 0.042188 CATTTGGGAATACGAGCGCG 60.042 55.0 8.75 8.75 44.79 6.86 R
2387 2577 0.377554 CTCGCTCGGTCGACTATGTT 59.622 55.0 16.46 0.00 34.46 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.754667 CTCGCAGCTGCAGCCTCA 62.755 66.667 36.03 15.39 43.38 3.86
23 24 3.054503 CAGCTGCAGCCTCACCAC 61.055 66.667 34.39 5.26 43.38 4.16
24 25 4.341783 AGCTGCAGCCTCACCACC 62.342 66.667 34.39 4.46 43.38 4.61
28 29 4.101448 GCAGCCTCACCACCGGAT 62.101 66.667 9.46 0.00 0.00 4.18
29 30 2.187946 CAGCCTCACCACCGGATC 59.812 66.667 9.46 0.00 0.00 3.36
30 31 2.039624 AGCCTCACCACCGGATCT 59.960 61.111 9.46 0.00 0.00 2.75
31 32 2.187946 GCCTCACCACCGGATCTG 59.812 66.667 9.46 0.00 0.00 2.90
32 33 2.187946 CCTCACCACCGGATCTGC 59.812 66.667 9.46 0.00 0.00 4.26
33 34 2.202797 CTCACCACCGGATCTGCG 60.203 66.667 9.46 0.00 0.00 5.18
34 35 4.451150 TCACCACCGGATCTGCGC 62.451 66.667 9.46 0.00 0.00 6.09
35 36 4.457496 CACCACCGGATCTGCGCT 62.457 66.667 9.46 0.00 0.00 5.92
36 37 4.457496 ACCACCGGATCTGCGCTG 62.457 66.667 9.46 8.88 0.00 5.18
37 38 4.147449 CCACCGGATCTGCGCTGA 62.147 66.667 19.70 19.70 0.00 4.26
38 39 2.584418 CACCGGATCTGCGCTGAG 60.584 66.667 21.74 10.90 0.00 3.35
56 57 2.495866 CCATGGTGGCGGAATTGC 59.504 61.111 2.57 0.00 0.00 3.56
57 58 2.349672 CCATGGTGGCGGAATTGCA 61.350 57.895 2.57 0.00 36.28 4.08
58 59 1.140161 CATGGTGGCGGAATTGCAG 59.860 57.895 0.00 0.00 36.28 4.41
59 60 2.053865 ATGGTGGCGGAATTGCAGG 61.054 57.895 0.00 0.00 36.28 4.85
60 61 2.361104 GGTGGCGGAATTGCAGGA 60.361 61.111 0.00 0.00 36.28 3.86
61 62 2.700773 GGTGGCGGAATTGCAGGAC 61.701 63.158 0.00 0.00 36.28 3.85
62 63 2.361104 TGGCGGAATTGCAGGACC 60.361 61.111 0.00 0.00 36.28 4.46
63 64 2.044946 GGCGGAATTGCAGGACCT 60.045 61.111 0.00 0.00 36.28 3.85
64 65 2.409870 GGCGGAATTGCAGGACCTG 61.410 63.158 17.83 17.83 36.28 4.00
65 66 1.377202 GCGGAATTGCAGGACCTGA 60.377 57.895 26.25 5.41 32.44 3.86
66 67 0.960364 GCGGAATTGCAGGACCTGAA 60.960 55.000 26.25 12.87 32.44 3.02
67 68 0.804989 CGGAATTGCAGGACCTGAAC 59.195 55.000 26.25 8.93 32.44 3.18
68 69 0.804989 GGAATTGCAGGACCTGAACG 59.195 55.000 26.25 0.00 32.44 3.95
69 70 0.804989 GAATTGCAGGACCTGAACGG 59.195 55.000 26.25 0.00 32.44 4.44
70 71 0.400213 AATTGCAGGACCTGAACGGA 59.600 50.000 26.25 0.00 36.31 4.69
71 72 0.036010 ATTGCAGGACCTGAACGGAG 60.036 55.000 26.25 0.00 36.31 4.63
72 73 2.111999 TTGCAGGACCTGAACGGAGG 62.112 60.000 26.25 0.00 39.28 4.30
73 74 2.982130 CAGGACCTGAACGGAGGG 59.018 66.667 17.22 0.00 37.45 4.30
74 75 1.609501 CAGGACCTGAACGGAGGGA 60.610 63.158 17.22 0.00 37.45 4.20
75 76 1.305381 AGGACCTGAACGGAGGGAG 60.305 63.158 0.00 0.00 37.45 4.30
76 77 2.579738 GACCTGAACGGAGGGAGC 59.420 66.667 0.00 0.00 37.45 4.70
77 78 3.003763 ACCTGAACGGAGGGAGCC 61.004 66.667 0.00 0.00 37.45 4.70
109 110 3.361977 GGTGCGGCCACGATGTTT 61.362 61.111 2.24 0.00 44.60 2.83
110 111 2.126888 GTGCGGCCACGATGTTTG 60.127 61.111 2.24 0.00 44.60 2.93
111 112 4.036804 TGCGGCCACGATGTTTGC 62.037 61.111 2.24 0.00 44.60 3.68
112 113 4.036804 GCGGCCACGATGTTTGCA 62.037 61.111 2.24 0.00 44.60 4.08
113 114 2.176546 CGGCCACGATGTTTGCAG 59.823 61.111 2.24 0.00 44.60 4.41
114 115 2.568090 GGCCACGATGTTTGCAGG 59.432 61.111 0.00 0.00 0.00 4.85
115 116 2.268076 GGCCACGATGTTTGCAGGT 61.268 57.895 0.00 0.00 0.00 4.00
116 117 1.081242 GCCACGATGTTTGCAGGTG 60.081 57.895 0.00 0.00 34.65 4.00
117 118 1.580942 CCACGATGTTTGCAGGTGG 59.419 57.895 0.00 6.33 42.60 4.61
118 119 1.580942 CACGATGTTTGCAGGTGGG 59.419 57.895 0.00 0.00 32.63 4.61
119 120 2.268076 ACGATGTTTGCAGGTGGGC 61.268 57.895 0.00 0.00 0.00 5.36
120 121 2.267351 CGATGTTTGCAGGTGGGCA 61.267 57.895 0.00 0.00 43.19 5.36
126 127 3.506743 TGCAGGTGGGCAAGGGAA 61.507 61.111 0.00 0.00 41.65 3.97
127 128 2.991540 GCAGGTGGGCAAGGGAAC 60.992 66.667 0.00 0.00 0.00 3.62
128 129 2.672996 CAGGTGGGCAAGGGAACG 60.673 66.667 0.00 0.00 0.00 3.95
129 130 3.966543 AGGTGGGCAAGGGAACGG 61.967 66.667 0.00 0.00 0.00 4.44
136 137 4.109675 CAAGGGAACGGCCGGGAT 62.110 66.667 31.76 15.69 37.63 3.85
137 138 2.365901 AAGGGAACGGCCGGGATA 60.366 61.111 31.76 0.00 37.63 2.59
138 139 1.996748 AAGGGAACGGCCGGGATAA 60.997 57.895 31.76 0.00 37.63 1.75
139 140 1.564483 AAGGGAACGGCCGGGATAAA 61.564 55.000 31.76 0.00 37.63 1.40
140 141 1.525306 GGGAACGGCCGGGATAAAG 60.525 63.158 31.76 0.00 37.63 1.85
141 142 1.523524 GGAACGGCCGGGATAAAGA 59.476 57.895 31.76 0.00 0.00 2.52
142 143 0.107557 GGAACGGCCGGGATAAAGAA 60.108 55.000 31.76 0.00 0.00 2.52
143 144 1.012086 GAACGGCCGGGATAAAGAAC 58.988 55.000 31.76 3.97 0.00 3.01
144 145 0.325602 AACGGCCGGGATAAAGAACA 59.674 50.000 31.76 0.00 0.00 3.18
145 146 0.325602 ACGGCCGGGATAAAGAACAA 59.674 50.000 31.76 0.00 0.00 2.83
146 147 1.014352 CGGCCGGGATAAAGAACAAG 58.986 55.000 20.10 0.00 0.00 3.16
147 148 1.677820 CGGCCGGGATAAAGAACAAGT 60.678 52.381 20.10 0.00 0.00 3.16
148 149 2.014857 GGCCGGGATAAAGAACAAGTC 58.985 52.381 2.18 0.00 0.00 3.01
149 150 2.617021 GGCCGGGATAAAGAACAAGTCA 60.617 50.000 2.18 0.00 0.00 3.41
150 151 3.279434 GCCGGGATAAAGAACAAGTCAT 58.721 45.455 2.18 0.00 0.00 3.06
151 152 3.694566 GCCGGGATAAAGAACAAGTCATT 59.305 43.478 2.18 0.00 0.00 2.57
152 153 4.201920 GCCGGGATAAAGAACAAGTCATTC 60.202 45.833 2.18 0.00 0.00 2.67
153 154 4.941263 CCGGGATAAAGAACAAGTCATTCA 59.059 41.667 0.00 0.00 0.00 2.57
154 155 5.065218 CCGGGATAAAGAACAAGTCATTCAG 59.935 44.000 0.00 0.00 0.00 3.02
155 156 5.065218 CGGGATAAAGAACAAGTCATTCAGG 59.935 44.000 0.00 0.00 0.00 3.86
