Multiple sequence alignment - TraesCS7D01G496700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G496700 chr7D 100.000 3323 0 0 1 3323 603582999 603586321 0.000000e+00 6137.0
1 TraesCS7D01G496700 chr7D 85.215 1001 131 14 1028 2020 509631723 509630732 0.000000e+00 1013.0
2 TraesCS7D01G496700 chr7D 96.481 341 3 1 2992 3323 480942510 480942170 3.750000e-154 555.0
3 TraesCS7D01G496700 chr7D 96.188 341 4 1 2992 3323 230080136 230079796 1.740000e-152 549.0
4 TraesCS7D01G496700 chr7D 95.601 341 5 2 2992 3323 140219558 140219897 3.770000e-149 538.0
5 TraesCS7D01G496700 chr7D 92.090 354 14 5 2981 3323 570295513 570295163 1.390000e-133 486.0
6 TraesCS7D01G496700 chr7D 99.291 141 1 0 2851 2991 630792251 630792391 4.250000e-64 255.0
7 TraesCS7D01G496700 chr7D 97.872 141 2 1 2851 2991 26719240 26719101 3.310000e-60 243.0
8 TraesCS7D01G496700 chr7D 96.479 142 3 2 2851 2991 164404358 164404498 1.990000e-57 233.0
9 TraesCS7D01G496700 chr7B 92.272 2834 119 43 5 2778 685361447 685358654 0.000000e+00 3928.0
10 TraesCS7D01G496700 chr7B 84.797 592 84 6 309 896 538053831 538053242 1.030000e-164 590.0
11 TraesCS7D01G496700 chr5B 84.512 1343 183 20 973 2307 487438430 487439755 0.000000e+00 1304.0
12 TraesCS7D01G496700 chr5B 82.999 1347 197 18 968 2307 505379225 505380546 0.000000e+00 1190.0
13 TraesCS7D01G496700 chr5B 85.023 661 74 18 315 952 487437658 487438316 0.000000e+00 649.0
14 TraesCS7D01G496700 chr5B 86.482 577 67 8 315 884 505378335 505378907 1.010000e-174 623.0
15 TraesCS7D01G496700 chr5D 84.431 1336 185 18 979 2307 406416224 406417543 0.000000e+00 1293.0
16 TraesCS7D01G496700 chr5D 83.308 1324 194 18 993 2307 417828017 417829322 0.000000e+00 1195.0
17 TraesCS7D01G496700 chr5D 86.615 650 72 13 315 952 406415458 406416104 0.000000e+00 704.0
18 TraesCS7D01G496700 chr5D 85.624 633 76 12 313 936 417827100 417827726 0.000000e+00 651.0
19 TraesCS7D01G496700 chr5D 82.456 285 45 3 522 802 406395001 406394718 9.210000e-61 244.0
20 TraesCS7D01G496700 chr5D 96.454 141 5 0 2851 2991 324580824 324580684 1.990000e-57 233.0
21 TraesCS7D01G496700 chr5A 84.351 1310 185 18 1002 2307 512060357 512061650 0.000000e+00 1266.0
22 TraesCS7D01G496700 chr5A 83.133 1328 190 20 993 2307 532740641 532741947 0.000000e+00 1181.0
23 TraesCS7D01G496700 chr5A 86.350 652 73 11 315 952 512059559 512060208 0.000000e+00 697.0
24 TraesCS7D01G496700 chr5A 93.536 263 5 5 2981 3234 553545403 553545662 6.730000e-102 381.0
25 TraesCS7D01G496700 chr6D 83.702 1356 191 22 976 2307 36253438 36254787 0.000000e+00 1253.0
26 TraesCS7D01G496700 chr6D 87.269 542 67 2 412 952 36252793 36253333 4.710000e-173 617.0
27 TraesCS7D01G496700 chr6D 94.783 345 5 3 2990 3323 44121046 44120704 2.940000e-145 525.0
28 TraesCS7D01G496700 chr6D 92.683 369 13 6 2966 3323 54870181 54870546 1.370000e-143 520.0
29 TraesCS7D01G496700 chr6D 94.030 67 3 1 2774 2839 95953872 95953806 2.110000e-17 100.0
30 TraesCS7D01G496700 chr6B 83.640 1357 190 24 976 2307 75942312 75943661 0.000000e+00 1247.0
31 TraesCS7D01G496700 chr6B 92.058 277 12 3 2986 3252 694014811 694014535 6.730000e-102 381.0
32 TraesCS7D01G496700 chr1B 83.742 1347 189 27 979 2307 598191417 598192751 0.000000e+00 1247.0
33 TraesCS7D01G496700 chr1B 85.081 677 78 16 291 952 598190638 598191306 0.000000e+00 669.0
34 TraesCS7D01G496700 chr6A 83.137 1358 195 26 976 2307 40298742 40300091 0.000000e+00 1208.0
35 TraesCS7D01G496700 chr6A 84.590 597 81 10 362 952 40298046 40298637 1.720000e-162 582.0
36 TraesCS7D01G496700 chr1D 86.686 676 69 16 291 952 440718410 440719078 0.000000e+00 730.0
37 TraesCS7D01G496700 chr1D 95.906 342 3 3 2991 3323 38532305 38532644 8.110000e-151 544.0
38 TraesCS7D01G496700 chr1D 95.894 341 4 2 2992 3323 387160464 387160803 8.110000e-151 544.0
39 TraesCS7D01G496700 chr1D 97.163 141 4 0 2851 2991 469382909 469382769 4.280000e-59 239.0
40 TraesCS7D01G496700 chr1D 96.454 141 5 0 2851 2991 307825332 307825472 1.990000e-57 233.0
41 TraesCS7D01G496700 chr1D 92.537 67 4 1 2774 2839 272621333 272621267 9.810000e-16 95.3
42 TraesCS7D01G496700 chr1A 85.109 685 68 22 285 952 537347839 537347172 0.000000e+00 669.0
43 TraesCS7D01G496700 chr1A 88.060 67 5 3 2773 2837 208685611 208685546 3.550000e-10 76.8
44 TraesCS7D01G496700 chr4D 95.894 341 4 2 2992 3323 392176847 392177186 8.110000e-151 544.0
45 TraesCS7D01G496700 chr4D 91.420 338 17 5 2991 3323 46100569 46100899 1.410000e-123 453.0
46 TraesCS7D01G496700 chr4D 96.454 141 5 0 2851 2991 498514653 498514513 1.990000e-57 233.0
47 TraesCS7D01G496700 chr2D 94.012 334 14 3 2992 3323 632274798 632275127 4.950000e-138 501.0
48 TraesCS7D01G496700 chr2D 98.551 138 1 1 2854 2991 486304734 486304598 3.310000e-60 243.0
49 TraesCS7D01G496700 chr2D 90.741 54 5 0 2773 2826 649336655 649336708 4.600000e-09 73.1
50 TraesCS7D01G496700 chr3D 95.149 268 3 2 3066 3323 613988829 613988562 6.630000e-112 414.0
51 TraesCS7D01G496700 chr3D 97.887 142 2 1 2992 3132 489544392 489544251 9.210000e-61 244.0
52 TraesCS7D01G496700 chr3D 94.194 155 8 1 2838 2991 191557588 191557742 5.540000e-58 235.0
53 TraesCS7D01G496700 chr3D 81.119 286 47 7 533 813 613057172 613057455 4.310000e-54 222.0
54 TraesCS7D01G496700 chr3D 92.424 66 5 0 2774 2839 207707044 207707109 9.810000e-16 95.3
55 TraesCS7D01G496700 chr3D 86.567 67 6 2 2773 2837 54837912 54837847 1.650000e-08 71.3
56 TraesCS7D01G496700 chr3B 93.496 246 13 2 2992 3234 13690521 13690276 2.440000e-96 363.0
57 TraesCS7D01G496700 chr3B 92.308 65 3 2 2774 2836 323358091 323358027 1.270000e-14 91.6
58 TraesCS7D01G496700 chr2A 92.063 63 5 0 2777 2839 609216875 609216813 4.570000e-14 89.8
59 TraesCS7D01G496700 chr2B 89.394 66 6 1 2773 2837 424323463 424323398 7.640000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G496700 chr7D 603582999 603586321 3322 False 6137.0 6137 100.0000 1 3323 1 chr7D.!!$F3 3322
1 TraesCS7D01G496700 chr7D 509630732 509631723 991 True 1013.0 1013 85.2150 1028 2020 1 chr7D.!!$R4 992
2 TraesCS7D01G496700 chr7B 685358654 685361447 2793 True 3928.0 3928 92.2720 5 2778 1 chr7B.!!$R2 2773
3 TraesCS7D01G496700 chr7B 538053242 538053831 589 True 590.0 590 84.7970 309 896 1 chr7B.!!$R1 587
4 TraesCS7D01G496700 chr5B 487437658 487439755 2097 False 976.5 1304 84.7675 315 2307 2 chr5B.!!$F1 1992
5 TraesCS7D01G496700 chr5B 505378335 505380546 2211 False 906.5 1190 84.7405 315 2307 2 chr5B.!!$F2 1992
6 TraesCS7D01G496700 chr5D 406415458 406417543 2085 False 998.5 1293 85.5230 315 2307 2 chr5D.!!$F1 1992
7 TraesCS7D01G496700 chr5D 417827100 417829322 2222 False 923.0 1195 84.4660 313 2307 2 chr5D.!!$F2 1994
8 TraesCS7D01G496700 chr5A 532740641 532741947 1306 False 1181.0 1181 83.1330 993 2307 1 chr5A.!!$F1 1314
9 TraesCS7D01G496700 chr5A 512059559 512061650 2091 False 981.5 1266 85.3505 315 2307 2 chr5A.!!$F3 1992
10 TraesCS7D01G496700 chr6D 36252793 36254787 1994 False 935.0 1253 85.4855 412 2307 2 chr6D.!!$F2 1895
11 TraesCS7D01G496700 chr6B 75942312 75943661 1349 False 1247.0 1247 83.6400 976 2307 1 chr6B.!!$F1 1331
12 TraesCS7D01G496700 chr1B 598190638 598192751 2113 False 958.0 1247 84.4115 291 2307 2 chr1B.!!$F1 2016
13 TraesCS7D01G496700 chr6A 40298046 40300091 2045 False 895.0 1208 83.8635 362 2307 2 chr6A.!!$F1 1945
14 TraesCS7D01G496700 chr1D 440718410 440719078 668 False 730.0 730 86.6860 291 952 1 chr1D.!!$F4 661
15 TraesCS7D01G496700 chr1A 537347172 537347839 667 True 669.0 669 85.1090 285 952 1 chr1A.!!$R2 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 171 0.108520 GTAACTCAATCCGGCACCGA 60.109 55.0 11.42 0.0 42.83 4.69 F
204 206 0.178912 ACCGACTTAACCCTCCCACT 60.179 55.0 0.00 0.0 0.00 4.00 F
243 245 0.179127 CTCTCAGCCTCGAATCGCAA 60.179 55.0 0.00 0.0 0.00 4.85 F
1974 2311 0.670706 CGCCGGAGAAGATGATCAGA 59.329 55.0 5.05 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2311 0.109873 CGCTGTAGACGAAGACGGTT 60.110 55.0 0.00 0.0 44.46 4.44 R
1986 2323 1.550065 CGAACTCCATGTCGCTGTAG 58.450 55.0 0.00 0.0 0.00 2.74 R
2199 2560 1.630244 CGTTCTTGGAGAAGCCGCTG 61.630 60.0 0.00 0.0 40.66 5.18 R
3025 3426 0.036164 TTGTCTGGTGCGCCATTAGT 59.964 50.0 21.54 0.0 45.05 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 81 7.246674 TGTACTCTGCTTTTACAGAAAACAG 57.753 36.000 0.00 0.00 45.72 3.16
80 82 7.045416 TGTACTCTGCTTTTACAGAAAACAGA 58.955 34.615 0.00 4.99 45.72 3.41
82 84 5.995055 CTCTGCTTTTACAGAAAACAGAGG 58.005 41.667 17.70 5.91 45.72 3.69
83 85 5.680619 TCTGCTTTTACAGAAAACAGAGGA 58.319 37.500 1.66 0.00 43.59 3.71
84 86 5.760253 TCTGCTTTTACAGAAAACAGAGGAG 59.240 40.000 1.66 0.00 43.59 3.69
92 94 4.090090 CAGAAAACAGAGGAGGAGGAGTA 58.910 47.826 0.00 0.00 0.00 2.59
93 95 4.159506 CAGAAAACAGAGGAGGAGGAGTAG 59.840 50.000 0.00 0.00 0.00 2.57
139 141 2.997986 TCCTTTTTCCTAATGCGACGTC 59.002 45.455 5.18 5.18 0.00 4.34
169 171 0.108520 GTAACTCAATCCGGCACCGA 60.109 55.000 11.42 0.00 42.83 4.69
202 204 2.023695 AGATACCGACTTAACCCTCCCA 60.024 50.000 0.00 0.00 0.00 4.37
203 205 1.560505 TACCGACTTAACCCTCCCAC 58.439 55.000 0.00 0.00 0.00 4.61
204 206 0.178912 ACCGACTTAACCCTCCCACT 60.179 55.000 0.00 0.00 0.00 4.00
205 207 0.535797 CCGACTTAACCCTCCCACTC 59.464 60.000 0.00 0.00 0.00 3.51
206 208 0.535797 CGACTTAACCCTCCCACTCC 59.464 60.000 0.00 0.00 0.00 3.85
209 211 1.132495 ACTTAACCCTCCCACTCCTGT 60.132 52.381 0.00 0.00 0.00 4.00
223 225 7.114095 TCCCACTCCTGTTATTAATACCAAAC 58.886 38.462 0.00 0.00 0.00 2.93
236 238 0.832135 ACCAAACCTCTCAGCCTCGA 60.832 55.000 0.00 0.00 0.00 4.04
243 245 0.179127 CTCTCAGCCTCGAATCGCAA 60.179 55.000 0.00 0.00 0.00 4.85
251 253 2.487934 CCTCGAATCGCAATCTTCCAT 58.512 47.619 0.00 0.00 0.00 3.41
254 256 1.860950 CGAATCGCAATCTTCCATCGT 59.139 47.619 0.00 0.00 0.00 3.73
265 267 1.126113 CTTCCATCGTCACGAAAACCG 59.874 52.381 2.76 0.00 39.99 4.44
291 293 3.155167 ACCCGCCTCGAATCCTCC 61.155 66.667 0.00 0.00 0.00 4.30
574 624 1.812686 CTTCTTCCACGTGGTCCCGA 61.813 60.000 32.74 20.76 36.34 5.14
813 863 4.521062 CCCGAGCTGCTCTTCCGG 62.521 72.222 25.59 21.40 39.85 5.14
1872 2209 1.359459 GGGACAAGATGCGGTTCGTC 61.359 60.000 0.00 0.00 0.00 4.20
1974 2311 0.670706 CGCCGGAGAAGATGATCAGA 59.329 55.000 5.05 0.00 0.00 3.27
1986 2323 2.631418 TGATCAGAACCGTCTTCGTC 57.369 50.000 0.00 0.00 35.01 4.20
2273 2634 2.111878 CCCCGAGGCCATCATGAC 59.888 66.667 5.01 0.00 0.00 3.06
2286 2647 3.092511 ATGACCCAGGCCATCGCT 61.093 61.111 5.01 0.00 34.44 4.93
2321 2682 6.640518 ACCAGAAGCTTCAAATCTACGATTA 58.359 36.000 27.57 0.00 0.00 1.75
2322 2683 6.758886 ACCAGAAGCTTCAAATCTACGATTAG 59.241 38.462 27.57 0.00 0.00 1.73
2324 2685 7.278868 CCAGAAGCTTCAAATCTACGATTAGTT 59.721 37.037 27.57 0.00 0.00 2.24
2325 2686 8.660373 CAGAAGCTTCAAATCTACGATTAGTTT 58.340 33.333 27.57 0.00 0.00 2.66
2326 2687 8.874816 AGAAGCTTCAAATCTACGATTAGTTTC 58.125 33.333 27.57 0.00 0.00 2.78
2329 2690 8.660373 AGCTTCAAATCTACGATTAGTTTCTTG 58.340 33.333 0.00 0.00 0.00 3.02
2330 2691 8.443937 GCTTCAAATCTACGATTAGTTTCTTGT 58.556 33.333 0.00 0.00 0.00 3.16
2352 2713 8.879427 TTGTTAGATTAGATAGATCGATCCCA 57.121 34.615 21.66 10.63 0.00 4.37
2365 2726 4.563337 TCGATCCCATACTTAGTTCGTG 57.437 45.455 0.00 0.00 0.00 4.35
2366 2727 4.201657 TCGATCCCATACTTAGTTCGTGA 58.798 43.478 0.00 0.00 0.00 4.35
2379 2750 6.149142 ACTTAGTTCGTGACGATTCTCTAGTT 59.851 38.462 9.08 0.00 35.23 2.24
2380 2751 4.724303 AGTTCGTGACGATTCTCTAGTTG 58.276 43.478 9.08 0.00 35.23 3.16
2382 2753 5.048921 AGTTCGTGACGATTCTCTAGTTGAA 60.049 40.000 9.08 4.08 35.23 2.69
2383 2754 4.720090 TCGTGACGATTCTCTAGTTGAAC 58.280 43.478 2.39 0.00 0.00 3.18
2384 2755 4.454847 TCGTGACGATTCTCTAGTTGAACT 59.545 41.667 2.39 2.37 0.00 3.01
2385 2756 4.789119 CGTGACGATTCTCTAGTTGAACTC 59.211 45.833 0.00 0.00 0.00 3.01
2387 2758 6.326375 GTGACGATTCTCTAGTTGAACTCAT 58.674 40.000 0.00 0.00 0.00 2.90
2388 2759 6.252441 GTGACGATTCTCTAGTTGAACTCATG 59.748 42.308 0.00 0.00 0.00 3.07
2389 2760 5.105752 ACGATTCTCTAGTTGAACTCATGC 58.894 41.667 0.00 0.00 0.00 4.06
2396 2784 0.238289 GTTGAACTCATGCCGTGGTG 59.762 55.000 0.00 0.00 0.00 4.17
2403 2791 0.676466 TCATGCCGTGGTGATTGGTC 60.676 55.000 0.00 0.00 0.00 4.02
2406 2794 1.302511 GCCGTGGTGATTGGTCAGT 60.303 57.895 0.00 0.00 34.36 3.41
2413 2801 1.270550 GGTGATTGGTCAGTTGGCTTG 59.729 52.381 0.00 0.00 34.36 4.01
2420 2808 2.687935 TGGTCAGTTGGCTTGTTTTCTC 59.312 45.455 0.00 0.00 0.00 2.87
2421 2809 2.952310 GGTCAGTTGGCTTGTTTTCTCT 59.048 45.455 0.00 0.00 0.00 3.10
2422 2810 3.243201 GGTCAGTTGGCTTGTTTTCTCTG 60.243 47.826 0.00 0.00 0.00 3.35
2423 2811 2.951642 TCAGTTGGCTTGTTTTCTCTGG 59.048 45.455 0.00 0.00 0.00 3.86
2424 2812 2.951642 CAGTTGGCTTGTTTTCTCTGGA 59.048 45.455 0.00 0.00 0.00 3.86
2425 2813 3.571401 CAGTTGGCTTGTTTTCTCTGGAT 59.429 43.478 0.00 0.00 0.00 3.41
2426 2814 4.038402 CAGTTGGCTTGTTTTCTCTGGATT 59.962 41.667 0.00 0.00 0.00 3.01
2428 2816 2.297033 TGGCTTGTTTTCTCTGGATTGC 59.703 45.455 0.00 0.00 0.00 3.56
2430 2818 3.243839 GGCTTGTTTTCTCTGGATTGCAA 60.244 43.478 0.00 0.00 0.00 4.08
2431 2819 4.370917 GCTTGTTTTCTCTGGATTGCAAA 58.629 39.130 1.71 0.00 0.00 3.68
2432 2820 4.209911 GCTTGTTTTCTCTGGATTGCAAAC 59.790 41.667 1.71 0.00 0.00 2.93
2433 2821 5.594926 CTTGTTTTCTCTGGATTGCAAACT 58.405 37.500 1.71 0.00 0.00 2.66
2475 2863 3.611113 GTGAATGCAATGCAGTGATTCAC 59.389 43.478 31.83 31.83 42.92 3.18
2492 2880 7.065085 AGTGATTCACATTTCGTAGGATTTGAG 59.935 37.037 18.57 0.00 36.74 3.02
2530 2918 7.539436 TCGATTCTATATACAGCCTGATGTTC 58.461 38.462 0.00 0.00 34.56 3.18
2553 2941 4.751767 ATTGCTGTTTGAAACCCTGAAA 57.248 36.364 5.50 0.00 0.00 2.69
2554 2942 4.751767 TTGCTGTTTGAAACCCTGAAAT 57.248 36.364 5.50 0.00 0.00 2.17
2561 2949 5.660864 TGTTTGAAACCCTGAAATCCTCTTT 59.339 36.000 5.50 0.00 0.00 2.52
2562 2950 6.156083 TGTTTGAAACCCTGAAATCCTCTTTT 59.844 34.615 5.50 0.00 0.00 2.27
2563 2951 6.405278 TTGAAACCCTGAAATCCTCTTTTC 57.595 37.500 0.00 0.00 36.38 2.29
2564 2952 5.705400 TGAAACCCTGAAATCCTCTTTTCT 58.295 37.500 0.00 0.00 36.71 2.52
2565 2953 5.536161 TGAAACCCTGAAATCCTCTTTTCTG 59.464 40.000 0.00 0.00 36.71 3.02
2566 2954 5.324832 AACCCTGAAATCCTCTTTTCTGA 57.675 39.130 5.67 0.00 36.95 3.27
2567 2955 5.324832 ACCCTGAAATCCTCTTTTCTGAA 57.675 39.130 5.67 0.00 36.95 3.02
2568 2956 5.896963 ACCCTGAAATCCTCTTTTCTGAAT 58.103 37.500 0.00 0.00 36.95 2.57
2569 2957 6.318112 ACCCTGAAATCCTCTTTTCTGAATT 58.682 36.000 0.00 0.00 36.95 2.17
2570 2958 6.210185 ACCCTGAAATCCTCTTTTCTGAATTG 59.790 38.462 0.00 0.00 36.95 2.32
2571 2959 6.098017 CCTGAAATCCTCTTTTCTGAATTGC 58.902 40.000 0.00 0.00 36.95 3.56
2572 2960 6.294899 CCTGAAATCCTCTTTTCTGAATTGCA 60.295 38.462 0.00 0.00 36.95 4.08
2573 2961 7.053316 TGAAATCCTCTTTTCTGAATTGCAA 57.947 32.000 0.00 0.00 36.71 4.08
2574 2962 6.925165 TGAAATCCTCTTTTCTGAATTGCAAC 59.075 34.615 0.00 0.00 36.71 4.17
2575 2963 4.853924 TCCTCTTTTCTGAATTGCAACC 57.146 40.909 0.00 0.00 0.00 3.77
2576 2964 4.214310 TCCTCTTTTCTGAATTGCAACCA 58.786 39.130 0.00 1.82 0.00 3.67
2577 2965 4.834496 TCCTCTTTTCTGAATTGCAACCAT 59.166 37.500 0.00 0.00 0.00 3.55
2578 2966 4.927425 CCTCTTTTCTGAATTGCAACCATG 59.073 41.667 0.00 0.00 0.00 3.66
2579 2967 5.510179 CCTCTTTTCTGAATTGCAACCATGT 60.510 40.000 0.00 0.00 0.00 3.21
2580 2968 5.291178 TCTTTTCTGAATTGCAACCATGTG 58.709 37.500 0.00 0.00 0.00 3.21
2581 2969 2.728690 TCTGAATTGCAACCATGTGC 57.271 45.000 0.00 1.45 45.15 4.57
2582 2970 2.241160 TCTGAATTGCAACCATGTGCT 58.759 42.857 0.00 0.00 45.17 4.40
2583 2971 2.629137 TCTGAATTGCAACCATGTGCTT 59.371 40.909 0.00 0.00 45.17 3.91
2584 2972 3.069872 TCTGAATTGCAACCATGTGCTTT 59.930 39.130 0.00 3.97 45.17 3.51
2585 2973 3.391965 TGAATTGCAACCATGTGCTTTC 58.608 40.909 0.00 11.61 45.17 2.62
2649 3047 5.455755 CCTGGTGACTGATATGATTGGTGAT 60.456 44.000 0.00 0.00 0.00 3.06
2688 3086 7.225538 CGGATATTTCTGAATGCTACAGTTTCT 59.774 37.037 0.00 0.00 36.81 2.52
2724 3122 5.164158 GCAGTATCAGCAATTTTGTTGTTCG 60.164 40.000 6.97 0.00 39.90 3.95
2738 3136 5.269505 TGTTGTTCGGGAAATGAAACAAT 57.730 34.783 3.21 0.00 0.00 2.71
2748 3146 8.842280 TCGGGAAATGAAACAATAATATGGTAC 58.158 33.333 0.00 0.00 0.00 3.34
2749 3147 7.801315 CGGGAAATGAAACAATAATATGGTACG 59.199 37.037 0.00 0.00 0.00 3.67
2752 3153 9.445786 GAAATGAAACAATAATATGGTACGTGG 57.554 33.333 0.00 0.00 0.00 4.94
2778 3179 1.035139 ACCTTGCACAAAGAAGGCTG 58.965 50.000 0.00 0.00 42.32 4.85
2779 3180 0.319297 CCTTGCACAAAGAAGGCTGC 60.319 55.000 0.00 0.00 38.24 5.25
2780 3181 0.662374 CTTGCACAAAGAAGGCTGCG 60.662 55.000 0.00 0.00 38.24 5.18
2781 3182 1.383456 TTGCACAAAGAAGGCTGCGT 61.383 50.000 0.00 0.00 31.96 5.24
2782 3183 1.360192 GCACAAAGAAGGCTGCGTT 59.640 52.632 7.37 7.37 0.00 4.84
2783 3184 0.249031 GCACAAAGAAGGCTGCGTTT 60.249 50.000 9.13 0.00 0.00 3.60
2784 3185 1.480205 CACAAAGAAGGCTGCGTTTG 58.520 50.000 9.13 12.90 36.24 2.93
2785 3186 0.385390 ACAAAGAAGGCTGCGTTTGG 59.615 50.000 16.66 2.56 34.77 3.28
2786 3187 0.940991 CAAAGAAGGCTGCGTTTGGC 60.941 55.000 9.13 0.00 43.96 4.52
2795 3196 2.417097 GCGTTTGGCAGCAAGGTT 59.583 55.556 0.00 0.00 42.87 3.50
2796 3197 1.227234 GCGTTTGGCAGCAAGGTTT 60.227 52.632 0.00 0.00 42.87 3.27
2797 3198 0.809636 GCGTTTGGCAGCAAGGTTTT 60.810 50.000 0.00 0.00 42.87 2.43