156 157 5.946377 GGGATAAAGAACAAGTCATTCAGGT 59.054 40.000 0.00 0.00 0.00 4.00
157 158 7.110155 GGGATAAAGAACAAGTCATTCAGGTA 58.890 38.462 0.00 0.00 0.00 3.08
158 159 7.281100 GGGATAAAGAACAAGTCATTCAGGTAG 59.719 40.741 0.00 0.00 0.00 3.18
159 160 7.281100 GGATAAAGAACAAGTCATTCAGGTAGG 59.719 40.741 0.00 0.00 0.00 3.18
160 161 5.825593 AAGAACAAGTCATTCAGGTAGGA 57.174 39.130 0.00 0.00 0.00 2.94
161 162 6.380079 AAGAACAAGTCATTCAGGTAGGAT 57.620 37.500 0.00 0.00 0.00 3.24
162 163 7.496346 AAGAACAAGTCATTCAGGTAGGATA 57.504 36.000 0.00 0.00 0.00 2.59
163 164 7.496346 AGAACAAGTCATTCAGGTAGGATAA 57.504 36.000 0.00 0.00 0.00 1.75
164 165 7.560368 AGAACAAGTCATTCAGGTAGGATAAG 58.440 38.462 0.00 0.00 0.00 1.73
165 166 6.240549 ACAAGTCATTCAGGTAGGATAAGG 57.759 41.667 0.00 0.00 0.00 2.69
166 167 4.965200 AGTCATTCAGGTAGGATAAGGC 57.035 45.455 0.00 0.00 0.00 4.35
167 168 4.298626 AGTCATTCAGGTAGGATAAGGCA 58.701 43.478 0.00 0.00 0.00 4.75
168 169 4.346418 AGTCATTCAGGTAGGATAAGGCAG 59.654 45.833 0.00 0.00 0.00 4.85
169 170 4.345257 GTCATTCAGGTAGGATAAGGCAGA 59.655 45.833 0.00 0.00 0.00 4.26
170 171 5.012561 GTCATTCAGGTAGGATAAGGCAGAT 59.987 44.000 0.00 0.00 0.00 2.90
171 172 6.211584 GTCATTCAGGTAGGATAAGGCAGATA 59.788 42.308 0.00 0.00 0.00 1.98
172 173 6.438741 TCATTCAGGTAGGATAAGGCAGATAG 59.561 42.308 0.00 0.00 0.00 2.08
173 174 4.678256 TCAGGTAGGATAAGGCAGATAGG 58.322 47.826 0.00 0.00 0.00 2.57
174 175 4.357097 TCAGGTAGGATAAGGCAGATAGGA 59.643 45.833 0.00 0.00 0.00 2.94
175 176 5.087323 CAGGTAGGATAAGGCAGATAGGAA 58.913 45.833 0.00 0.00 0.00 3.36
176 177 5.544176 CAGGTAGGATAAGGCAGATAGGAAA 59.456 44.000 0.00 0.00 0.00 3.13
177 178 6.214412 CAGGTAGGATAAGGCAGATAGGAAAT 59.786 42.308 0.00 0.00 0.00 2.17
178 179 6.795000 AGGTAGGATAAGGCAGATAGGAAATT 59.205 38.462 0.00 0.00 0.00 1.82
179 180 6.881602 GGTAGGATAAGGCAGATAGGAAATTG 59.118 42.308 0.00 0.00 0.00 2.32
180 181 6.770286 AGGATAAGGCAGATAGGAAATTGA 57.230 37.500 0.00 0.00 0.00 2.57
181 182 6.777782 AGGATAAGGCAGATAGGAAATTGAG 58.222 40.000 0.00 0.00 0.00 3.02
182 183 6.560304 AGGATAAGGCAGATAGGAAATTGAGA 59.440 38.462 0.00 0.00 0.00 3.27
183 184 6.878389 GGATAAGGCAGATAGGAAATTGAGAG 59.122 42.308 0.00 0.00 0.00 3.20
184 185 4.703379 AGGCAGATAGGAAATTGAGAGG 57.297 45.455 0.00 0.00 0.00 3.69
185 186 4.302067 AGGCAGATAGGAAATTGAGAGGA 58.698 43.478 0.00 0.00 0.00 3.71
186 187 4.347583 AGGCAGATAGGAAATTGAGAGGAG 59.652 45.833 0.00 0.00 0.00 3.69
187 188 4.064388 GCAGATAGGAAATTGAGAGGAGC 58.936 47.826 0.00 0.00 0.00 4.70
188 189 4.202346 GCAGATAGGAAATTGAGAGGAGCT 60.202 45.833 0.00 0.00 0.00 4.09
189 190 5.011533 GCAGATAGGAAATTGAGAGGAGCTA 59.988 44.000 0.00 0.00 0.00 3.32
190 191 6.690530 CAGATAGGAAATTGAGAGGAGCTAG 58.309 44.000 0.00 0.00 0.00 3.42
191 192 5.779771 AGATAGGAAATTGAGAGGAGCTAGG 59.220 44.000 0.00 0.00 0.00 3.02
192 193 3.044894 AGGAAATTGAGAGGAGCTAGGG 58.955 50.000 0.00 0.00 0.00 3.53
193 194 2.105649 GGAAATTGAGAGGAGCTAGGGG 59.894 54.545 0.00 0.00 0.00 4.79
194 195 1.135960 AATTGAGAGGAGCTAGGGGC 58.864 55.000 0.00 0.00 42.19 5.80
195 196 0.030705 ATTGAGAGGAGCTAGGGGCA 60.031 55.000 0.00 0.00 44.79 5.36
196 197 0.978146 TTGAGAGGAGCTAGGGGCAC 60.978 60.000 0.00 0.00 44.79 5.01
217 218 2.654877 GTCACGTGGACGGTGGAT 59.345 61.111 17.00 0.00 44.95 3.41
218 219 1.885157 GTCACGTGGACGGTGGATA 59.115 57.895 17.00 0.00 44.95 2.59
219 220 0.179145 GTCACGTGGACGGTGGATAG 60.179 60.000 17.00 0.00 44.95 2.08
220 221 1.141019 CACGTGGACGGTGGATAGG 59.859 63.158 7.95 0.00 44.95 2.57
221 222 1.000521 ACGTGGACGGTGGATAGGA 60.001 57.895 3.93 0.00 44.95 2.94
222 223 1.035932 ACGTGGACGGTGGATAGGAG 61.036 60.000 3.93 0.00 44.95 3.69
223 224 1.442148 GTGGACGGTGGATAGGAGC 59.558 63.158 0.00 0.00 0.00 4.70
224 225 1.760875 TGGACGGTGGATAGGAGCC 60.761 63.158 0.00 0.00 0.00 4.70
225 226 1.457831 GGACGGTGGATAGGAGCCT 60.458 63.158 0.00 0.00 0.00 4.58
226 227 0.178970 GGACGGTGGATAGGAGCCTA 60.179 60.000 0.00 0.00 0.00 3.93
227 228 1.249407 GACGGTGGATAGGAGCCTAG 58.751 60.000 2.33 0.00 31.45 3.02
228 229 0.851469 ACGGTGGATAGGAGCCTAGA 59.149 55.000 2.33 0.00 31.45 2.43
229 230 1.429687 ACGGTGGATAGGAGCCTAGAT 59.570 52.381 2.33 0.00 31.45 1.98
230 231 2.648304 ACGGTGGATAGGAGCCTAGATA 59.352 50.000 2.33 0.00 31.45 1.98
231 232 3.269906 ACGGTGGATAGGAGCCTAGATAT 59.730 47.826 2.33 0.00 31.45 1.63
232 233 3.886505 CGGTGGATAGGAGCCTAGATATC 59.113 52.174 2.33 0.00 31.45 1.63
233 234 4.628959 CGGTGGATAGGAGCCTAGATATCA 60.629 50.000 5.32 0.00 31.45 2.15
234 235 4.892934 GGTGGATAGGAGCCTAGATATCAG 59.107 50.000 5.32 0.66 31.45 2.90
235 236 4.340950 GTGGATAGGAGCCTAGATATCAGC 59.659 50.000 5.32 4.95 31.45 4.26
236 237 3.895041 GGATAGGAGCCTAGATATCAGCC 59.105 52.174 5.32 0.00 31.45 4.85
237 238 1.846007 AGGAGCCTAGATATCAGCCG 58.154 55.000 5.32 0.00 0.00 5.52
238 239 0.820871 GGAGCCTAGATATCAGCCGG 59.179 60.000 5.32 0.00 0.00 6.13
239 240 0.820871 GAGCCTAGATATCAGCCGGG 59.179 60.000 2.18 0.00 0.00 5.73
240 241 0.115349 AGCCTAGATATCAGCCGGGT 59.885 55.000 0.00 0.00 0.00 5.28
241 242 0.247736 GCCTAGATATCAGCCGGGTG 59.752 60.000 27.73 27.73 0.00 4.61
242 243 1.924731 CCTAGATATCAGCCGGGTGA 58.075 55.000 36.22 36.22 0.00 4.02
243 244 2.461695 CCTAGATATCAGCCGGGTGAT 58.538 52.381 41.45 41.45 40.40 3.06
244 245 2.834549 CCTAGATATCAGCCGGGTGATT 59.165 50.000 43.91 32.41 38.21 2.57
245 246 3.261897 CCTAGATATCAGCCGGGTGATTT 59.738 47.826 43.91 37.49 38.21 2.17