2798 3199 1.650825 CGTTTGGCAGCAAGGTTTTT 58.349 45.000 0.00 0.00 0.00 1.94
2823 3224 8.909708 TTCAAAGTTTTCTGATAATATTGCGG 57.090 30.769 0.00 0.00 0.00 5.69
2824 3225 8.050778 TCAAAGTTTTCTGATAATATTGCGGT 57.949 30.769 0.00 0.00 0.00 5.68
2825 3226 8.519526 TCAAAGTTTTCTGATAATATTGCGGTT 58.480 29.630 0.00 0.00 0.00 4.44
2826 3227 9.139174 CAAAGTTTTCTGATAATATTGCGGTTT 57.861 29.630 0.00 0.00 0.00 3.27
2827 3228 8.687824 AAGTTTTCTGATAATATTGCGGTTTG 57.312 30.769 0.00 0.00 0.00 2.93
2828 3229 7.826690 AGTTTTCTGATAATATTGCGGTTTGT 58.173 30.769 0.00 0.00 0.00 2.83
2829 3230 8.952278 AGTTTTCTGATAATATTGCGGTTTGTA 58.048 29.630 0.00 0.00 0.00 2.41
2830 3231 9.562583 GTTTTCTGATAATATTGCGGTTTGTAA 57.437 29.630 0.00 0.00 0.00 2.41
2851 3252 3.547649 AAAAACAAGGACGCCGATAAC 57.452 42.857 0.00 0.00 0.00 1.89
2852 3253 1.073177 AAACAAGGACGCCGATAACG 58.927 50.000 0.00 0.00 39.43 3.18
2854 3255 0.734942 ACAAGGACGCCGATAACGTG 60.735 55.000 0.00 0.00 45.24 4.49
2855 3256 0.734942 CAAGGACGCCGATAACGTGT 60.735 55.000 0.00 0.00 45.24 4.49
2856 3257 0.734942 AAGGACGCCGATAACGTGTG 60.735 55.000 0.00 0.00 45.24 3.82
2857 3258 2.162754 GGACGCCGATAACGTGTGG 61.163 63.158 0.00 0.00 45.24 4.17
2858 3259 2.125832 ACGCCGATAACGTGTGGG 60.126 61.111 0.00 0.00 43.23 4.61
2859 3260 3.560278 CGCCGATAACGTGTGGGC 61.560 66.667 14.65 14.65 40.36 5.36
2860 3261 3.560278 GCCGATAACGTGTGGGCG 61.560 66.667 10.63 1.42 37.88 6.13
2867 3268 2.031465 ACGTGTGGGCGTTAAGGG 59.969 61.111 0.00 0.00 43.04 3.95
2868 3269 2.344500 CGTGTGGGCGTTAAGGGA 59.656 61.111 0.00 0.00 0.00 4.20
2869 3270 1.078708 CGTGTGGGCGTTAAGGGAT 60.079 57.895 0.00 0.00 0.00 3.85
2870 3271 1.087771 CGTGTGGGCGTTAAGGGATC 61.088 60.000 0.00 0.00 0.00 3.36
2871 3272 0.252197 GTGTGGGCGTTAAGGGATCT 59.748 55.000 0.00 0.00 0.00 2.75
2872 3273 0.251916 TGTGGGCGTTAAGGGATCTG 59.748 55.000 0.00 0.00 0.00 2.90
2873 3274 1.095807 GTGGGCGTTAAGGGATCTGC 61.096 60.000 0.00 0.00 0.00 4.26
2874 3275 1.526225 GGGCGTTAAGGGATCTGCC 60.526 63.158 0.00 0.00 41.72 4.85
2884 3285 3.890527 GGATCTGCCCACACATTCT 57.109 52.632 0.00 0.00 0.00 2.40
2885 3286 1.386533 GGATCTGCCCACACATTCTG 58.613 55.000 0.00 0.00 0.00 3.02
2886 3287 1.340405 GGATCTGCCCACACATTCTGT 60.340 52.381 0.00 0.00 0.00 3.41
2897 3298 2.949177 ACATTCTGTGTGGTGCCTAA 57.051 45.000 0.00 0.00 40.28 2.69
2898 3299 2.783135 ACATTCTGTGTGGTGCCTAAG 58.217 47.619 0.00 0.00 40.28 2.18
2899 3300 2.371841 ACATTCTGTGTGGTGCCTAAGA 59.628 45.455 0.00 0.00 40.28 2.10
2900 3301 2.839486 TTCTGTGTGGTGCCTAAGAG 57.161 50.000 0.00 0.00 0.00 2.85
2901 3302 0.976641 TCTGTGTGGTGCCTAAGAGG 59.023 55.000 0.00 0.00 38.80 3.69
2902 3303 0.976641 CTGTGTGGTGCCTAAGAGGA 59.023 55.000 0.00 0.00 37.67 3.71
2903 3304 0.685097 TGTGTGGTGCCTAAGAGGAC 59.315 55.000 0.00 0.00 37.67 3.85
2904 3305 0.036294 GTGTGGTGCCTAAGAGGACC 60.036 60.000 0.00 2.40 37.67 4.46
2905 3306 0.472925 TGTGGTGCCTAAGAGGACCA 60.473 55.000 0.31 0.31 40.68 4.02
2906 3307 0.250513 GTGGTGCCTAAGAGGACCAG 59.749 60.000 5.06 0.00 42.28 4.00
2907 3308 1.222113 GGTGCCTAAGAGGACCAGC 59.778 63.158 0.00 0.00 37.67 4.85
2908 3309 1.222113 GTGCCTAAGAGGACCAGCC 59.778 63.158 0.00 0.00 37.67 4.85
2909 3310 1.995626 TGCCTAAGAGGACCAGCCC 60.996 63.158 0.00 0.00 37.67 5.19
2910 3311 1.995626 GCCTAAGAGGACCAGCCCA 60.996 63.158 0.00 0.00 37.67 5.36
2911 3312 1.908483 CCTAAGAGGACCAGCCCAC 59.092 63.158 0.00 0.00 37.67 4.61
2912 3313 0.909610 CCTAAGAGGACCAGCCCACA 60.910 60.000 0.00 0.00 37.67 4.17
2913 3314 0.250513 CTAAGAGGACCAGCCCACAC 59.749 60.000 0.00 0.00 37.37 3.82
2914 3315 1.541310 TAAGAGGACCAGCCCACACG 61.541 60.000 0.00 0.00 37.37 4.49
2917 3318 4.643387 GGACCAGCCCACACGCTT 62.643 66.667 0.00 0.00 36.82 4.68
2918 3319 3.357079 GACCAGCCCACACGCTTG 61.357 66.667 0.00 0.00 36.82 4.01
2919 3320 4.189580 ACCAGCCCACACGCTTGT 62.190 61.111 0.00 0.00 36.82 3.16
2929 3330 2.439338 ACGCTTGTGTGTGGGCAA 60.439 55.556 0.00 0.00 35.34 4.52
2930 3331 2.049185 ACGCTTGTGTGTGGGCAAA 61.049 52.632 0.00 0.00 35.34 3.68
2931 3332 1.140589 CGCTTGTGTGTGGGCAAAA 59.859 52.632 0.00 0.00 0.00 2.44
2932 3333 0.249405 CGCTTGTGTGTGGGCAAAAT 60.249 50.000 0.00 0.00 0.00 1.82
2933 3334 1.000827 CGCTTGTGTGTGGGCAAAATA 60.001 47.619 0.00 0.00 0.00 1.40
2934 3335 2.544694 CGCTTGTGTGTGGGCAAAATAA 60.545 45.455 0.00 0.00 0.00 1.40
2935 3336 2.799978 GCTTGTGTGTGGGCAAAATAAC 59.200 45.455 0.00 0.00 0.00 1.89
2936 3337 3.492482 GCTTGTGTGTGGGCAAAATAACT 60.492 43.478 0.00 0.00 0.00 2.24
2937 3338 4.261825 GCTTGTGTGTGGGCAAAATAACTA 60.262 41.667 0.00 0.00 0.00 2.24
2938 3339 5.446143 TTGTGTGTGGGCAAAATAACTAG 57.554 39.130 0.00 0.00 0.00 2.57
2939 3340 3.254657 TGTGTGTGGGCAAAATAACTAGC 59.745 43.478 0.00 0.00 0.00 3.42
2940 3341 2.486203 TGTGTGGGCAAAATAACTAGCG 59.514 45.455 0.00 0.00 0.00 4.26
2941 3342 1.470890 TGTGGGCAAAATAACTAGCGC 59.529 47.619 0.00 0.00 39.95 5.92
2942 3343 1.099689 TGGGCAAAATAACTAGCGCC 58.900 50.000 2.29 0.00 38.93 6.53
2943 3344 3.938653 GGCAAAATAACTAGCGCCC 57.061 52.632 2.29 0.00 33.31 6.13
2944 3345 1.099689 GGCAAAATAACTAGCGCCCA 58.900 50.000 2.29 0.00 33.31 5.36
2945 3346 1.202256 GGCAAAATAACTAGCGCCCAC 60.202 52.381 2.29 0.00 33.31 4.61
2946 3347 1.470890 GCAAAATAACTAGCGCCCACA 59.529 47.619 2.29 0.00 0.00 4.17
2947 3348 2.731027 GCAAAATAACTAGCGCCCACAC 60.731 50.000 2.29 0.00 0.00 3.82
2948 3349 1.365699 AAATAACTAGCGCCCACACG 58.634 50.000 2.29 0.00 0.00 4.49
2956 3357 3.591835 CGCCCACACGCCTGTTTT 61.592 61.111 0.00 0.00 0.00 2.43
2957 3358 2.811799 GCCCACACGCCTGTTTTT 59.188 55.556 0.00 0.00 0.00 1.94
2958 3359 1.299850 GCCCACACGCCTGTTTTTC 60.300 57.895 0.00 0.00 0.00 2.29
2959 3360 1.362355 CCCACACGCCTGTTTTTCC 59.638 57.895 0.00 0.00 0.00 3.13
2960 3361 1.362355 CCACACGCCTGTTTTTCCC 59.638 57.895 0.00 0.00 0.00 3.97
2961 3362 1.362355 CACACGCCTGTTTTTCCCC 59.638 57.895 0.00 0.00 0.00 4.81
2962 3363 1.106944 CACACGCCTGTTTTTCCCCT 61.107 55.000 0.00 0.00 0.00 4.79
2963 3364 0.822121 ACACGCCTGTTTTTCCCCTC 60.822 55.000 0.00 0.00 0.00 4.30
2964 3365 1.228459 ACGCCTGTTTTTCCCCTCC 60.228 57.895 0.00 0.00 0.00 4.30
2965 3366 1.977009 CGCCTGTTTTTCCCCTCCC 60.977 63.158 0.00 0.00 0.00 4.30
2966 3367 1.977009 GCCTGTTTTTCCCCTCCCG 60.977 63.158 0.00 0.00 0.00 5.14
2967 3368 1.304134 CCTGTTTTTCCCCTCCCGG 60.304 63.158 0.00 0.00 0.00 5.73
2968 3369 1.458927 CTGTTTTTCCCCTCCCGGT 59.541 57.895 0.00 0.00 0.00 5.28
2969 3370 0.608308 CTGTTTTTCCCCTCCCGGTC 60.608 60.000 0.00 0.00 0.00 4.79
2970 3371 1.303888 GTTTTTCCCCTCCCGGTCC 60.304 63.158 0.00 0.00 0.00 4.46
2971 3372 2.540963 TTTTTCCCCTCCCGGTCCC 61.541 63.158 0.00 0.00 0.00 4.46
2972 3373 3.510432 TTTTCCCCTCCCGGTCCCT 62.510 63.158 0.00 0.00 0.00 4.20
2973 3374 3.937372 TTTCCCCTCCCGGTCCCTC 62.937 68.421 0.00 0.00 0.00 4.30
2975 3376 4.416601 CCCCTCCCGGTCCCTCTT 62.417 72.222 0.00 0.00 0.00 2.85
2976 3377 2.694305 CCCTCCCGGTCCCTCTTA 59.306 66.667 0.00 0.00 0.00 2.10
2977 3378 1.761271 CCCTCCCGGTCCCTCTTAC 60.761 68.421 0.00 0.00 0.00 2.34
2978 3379 1.001248 CCTCCCGGTCCCTCTTACA 59.999 63.158 0.00 0.00 0.00 2.41
2979 3380 1.328430 CCTCCCGGTCCCTCTTACAC 61.328 65.000 0.00 0.00 0.00 2.90
2980 3381 1.664321 CTCCCGGTCCCTCTTACACG 61.664 65.000 0.00 0.00 0.00 4.49
2981 3382 2.183555 CCGGTCCCTCTTACACGC 59.816 66.667 0.00 0.00 0.00 5.34
2982 3383 2.202570 CGGTCCCTCTTACACGCG 60.203 66.667 3.53 3.53 0.00 6.01
2983 3384 2.968206 GGTCCCTCTTACACGCGT 59.032 61.111 5.58 5.58 0.00 6.01
2984 3385 1.445582 GGTCCCTCTTACACGCGTG 60.446 63.158 35.99 35.99 0.00 5.34
2985 3386 2.092882 GTCCCTCTTACACGCGTGC 61.093 63.158 37.35 15.17 0.00 5.34
2986 3387 3.179265 CCCTCTTACACGCGTGCG 61.179 66.667 37.35 25.19 46.03 5.34
3005 3406 4.053903 GCGTGTGCACTACTAGAAAAAG 57.946 45.455 19.41 0.00 42.15 2.27
3006 3407 3.120649 GCGTGTGCACTACTAGAAAAAGG 60.121 47.826 19.41 0.10 42.15 3.11
3007 3408 3.432252 CGTGTGCACTACTAGAAAAAGGG 59.568 47.826 19.41 0.00 0.00 3.95
3008 3409 3.188667 GTGTGCACTACTAGAAAAAGGGC 59.811 47.826 19.41 1.55 40.16 5.19
3009 3410 3.072476 TGTGCACTACTAGAAAAAGGGCT 59.928 43.478 19.41 0.00 40.40 5.19
3010 3411 4.285003 TGTGCACTACTAGAAAAAGGGCTA 59.715 41.667 19.41 0.00 40.40 3.93
3011 3412 5.045869 TGTGCACTACTAGAAAAAGGGCTAT 60.046 40.000 19.41 0.00 40.40 2.97
3012 3413 6.155565 TGTGCACTACTAGAAAAAGGGCTATA 59.844 38.462 19.41 0.00 40.40 1.31
3013 3414 6.702282 GTGCACTACTAGAAAAAGGGCTATAG 59.298 42.308 10.32 0.00 40.40 1.31
3014 3415 6.610020 TGCACTACTAGAAAAAGGGCTATAGA 59.390 38.462 3.21 0.00 40.40 1.98
3015 3416 7.290248 TGCACTACTAGAAAAAGGGCTATAGAT 59.710 37.037 3.21 0.00 40.40 1.98