246 247 3.409026 AGATATCAGCCGGGTGATTTC 57.591 47.619 43.91 40.80 38.21 2.17
247 248 2.705658 AGATATCAGCCGGGTGATTTCA 59.294 45.455 41.98 31.94 37.36 2.69
248 249 2.620251 TATCAGCCGGGTGATTTCAG 57.380 50.000 43.91 15.98 38.21 3.02
249 250 0.620556 ATCAGCCGGGTGATTTCAGT 59.379 50.000 37.16 19.95 33.07 3.41
250 251 0.036388 TCAGCCGGGTGATTTCAGTC 60.036 55.000 31.67 0.00 0.00 3.51
251 252 0.321564 CAGCCGGGTGATTTCAGTCA 60.322 55.000 29.63 0.00 0.00 3.41
252 253 0.620556 AGCCGGGTGATTTCAGTCAT 59.379 50.000 4.72 0.00 0.00 3.06
253 254 1.004745 AGCCGGGTGATTTCAGTCATT 59.995 47.619 4.72 0.00 0.00 2.57
254 255 1.818674 GCCGGGTGATTTCAGTCATTT 59.181 47.619 2.18 0.00 0.00 2.32
255 256 2.159379 GCCGGGTGATTTCAGTCATTTC 60.159 50.000 2.18 0.00 0.00 2.17
256 257 2.423538 CCGGGTGATTTCAGTCATTTCC 59.576 50.000 0.00 0.00 0.00 3.13
257 258 2.423538 CGGGTGATTTCAGTCATTTCCC 59.576 50.000 0.00 0.00 31.72 3.97
258 259 3.430453 GGGTGATTTCAGTCATTTCCCA 58.570 45.455 0.00 0.00 33.99 4.37
259 260 4.026052 GGGTGATTTCAGTCATTTCCCAT 58.974 43.478 0.00 0.00 33.99 4.00
260 261 4.467438 GGGTGATTTCAGTCATTTCCCATT 59.533 41.667 0.00 0.00 33.99 3.16
261 262 5.413499 GGTGATTTCAGTCATTTCCCATTG 58.587 41.667 0.00 0.00 0.00 2.82
262 263 5.185635 GGTGATTTCAGTCATTTCCCATTGA 59.814 40.000 0.00 0.00 0.00 2.57
263 264 6.127253 GGTGATTTCAGTCATTTCCCATTGAT 60.127 38.462 0.00 0.00 0.00 2.57
264 265 7.325694 GTGATTTCAGTCATTTCCCATTGATT 58.674 34.615 0.00 0.00 0.00 2.57
265 266 8.469200 GTGATTTCAGTCATTTCCCATTGATTA 58.531 33.333 0.00 0.00 0.00 1.75
266 267 9.033711 TGATTTCAGTCATTTCCCATTGATTAA 57.966 29.630 0.00 0.00 0.00 1.40
268 269 9.826574 ATTTCAGTCATTTCCCATTGATTAATG 57.173 29.630 3.26 3.26 42.66 1.90
269 270 8.592529 TTCAGTCATTTCCCATTGATTAATGA 57.407 30.769 11.57 0.00 45.21 2.57
273 274 7.205297 GTCATTTCCCATTGATTAATGACTGG 58.795 38.462 11.57 4.57 45.71 4.00
274 275 7.068593 GTCATTTCCCATTGATTAATGACTGGA 59.931 37.037 12.02 7.10 45.71 3.86
275 276 7.286087 TCATTTCCCATTGATTAATGACTGGAG 59.714 37.037 12.02 3.90 45.21 3.86
276 277 5.974156 TCCCATTGATTAATGACTGGAGA 57.026 39.130 12.02 5.85 45.21 3.71
277 278 6.520021 TCCCATTGATTAATGACTGGAGAT 57.480 37.500 12.02 0.00 45.21 2.75
278 279 6.914665 TCCCATTGATTAATGACTGGAGATT 58.085 36.000 12.02 0.00 45.21 2.40
279 280 8.044574 TCCCATTGATTAATGACTGGAGATTA 57.955 34.615 12.02 0.00 45.21 1.75
280 281 7.939039 TCCCATTGATTAATGACTGGAGATTAC 59.061 37.037 12.02 0.00 45.21 1.89
281 282 7.095060 CCCATTGATTAATGACTGGAGATTACG 60.095 40.741 12.02 0.00 45.21 3.18
282 283 7.657354 CCATTGATTAATGACTGGAGATTACGA 59.343 37.037 11.57 0.00 45.21 3.43
283 284 8.706936 CATTGATTAATGACTGGAGATTACGAG 58.293 37.037 4.21 0.00 45.21 4.18
284 285 7.582667 TGATTAATGACTGGAGATTACGAGA 57.417 36.000 0.00 0.00 0.00 4.04
285 286 8.007405 TGATTAATGACTGGAGATTACGAGAA 57.993 34.615 0.00 0.00 0.00 2.87
286 287 8.474831 TGATTAATGACTGGAGATTACGAGAAA 58.525 33.333 0.00 0.00 0.00 2.52
287 288 8.649973 ATTAATGACTGGAGATTACGAGAAAC 57.350 34.615 0.00 0.00 0.00 2.78
288 289 5.923733 ATGACTGGAGATTACGAGAAACT 57.076 39.130 0.00 0.00 0.00 2.66
289 290 5.723672 TGACTGGAGATTACGAGAAACTT 57.276 39.130 0.00 0.00 0.00 2.66
290 291 6.829229 TGACTGGAGATTACGAGAAACTTA 57.171 37.500 0.00 0.00 0.00 2.24
291 292 7.223260 TGACTGGAGATTACGAGAAACTTAA 57.777 36.000 0.00 0.00 0.00 1.85
292 293 7.837863 TGACTGGAGATTACGAGAAACTTAAT 58.162 34.615 0.00 0.00 0.00 1.40
293 294 8.311836 TGACTGGAGATTACGAGAAACTTAATT 58.688 33.333 0.00 0.00 0.00 1.40
294 295 9.798994 GACTGGAGATTACGAGAAACTTAATTA 57.201 33.333 0.00 0.00 0.00 1.40
305 306 8.969267 ACGAGAAACTTAATTATATTGAGCTCG 58.031 33.333 9.64 0.00 43.01 5.03
306 307 9.181805 CGAGAAACTTAATTATATTGAGCTCGA 57.818 33.333 6.01 6.01 40.76 4.04
322 323 9.606631 ATTGAGCTCGAGATATTCTTTAGTTTT 57.393 29.630 18.75 0.00 0.00 2.43
323 324 9.436957 TTGAGCTCGAGATATTCTTTAGTTTTT 57.563 29.630 18.75 0.00 0.00 1.94
356 357 7.793927 AACAGATATTCTTTAGTTAGCAGGC 57.206 36.000 0.00 0.00 0.00 4.85
357 358 7.130681 ACAGATATTCTTTAGTTAGCAGGCT 57.869 36.000 0.00 0.00 0.00 4.58
358 359 7.569240 ACAGATATTCTTTAGTTAGCAGGCTT 58.431 34.615 0.00 0.00 0.00 4.35
359 360 8.049721 ACAGATATTCTTTAGTTAGCAGGCTTT 58.950 33.333 0.00 0.00 0.00 3.51
360 361 8.341173 CAGATATTCTTTAGTTAGCAGGCTTTG 58.659 37.037 0.00 0.00 0.00 2.77
361 362 8.049721 AGATATTCTTTAGTTAGCAGGCTTTGT 58.950 33.333 0.00 0.00 0.00 2.83
362 363 5.689383 TTCTTTAGTTAGCAGGCTTTGTG 57.311 39.130 0.00 0.00 0.00 3.33
363 364 4.714632 TCTTTAGTTAGCAGGCTTTGTGT 58.285 39.130 0.00 0.00 0.00 3.72
364 365 5.860611 TCTTTAGTTAGCAGGCTTTGTGTA 58.139 37.500 0.00 0.00 0.00 2.90
365 366 5.932303 TCTTTAGTTAGCAGGCTTTGTGTAG 59.068 40.000 0.00 0.00 0.00 2.74
366 367 2.427506 AGTTAGCAGGCTTTGTGTAGC 58.572 47.619 0.00 0.00 40.48 3.58
382 383 3.312718 GCCATGGGCCACTTGCAA 61.313 61.111 9.28 0.00 44.06 4.08
383 384 2.662070 GCCATGGGCCACTTGCAAT 61.662 57.895 9.28 0.00 44.06 3.56
384 385 1.984817 CCATGGGCCACTTGCAATT 59.015 52.632 9.28 0.00 43.89 2.32
385 386 0.391927 CCATGGGCCACTTGCAATTG 60.392 55.000 9.28 9.70 43.89 2.32
386 387 0.391927 CATGGGCCACTTGCAATTGG 60.392 55.000 26.94 26.94 43.89 3.16
387 388 0.837260 ATGGGCCACTTGCAATTGGT 60.837 50.000 29.91 12.96 43.89 3.67
388 389 1.053264 TGGGCCACTTGCAATTGGTT 61.053 50.000 29.91 0.00 43.89 3.67
389 390 0.108396 GGGCCACTTGCAATTGGTTT 59.892 50.000 29.91 0.00 43.89 3.27