3016 3417 7.600752 GCACTACTAGAAAAAGGGCTATAGATG 59.399 40.741 3.21 0.00 36.70 2.90
3017 3418 8.091449 CACTACTAGAAAAAGGGCTATAGATGG 58.909 40.741 3.21 0.00 0.00 3.51
3018 3419 6.441088 ACTAGAAAAAGGGCTATAGATGGG 57.559 41.667 3.21 0.00 0.00 4.00
3019 3420 6.151049 ACTAGAAAAAGGGCTATAGATGGGA 58.849 40.000 3.21 0.00 0.00 4.37
3020 3421 6.795000 ACTAGAAAAAGGGCTATAGATGGGAT 59.205 38.462 3.21 0.00 0.00 3.85
3021 3422 6.536684 AGAAAAAGGGCTATAGATGGGATT 57.463 37.500 3.21 0.00 0.00 3.01
3022 3423 6.310149 AGAAAAAGGGCTATAGATGGGATTG 58.690 40.000 3.21 0.00 0.00 2.67
3023 3424 5.930209 AAAAGGGCTATAGATGGGATTGA 57.070 39.130 3.21 0.00 0.00 2.57
3024 3425 4.917906 AAGGGCTATAGATGGGATTGAC 57.082 45.455 3.21 0.00 0.00 3.18
3025 3426 3.874316 AGGGCTATAGATGGGATTGACA 58.126 45.455 3.21 0.00 0.00 3.58
3026 3427 3.584848 AGGGCTATAGATGGGATTGACAC 59.415 47.826 3.21 0.00 0.00 3.67
3027 3428 3.584848 GGGCTATAGATGGGATTGACACT 59.415 47.826 3.21 0.00 0.00 3.55
3028 3429 4.777896 GGGCTATAGATGGGATTGACACTA 59.222 45.833 3.21 0.00 0.00 2.74
3029 3430 5.248477 GGGCTATAGATGGGATTGACACTAA 59.752 44.000 3.21 0.00 0.00 2.24
3030 3431 6.069963 GGGCTATAGATGGGATTGACACTAAT 60.070 42.308 3.21 0.00 0.00 1.73
3031 3432 6.820656 GGCTATAGATGGGATTGACACTAATG 59.179 42.308 3.21 0.00 0.00 1.90
3032 3433 6.820656 GCTATAGATGGGATTGACACTAATGG 59.179 42.308 3.21 0.00 0.00 3.16
3033 3434 3.825328 AGATGGGATTGACACTAATGGC 58.175 45.455 0.00 0.00 0.00 4.40
3034 3435 2.036958 TGGGATTGACACTAATGGCG 57.963 50.000 0.00 0.00 36.14 5.69
3035 3436 0.663153 GGGATTGACACTAATGGCGC 59.337 55.000 0.00 0.00 36.14 6.53
3036 3437 1.378531 GGATTGACACTAATGGCGCA 58.621 50.000 10.83 0.00 36.14 6.09
3037 3438 1.064060 GGATTGACACTAATGGCGCAC 59.936 52.381 10.83 0.00 36.14 5.34
3038 3439 1.064060 GATTGACACTAATGGCGCACC 59.936 52.381 10.83 0.00 36.14 5.01
3052 3453 3.716006 CACCAGACAAGCGGTGCG 61.716 66.667 0.00 0.00 45.77 5.34
3067 3468 4.106029 CGGTGCGCCATTAGTATATACT 57.894 45.455 19.07 19.07 36.14 2.12
3068 3469 5.239359 CGGTGCGCCATTAGTATATACTA 57.761 43.478 18.18 17.03 34.75 1.82
3081 3482 6.022163 AGTATATACTAATGACGCACCACC 57.978 41.667 13.88 0.00 34.13 4.61
3082 3483 5.773680 AGTATATACTAATGACGCACCACCT 59.226 40.000 13.88 0.00 34.13 4.00
3083 3484 3.906720 ATACTAATGACGCACCACCTT 57.093 42.857 0.00 0.00 0.00 3.50
3084 3485 2.094762 ACTAATGACGCACCACCTTC 57.905 50.000 0.00 0.00 0.00 3.46
3085 3486 1.623811 ACTAATGACGCACCACCTTCT 59.376 47.619 0.00 0.00 0.00 2.85
3086 3487 2.002586 CTAATGACGCACCACCTTCTG 58.997 52.381 0.00 0.00 0.00 3.02
3087 3488 0.396435 AATGACGCACCACCTTCTGA 59.604 50.000 0.00 0.00 0.00 3.27
3088 3489 0.615331 ATGACGCACCACCTTCTGAT 59.385 50.000 0.00 0.00 0.00 2.90
3089 3490 1.262417 TGACGCACCACCTTCTGATA 58.738 50.000 0.00 0.00 0.00 2.15
3090 3491 1.067142 TGACGCACCACCTTCTGATAC 60.067 52.381 0.00 0.00 0.00 2.24
3091 3492 0.108804 ACGCACCACCTTCTGATACG 60.109 55.000 0.00 0.00 0.00 3.06
3092 3493 1.421410 CGCACCACCTTCTGATACGC 61.421 60.000 0.00 0.00 0.00 4.42
3093 3494 1.090052 GCACCACCTTCTGATACGCC 61.090 60.000 0.00 0.00 0.00 5.68
3094 3495 0.249120 CACCACCTTCTGATACGCCA 59.751 55.000 0.00 0.00 0.00 5.69
3095 3496 1.134401 CACCACCTTCTGATACGCCAT 60.134 52.381 0.00 0.00 0.00 4.40
3096 3497 1.559682 ACCACCTTCTGATACGCCATT 59.440 47.619 0.00 0.00 0.00 3.16
3097 3498 2.769663 ACCACCTTCTGATACGCCATTA 59.230 45.455 0.00 0.00 0.00 1.90
3098 3499 3.181465 ACCACCTTCTGATACGCCATTAG 60.181 47.826 0.00 0.00 0.00 1.73
3099 3500 3.069586 CCACCTTCTGATACGCCATTAGA 59.930 47.826 0.00 0.00 0.00 2.10
3100 3501 4.302455 CACCTTCTGATACGCCATTAGAG 58.698 47.826 0.00 0.00 31.43 2.43
3101 3502 3.961408 ACCTTCTGATACGCCATTAGAGT 59.039 43.478 0.00 0.00 31.43 3.24
3102 3503 4.406003 ACCTTCTGATACGCCATTAGAGTT 59.594 41.667 0.00 0.00 31.43 3.01
3103 3504 4.747108 CCTTCTGATACGCCATTAGAGTTG 59.253 45.833 0.00 0.00 31.43 3.16
3104 3505 5.451937 CCTTCTGATACGCCATTAGAGTTGA 60.452 44.000 0.00 0.00 31.43 3.18
3105 3506 5.592104 TCTGATACGCCATTAGAGTTGAA 57.408 39.130 0.00 0.00 0.00 2.69
3106 3507 5.972935 TCTGATACGCCATTAGAGTTGAAA 58.027 37.500 0.00 0.00 0.00 2.69
3107 3508 5.810587 TCTGATACGCCATTAGAGTTGAAAC 59.189 40.000 0.00 0.00 0.00 2.78
3108 3509 5.730550 TGATACGCCATTAGAGTTGAAACT 58.269 37.500 0.00 0.00 43.16 2.66
3109 3510 6.869695 TGATACGCCATTAGAGTTGAAACTA 58.130 36.000 0.00 0.00 39.88 2.24
3110 3511 6.755141 TGATACGCCATTAGAGTTGAAACTAC 59.245 38.462 0.00 0.00 39.88 2.73
3111 3512 5.148651 ACGCCATTAGAGTTGAAACTACT 57.851 39.130 0.00 0.00 39.88 2.57
3112 3513 6.276832 ACGCCATTAGAGTTGAAACTACTA 57.723 37.500 0.00 0.00 39.88 1.82
3113 3514 6.694447 ACGCCATTAGAGTTGAAACTACTAA 58.306 36.000 12.97 12.97 39.88 2.24
3114 3515 7.328737 ACGCCATTAGAGTTGAAACTACTAAT 58.671 34.615 15.03 15.03 39.88 1.73
3115 3516 7.277981 ACGCCATTAGAGTTGAAACTACTAATG 59.722 37.037 25.60 25.60 44.21 1.90
3118 3519 7.621991 CATTAGAGTTGAAACTACTAATGGCG 58.378 38.462 25.29 14.16 43.04 5.69
3119 3520 3.933332 AGAGTTGAAACTACTAATGGCGC 59.067 43.478 0.00 0.00 39.88 6.53
3120 3521 3.670625 AGTTGAAACTACTAATGGCGCA 58.329 40.909 10.83 0.00 37.52 6.09
3121 3522 3.684788 AGTTGAAACTACTAATGGCGCAG 59.315 43.478 10.83 0.00 37.52 5.18
3122 3523 2.627945 TGAAACTACTAATGGCGCAGG 58.372 47.619 10.83 0.00 0.00 4.85
3123 3524 1.940613 GAAACTACTAATGGCGCAGGG 59.059 52.381 10.83 0.00 0.00 4.45
3124 3525 0.909623 AACTACTAATGGCGCAGGGT 59.090 50.000 10.83 2.75 0.00 4.34
3125 3526 0.178068 ACTACTAATGGCGCAGGGTG 59.822 55.000 10.83 0.00 0.00 4.61
3126 3527 1.153249 TACTAATGGCGCAGGGTGC 60.153 57.895 10.83 0.00 40.69 5.01
3135 3536 2.438434 GCAGGGTGCGCCATTAGT 60.438 61.111 19.98 0.00 36.17 2.24
3136 3537 1.153249 GCAGGGTGCGCCATTAGTA 60.153 57.895 19.98 0.00 36.17 1.82
3137 3538 0.535102 GCAGGGTGCGCCATTAGTAT 60.535 55.000 19.98 0.00 36.17 2.12
3138 3539 1.512926 CAGGGTGCGCCATTAGTATC 58.487 55.000 19.98 0.00 36.17 2.24
3139 3540 1.128200 AGGGTGCGCCATTAGTATCA 58.872 50.000 19.98 0.00 36.17 2.15
3140 3541 1.488812 AGGGTGCGCCATTAGTATCAA 59.511 47.619 19.98 0.00 36.17 2.57
3141 3542 2.092646 AGGGTGCGCCATTAGTATCAAA 60.093 45.455 19.98 0.00 36.17 2.69
3142 3543 2.685897 GGGTGCGCCATTAGTATCAAAA 59.314 45.455 19.98 0.00 36.17 2.44
3143 3544 3.129638 GGGTGCGCCATTAGTATCAAAAA 59.870 43.478 19.98 0.00 36.17 1.94
3165 3566 4.680171 AAAATTAACTAGTGCGCCTGTC 57.320 40.909 4.18 0.00 0.00 3.51
3166 3567 2.311124 ATTAACTAGTGCGCCTGTCC 57.689 50.000 4.18 0.00 0.00 4.02
3167 3568 0.970640 TTAACTAGTGCGCCTGTCCA 59.029 50.000 4.18 0.00 0.00 4.02
3168 3569 0.970640 TAACTAGTGCGCCTGTCCAA 59.029 50.000 4.18 0.00 0.00 3.53
3169 3570 0.107831 AACTAGTGCGCCTGTCCAAA 59.892 50.000 4.18 0.00 0.00 3.28
3170 3571 0.602905 ACTAGTGCGCCTGTCCAAAC 60.603 55.000 4.18 0.00 0.00 2.93
3171 3572 0.602638 CTAGTGCGCCTGTCCAAACA 60.603 55.000 4.18 0.00 0.00 2.83
3172 3573 0.036164 TAGTGCGCCTGTCCAAACAT 59.964 50.000 4.18 0.00 34.13 2.71
3173 3574 0.036164 AGTGCGCCTGTCCAAACATA 59.964 50.000 4.18 0.00 34.13 2.29
3174 3575 0.168128 GTGCGCCTGTCCAAACATAC 59.832 55.000 4.18 0.00 34.13 2.39
3175 3576 0.036164 TGCGCCTGTCCAAACATACT 59.964 50.000 4.18 0.00 34.13 2.12
3176 3577 1.276705 TGCGCCTGTCCAAACATACTA 59.723 47.619 4.18 0.00 34.13 1.82
3177 3578 2.289756 TGCGCCTGTCCAAACATACTAA 60.290 45.455 4.18 0.00 34.13 2.24
3178 3579 2.943033 GCGCCTGTCCAAACATACTAAT 59.057 45.455 0.00 0.00 34.13 1.73
3179 3580 3.242739 GCGCCTGTCCAAACATACTAATG 60.243 47.826 0.00 0.00 39.17 1.90
3180 3581 3.312421 CGCCTGTCCAAACATACTAATGG 59.688 47.826 0.00 0.00 37.43 3.16
3181 3582 3.066760 GCCTGTCCAAACATACTAATGGC 59.933 47.826 0.00 0.00 37.43 4.40
3182 3583 3.312421 CCTGTCCAAACATACTAATGGCG 59.688 47.826 0.00 0.00 37.43 5.69
3183 3584 2.680841 TGTCCAAACATACTAATGGCGC 59.319 45.455 0.00 0.00 37.43 6.53
3184 3585 2.680841 GTCCAAACATACTAATGGCGCA 59.319 45.455 10.83 0.00 37.43 6.09
3185 3586 3.315191 GTCCAAACATACTAATGGCGCAT 59.685 43.478 10.83 0.00 37.43 4.73
3186 3587 3.563808 TCCAAACATACTAATGGCGCATC 59.436 43.478 10.83 0.00 37.43 3.91
3187 3588 3.304659 CCAAACATACTAATGGCGCATCC 60.305 47.826 10.83 0.00 37.43 3.51
3195 3596 2.046988 TGGCGCATCCAGACACAG 60.047 61.111 10.83 0.00 40.72 3.66
3196 3597 2.046892 GGCGCATCCAGACACAGT 60.047 61.111 10.83 0.00 34.01 3.55
3197 3598 2.393768 GGCGCATCCAGACACAGTG 61.394 63.158 10.83 0.00 34.01 3.66
3198 3599 3.031964 GCGCATCCAGACACAGTGC 62.032 63.158 0.30 0.00 0.00 4.40
3199 3600 3.171987 GCATCCAGACACAGTGCG 58.828 61.111 0.00 0.00 0.00 5.34
3200 3601 3.031964 GCATCCAGACACAGTGCGC 62.032 63.158 0.00 0.00 0.00 6.09
3201 3602 2.046892 ATCCAGACACAGTGCGCC 60.047 61.111 4.18 0.00 0.00 6.53
3202 3603 2.882677 ATCCAGACACAGTGCGCCA 61.883 57.895 4.18 0.00 0.00 5.69
3203 3604 2.189191 ATCCAGACACAGTGCGCCAT 62.189 55.000 4.18 0.00 0.00 4.40
3204 3605 1.968017 CCAGACACAGTGCGCCATT 60.968 57.895 4.18 0.00 0.00 3.16
3205 3606 0.673333 CCAGACACAGTGCGCCATTA 60.673 55.000 4.18 0.00 0.00 1.90
3206 3607 0.443869 CAGACACAGTGCGCCATTAC 59.556 55.000 4.18 0.00 0.00 1.89
3207 3608 0.321671 AGACACAGTGCGCCATTACT 59.678 50.000 4.18 0.00 0.00 2.24
3208 3609 1.548719 AGACACAGTGCGCCATTACTA 59.451 47.619 4.18 0.00 0.00 1.82
3209 3610 1.927174 GACACAGTGCGCCATTACTAG 59.073 52.381 4.18 0.30 0.00 2.57
3210 3611 1.275291 ACACAGTGCGCCATTACTAGT 59.725 47.619 4.18 0.00 0.00 2.57
3211 3612 2.289444 ACACAGTGCGCCATTACTAGTT 60.289 45.455 4.18 0.00 0.00 2.24
3212 3613 2.094258 CACAGTGCGCCATTACTAGTTG 59.906 50.000 4.18 0.00 0.00 3.16
3213 3614 2.289444 ACAGTGCGCCATTACTAGTTGT 60.289 45.455 4.18 0.00 0.00 3.32
3214 3615 3.056393 ACAGTGCGCCATTACTAGTTGTA 60.056 43.478 4.18 0.00 0.00 2.41
3215 3616 3.930229 CAGTGCGCCATTACTAGTTGTAA 59.070 43.478 4.18 0.00 44.22 2.41
3216 3617 3.930848 AGTGCGCCATTACTAGTTGTAAC 59.069 43.478 4.18 0.00 43.08 2.50
3217 3618 3.930848 GTGCGCCATTACTAGTTGTAACT 59.069 43.478 4.18 2.51 43.08 2.24
3218 3619 5.104374 GTGCGCCATTACTAGTTGTAACTA 58.896 41.667 4.18 4.57 43.08 2.24
3229 3630 4.196626 AGTTGTAACTAGTAATGGCGCA 57.803 40.909 10.83 0.00 37.52 6.09
3230 3631 3.930848 AGTTGTAACTAGTAATGGCGCAC 59.069 43.478 10.83 0.00 37.52 5.34
3231 3632 2.896168 TGTAACTAGTAATGGCGCACC 58.104 47.619 10.83 0.00 0.00 5.01
3232 3633 2.498481 TGTAACTAGTAATGGCGCACCT 59.502 45.455 10.83 0.00 36.63 4.00
3233 3634 2.024176 AACTAGTAATGGCGCACCTG 57.976 50.000 10.83 0.00 36.63 4.00
3234 3635 0.178068 ACTAGTAATGGCGCACCTGG 59.822 55.000 10.83 1.20 36.63 4.45
3235 3636 1.153249 TAGTAATGGCGCACCTGGC 60.153 57.895 10.83 0.00 36.63 4.85
3251 3652 4.813235 GCCCAGGGTGCGCCATTA 62.813 66.667 19.98 0.00 36.17 1.90
3252 3653 2.516930 CCCAGGGTGCGCCATTAG 60.517 66.667 19.98 4.58 36.17 1.73
3253 3654 2.272146 CCAGGGTGCGCCATTAGT 59.728 61.111 19.98 0.00 36.17 2.24
3254 3655 1.524961 CCAGGGTGCGCCATTAGTA 59.475 57.895 19.98 0.00 36.17 1.82
3255 3656 0.108585 CCAGGGTGCGCCATTAGTAT 59.891 55.000 19.98 0.00 36.17 2.12
3256 3657 1.512926 CAGGGTGCGCCATTAGTATC 58.487 55.000 19.98 0.00 36.17 2.24
3257 3658 1.128200 AGGGTGCGCCATTAGTATCA 58.872 50.000 19.98 0.00 36.17 2.15
3258 3659 1.488812 AGGGTGCGCCATTAGTATCAA 59.511 47.619 19.98 0.00 36.17 2.57
3259 3660 2.092646 AGGGTGCGCCATTAGTATCAAA 60.093 45.455 19.98 0.00 36.17 2.69
3260 3661 2.685897 GGGTGCGCCATTAGTATCAAAA 59.314 45.455 19.98 0.00 36.17 2.44
3261 3662 3.129638 GGGTGCGCCATTAGTATCAAAAA 59.870 43.478 19.98 0.00 36.17 1.94
3283 3684 5.447624 AAAAATTTAACTAGTGCGCCTGT 57.552 34.783 4.18 0.00 0.00 4.00
3284 3685 4.680171 AAATTTAACTAGTGCGCCTGTC 57.320 40.909 4.18 0.00 0.00 3.51
3285 3686 2.088950 TTTAACTAGTGCGCCTGTCC 57.911 50.000 4.18 0.00 0.00 4.02
3286 3687 0.970640 TTAACTAGTGCGCCTGTCCA 59.029 50.000 4.18 0.00 0.00 4.02
3287 3688 0.970640 TAACTAGTGCGCCTGTCCAA 59.029 50.000 4.18 0.00 0.00 3.53
3288 3689 0.107831 AACTAGTGCGCCTGTCCAAA 59.892 50.000 4.18 0.00 0.00 3.28
3289 3690 0.602905 ACTAGTGCGCCTGTCCAAAC 60.603 55.000 4.18 0.00 0.00 2.93
3290 3691 0.602638 CTAGTGCGCCTGTCCAAACA 60.603 55.000 4.18 0.00 0.00 2.83
3291 3692 0.036164 TAGTGCGCCTGTCCAAACAT 59.964 50.000 4.18 0.00 34.13 2.71
3292 3693 0.036164 AGTGCGCCTGTCCAAACATA 59.964 50.000 4.18 0.00 34.13 2.29
3293 3694 0.168128 GTGCGCCTGTCCAAACATAC 59.832 55.000 4.18 0.00 34.13 2.39
3294 3695 0.036164 TGCGCCTGTCCAAACATACT 59.964 50.000 4.18 0.00 34.13 2.12
3295 3696 1.165270 GCGCCTGTCCAAACATACTT 58.835 50.000 0.00 0.00 34.13 2.24
3296 3697 2.289756 TGCGCCTGTCCAAACATACTTA 60.290 45.455 4.18 0.00 34.13 2.24
3297 3698 2.943033 GCGCCTGTCCAAACATACTTAT 59.057 45.455 0.00 0.00 34.13 1.73
3298 3699 3.242739 GCGCCTGTCCAAACATACTTATG 60.243 47.826 0.00 0.00 39.55 1.90
3299 3700 3.312421 CGCCTGTCCAAACATACTTATGG 59.688 47.826 1.43 0.00 38.00 2.74
3300 3701 3.066760 GCCTGTCCAAACATACTTATGGC 59.933 47.826 1.43 0.00 38.00 4.40
3301 3702 3.312421 CCTGTCCAAACATACTTATGGCG 59.688 47.826 1.43 0.00 38.00 5.69
3302 3703 2.680841 TGTCCAAACATACTTATGGCGC 59.319 45.455 0.00 0.00 38.00 6.53
3303 3704 2.680841 GTCCAAACATACTTATGGCGCA 59.319 45.455 10.83 0.00 38.00 6.09
3304 3705 3.315191 GTCCAAACATACTTATGGCGCAT 59.685 43.478 10.83 3.40 38.00 4.73
3305 3706 3.563808 TCCAAACATACTTATGGCGCATC 59.436 43.478 10.83 0.00 38.00 3.91
3306 3707 3.304659 CCAAACATACTTATGGCGCATCC 60.305 47.826 10.83 0.00 38.00 3.51
3314 3715 2.046988 TGGCGCATCCAGACACAG 60.047 61.111 10.83 0.00 40.72 3.66
3315 3716 2.046892 GGCGCATCCAGACACAGT 60.047 61.111 10.83 0.00 34.01 3.55
3316 3717 2.393768 GGCGCATCCAGACACAGTG 61.394 63.158 10.83 0.00 34.01 3.66
3317 3718 3.031964 GCGCATCCAGACACAGTGC 62.032 63.158 0.30 0.00 0.00 4.40
3318 3719 3.171987 GCATCCAGACACAGTGCG 58.828 61.111 0.00 0.00 0.00 5.34
3319 3720 3.031964 GCATCCAGACACAGTGCGC 62.032 63.158 0.00 0.00 0.00 6.09
3320 3721 2.046892 ATCCAGACACAGTGCGCC 60.047 61.111 4.18 0.00 0.00 6.53
3321 3722 2.882677 ATCCAGACACAGTGCGCCA 61.883 57.895 4.18 0.00 0.00 5.69
3322 3723 2.189191 ATCCAGACACAGTGCGCCAT 62.189 55.000 4.18 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.259167 GCGGGTACATATACATTTTCTTGTGA 59.741 38.462 0.00 0.00 32.40 3.58
5 6 7.633193 TTTTGCGGGTACATATACATTTTCT 57.367 32.000 0.00 0.00 32.40 2.52
53 55 7.639039 TGTTTTCTGTAAAAGCAGAGTACATG 58.361 34.615 0.00 0.00 45.03 3.21
79 81 1.756333 GCTTCCCTACTCCTCCTCCTC 60.756 61.905 0.00 0.00 0.00 3.71
80 82 0.263468 GCTTCCCTACTCCTCCTCCT 59.737 60.000 0.00 0.00 0.00 3.69
81 83 0.032017 TGCTTCCCTACTCCTCCTCC 60.032 60.000 0.00 0.00 0.00 4.30
82 84 1.408969 CTGCTTCCCTACTCCTCCTC 58.591 60.000 0.00 0.00 0.00 3.71
83 85 0.689412 GCTGCTTCCCTACTCCTCCT 60.689 60.000 0.00 0.00 0.00 3.69
84 86 0.978146 TGCTGCTTCCCTACTCCTCC 60.978 60.000 0.00 0.00 0.00 4.30
92 94 4.711949 CCTGCGTGCTGCTTCCCT 62.712 66.667 0.00 0.00 46.63 4.20
125 127 2.675844 CCAAATTGACGTCGCATTAGGA 59.324 45.455 11.62 0.00 0.00 2.94
127 129 2.791158 GCCCAAATTGACGTCGCATTAG 60.791 50.000 11.62 7.06 0.00 1.73
128 130 1.131504 GCCCAAATTGACGTCGCATTA 59.868 47.619 11.62 0.00 0.00 1.90
130 132 1.506262 GCCCAAATTGACGTCGCAT 59.494 52.632 11.62 2.40 0.00 4.73
131 133 2.622011 GGCCCAAATTGACGTCGCA 61.622 57.895 11.62 0.00 0.00 5.10
132 134 2.178273 GGCCCAAATTGACGTCGC 59.822 61.111 11.62 5.93 0.00 5.19
139 141 3.428862 GGATTGAGTTACGGCCCAAATTG 60.429 47.826 0.00 0.00 0.00 2.32
169 171 2.628657 GTCGGTATCTCATGGCTTAGGT 59.371 50.000 0.00 0.00 0.00 3.08
202 204 8.159229 AGAGGTTTGGTATTAATAACAGGAGT 57.841 34.615 12.81 1.07 30.57 3.85
203 205 8.265055 TGAGAGGTTTGGTATTAATAACAGGAG 58.735 37.037 12.81 0.00 30.57 3.69
204 206 8.153221 TGAGAGGTTTGGTATTAATAACAGGA 57.847 34.615 12.81 4.29 30.57 3.86
205 207 7.012421 GCTGAGAGGTTTGGTATTAATAACAGG 59.988 40.741 12.81 0.00 30.57 4.00
206 208 7.012421 GGCTGAGAGGTTTGGTATTAATAACAG 59.988 40.741 12.81 0.63 30.57 3.16
209 211 7.208064 AGGCTGAGAGGTTTGGTATTAATAA 57.792 36.000 0.00 0.00 0.00 1.40
223 225 1.299773 GCGATTCGAGGCTGAGAGG 60.300 63.158 10.88 0.00 0.00 3.69
236 238 2.609459 GTGACGATGGAAGATTGCGATT 59.391 45.455 0.00 0.00 0.00 3.34
243 245 3.000727 GGTTTTCGTGACGATGGAAGAT 58.999 45.455 9.08 0.00 35.23 2.40
251 253 0.875474 GGGTTCGGTTTTCGTGACGA 60.875 55.000 2.39 2.39 40.32 4.20
254 256 2.246042 GCGGGTTCGGTTTTCGTGA 61.246 57.895 0.00 0.00 40.32 4.35
291 293 0.678048 GCTGCTAGGGTTTGGAGGTG 60.678 60.000 0.00 0.00 0.00 4.00
1383 1718 4.113815 TCCAGGGCCTTGCGGATG 62.114 66.667 9.90 0.00 0.00 3.51
1974 2311 0.109873 CGCTGTAGACGAAGACGGTT 60.110 55.000 0.00 0.00 44.46 4.44
1986 2323 1.550065 CGAACTCCATGTCGCTGTAG 58.450 55.000 0.00 0.00 0.00 2.74
2118 2479 4.579384 AACACCACCTGGGGCACG 62.579 66.667 0.00 0.00 44.30 5.34
2199 2560 1.630244 CGTTCTTGGAGAAGCCGCTG 61.630 60.000 0.00 0.00 40.66 5.18
2253 2614 1.825191 CATGATGGCCTCGGGGTTG 60.825 63.158 1.62 0.00 34.45 3.77
2286 2647 1.880894 CTTCTGGTACTCGTCGCCA 59.119 57.895 0.00 0.00 0.00 5.69
2325 2686 9.179909 GGGATCGATCTATCTAATCTAACAAGA 57.820 37.037 23.96 0.00 0.00 3.02
2326 2687 8.961634 TGGGATCGATCTATCTAATCTAACAAG 58.038 37.037 23.96 0.00 0.00 3.16
2335 2696 9.976776 AACTAAGTATGGGATCGATCTATCTAA 57.023 33.333 23.96 5.25 0.00 2.10
2336 2697 9.616156 GAACTAAGTATGGGATCGATCTATCTA 57.384 37.037 23.96 6.99 0.00 1.98
2337 2698 7.281324 CGAACTAAGTATGGGATCGATCTATCT 59.719 40.741 23.96 12.65 0.00 1.98