390 391 1.228533 GGCCACTTGCAATTGGTTTG 58.771 50.000 29.91 11.00 43.89 2.93
391 392 1.228533 GCCACTTGCAATTGGTTTGG 58.771 50.000 29.91 16.63 40.77 3.28
392 393 1.228533 CCACTTGCAATTGGTTTGGC 58.771 50.000 23.94 0.00 35.75 4.52
393 394 1.228533 CACTTGCAATTGGTTTGGCC 58.771 50.000 8.84 0.00 35.75 5.36
394 395 0.108396 ACTTGCAATTGGTTTGGCCC 59.892 50.000 7.72 0.00 35.75 5.80
395 396 0.950071 CTTGCAATTGGTTTGGCCCG 60.950 55.000 7.72 0.00 35.75 6.13
396 397 1.402896 TTGCAATTGGTTTGGCCCGA 61.403 50.000 7.72 0.00 35.75 5.14
397 398 1.079888 GCAATTGGTTTGGCCCGAG 60.080 57.895 7.72 0.00 35.75 4.63
398 399 1.531739 GCAATTGGTTTGGCCCGAGA 61.532 55.000 7.72 0.00 35.75 4.04
399 400 0.965439 CAATTGGTTTGGCCCGAGAA 59.035 50.000 0.00 0.00 36.04 2.87
400 401 1.342819 CAATTGGTTTGGCCCGAGAAA 59.657 47.619 0.00 0.00 36.04 2.52
401 402 1.710816 ATTGGTTTGGCCCGAGAAAA 58.289 45.000 0.00 0.00 36.04 2.29
402 403 1.486211 TTGGTTTGGCCCGAGAAAAA 58.514 45.000 0.00 0.00 36.04 1.94
403 404 1.710816 TGGTTTGGCCCGAGAAAAAT 58.289 45.000 0.00 0.00 36.04 1.82
404 405 1.616374 TGGTTTGGCCCGAGAAAAATC 59.384 47.619 0.00 0.00 36.04 2.17
405 406 1.616374 GGTTTGGCCCGAGAAAAATCA 59.384 47.619 0.00 0.00 0.00 2.57
406 407 2.352715 GGTTTGGCCCGAGAAAAATCAG 60.353 50.000 0.00 0.00 0.00 2.90
407 408 2.556622 GTTTGGCCCGAGAAAAATCAGA 59.443 45.455 0.00 0.00 0.00 3.27
408 409 1.821216 TGGCCCGAGAAAAATCAGAC 58.179 50.000 0.00 0.00 0.00 3.51
409 410 1.073125 TGGCCCGAGAAAAATCAGACA 59.927 47.619 0.00 0.00 0.00 3.41
410 411 1.468914 GGCCCGAGAAAAATCAGACAC 59.531 52.381 0.00 0.00 0.00 3.67
411 412 1.128692 GCCCGAGAAAAATCAGACACG 59.871 52.381 0.00 0.00 0.00 4.49
412 413 1.732259 CCCGAGAAAAATCAGACACGG 59.268 52.381 0.00 0.00 39.02 4.94
413 414 1.732259 CCGAGAAAAATCAGACACGGG 59.268 52.381 0.00 0.00 36.27 5.28
414 415 1.128692 CGAGAAAAATCAGACACGGGC 59.871 52.381 0.00 0.00 0.00 6.13
415 416 1.468914 GAGAAAAATCAGACACGGGCC 59.531 52.381 0.00 0.00 0.00 5.80
416 417 1.202879 AGAAAAATCAGACACGGGCCA 60.203 47.619 4.39 0.00 0.00 5.36
417 418 1.200020 GAAAAATCAGACACGGGCCAG 59.800 52.381 4.39 1.85 0.00 4.85
418 419 1.244019 AAAATCAGACACGGGCCAGC 61.244 55.000 4.39 0.00 0.00 4.85
419 420 2.129555 AAATCAGACACGGGCCAGCT 62.130 55.000 4.39 0.00 0.00 4.24
420 421 2.527951 AATCAGACACGGGCCAGCTC 62.528 60.000 4.39 0.00 0.00 4.09
423 424 4.803426 GACACGGGCCAGCTCGAG 62.803 72.222 20.41 13.81 43.62 4.04
426 427 4.753662 ACGGGCCAGCTCGAGGTA 62.754 66.667 20.41 0.00 43.62 3.08
427 428 4.208686 CGGGCCAGCTCGAGGTAC 62.209 72.222 18.15 12.31 43.62 3.34
429 430 2.359967 GGGCCAGCTCGAGGTACTT 61.360 63.158 18.15 0.00 41.55 2.24
430 431 1.597461 GGCCAGCTCGAGGTACTTT 59.403 57.895 18.15 0.00 41.55 2.66
431 432 0.036294 GGCCAGCTCGAGGTACTTTT 60.036 55.000 18.15 0.00 41.55 2.27
432 433 1.610886 GGCCAGCTCGAGGTACTTTTT 60.611 52.381 18.15 0.00 41.55 1.94
435 436 3.616802 GCCAGCTCGAGGTACTTTTTAGT 60.617 47.826 18.15 0.00 41.55 2.24
473 474 4.890088 ACATCACGTAAAACCTAGCAGAA 58.110 39.130 0.00 0.00 0.00 3.02
474 475 4.689345 ACATCACGTAAAACCTAGCAGAAC 59.311 41.667 0.00 0.00 0.00 3.01
475 476 3.656559 TCACGTAAAACCTAGCAGAACC 58.343 45.455 0.00 0.00 0.00 3.62
476 477 2.410730 CACGTAAAACCTAGCAGAACCG 59.589 50.000 0.00 0.00 0.00 4.44
477 478 1.997606 CGTAAAACCTAGCAGAACCGG 59.002 52.381 0.00 0.00 0.00 5.28
478 479 1.736126 GTAAAACCTAGCAGAACCGGC 59.264 52.381 0.00 0.00 0.00 6.13
507 510 3.250744 CTCGTCCAATCACACATACGTT 58.749 45.455 0.00 0.00 0.00 3.99
511 514 2.482336 TCCAATCACACATACGTTGCAC 59.518 45.455 0.00 0.00 0.00 4.57
625 635 3.319198 TCCGCTTGGAGGACACCC 61.319 66.667 0.00 0.00 36.65 4.61
702 712 1.533469 CCTCCTTCCTCCGTCGTTGT 61.533 60.000 0.00 0.00 0.00 3.32
718 728 0.327924 TTGTTGGCCGGATGATCAGT 59.672 50.000 5.05 0.00 0.00 3.41
720 730 0.107703 GTTGGCCGGATGATCAGTCA 60.108 55.000 5.05 0.00 39.04 3.41
828 856 2.553752 GTAACCTTCGCGACGTTTTTC 58.446 47.619 21.76 11.70 0.00 2.29
879 907 4.150454 CCCCGCTCCCTCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
891 919 2.180276 CTCTCCTCTTTCTTCCCGGAA 58.820 52.381 0.73 0.00 0.00 4.30
966 994 2.126071 CTCGTGCGGATCGGTGTT 60.126 61.111 1.93 0.00 0.00 3.32
1335 1385 2.670148 GCATTGGAGGGTCGGGTCT 61.670 63.158 0.00 0.00 0.00 3.85
1388 1450 8.978564 AATCACATCTCTCGTATAATGATCAC 57.021 34.615 0.00 0.00 0.00 3.06
1391 1453 4.066710 TCTCTCGTATAATGATCACGCG 57.933 45.455 3.53 3.53 35.70 6.01
1519 1593 7.226720 ACACACGACAATATCAGAAAAAGAGTT 59.773 33.333 0.00 0.00 0.00 3.01
1682 1762 4.836125 AGCAAATTTATATGGCTGACCG 57.164 40.909 0.00 0.00 39.70 4.79
2089 2234 3.119673 TGCTGACGTTTCAAAGCAAAGAA 60.120 39.130 7.93 0.00 31.73 2.52
2095 2240 7.452231 TGACGTTTCAAAGCAAAGAATTTTTC 58.548 30.769 0.00 0.00 35.03 2.29
2198 2387 9.799106 ATCGGACAATCCAGATATTTCTTTATT 57.201 29.630 0.00 0.00 35.91 1.40
2235 2424 4.449743 GTCGGTGCAGAGTGTTATGTTAAA 59.550 41.667 0.00 0.00 0.00 1.52
2284 2474 5.230182 TCAGTTTCCATCGATTCATATCCG 58.770 41.667 0.00 0.00 0.00 4.18
2320 2510 3.257127 CCGGTTCATACCACAAACCAATT 59.743 43.478 0.00 0.00 45.31 2.32
2358 2548 1.532523 TGAAGCGATTGCCATGAACA 58.467 45.000 0.00 0.00 44.31 3.18
2401 2591 2.345876 TCACGTAACATAGTCGACCGA 58.654 47.619 13.01 0.16 0.00 4.69
2410 2600 0.461516 TAGTCGACCGAGCGAGTGAT 60.462 55.000 13.01 0.00 43.22 3.06
2417 2607 1.338337 ACCGAGCGAGTGATTAGATGG 59.662 52.381 0.00 0.00 0.00 3.51
2543 2733 7.601508 GGCACTAGCACTAGTAAAAAGAGTTAA 59.398 37.037 9.92 0.00 43.98 2.01