2338 2699 7.066043 ACGAACTAAGTATGGGATCGATCTATC 59.934 40.741 23.96 14.35 33.42 2.08
2339 2700 6.885376 ACGAACTAAGTATGGGATCGATCTAT 59.115 38.462 23.96 19.43 33.42 1.98
2352 2713 6.680874 AGAGAATCGTCACGAACTAAGTAT 57.319 37.500 2.76 0.00 42.67 2.12
2365 2726 5.231147 GCATGAGTTCAACTAGAGAATCGTC 59.769 44.000 0.00 0.84 42.67 4.20
2366 2727 5.105752 GCATGAGTTCAACTAGAGAATCGT 58.894 41.667 0.00 0.31 42.67 3.73
2379 2750 0.324614 ATCACCACGGCATGAGTTCA 59.675 50.000 0.00 0.00 0.00 3.18
2380 2751 1.131126 CAATCACCACGGCATGAGTTC 59.869 52.381 0.00 0.00 0.00 3.01
2382 2753 0.677731 CCAATCACCACGGCATGAGT 60.678 55.000 0.00 0.00 0.00 3.41
2383 2754 0.677731 ACCAATCACCACGGCATGAG 60.678 55.000 0.00 0.00 0.00 2.90
2384 2755 0.676466 GACCAATCACCACGGCATGA 60.676 55.000 0.00 0.00 0.00 3.07
2385 2756 0.959867 TGACCAATCACCACGGCATG 60.960 55.000 0.00 0.00 0.00 4.06
2387 2758 1.302431 CTGACCAATCACCACGGCA 60.302 57.895 0.00 0.00 0.00 5.69
2388 2759 0.889186 AACTGACCAATCACCACGGC 60.889 55.000 0.00 0.00 0.00 5.68
2389 2760 0.874390 CAACTGACCAATCACCACGG 59.126 55.000 0.00 0.00 0.00 4.94
2396 2784 3.733443 AAACAAGCCAACTGACCAATC 57.267 42.857 0.00 0.00 0.00 2.67
2403 2791 2.951642 TCCAGAGAAAACAAGCCAACTG 59.048 45.455 0.00 0.00 0.00 3.16
2406 2794 3.243839 GCAATCCAGAGAAAACAAGCCAA 60.244 43.478 0.00 0.00 0.00 4.52
2413 2801 5.895216 CAAGTTTGCAATCCAGAGAAAAC 57.105 39.130 0.00 0.00 0.00 2.43
2428 2816 3.059325 CCGAGTTCAGAGAAGCAAGTTTG 60.059 47.826 0.00 0.00 0.00 2.93
2430 2818 2.103263 ACCGAGTTCAGAGAAGCAAGTT 59.897 45.455 0.00 0.00 0.00 2.66
2431 2819 1.689273 ACCGAGTTCAGAGAAGCAAGT 59.311 47.619 0.00 0.00 0.00 3.16
2432 2820 2.064762 CACCGAGTTCAGAGAAGCAAG 58.935 52.381 0.00 0.00 0.00 4.01
2433 2821 1.270305 CCACCGAGTTCAGAGAAGCAA 60.270 52.381 0.00 0.00 0.00 3.91
2475 2863 6.589830 ATCGAACTCAAATCCTACGAAATG 57.410 37.500 0.00 0.00 32.48 2.32
2507 2895 9.664332 ATTGAACATCAGGCTGTATATAGAATC 57.336 33.333 15.27 3.15 0.00 2.52
2509 2897 9.276590 CAATTGAACATCAGGCTGTATATAGAA 57.723 33.333 15.27 1.57 0.00 2.10
2510 2898 7.388776 GCAATTGAACATCAGGCTGTATATAGA 59.611 37.037 15.27 0.00 0.00 1.98
2511 2899 7.389884 AGCAATTGAACATCAGGCTGTATATAG 59.610 37.037 15.27 2.13 31.89 1.31
2530 2918 4.057406 TCAGGGTTTCAAACAGCAATTG 57.943 40.909 1.93 0.00 0.00 2.32
2553 2941 4.834496 TGGTTGCAATTCAGAAAAGAGGAT 59.166 37.500 0.59 0.00 0.00 3.24
2554 2942 4.214310 TGGTTGCAATTCAGAAAAGAGGA 58.786 39.130 0.59 0.00 0.00 3.71
2561 2949 2.629137 AGCACATGGTTGCAATTCAGAA 59.371 40.909 0.59 0.00 45.62 3.02
2562 2950 2.241160 AGCACATGGTTGCAATTCAGA 58.759 42.857 0.59 0.00 45.62 3.27
2563 2951 2.736144 AGCACATGGTTGCAATTCAG 57.264 45.000 0.59 0.00 45.62 3.02
2564 2952 3.069872 AGAAAGCACATGGTTGCAATTCA 59.930 39.130 19.60 5.08 45.62 2.57
2565 2953 3.656559 AGAAAGCACATGGTTGCAATTC 58.343 40.909 0.59 12.63 45.62 2.17
2566 2954 3.322828 AGAGAAAGCACATGGTTGCAATT 59.677 39.130 0.59 5.34 45.62 2.32
2567 2955 2.895404 AGAGAAAGCACATGGTTGCAAT 59.105 40.909 0.59 0.00 45.62 3.56
2568 2956 2.034939 CAGAGAAAGCACATGGTTGCAA 59.965 45.455 10.57 0.00 45.62 4.08
2569 2957 1.610038 CAGAGAAAGCACATGGTTGCA 59.390 47.619 10.57 0.00 45.62 4.08
2570 2958 1.881973 TCAGAGAAAGCACATGGTTGC 59.118 47.619 0.00 0.00 43.34 4.17
2571 2959 4.778534 ATTCAGAGAAAGCACATGGTTG 57.221 40.909 0.00 0.00 35.72 3.77
2572 2960 5.048224 CAGAATTCAGAGAAAGCACATGGTT 60.048 40.000 8.44 0.00 37.35 3.67
2573 2961 4.458295 CAGAATTCAGAGAAAGCACATGGT 59.542 41.667 8.44 0.00 0.00 3.55
2574 2962 4.458295 ACAGAATTCAGAGAAAGCACATGG 59.542 41.667 8.44 0.00 0.00 3.66
2575 2963 5.411977 AGACAGAATTCAGAGAAAGCACATG 59.588 40.000 8.44 0.00 0.00 3.21
2576 2964 5.558818 AGACAGAATTCAGAGAAAGCACAT 58.441 37.500 8.44 0.00 0.00 3.21
2577 2965 4.965814 AGACAGAATTCAGAGAAAGCACA 58.034 39.130 8.44 0.00 0.00 4.57
2578 2966 5.237048 AGAGACAGAATTCAGAGAAAGCAC 58.763 41.667 8.44 0.00 0.00 4.40
2579 2967 5.480642 AGAGACAGAATTCAGAGAAAGCA 57.519 39.130 8.44 0.00 0.00 3.91
2580 2968 6.799926 AAAGAGACAGAATTCAGAGAAAGC 57.200 37.500 8.44 0.00 0.00 3.51
2581 2969 7.170658 ACGAAAAGAGACAGAATTCAGAGAAAG 59.829 37.037 8.44 0.00 0.00 2.62
2582 2970 6.986817 ACGAAAAGAGACAGAATTCAGAGAAA 59.013 34.615 8.44 0.00 0.00 2.52
2583 2971 6.516718 ACGAAAAGAGACAGAATTCAGAGAA 58.483 36.000 8.44 0.00 0.00 2.87
2584 2972 6.090483 ACGAAAAGAGACAGAATTCAGAGA 57.910 37.500 8.44 0.00 0.00 3.10
2585 2973 6.777526 AACGAAAAGAGACAGAATTCAGAG 57.222 37.500 8.44 0.00 0.00 3.35
2624 3012 3.782523 ACCAATCATATCAGTCACCAGGT 59.217 43.478 0.00 0.00 0.00 4.00
2649 3047 4.652421 AGAAATATCCGGTAACTAGCACCA 59.348 41.667 13.13 0.00 35.67 4.17
2724 3122 8.626526 ACGTACCATATTATTGTTTCATTTCCC 58.373 33.333 0.00 0.00 0.00 3.97
2752 3153 5.633601 GCCTTCTTTGTGCAAGGTTAATAAC 59.366 40.000 1.98 0.00 41.31 1.89
2766 3167 0.385390 CCAAACGCAGCCTTCTTTGT 59.615 50.000 0.00 0.00 0.00 2.83
2778 3179 0.809636 AAAACCTTGCTGCCAAACGC 60.810 50.000 0.00 0.00 38.31 4.84
2779 3180 1.650825 AAAAACCTTGCTGCCAAACG 58.349 45.000 0.00 0.00 0.00 3.60
2797 3198 9.352784 CCGCAATATTATCAGAAAACTTTGAAA 57.647 29.630 0.00 0.00 0.00 2.69
2798 3199 8.519526 ACCGCAATATTATCAGAAAACTTTGAA 58.480 29.630 0.00 0.00 0.00 2.69
2799 3200 8.050778 ACCGCAATATTATCAGAAAACTTTGA 57.949 30.769 0.00 0.00 0.00 2.69
2800 3201 8.687824 AACCGCAATATTATCAGAAAACTTTG 57.312 30.769 0.00 0.00 0.00 2.77
2801 3202 9.139174 CAAACCGCAATATTATCAGAAAACTTT 57.861 29.630 0.00 0.00 0.00 2.66
2802 3203 8.303876 ACAAACCGCAATATTATCAGAAAACTT 58.696 29.630 0.00 0.00 0.00 2.66
2803 3204 7.826690 ACAAACCGCAATATTATCAGAAAACT 58.173 30.769 0.00 0.00 0.00 2.66
2804 3205 9.562583 TTACAAACCGCAATATTATCAGAAAAC 57.437 29.630 0.00 0.00 0.00 2.43
2831 3232 2.096119 CGTTATCGGCGTCCTTGTTTTT 60.096 45.455 6.85 0.00 0.00 1.94
2832 3233 1.461897 CGTTATCGGCGTCCTTGTTTT 59.538 47.619 6.85 0.00 0.00 2.43
2833 3234 1.073177 CGTTATCGGCGTCCTTGTTT 58.927 50.000 6.85 0.00 0.00 2.83
2834 3235 0.037975 ACGTTATCGGCGTCCTTGTT 60.038 50.000 6.85 0.00 38.23 2.83
2835 3236 0.734942 CACGTTATCGGCGTCCTTGT 60.735 55.000 6.85 0.00 40.90 3.16
2836 3237 0.734942 ACACGTTATCGGCGTCCTTG 60.735 55.000 6.85 0.60 40.90 3.61
2837 3238 0.734942 CACACGTTATCGGCGTCCTT 60.735 55.000 6.85 0.00 40.90 3.36
2838 3239 1.153901 CACACGTTATCGGCGTCCT 60.154 57.895 6.85 0.00 40.90 3.85
2839 3240 2.162754 CCACACGTTATCGGCGTCC 61.163 63.158 6.85 0.00 40.90 4.79
2840 3241 2.162754 CCCACACGTTATCGGCGTC 61.163 63.158 6.85 0.00 40.90 5.19
2841 3242 2.125832 CCCACACGTTATCGGCGT 60.126 61.111 6.85 0.00 43.90 5.68
2842 3243 3.560278 GCCCACACGTTATCGGCG 61.560 66.667 0.00 0.00 41.85 6.46
2843 3244 3.560278 CGCCCACACGTTATCGGC 61.560 66.667 3.21 3.21 41.85 5.54
2844 3245 2.125832 ACGCCCACACGTTATCGG 60.126 61.111 0.00 0.00 45.75 4.18
2851 3252 1.078708 ATCCCTTAACGCCCACACG 60.079 57.895 0.00 0.00 39.50 4.49
2852 3253 0.252197 AGATCCCTTAACGCCCACAC 59.748 55.000 0.00 0.00 0.00 3.82
2853 3254 0.251916 CAGATCCCTTAACGCCCACA 59.748 55.000 0.00 0.00 0.00 4.17
2854 3255 1.095807 GCAGATCCCTTAACGCCCAC 61.096 60.000 0.00 0.00 0.00 4.61
2855 3256 1.223487 GCAGATCCCTTAACGCCCA 59.777 57.895 0.00 0.00 0.00 5.36
2856 3257 1.526225 GGCAGATCCCTTAACGCCC 60.526 63.158 0.00 0.00 33.31 6.13
2857 3258 4.142780 GGCAGATCCCTTAACGCC 57.857 61.111 0.00 0.00 0.00 5.68
2866 3267 1.386533 CAGAATGTGTGGGCAGATCC 58.613 55.000 0.00 0.00 0.00 3.36
2879 3280 3.005554 CTCTTAGGCACCACACAGAATG 58.994 50.000 0.00 0.00 46.00 2.67
2880 3281 2.026822 CCTCTTAGGCACCACACAGAAT 60.027 50.000 0.00 0.00 0.00 2.40
2881 3282 1.347707 CCTCTTAGGCACCACACAGAA 59.652 52.381 0.00 0.00 0.00 3.02
2882 3283 0.976641 CCTCTTAGGCACCACACAGA 59.023 55.000 0.00 0.00 0.00 3.41
2883 3284 0.976641 TCCTCTTAGGCACCACACAG 59.023 55.000 0.00 0.00 34.61 3.66
2884 3285 0.685097 GTCCTCTTAGGCACCACACA 59.315 55.000 0.00 0.00 34.61 3.72
2885 3286 0.036294 GGTCCTCTTAGGCACCACAC 60.036 60.000 8.72 0.00 36.33 3.82
2886 3287 0.472925 TGGTCCTCTTAGGCACCACA 60.473 55.000 11.10 0.00 39.21 4.17
2887 3288 0.250513 CTGGTCCTCTTAGGCACCAC 59.749 60.000 11.10 0.00 39.21 4.16
2888 3289 1.553690 GCTGGTCCTCTTAGGCACCA 61.554 60.000 13.28 13.28 40.68 4.17
2889 3290 1.222113 GCTGGTCCTCTTAGGCACC 59.778 63.158 7.32 7.32 36.63 5.01
2890 3291 1.222113 GGCTGGTCCTCTTAGGCAC 59.778 63.158 0.00 0.00 34.61 5.01
2891 3292 1.995626 GGGCTGGTCCTCTTAGGCA 60.996 63.158 0.00 0.00 38.60 4.75
2892 3293 1.995626 TGGGCTGGTCCTCTTAGGC 60.996 63.158 0.00 0.00 34.61 3.93
2893 3294 0.909610 TGTGGGCTGGTCCTCTTAGG 60.910 60.000 0.00 0.00 36.46 2.69
2894 3295 0.250513 GTGTGGGCTGGTCCTCTTAG 59.749 60.000 0.00 0.00 34.39 2.18
2895 3296 1.541310 CGTGTGGGCTGGTCCTCTTA 61.541 60.000 0.00 0.00 34.39 2.10
2896 3297 2.883828 CGTGTGGGCTGGTCCTCTT 61.884 63.158 0.00 0.00 34.39 2.85
2897 3298 3.314331 CGTGTGGGCTGGTCCTCT 61.314 66.667 0.00 0.00 34.39 3.69
2900 3301 4.643387 AAGCGTGTGGGCTGGTCC 62.643 66.667 0.00 0.00 43.93 4.46
2901 3302 3.357079 CAAGCGTGTGGGCTGGTC 61.357 66.667 0.00 0.00 43.93 4.02
2902 3303 4.189580 ACAAGCGTGTGGGCTGGT 62.190 61.111 3.91 0.00 43.93 4.00
2912 3313 1.599606 TTTTGCCCACACACAAGCGT 61.600 50.000 0.00 0.00 0.00 5.07
2913 3314 0.249405 ATTTTGCCCACACACAAGCG 60.249 50.000 0.00 0.00 0.00 4.68
2914 3315 2.799978 GTTATTTTGCCCACACACAAGC 59.200 45.455 0.00 0.00 0.00 4.01
2915 3316 4.320608 AGTTATTTTGCCCACACACAAG 57.679 40.909 0.00 0.00 0.00 3.16
2916 3317 4.261825 GCTAGTTATTTTGCCCACACACAA 60.262 41.667 0.00 0.00 0.00 3.33
2917 3318 3.254657 GCTAGTTATTTTGCCCACACACA 59.745 43.478 0.00 0.00 0.00 3.72
2918 3319 3.669557 CGCTAGTTATTTTGCCCACACAC 60.670 47.826 0.00 0.00 0.00 3.82
2919 3320 2.486203 CGCTAGTTATTTTGCCCACACA 59.514 45.455 0.00 0.00 0.00 3.72
2920 3321 2.731027 GCGCTAGTTATTTTGCCCACAC 60.731 50.000 0.00 0.00 0.00 3.82
2921 3322 1.470890 GCGCTAGTTATTTTGCCCACA 59.529 47.619 0.00 0.00 0.00 4.17
2922 3323 1.202256 GGCGCTAGTTATTTTGCCCAC 60.202 52.381 7.64 0.00 36.51 4.61
2923 3324 1.099689 GGCGCTAGTTATTTTGCCCA 58.900 50.000 7.64 0.00 36.51 5.36
2924 3325 3.938653 GGCGCTAGTTATTTTGCCC 57.061 52.632 7.64 0.00 36.51 5.36
2925 3326 1.099689 TGGGCGCTAGTTATTTTGCC 58.900 50.000 7.64 0.00 41.72 4.52
2926 3327 1.470890 TGTGGGCGCTAGTTATTTTGC 59.529 47.619 7.64 0.00 0.00 3.68
2927 3328 2.475519 CGTGTGGGCGCTAGTTATTTTG 60.476 50.000 7.64 0.00 0.00 2.44
2928 3329 1.735571 CGTGTGGGCGCTAGTTATTTT 59.264 47.619 7.64 0.00 0.00 1.82
2929 3330 1.365699 CGTGTGGGCGCTAGTTATTT 58.634 50.000 7.64 0.00 0.00 1.40
2930 3331 3.059603 CGTGTGGGCGCTAGTTATT 57.940 52.632 7.64 0.00 0.00 1.40
2931 3332 4.827481 CGTGTGGGCGCTAGTTAT 57.173 55.556 7.64 0.00 0.00 1.89
2940 3341 1.299850 GAAAAACAGGCGTGTGGGC 60.300 57.895 13.63 0.00 36.84 5.36
2941 3342 1.362355 GGAAAAACAGGCGTGTGGG 59.638 57.895 13.63 0.00 36.84 4.61
2942 3343 1.362355 GGGAAAAACAGGCGTGTGG 59.638 57.895 13.63 0.00 36.84 4.17
2943 3344 1.106944 AGGGGAAAAACAGGCGTGTG 61.107 55.000 13.63 0.00 36.84 3.82
2944 3345 0.822121 GAGGGGAAAAACAGGCGTGT 60.822 55.000 6.15 6.15 39.19 4.49
2945 3346 1.524008 GGAGGGGAAAAACAGGCGTG 61.524 60.000 4.53 4.53 0.00 5.34
2946 3347 1.228459 GGAGGGGAAAAACAGGCGT 60.228 57.895 0.00 0.00 0.00 5.68
2947 3348 1.977009 GGGAGGGGAAAAACAGGCG 60.977 63.158 0.00 0.00 0.00 5.52
2948 3349 1.977009 CGGGAGGGGAAAAACAGGC 60.977 63.158 0.00 0.00 0.00 4.85
2949 3350 4.415783 CGGGAGGGGAAAAACAGG 57.584 61.111 0.00 0.00 0.00 4.00
2961 3362 1.664321 CGTGTAAGAGGGACCGGGAG 61.664 65.000 6.32 0.00 0.00 4.30
2962 3363 1.679977 CGTGTAAGAGGGACCGGGA 60.680 63.158 6.32 0.00 0.00 5.14
2963 3364 2.890371 CGTGTAAGAGGGACCGGG 59.110 66.667 6.32 0.00 0.00 5.73
2964 3365 2.183555 GCGTGTAAGAGGGACCGG 59.816 66.667 0.00 0.00 0.00 5.28
2965 3366 2.202570 CGCGTGTAAGAGGGACCG 60.203 66.667 0.00 0.00 0.00 4.79
2966 3367 1.445582 CACGCGTGTAAGAGGGACC 60.446 63.158 30.50 0.00 0.00 4.46
2967 3368 2.092882 GCACGCGTGTAAGAGGGAC 61.093 63.158 36.80 15.74 0.00 4.46
2968 3369 2.260434 GCACGCGTGTAAGAGGGA 59.740 61.111 36.80 0.00 0.00 4.20
2969 3370 3.179265 CGCACGCGTGTAAGAGGG 61.179 66.667 36.80 17.01 34.35 4.30
2984 3385 3.120649 CCTTTTTCTAGTAGTGCACACGC 60.121 47.826 21.04 8.40 36.20 5.34
2985 3386 3.432252 CCCTTTTTCTAGTAGTGCACACG 59.568 47.826 21.04 2.09 36.20 4.49
2986 3387 3.188667 GCCCTTTTTCTAGTAGTGCACAC 59.811 47.826 21.04 14.79 0.00 3.82
2987 3388 3.072476 AGCCCTTTTTCTAGTAGTGCACA 59.928 43.478 21.04 1.84 0.00 4.57
2988 3389 3.676093 AGCCCTTTTTCTAGTAGTGCAC 58.324 45.455 9.40 9.40 0.00 4.57
2989 3390 5.693769 ATAGCCCTTTTTCTAGTAGTGCA 57.306 39.130 0.00 0.00 0.00 4.57
2990 3391 7.052142 TCTATAGCCCTTTTTCTAGTAGTGC 57.948 40.000 0.00 0.00 0.00 4.40
2991 3392 8.091449 CCATCTATAGCCCTTTTTCTAGTAGTG 58.909 40.741 0.00 0.00 0.00 2.74
2992 3393 7.235812 CCCATCTATAGCCCTTTTTCTAGTAGT 59.764 40.741 0.00 0.00 0.00 2.73
2993 3394 7.455008 TCCCATCTATAGCCCTTTTTCTAGTAG 59.545 40.741 0.00 0.00 0.00 2.57
2994 3395 7.310634 TCCCATCTATAGCCCTTTTTCTAGTA 58.689 38.462 0.00 0.00 0.00 1.82
2995 3396 6.151049 TCCCATCTATAGCCCTTTTTCTAGT 58.849 40.000 0.00 0.00 0.00 2.57
2996 3397 6.688073 TCCCATCTATAGCCCTTTTTCTAG 57.312 41.667 0.00 0.00 0.00 2.43
2997 3398 7.294720 TCAATCCCATCTATAGCCCTTTTTCTA 59.705 37.037 0.00 0.00 0.00 2.10
2998 3399 6.103205 TCAATCCCATCTATAGCCCTTTTTCT 59.897 38.462 0.00 0.00 0.00 2.52
2999 3400 6.207614 GTCAATCCCATCTATAGCCCTTTTTC 59.792 42.308 0.00 0.00 0.00 2.29
3000 3401 6.071320 GTCAATCCCATCTATAGCCCTTTTT 58.929 40.000 0.00 0.00 0.00 1.94
3001 3402 5.134339 TGTCAATCCCATCTATAGCCCTTTT 59.866 40.000 0.00 0.00 0.00 2.27
3002 3403 4.665009 TGTCAATCCCATCTATAGCCCTTT 59.335 41.667 0.00 0.00 0.00 3.11
3003 3404 4.042187 GTGTCAATCCCATCTATAGCCCTT 59.958 45.833 0.00 0.00 0.00 3.95
3004 3405 3.584848 GTGTCAATCCCATCTATAGCCCT 59.415 47.826 0.00 0.00 0.00 5.19
3005 3406 3.584848 AGTGTCAATCCCATCTATAGCCC 59.415 47.826 0.00 0.00 0.00 5.19
3006 3407 4.899352 AGTGTCAATCCCATCTATAGCC 57.101 45.455 0.00 0.00 0.00 3.93
3007 3408 6.820656 CCATTAGTGTCAATCCCATCTATAGC 59.179 42.308 0.00 0.00 0.00 2.97
3008 3409 6.820656 GCCATTAGTGTCAATCCCATCTATAG 59.179 42.308 0.00 0.00 0.00 1.31
3009 3410 6.574269 CGCCATTAGTGTCAATCCCATCTATA 60.574 42.308 0.00 0.00 0.00 1.31
3010 3411 5.564550 GCCATTAGTGTCAATCCCATCTAT 58.435 41.667 0.00 0.00 0.00 1.98
3011 3412 4.503123 CGCCATTAGTGTCAATCCCATCTA 60.503 45.833 0.00 0.00 0.00 1.98
3012 3413 3.745480 CGCCATTAGTGTCAATCCCATCT 60.745 47.826 0.00 0.00 0.00 2.90
3013 3414 2.549754 CGCCATTAGTGTCAATCCCATC 59.450 50.000 0.00 0.00 0.00 3.51
3014 3415 2.575532 CGCCATTAGTGTCAATCCCAT 58.424 47.619 0.00 0.00 0.00 4.00
3015 3416 2.016604 GCGCCATTAGTGTCAATCCCA 61.017 52.381 0.00 0.00 0.00 4.37
3016 3417 0.663153 GCGCCATTAGTGTCAATCCC 59.337 55.000 0.00 0.00 0.00 3.85
3017 3418 1.064060 GTGCGCCATTAGTGTCAATCC 59.936 52.381 4.18 0.00 0.00 3.01
3018 3419 1.064060 GGTGCGCCATTAGTGTCAATC 59.936 52.381 12.58 0.00 34.09 2.67
3019 3420 1.094785 GGTGCGCCATTAGTGTCAAT 58.905 50.000 12.58 0.00 34.09 2.57
3020 3421 0.250510 TGGTGCGCCATTAGTGTCAA 60.251 50.000 16.89 0.00 40.46 3.18
3021 3422 0.673333 CTGGTGCGCCATTAGTGTCA 60.673 55.000 21.54 0.00 45.05 3.58
3022 3423 0.391130 TCTGGTGCGCCATTAGTGTC 60.391 55.000 21.54 0.00 45.05 3.67
3023 3424 0.673644 GTCTGGTGCGCCATTAGTGT 60.674 55.000 21.54 0.00 45.05 3.55
3024 3425 0.673333 TGTCTGGTGCGCCATTAGTG 60.673 55.000 21.54 7.89 45.05 2.74
3025 3426 0.036164 TTGTCTGGTGCGCCATTAGT 59.964 50.000 21.54 0.00 45.05 2.24
3026 3427 0.729116 CTTGTCTGGTGCGCCATTAG 59.271 55.000 21.54 8.73 45.05 1.73
3027 3428 1.305219 GCTTGTCTGGTGCGCCATTA 61.305 55.000 21.54 8.54 45.05 1.90
3028 3429 2.629656 GCTTGTCTGGTGCGCCATT 61.630 57.895 21.54 0.00 45.05 3.16
3029 3430 3.058160 GCTTGTCTGGTGCGCCAT 61.058 61.111 21.54 0.00 45.05 4.40
3042 3443 9.900090 TAGTATATACTAATGGCGCACCGCTTG 62.900 44.444 18.36 0.00 42.82 4.01
3043 3444 7.298323 AGTATATACTAATGGCGCACCGCTT 62.298 44.000 13.88 0.00 43.06 4.68
3044 3445 5.884255 AGTATATACTAATGGCGCACCGCT 61.884 45.833 13.88 0.00 43.06 5.52
3045 3446 3.675228 AGTATATACTAATGGCGCACCGC 60.675 47.826 13.88 0.24 42.89 5.68
3046 3447 4.106029 AGTATATACTAATGGCGCACCG 57.894 45.455 13.88 0.00 34.69 4.94
3057 3458 6.944290 AGGTGGTGCGTCATTAGTATATACTA 59.056 38.462 17.03 17.03 37.73 1.82
3058 3459 5.773680 AGGTGGTGCGTCATTAGTATATACT 59.226 40.000 19.07 19.07 40.24 2.12
3059 3460 6.022163 AGGTGGTGCGTCATTAGTATATAC 57.978 41.667 4.60 4.60 0.00 1.47
3060 3461 6.492429 AGAAGGTGGTGCGTCATTAGTATATA 59.508 38.462 0.00 0.00 0.00 0.86
3061 3462 5.304614 AGAAGGTGGTGCGTCATTAGTATAT 59.695 40.000 0.00 0.00 0.00 0.86
3062 3463 4.647853 AGAAGGTGGTGCGTCATTAGTATA 59.352 41.667 0.00 0.00 0.00 1.47
3063 3464 3.451178 AGAAGGTGGTGCGTCATTAGTAT 59.549 43.478 0.00 0.00 0.00 2.12
3064 3465 2.829720 AGAAGGTGGTGCGTCATTAGTA 59.170 45.455 0.00 0.00 0.00 1.82
3065 3466 1.623811 AGAAGGTGGTGCGTCATTAGT 59.376 47.619 0.00 0.00 0.00 2.24
3066 3467 2.002586 CAGAAGGTGGTGCGTCATTAG 58.997 52.381 0.00 0.00 0.00 1.73
3067 3468 1.621317 TCAGAAGGTGGTGCGTCATTA 59.379 47.619 0.00 0.00 0.00 1.90
3068 3469 0.396435 TCAGAAGGTGGTGCGTCATT 59.604 50.000 0.00 0.00 0.00 2.57
3069 3470 0.615331 ATCAGAAGGTGGTGCGTCAT 59.385 50.000 0.00 0.00 0.00 3.06
3070 3471 1.067142 GTATCAGAAGGTGGTGCGTCA 60.067 52.381 0.00 0.00 0.00 4.35