2544 2734 8.648968 GCACTAGCACTAGTAAAAAGAGTTAAG 58.351 37.037 9.92 0.00 43.98 1.85
2561 2751 6.038825 AGAGTTAAGAGTGTATGGATGAGTCG 59.961 42.308 0.00 0.00 0.00 4.18
2565 2755 0.464036 GTGTATGGATGAGTCGGGCA 59.536 55.000 0.00 0.00 0.00 5.36
2697 2887 7.730364 TCCAAGACTCTTAGTTTTGTTGATC 57.270 36.000 8.85 0.00 38.29 2.92
2741 2931 4.037446 GTCTCACTGATCCTGAGGATGTAC 59.963 50.000 20.60 5.14 43.27 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.754667 TGAGGCTGCAGCTGCGAG 62.755 66.667 35.82 27.93 45.83 5.03
6 7 3.054503 GTGGTGAGGCTGCAGCTG 61.055 66.667 35.82 10.11 41.70 4.24
7 8 4.341783 GGTGGTGAGGCTGCAGCT 62.342 66.667 35.82 22.72 41.70 4.24
11 12 4.101448 ATCCGGTGGTGAGGCTGC 62.101 66.667 0.00 0.00 0.00 5.25
12 13 2.187946 GATCCGGTGGTGAGGCTG 59.812 66.667 0.00 0.00 0.00 4.85
13 14 2.039624 AGATCCGGTGGTGAGGCT 59.960 61.111 0.00 0.00 0.00 4.58
14 15 2.187946 CAGATCCGGTGGTGAGGC 59.812 66.667 0.00 0.00 0.00 4.70
15 16 2.187946 GCAGATCCGGTGGTGAGG 59.812 66.667 0.00 0.00 0.00 3.86
16 17 2.202797 CGCAGATCCGGTGGTGAG 60.203 66.667 0.00 0.00 0.00 3.51
17 18 4.451150 GCGCAGATCCGGTGGTGA 62.451 66.667 0.30 0.00 0.00 4.02
18 19 4.457496 AGCGCAGATCCGGTGGTG 62.457 66.667 11.47 0.00 37.57 4.17
22 23 4.521062 GCTCAGCGCAGATCCGGT 62.521 66.667 11.47 0.00 39.84 5.28
24 25 3.804153 ATGGCTCAGCGCAGATCCG 62.804 63.158 16.51 0.96 41.67 4.18
25 26 2.110627 ATGGCTCAGCGCAGATCC 59.889 61.111 15.04 15.04 41.67 3.36
26 27 2.252346 CCATGGCTCAGCGCAGATC 61.252 63.158 11.47 1.69 41.67 2.75
27 28 2.203167 CCATGGCTCAGCGCAGAT 60.203 61.111 11.47 0.00 41.67 2.90
28 29 3.709633 ACCATGGCTCAGCGCAGA 61.710 61.111 13.04 6.15 41.67 4.26
29 30 3.506096 CACCATGGCTCAGCGCAG 61.506 66.667 13.04 0.00 41.67 5.18
39 40 2.287457 CTGCAATTCCGCCACCATGG 62.287 60.000 11.19 11.19 41.55 3.66
40 41 1.140161 CTGCAATTCCGCCACCATG 59.860 57.895 0.00 0.00 0.00 3.66
41 42 2.053865 CCTGCAATTCCGCCACCAT 61.054 57.895 0.00 0.00 0.00 3.55
42 43 2.676121 CCTGCAATTCCGCCACCA 60.676 61.111 0.00 0.00 0.00 4.17
43 44 2.361104 TCCTGCAATTCCGCCACC 60.361 61.111 0.00 0.00 0.00 4.61
44 45 2.700773 GGTCCTGCAATTCCGCCAC 61.701 63.158 0.00 0.00 0.00 5.01
45 46 2.361104 GGTCCTGCAATTCCGCCA 60.361 61.111 0.00 0.00 0.00 5.69
46 47 2.044946 AGGTCCTGCAATTCCGCC 60.045 61.111 0.00 0.00 0.00 6.13
47 48 0.960364 TTCAGGTCCTGCAATTCCGC 60.960 55.000 14.64 0.00 0.00 5.54
48 49 0.804989 GTTCAGGTCCTGCAATTCCG 59.195 55.000 14.64 0.00 0.00 4.30
49 50 0.804989 CGTTCAGGTCCTGCAATTCC 59.195 55.000 14.64 0.00 0.00 3.01
50 51 0.804989 CCGTTCAGGTCCTGCAATTC 59.195 55.000 14.64 1.92 34.51 2.17
51 52 0.400213 TCCGTTCAGGTCCTGCAATT 59.600 50.000 14.64 0.00 41.99 2.32
52 53 0.036010 CTCCGTTCAGGTCCTGCAAT 60.036 55.000 14.64 0.00 41.99 3.56
53 54 1.371183 CTCCGTTCAGGTCCTGCAA 59.629 57.895 14.64 6.82 41.99 4.08
54 55 2.583441 CCTCCGTTCAGGTCCTGCA 61.583 63.158 14.64 0.00 41.99 4.41
55 56 2.266055 CCTCCGTTCAGGTCCTGC 59.734 66.667 14.64 0.00 41.99 4.85
56 57 1.608717 CTCCCTCCGTTCAGGTCCTG 61.609 65.000 13.21 13.21 41.99 3.86
57 58 1.305381 CTCCCTCCGTTCAGGTCCT 60.305 63.158 0.00 0.00 41.99 3.85
58 59 3.020237 GCTCCCTCCGTTCAGGTCC 62.020 68.421 0.00 0.00 41.99 4.46
59 60 2.579738 GCTCCCTCCGTTCAGGTC 59.420 66.667 0.00 0.00 41.99 3.85
60 61 3.003763 GGCTCCCTCCGTTCAGGT 61.004 66.667 0.00 0.00 41.99 4.00
61 62 4.148825 CGGCTCCCTCCGTTCAGG 62.149 72.222 0.00 0.00 44.18 3.86
92 93 3.361977 AAACATCGTGGCCGCACC 61.362 61.111 18.18 0.00 39.84 5.01
93 94 2.126888 CAAACATCGTGGCCGCAC 60.127 61.111 18.18 0.00 0.00 5.34
94 95 4.036804 GCAAACATCGTGGCCGCA 62.037 61.111 18.18 3.85 0.00 5.69
95 96 3.951655 CTGCAAACATCGTGGCCGC 62.952 63.158 6.11 6.11 0.00 6.53
96 97 2.176546 CTGCAAACATCGTGGCCG 59.823 61.111 0.00 0.00 0.00 6.13
97 98 2.268076 ACCTGCAAACATCGTGGCC 61.268 57.895 0.00 0.00 0.00 5.36
98 99 1.081242 CACCTGCAAACATCGTGGC 60.081 57.895 0.00 0.00 0.00 5.01
99 100 1.580942 CCACCTGCAAACATCGTGG 59.419 57.895 0.00 0.00 38.83 4.94
100 101 1.580942 CCCACCTGCAAACATCGTG 59.419 57.895 0.00 0.00 0.00 4.35
101 102 2.268076 GCCCACCTGCAAACATCGT 61.268 57.895 0.00 0.00 0.00 3.73
102 103 2.267351 TGCCCACCTGCAAACATCG 61.267 57.895 0.00 0.00 38.56 3.84
103 104 3.776158 TGCCCACCTGCAAACATC 58.224 55.556 0.00 0.00 38.56 3.06
109 110 3.506743 TTCCCTTGCCCACCTGCA 61.507 61.111 0.00 0.00 40.07 4.41
110 111 2.991540 GTTCCCTTGCCCACCTGC 60.992 66.667 0.00 0.00 0.00 4.85
111 112 2.672996 CGTTCCCTTGCCCACCTG 60.673 66.667 0.00 0.00 0.00 4.00
112 113 3.966543 CCGTTCCCTTGCCCACCT 61.967 66.667 0.00 0.00 0.00 4.00
119 120 2.260088 TTATCCCGGCCGTTCCCTTG 62.260 60.000 26.12 6.34 0.00 3.61
120 121 1.564483 TTTATCCCGGCCGTTCCCTT 61.564 55.000 26.12 4.95 0.00 3.95
121 122 1.979619 CTTTATCCCGGCCGTTCCCT 61.980 60.000 26.12 6.28 0.00 4.20
122 123 1.525306 CTTTATCCCGGCCGTTCCC 60.525 63.158 26.12 0.00 0.00 3.97
123 124 0.107557 TTCTTTATCCCGGCCGTTCC 60.108 55.000 26.12 0.00 0.00 3.62
124 125 1.012086 GTTCTTTATCCCGGCCGTTC 58.988 55.000 26.12 0.00 0.00 3.95
125 126 0.325602 TGTTCTTTATCCCGGCCGTT 59.674 50.000 26.12 11.15 0.00 4.44
126 127 0.325602 TTGTTCTTTATCCCGGCCGT 59.674 50.000 26.12 8.42 0.00 5.68
127 128 1.014352 CTTGTTCTTTATCCCGGCCG 58.986 55.000 21.04 21.04 0.00 6.13
128 129 2.014857 GACTTGTTCTTTATCCCGGCC 58.985 52.381 0.00 0.00 0.00 6.13
129 130 2.706890 TGACTTGTTCTTTATCCCGGC 58.293 47.619 0.00 0.00 0.00 6.13
130 131 4.941263 TGAATGACTTGTTCTTTATCCCGG 59.059 41.667 0.00 0.00 0.00 5.73
131 132 5.065218 CCTGAATGACTTGTTCTTTATCCCG 59.935 44.000 0.00 0.00 0.00 5.14
132 133 5.946377 ACCTGAATGACTTGTTCTTTATCCC 59.054 40.000 0.00 0.00 0.00 3.85
133 134 7.281100 CCTACCTGAATGACTTGTTCTTTATCC 59.719 40.741 0.00 0.00 0.00 2.59
134 135 8.041323 TCCTACCTGAATGACTTGTTCTTTATC 58.959 37.037 0.00 0.00 0.00 1.75
135 136 7.918076 TCCTACCTGAATGACTTGTTCTTTAT 58.082 34.615 0.00 0.00 0.00 1.40
136 137 7.311092 TCCTACCTGAATGACTTGTTCTTTA 57.689 36.000 0.00 0.00 0.00 1.85
137 138 6.187727 TCCTACCTGAATGACTTGTTCTTT 57.812 37.500 0.00 0.00 0.00 2.52
138 139 5.825593 TCCTACCTGAATGACTTGTTCTT 57.174 39.130 0.00 0.00 0.00 2.52
139 140 7.365117 CCTTATCCTACCTGAATGACTTGTTCT 60.365 40.741 0.00 0.00 0.00 3.01
140 141 6.763610 CCTTATCCTACCTGAATGACTTGTTC 59.236 42.308 0.00 0.00 0.00 3.18
141 142 6.653989 CCTTATCCTACCTGAATGACTTGTT 58.346 40.000 0.00 0.00 0.00 2.83
142 143 5.396884 GCCTTATCCTACCTGAATGACTTGT 60.397 44.000 0.00 0.00 0.00 3.16
143 144 5.059833 GCCTTATCCTACCTGAATGACTTG 58.940 45.833 0.00 0.00 0.00 3.16
144 145 4.721776 TGCCTTATCCTACCTGAATGACTT 59.278 41.667 0.00 0.00 0.00 3.01
145 146 4.298626 TGCCTTATCCTACCTGAATGACT 58.701 43.478 0.00 0.00 0.00 3.41
146 147 4.345257 TCTGCCTTATCCTACCTGAATGAC 59.655 45.833 0.00 0.00 0.00 3.06
147 148 4.556697 TCTGCCTTATCCTACCTGAATGA 58.443 43.478 0.00 0.00 0.00 2.57
148 149 4.963318 TCTGCCTTATCCTACCTGAATG 57.037 45.455 0.00 0.00 0.00 2.67
149 150 5.723887 CCTATCTGCCTTATCCTACCTGAAT 59.276 44.000 0.00 0.00 0.00 2.57
150 151 5.087323 CCTATCTGCCTTATCCTACCTGAA 58.913 45.833 0.00 0.00 0.00 3.02
151 152 4.357097 TCCTATCTGCCTTATCCTACCTGA 59.643 45.833 0.00 0.00 0.00 3.86
152 153 4.678256 TCCTATCTGCCTTATCCTACCTG 58.322 47.826 0.00 0.00 0.00 4.00
153 154 5.355670 TTCCTATCTGCCTTATCCTACCT 57.644 43.478 0.00 0.00 0.00 3.08
154 155 6.628644 ATTTCCTATCTGCCTTATCCTACC 57.371 41.667 0.00 0.00 0.00 3.18
155 156 7.680730 TCAATTTCCTATCTGCCTTATCCTAC 58.319 38.462 0.00 0.00 0.00 3.18
156 157 7.734865 TCTCAATTTCCTATCTGCCTTATCCTA 59.265 37.037 0.00 0.00 0.00 2.94
157 158 6.560304 TCTCAATTTCCTATCTGCCTTATCCT 59.440 38.462 0.00 0.00 0.00 3.24
158 159 6.773638 TCTCAATTTCCTATCTGCCTTATCC 58.226 40.000 0.00 0.00 0.00 2.59
159 160 6.878389 CCTCTCAATTTCCTATCTGCCTTATC 59.122 42.308 0.00 0.00 0.00 1.75
160 161 6.560304 TCCTCTCAATTTCCTATCTGCCTTAT 59.440 38.462 0.00 0.00 0.00 1.73
161 162 5.905331 TCCTCTCAATTTCCTATCTGCCTTA 59.095 40.000 0.00 0.00 0.00 2.69
162 163 4.723789 TCCTCTCAATTTCCTATCTGCCTT 59.276 41.667 0.00 0.00 0.00 4.35
163 164 4.302067 TCCTCTCAATTTCCTATCTGCCT 58.698 43.478 0.00 0.00 0.00 4.75
164 165 4.640364 CTCCTCTCAATTTCCTATCTGCC 58.360 47.826 0.00 0.00 0.00 4.85
165 166 4.064388 GCTCCTCTCAATTTCCTATCTGC 58.936 47.826 0.00 0.00 0.00 4.26
166 167 5.549742 AGCTCCTCTCAATTTCCTATCTG 57.450 43.478 0.00 0.00 0.00 2.90
167 168 5.779771 CCTAGCTCCTCTCAATTTCCTATCT 59.220 44.000 0.00 0.00 0.00 1.98
168 169 5.046663 CCCTAGCTCCTCTCAATTTCCTATC 60.047 48.000 0.00 0.00 0.00 2.08
169 170 4.843516 CCCTAGCTCCTCTCAATTTCCTAT 59.156 45.833 0.00 0.00 0.00 2.57
170 171 4.227197 CCCTAGCTCCTCTCAATTTCCTA 58.773 47.826 0.00 0.00 0.00 2.94
171 172 3.044894 CCCTAGCTCCTCTCAATTTCCT 58.955 50.000 0.00 0.00 0.00 3.36
172 173 2.105649 CCCCTAGCTCCTCTCAATTTCC 59.894 54.545 0.00 0.00 0.00 3.13
173 174 2.486370 GCCCCTAGCTCCTCTCAATTTC 60.486 54.545 0.00 0.00 38.99 2.17
174 175 1.492599 GCCCCTAGCTCCTCTCAATTT 59.507 52.381 0.00 0.00 38.99 1.82
175 176 1.135960 GCCCCTAGCTCCTCTCAATT 58.864 55.000 0.00 0.00 38.99 2.32
176 177 0.030705 TGCCCCTAGCTCCTCTCAAT 60.031 55.000 0.00 0.00 44.23 2.57
177 178 0.978146 GTGCCCCTAGCTCCTCTCAA 60.978 60.000 0.00 0.00 44.23 3.02
178 179 1.381872 GTGCCCCTAGCTCCTCTCA 60.382 63.158 0.00 0.00 44.23 3.27
179 180 3.544772 GTGCCCCTAGCTCCTCTC 58.455 66.667 0.00 0.00 44.23 3.20
184 185 3.372554 GACGTGGTGCCCCTAGCTC 62.373 68.421 0.00 0.00 44.23 4.09
185 186 3.391382 GACGTGGTGCCCCTAGCT 61.391 66.667 0.00 0.00 44.23 3.32
186 187 3.702048 TGACGTGGTGCCCCTAGC 61.702 66.667 0.00 0.00 44.14 3.42
187 188 2.264794 GTGACGTGGTGCCCCTAG 59.735 66.667 0.00 0.00 0.00 3.02
188 189 3.687102 CGTGACGTGGTGCCCCTA 61.687 66.667 0.00 0.00 0.00 3.53
200 201 0.179145 CTATCCACCGTCCACGTGAC 60.179 60.000 19.30 12.26 40.81 3.67
201 202 1.317431 CCTATCCACCGTCCACGTGA 61.317 60.000 19.30 0.00 37.74 4.35
202 203 1.141019 CCTATCCACCGTCCACGTG 59.859 63.158 9.08 9.08 37.74 4.49
203 204 1.000521 TCCTATCCACCGTCCACGT 60.001 57.895 0.00 0.00 37.74 4.49
204 205 1.734137 CTCCTATCCACCGTCCACG 59.266 63.158 0.00 0.00 39.44 4.94
205 206 1.442148 GCTCCTATCCACCGTCCAC 59.558 63.158 0.00 0.00 0.00 4.02
206 207 1.760875 GGCTCCTATCCACCGTCCA 60.761 63.158 0.00 0.00 0.00 4.02
207 208 0.178970 TAGGCTCCTATCCACCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
208 209 1.202903 TCTAGGCTCCTATCCACCGTC 60.203 57.143 0.00 0.00 0.00 4.79
209 210 0.851469 TCTAGGCTCCTATCCACCGT 59.149 55.000 0.00 0.00 0.00 4.83
210 211 2.223803 ATCTAGGCTCCTATCCACCG 57.776 55.000 0.00 0.00 0.00 4.94
211 212 4.873010 TGATATCTAGGCTCCTATCCACC 58.127 47.826 3.98 0.00 0.00 4.61
212 213 4.340950 GCTGATATCTAGGCTCCTATCCAC 59.659 50.000 3.98 0.00 0.00 4.02
213 214 4.541705 GCTGATATCTAGGCTCCTATCCA 58.458 47.826 3.98 0.00 0.00 3.41
214 215 3.895041 GGCTGATATCTAGGCTCCTATCC 59.105 52.174 16.30 1.09 37.70 2.59
215 216 3.568007 CGGCTGATATCTAGGCTCCTATC 59.432 52.174 19.18 0.00 38.46 2.08
216 217 3.561143 CGGCTGATATCTAGGCTCCTAT 58.439 50.000 19.18 0.00 38.46 2.57
217 218 2.357257 CCGGCTGATATCTAGGCTCCTA 60.357 54.545 19.18 0.00 38.46 2.94
218 219 1.618345 CCGGCTGATATCTAGGCTCCT 60.618 57.143 19.18 0.00 38.46 3.69
219 220 0.820871 CCGGCTGATATCTAGGCTCC 59.179 60.000 19.18 6.99 38.46 4.70
220 221 0.820871 CCCGGCTGATATCTAGGCTC 59.179 60.000 19.18 9.11 38.46 4.70
221 222 0.115349 ACCCGGCTGATATCTAGGCT 59.885 55.000 19.18 0.00 38.46 4.58
222 223 0.247736 CACCCGGCTGATATCTAGGC 59.752 60.000 14.60 14.60 37.37 3.93
223 224 1.924731 TCACCCGGCTGATATCTAGG 58.075 55.000 3.98 2.31 0.00 3.02
224 225 4.021104 TGAAATCACCCGGCTGATATCTAG 60.021 45.833 12.67 1.40 30.27 2.43
225 226 3.901222 TGAAATCACCCGGCTGATATCTA 59.099 43.478 12.67 0.00 30.27 1.98
226 227 2.705658 TGAAATCACCCGGCTGATATCT 59.294 45.455 12.67 1.13 30.27 1.98
227 228 3.070018 CTGAAATCACCCGGCTGATATC 58.930 50.000 12.67 0.00 30.27 1.63
228 229 2.439507 ACTGAAATCACCCGGCTGATAT 59.560 45.455 12.67 1.32 30.27 1.63
229 230 1.837439 ACTGAAATCACCCGGCTGATA 59.163 47.619 12.67 0.00 30.27 2.15
230 231 0.620556 ACTGAAATCACCCGGCTGAT 59.379 50.000 6.42 6.42 31.84 2.90
231 232 0.036388 GACTGAAATCACCCGGCTGA 60.036 55.000 0.99 0.99 0.00 4.26
232 233 0.321564 TGACTGAAATCACCCGGCTG 60.322 55.000 0.00 0.00 0.00 4.85
233 234 0.620556 ATGACTGAAATCACCCGGCT 59.379 50.000 0.00 0.00 0.00 5.52
234 235 1.463674 AATGACTGAAATCACCCGGC 58.536 50.000 0.00 0.00 0.00 6.13
235 236 2.423538 GGAAATGACTGAAATCACCCGG 59.576 50.000 0.00 0.00 0.00 5.73
236 237 2.423538 GGGAAATGACTGAAATCACCCG 59.576 50.000 0.00 0.00 0.00 5.28
237 238 3.430453 TGGGAAATGACTGAAATCACCC 58.570 45.455 0.00 0.00 34.43 4.61
238 239 5.185635 TCAATGGGAAATGACTGAAATCACC 59.814 40.000 0.00 0.00 0.00 4.02
239 240 6.271488 TCAATGGGAAATGACTGAAATCAC 57.729 37.500 0.00 0.00 0.00 3.06
240 241 7.484993 AATCAATGGGAAATGACTGAAATCA 57.515 32.000 0.00 0.00 0.00 2.57
242 243 9.826574 CATTAATCAATGGGAAATGACTGAAAT 57.173 29.630 0.00 0.00 38.31 2.17
243 244 9.033711 TCATTAATCAATGGGAAATGACTGAAA 57.966 29.630 0.00 0.00 41.66 2.69
244 245 8.469200 GTCATTAATCAATGGGAAATGACTGAA 58.531 33.333 18.87 0.00 46.57 3.02
245 246 7.999679 GTCATTAATCAATGGGAAATGACTGA 58.000 34.615 18.87 0.00 46.57 3.41
249 250 7.124721 TCCAGTCATTAATCAATGGGAAATGA 58.875 34.615 5.96 0.00 41.66 2.57
250 251 7.286087 TCTCCAGTCATTAATCAATGGGAAATG 59.714 37.037 5.96 0.00 41.66 2.32
251 252 7.356680 TCTCCAGTCATTAATCAATGGGAAAT 58.643 34.615 5.96 0.00 41.66 2.17
252 253 6.730447 TCTCCAGTCATTAATCAATGGGAAA 58.270 36.000 5.96 0.00 41.66 3.13
253 254 6.325993 TCTCCAGTCATTAATCAATGGGAA 57.674 37.500 5.96 0.00 41.66 3.97
254 255 5.974156 TCTCCAGTCATTAATCAATGGGA 57.026 39.130 5.96 0.03 41.66 4.37
255 256 7.095060 CGTAATCTCCAGTCATTAATCAATGGG 60.095 40.741 5.96 0.00 41.66 4.00
256 257 7.657354 TCGTAATCTCCAGTCATTAATCAATGG 59.343 37.037 0.00 0.00 41.66 3.16
257 258 8.593492 TCGTAATCTCCAGTCATTAATCAATG 57.407 34.615 0.00 0.00 42.55 2.82
258 259 8.642432 TCTCGTAATCTCCAGTCATTAATCAAT 58.358 33.333 0.00 0.00 0.00 2.57
259 260 8.007405 TCTCGTAATCTCCAGTCATTAATCAA 57.993 34.615 0.00 0.00 0.00 2.57
260 261 7.582667 TCTCGTAATCTCCAGTCATTAATCA 57.417 36.000 0.00 0.00 0.00 2.57
261 262 8.756864 GTTTCTCGTAATCTCCAGTCATTAATC 58.243 37.037 0.00 0.00 0.00 1.75
262 263 8.478877 AGTTTCTCGTAATCTCCAGTCATTAAT 58.521 33.333 0.00 0.00 0.00 1.40
263 264 7.837863 AGTTTCTCGTAATCTCCAGTCATTAA 58.162 34.615 0.00 0.00 0.00 1.40
264 265 7.406031 AGTTTCTCGTAATCTCCAGTCATTA 57.594 36.000 0.00 0.00 0.00 1.90
265 266 6.287589 AGTTTCTCGTAATCTCCAGTCATT 57.712 37.500 0.00 0.00 0.00 2.57
266 267 5.923733 AGTTTCTCGTAATCTCCAGTCAT 57.076 39.130 0.00 0.00 0.00 3.06
267 268 5.723672 AAGTTTCTCGTAATCTCCAGTCA 57.276 39.130 0.00 0.00 0.00 3.41
268 269 8.705048 AATTAAGTTTCTCGTAATCTCCAGTC 57.295 34.615 0.00 0.00 31.52 3.51
279 280 8.969267 CGAGCTCAATATAATTAAGTTTCTCGT 58.031 33.333 15.40 0.00 34.41 4.18
280 281 9.181805 TCGAGCTCAATATAATTAAGTTTCTCG 57.818 33.333 15.40 0.00 38.63 4.04
296 297 9.606631 AAAACTAAAGAATATCTCGAGCTCAAT 57.393 29.630 15.40 6.51 0.00 2.57
297 298 9.436957 AAAAACTAAAGAATATCTCGAGCTCAA 57.563 29.630 15.40 0.00 0.00 3.02
330 331 8.766151 GCCTGCTAACTAAAGAATATCTGTTAC 58.234 37.037 0.00 0.00 0.00 2.50
331 332 8.705594 AGCCTGCTAACTAAAGAATATCTGTTA 58.294 33.333 0.00 0.00 0.00 2.41
332 333 7.569240 AGCCTGCTAACTAAAGAATATCTGTT 58.431 34.615 0.00 0.00 0.00 3.16
333 334 7.130681 AGCCTGCTAACTAAAGAATATCTGT 57.869 36.000 0.00 0.00 0.00 3.41
334 335 8.341173 CAAAGCCTGCTAACTAAAGAATATCTG 58.659 37.037 0.00 0.00 0.00 2.90
335 336 8.049721 ACAAAGCCTGCTAACTAAAGAATATCT 58.950 33.333 0.00 0.00 0.00 1.98
336 337 8.125448 CACAAAGCCTGCTAACTAAAGAATATC 58.875 37.037 0.00 0.00 0.00 1.63
337 338 7.611855 ACACAAAGCCTGCTAACTAAAGAATAT 59.388 33.333 0.00 0.00 0.00 1.28
338 339 6.940298 ACACAAAGCCTGCTAACTAAAGAATA 59.060 34.615 0.00 0.00 0.00 1.75
339 340 5.770162 ACACAAAGCCTGCTAACTAAAGAAT 59.230 36.000 0.00 0.00 0.00 2.40
340 341 5.130350 ACACAAAGCCTGCTAACTAAAGAA 58.870 37.500 0.00 0.00 0.00 2.52
341 342 4.714632 ACACAAAGCCTGCTAACTAAAGA 58.285 39.130 0.00 0.00 0.00 2.52
342 343 5.390991 GCTACACAAAGCCTGCTAACTAAAG 60.391 44.000 0.00 0.00 36.45 1.85
343 344 4.454504 GCTACACAAAGCCTGCTAACTAAA 59.545 41.667 0.00 0.00 36.45 1.85
344 345 4.000988 GCTACACAAAGCCTGCTAACTAA 58.999 43.478 0.00 0.00 36.45 2.24
345 346 3.596214 GCTACACAAAGCCTGCTAACTA 58.404 45.455 0.00 0.00 36.45 2.24
346 347 2.427506 GCTACACAAAGCCTGCTAACT 58.572 47.619 0.00 0.00 36.45 2.24
347 348 2.902065 GCTACACAAAGCCTGCTAAC 57.098 50.000 0.00 0.00 36.45 2.34
355 356 1.512694 GCCCATGGCTACACAAAGC 59.487 57.895 6.09 0.00 46.69 3.51
366 367 0.391927 CAATTGCAAGTGGCCCATGG 60.392 55.000 18.84 4.14 43.89 3.66
367 368 0.391927 CCAATTGCAAGTGGCCCATG 60.392 55.000 30.74 8.48 43.89 3.66
368 369 1.984817 CCAATTGCAAGTGGCCCAT 59.015 52.632 30.74 0.00 43.89 4.00
369 370 3.469247 CCAATTGCAAGTGGCCCA 58.531 55.556 30.74 0.00 43.89 5.36
374 375 1.228533 GGCCAAACCAATTGCAAGTG 58.771 50.000 19.59 19.59 37.73 3.16
375 376 0.108396 GGGCCAAACCAATTGCAAGT 59.892 50.000 4.39 0.00 42.05 3.16
376 377 0.950071 CGGGCCAAACCAATTGCAAG 60.950 55.000 4.39 0.00 42.05 4.01
377 378 1.070445 CGGGCCAAACCAATTGCAA 59.930 52.632 4.39 0.00 42.05 4.08
378 379 1.814772 CTCGGGCCAAACCAATTGCA 61.815 55.000 4.39 0.00 42.05 4.08
379 380 1.079888 CTCGGGCCAAACCAATTGC 60.080 57.895 4.39 0.00 42.05 3.56
380 381 0.965439 TTCTCGGGCCAAACCAATTG 59.035 50.000 4.39 0.00 42.05 2.32
381 382 1.710816 TTTCTCGGGCCAAACCAATT 58.289 45.000 4.39 0.00 42.05 2.32
382 383 1.710816 TTTTCTCGGGCCAAACCAAT 58.289 45.000 4.39 0.00 42.05 3.16
383 384 1.486211 TTTTTCTCGGGCCAAACCAA 58.514 45.000 4.39 0.00 42.05 3.67
384 385 1.616374 GATTTTTCTCGGGCCAAACCA 59.384 47.619 4.39 0.00 42.05 3.67
385 386 1.616374 TGATTTTTCTCGGGCCAAACC 59.384 47.619 4.39 0.00 37.93 3.27
386 387 2.556622 TCTGATTTTTCTCGGGCCAAAC 59.443 45.455 4.39 0.00 0.00 2.93
387 388 2.556622 GTCTGATTTTTCTCGGGCCAAA 59.443 45.455 4.39 0.00 0.00 3.28
388 389 2.159382 GTCTGATTTTTCTCGGGCCAA 58.841 47.619 4.39 0.00 0.00 4.52
389 390 1.073125 TGTCTGATTTTTCTCGGGCCA 59.927 47.619 4.39 0.00 0.00 5.36
390 391 1.468914 GTGTCTGATTTTTCTCGGGCC 59.531 52.381 0.00 0.00 0.00 5.80
391 392 1.128692 CGTGTCTGATTTTTCTCGGGC 59.871 52.381 0.00 0.00 0.00 6.13
392 393 1.732259 CCGTGTCTGATTTTTCTCGGG 59.268 52.381 0.00 0.00 34.66 5.14
393 394 1.732259 CCCGTGTCTGATTTTTCTCGG 59.268 52.381 0.00 0.00 36.92 4.63
394 395 1.128692 GCCCGTGTCTGATTTTTCTCG 59.871 52.381 0.00 0.00 0.00 4.04
395 396 1.468914 GGCCCGTGTCTGATTTTTCTC 59.531 52.381 0.00 0.00 0.00 2.87
396 397 1.202879 TGGCCCGTGTCTGATTTTTCT 60.203 47.619 0.00 0.00 0.00 2.52
397 398 1.200020 CTGGCCCGTGTCTGATTTTTC 59.800 52.381 0.00 0.00 0.00 2.29
398 399 1.247567 CTGGCCCGTGTCTGATTTTT 58.752 50.000 0.00 0.00 0.00 1.94
399 400 1.244019 GCTGGCCCGTGTCTGATTTT 61.244 55.000 0.00 0.00 0.00 1.82
400 401 1.675641 GCTGGCCCGTGTCTGATTT 60.676 57.895 0.00 0.00 0.00 2.17
401 402 2.045926 GCTGGCCCGTGTCTGATT 60.046 61.111 0.00 0.00 0.00 2.57
402 403 3.005539 AGCTGGCCCGTGTCTGAT 61.006 61.111 0.00 0.00 0.00 2.90
403 404 3.695606 GAGCTGGCCCGTGTCTGA 61.696 66.667 0.00 0.00 0.00 3.27
406 407 4.803426 CTCGAGCTGGCCCGTGTC 62.803 72.222 0.00 0.00 0.00 3.67
409 410 4.753662 TACCTCGAGCTGGCCCGT 62.754 66.667 6.99 0.00 0.00 5.28
410 411 4.208686 GTACCTCGAGCTGGCCCG 62.209 72.222 6.99 0.00 0.00 6.13
411 412 1.900545 AAAGTACCTCGAGCTGGCCC 61.901 60.000 6.99 0.00 0.00 5.80
412 413 0.036294 AAAAGTACCTCGAGCTGGCC 60.036 55.000 6.99 0.00 0.00 5.36
413 414 1.809684 AAAAAGTACCTCGAGCTGGC 58.190 50.000 6.99 0.00 0.00 4.85
414 415 4.189639 ACTAAAAAGTACCTCGAGCTGG 57.810 45.455 6.99 0.00 0.00 4.85
511 514 0.394216 TGGGATCGATTGGGTGCAAG 60.394 55.000 0.00 0.00 0.00 4.01
702 712 0.178767 CTGACTGATCATCCGGCCAA 59.821 55.000 2.24 0.00 33.22 4.52
891 919 1.094785 CGAAAAGGCATGGATCGGTT 58.905 50.000 0.00 0.00 0.00 4.44
966 994 1.069978 TGATAGCCGAAATCGCCATGA 59.930 47.619 0.00 0.00 38.18 3.07
1335 1385 1.361271 GTCCACGTCGACTGACCAA 59.639 57.895 14.70 0.00 42.37 3.67
1388 1450 0.042188 CATTTGGGAATACGAGCGCG 60.042 55.000 8.75 8.75 44.79 6.86
1391 1453 3.244579 GTCGTACATTTGGGAATACGAGC 59.755 47.826 5.65 0.00 37.08 5.03
1402 1470 1.390123 CTGTGGCTCGTCGTACATTTG 59.610 52.381 0.00 0.00 0.00 2.32
1682 1762 1.480137 CCTCCATCACTCCTGTCTCAC 59.520 57.143 0.00 0.00 0.00 3.51
1973 2118 2.288213 GCCAGATTCGATCCACGTGATA 60.288 50.000 19.30 4.90 43.13 2.15
1984 2129 1.827344 AGACACATGAGCCAGATTCGA 59.173 47.619 0.00 0.00 0.00 3.71
2069 2214 6.573617 AAATTCTTTGCTTTGAAACGTCAG 57.426 33.333 0.00 0.00 34.49 3.51
2198 2387 5.029807 TGCACCGACATATATTTTCCTCA 57.970 39.130 0.00 0.00 0.00 3.86
2320 2510 5.163764 GCTTCATCCATTGTCATCGTTACAA 60.164 40.000 0.00 0.00 40.85 2.41
2358 2548 3.141398 ACAATGTGAGTCTCGTGCAATT 58.859 40.909 0.00 0.00 0.00 2.32
2387 2577 0.377554 CTCGCTCGGTCGACTATGTT 59.622 55.000 16.46 0.00 34.46 2.71
2401 2591 0.394565 GGGCCATCTAATCACTCGCT 59.605 55.000 4.39 0.00 0.00 4.93
2410 2600 2.437651 TGATCGAACATGGGCCATCTAA 59.562 45.455 18.16 0.80 0.00 2.10
2417 2607 2.983402 CATGATGATCGAACATGGGC 57.017 50.000 13.41 0.00 38.07 5.36
2543 2733 2.311463 CCCGACTCATCCATACACTCT 58.689 52.381 0.00 0.00 0.00 3.24
2544 2734 1.269831 GCCCGACTCATCCATACACTC 60.270 57.143 0.00 0.00 0.00 3.51
2561 2751 0.243636 CAAGGGACGAACAAATGCCC 59.756 55.000 0.00 0.00 39.12 5.36
2565 2755 1.202722 ACGACCAAGGGACGAACAAAT 60.203 47.619 13.57 0.00 42.79 2.32
2601 2791 2.044555 GGGCCGGCAAGTAAACTCC 61.045 63.158 30.85 13.16 0.00 3.85
2706 2896 9.258826 CAGGATCAGTGAGACTTAAAATATGAG 57.741 37.037 0.00 0.00 0.00 2.90
2741 2931 4.026640 CGAGTTCAAAAGCCACAATTGTTG 60.027 41.667 8.77 6.85 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.