3071 3472 1.641577 GTATCAGAAGGTGGTGCGTC 58.358 55.000 0.00 0.00 0.00 5.19
3072 3473 0.108804 CGTATCAGAAGGTGGTGCGT 60.109 55.000 0.00 0.00 40.24 5.24
3073 3474 2.665777 CGTATCAGAAGGTGGTGCG 58.334 57.895 0.00 0.00 39.12 5.34
3074 3475 1.090052 GGCGTATCAGAAGGTGGTGC 61.090 60.000 0.00 0.00 0.00 5.01
3075 3476 0.249120 TGGCGTATCAGAAGGTGGTG 59.751 55.000 0.00 0.00 0.00 4.17
3076 3477 1.204146 ATGGCGTATCAGAAGGTGGT 58.796 50.000 0.00 0.00 0.00 4.16
3077 3478 2.332063 AATGGCGTATCAGAAGGTGG 57.668 50.000 0.00 0.00 0.00 4.61
3078 3479 4.202161 ACTCTAATGGCGTATCAGAAGGTG 60.202 45.833 0.00 0.00 0.00 4.00
3079 3480 3.961408 ACTCTAATGGCGTATCAGAAGGT 59.039 43.478 0.00 0.00 0.00 3.50
3080 3481 4.592485 ACTCTAATGGCGTATCAGAAGG 57.408 45.455 0.00 0.00 0.00 3.46
3081 3482 5.592054 TCAACTCTAATGGCGTATCAGAAG 58.408 41.667 0.00 0.00 0.00 2.85
3082 3483 5.592104 TCAACTCTAATGGCGTATCAGAA 57.408 39.130 0.00 0.00 0.00 3.02
3083 3484 5.592104 TTCAACTCTAATGGCGTATCAGA 57.408 39.130 0.00 0.00 0.00 3.27
3084 3485 5.812642 AGTTTCAACTCTAATGGCGTATCAG 59.187 40.000 0.00 0.00 32.86 2.90
3085 3486 5.730550 AGTTTCAACTCTAATGGCGTATCA 58.269 37.500 0.00 0.00 32.86 2.15
3086 3487 6.979238 AGTAGTTTCAACTCTAATGGCGTATC 59.021 38.462 0.00 0.00 40.37 2.24
3087 3488 6.875076 AGTAGTTTCAACTCTAATGGCGTAT 58.125 36.000 0.00 0.00 40.37 3.06
3088 3489 6.276832 AGTAGTTTCAACTCTAATGGCGTA 57.723 37.500 0.00 0.00 40.37 4.42
3089 3490 5.148651 AGTAGTTTCAACTCTAATGGCGT 57.851 39.130 0.00 0.00 40.37 5.68
3090 3491 7.621991 CATTAGTAGTTTCAACTCTAATGGCG 58.378 38.462 24.00 12.58 43.04 5.69
3093 3494 7.621991 CGCCATTAGTAGTTTCAACTCTAATG 58.378 38.462 24.33 24.33 44.21 1.90
3094 3495 6.258068 GCGCCATTAGTAGTTTCAACTCTAAT 59.742 38.462 0.00 13.27 40.37 1.73
3095 3496 5.579511 GCGCCATTAGTAGTTTCAACTCTAA 59.420 40.000 0.00 5.13 40.37 2.10
3096 3497 5.107133 GCGCCATTAGTAGTTTCAACTCTA 58.893 41.667 0.00 0.00 40.37 2.43
3097 3498 3.933332 GCGCCATTAGTAGTTTCAACTCT 59.067 43.478 0.00 0.00 40.37 3.24
3098 3499 3.682858 TGCGCCATTAGTAGTTTCAACTC 59.317 43.478 4.18 0.00 40.37 3.01
3099 3500 3.670625 TGCGCCATTAGTAGTTTCAACT 58.329 40.909 4.18 0.00 42.91 3.16
3100 3501 3.181510 CCTGCGCCATTAGTAGTTTCAAC 60.182 47.826 4.18 0.00 0.00 3.18
3101 3502 3.006940 CCTGCGCCATTAGTAGTTTCAA 58.993 45.455 4.18 0.00 0.00 2.69
3102 3503 2.627945 CCTGCGCCATTAGTAGTTTCA 58.372 47.619 4.18 0.00 0.00 2.69
3103 3504 1.940613 CCCTGCGCCATTAGTAGTTTC 59.059 52.381 4.18 0.00 0.00 2.78
3104 3505 1.280998 ACCCTGCGCCATTAGTAGTTT 59.719 47.619 4.18 0.00 0.00 2.66
3105 3506 0.909623 ACCCTGCGCCATTAGTAGTT 59.090 50.000 4.18 0.00 0.00 2.24
3106 3507 0.178068 CACCCTGCGCCATTAGTAGT 59.822 55.000 4.18 0.00 0.00 2.73
3107 3508 1.160329 GCACCCTGCGCCATTAGTAG 61.160 60.000 4.18 0.00 31.71 2.57
3108 3509 1.153249 GCACCCTGCGCCATTAGTA 60.153 57.895 4.18 0.00 31.71 1.82
3109 3510 2.438434 GCACCCTGCGCCATTAGT 60.438 61.111 4.18 0.00 31.71 2.24
3118 3519 0.535102 ATACTAATGGCGCACCCTGC 60.535 55.000 10.83 0.00 40.69 4.85
3119 3520 1.202639 TGATACTAATGGCGCACCCTG 60.203 52.381 10.83 0.00 33.59 4.45
3120 3521 1.128200 TGATACTAATGGCGCACCCT 58.872 50.000 10.83 0.00 33.59 4.34
3121 3522 1.961793 TTGATACTAATGGCGCACCC 58.038 50.000 10.83 0.00 33.59 4.61
3122 3523 4.364415 TTTTTGATACTAATGGCGCACC 57.636 40.909 10.83 0.00 0.00 5.01
3143 3544 4.082949 GGACAGGCGCACTAGTTAATTTTT 60.083 41.667 10.83 0.00 0.00 1.94
3144 3545 3.439129 GGACAGGCGCACTAGTTAATTTT 59.561 43.478 10.83 0.00 0.00 1.82
3145 3546 3.007635 GGACAGGCGCACTAGTTAATTT 58.992 45.455 10.83 0.00 0.00 1.82
3146 3547 2.027561 TGGACAGGCGCACTAGTTAATT 60.028 45.455 10.83 0.00 0.00 1.40
3147 3548 1.553248 TGGACAGGCGCACTAGTTAAT 59.447 47.619 10.83 0.00 0.00 1.40
3148 3549 0.970640 TGGACAGGCGCACTAGTTAA 59.029 50.000 10.83 0.00 0.00 2.01
3149 3550 0.970640 TTGGACAGGCGCACTAGTTA 59.029 50.000 10.83 0.00 0.00 2.24
3150 3551 0.107831 TTTGGACAGGCGCACTAGTT 59.892 50.000 10.83 0.00 0.00 2.24
3151 3552 0.602905 GTTTGGACAGGCGCACTAGT 60.603 55.000 10.83 0.47 0.00 2.57
3152 3553 0.602638 TGTTTGGACAGGCGCACTAG 60.603 55.000 10.83 0.00 0.00 2.57
3153 3554 0.036164 ATGTTTGGACAGGCGCACTA 59.964 50.000 10.83 0.00 39.58 2.74
3154 3555 0.036164 TATGTTTGGACAGGCGCACT 59.964 50.000 10.83 0.02 39.58 4.40
3155 3556 0.168128 GTATGTTTGGACAGGCGCAC 59.832 55.000 10.83 0.00 39.58 5.34
3156 3557 0.036164 AGTATGTTTGGACAGGCGCA 59.964 50.000 10.83 0.00 39.58 6.09
3157 3558 2.018542 TAGTATGTTTGGACAGGCGC 57.981 50.000 0.00 0.00 39.58 6.53
3158 3559 3.312421 CCATTAGTATGTTTGGACAGGCG 59.688 47.826 0.00 0.00 39.58 5.52
3159 3560 3.066760 GCCATTAGTATGTTTGGACAGGC 59.933 47.826 0.00 0.00 39.58 4.85
3160 3561 3.312421 CGCCATTAGTATGTTTGGACAGG 59.688 47.826 0.00 0.00 39.58 4.00
3161 3562 3.242739 GCGCCATTAGTATGTTTGGACAG 60.243 47.826 0.00 0.00 39.58 3.51
3162 3563 2.680841 GCGCCATTAGTATGTTTGGACA 59.319 45.455 0.00 0.00 40.71 4.02
3163 3564 2.680841 TGCGCCATTAGTATGTTTGGAC 59.319 45.455 4.18 0.00 0.00 4.02
3164 3565 2.992593 TGCGCCATTAGTATGTTTGGA 58.007 42.857 4.18 0.00 0.00 3.53
3165 3566 3.304659 GGATGCGCCATTAGTATGTTTGG 60.305 47.826 4.18 0.00 36.34 3.28
3166 3567 3.314913 TGGATGCGCCATTAGTATGTTTG 59.685 43.478 4.18 0.00 43.33 2.93
3167 3568 3.550820 TGGATGCGCCATTAGTATGTTT 58.449 40.909 4.18 0.00 43.33 2.83
3168 3569 3.207265 TGGATGCGCCATTAGTATGTT 57.793 42.857 4.18 0.00 43.33 2.71
3169 3570 2.928801 TGGATGCGCCATTAGTATGT 57.071 45.000 4.18 0.00 43.33 2.29
3178 3579 2.046988 CTGTGTCTGGATGCGCCA 60.047 61.111 4.18 0.00 46.96 5.69
3179 3580 2.046892 ACTGTGTCTGGATGCGCC 60.047 61.111 4.18 0.00 37.10 6.53
3180 3581 3.031964 GCACTGTGTCTGGATGCGC 62.032 63.158 9.86 0.00 0.00 6.09
3181 3582 3.171987 GCACTGTGTCTGGATGCG 58.828 61.111 9.86 0.00 0.00 4.73
3182 3583 3.031964 GCGCACTGTGTCTGGATGC 62.032 63.158 9.86 0.00 0.00 3.91
3183 3584 2.393768 GGCGCACTGTGTCTGGATG 61.394 63.158 10.83 0.00 0.00 3.51
3184 3585 2.046892 GGCGCACTGTGTCTGGAT 60.047 61.111 10.83 0.00 0.00 3.41
3185 3586 2.395988 AATGGCGCACTGTGTCTGGA 62.396 55.000 10.83 0.00 0.00 3.86
3186 3587 0.673333 TAATGGCGCACTGTGTCTGG 60.673 55.000 10.83 0.00 0.00 3.86
3187 3588 0.443869 GTAATGGCGCACTGTGTCTG 59.556 55.000 10.83 1.31 0.00 3.51
3188 3589 0.321671 AGTAATGGCGCACTGTGTCT 59.678 50.000 10.83 0.00 0.00 3.41
3189 3590 1.927174 CTAGTAATGGCGCACTGTGTC 59.073 52.381 10.83 1.86 0.00 3.67
3190 3591 1.275291 ACTAGTAATGGCGCACTGTGT 59.725 47.619 10.83 5.10 0.00 3.72
3191 3592 2.010145 ACTAGTAATGGCGCACTGTG 57.990 50.000 10.83 2.76 0.00 3.66
3192 3593 2.289444 ACAACTAGTAATGGCGCACTGT 60.289 45.455 10.83 2.52 0.00 3.55
3193 3594 2.346803 ACAACTAGTAATGGCGCACTG 58.653 47.619 10.83 1.89 0.00 3.66
3194 3595 2.762535 ACAACTAGTAATGGCGCACT 57.237 45.000 10.83 6.53 0.00 4.40
3195 3596 3.930848 AGTTACAACTAGTAATGGCGCAC 59.069 43.478 10.83 0.00 44.06 5.34
3196 3597 4.196626 AGTTACAACTAGTAATGGCGCA 57.803 40.909 10.83 0.00 44.06 6.09
3206 3607 7.657561 GGTGCGCCATTACTAGTTACAACTAG 61.658 46.154 21.97 21.97 46.85 2.57
3207 3608 5.104374 GTGCGCCATTACTAGTTACAACTA 58.896 41.667 4.18 2.07 40.37 2.24
3208 3609 3.930848 GTGCGCCATTACTAGTTACAACT 59.069 43.478 4.18 0.00 42.91 3.16
3209 3610 3.063045 GGTGCGCCATTACTAGTTACAAC 59.937 47.826 12.58 0.00 34.09 3.32
3210 3611 3.055675 AGGTGCGCCATTACTAGTTACAA 60.056 43.478 20.59 0.00 37.19 2.41
3211 3612 2.498481 AGGTGCGCCATTACTAGTTACA 59.502 45.455 20.59 0.00 37.19 2.41
3212 3613 2.864343 CAGGTGCGCCATTACTAGTTAC 59.136 50.000 20.59 0.00 37.19 2.50
3213 3614 2.159014 CCAGGTGCGCCATTACTAGTTA 60.159 50.000 20.59 0.00 37.19 2.24
3214 3615 1.406887 CCAGGTGCGCCATTACTAGTT 60.407 52.381 20.59 0.00 37.19 2.24
3215 3616 0.178068 CCAGGTGCGCCATTACTAGT 59.822 55.000 20.59 0.00 37.19 2.57
3216 3617 1.160329 GCCAGGTGCGCCATTACTAG 61.160 60.000 20.59 0.00 37.19 2.57
3217 3618 1.153249 GCCAGGTGCGCCATTACTA 60.153 57.895 20.59 0.00 37.19 1.82
3218 3619 2.438434 GCCAGGTGCGCCATTACT 60.438 61.111 20.59 0.00 37.19 2.24
3219 3620 3.518068 GGCCAGGTGCGCCATTAC 61.518 66.667 20.59 4.51 46.27 1.89
3235 3636 1.978455 TACTAATGGCGCACCCTGGG 61.978 60.000 12.28 12.28 33.59 4.45
3236 3637 0.108585 ATACTAATGGCGCACCCTGG 59.891 55.000 10.83 0.00 33.59 4.45
3237 3638 1.202639 TGATACTAATGGCGCACCCTG 60.203 52.381 10.83 0.00 33.59 4.45
3238 3639 1.128200 TGATACTAATGGCGCACCCT 58.872 50.000 10.83 0.00 33.59 4.34
3239 3640 1.961793 TTGATACTAATGGCGCACCC 58.038 50.000 10.83 0.00 33.59 4.61
3240 3641 4.364415 TTTTTGATACTAATGGCGCACC 57.636 40.909 10.83 0.00 0.00 5.01
3261 3662 5.447624 ACAGGCGCACTAGTTAAATTTTT 57.552 34.783 10.83 0.00 0.00 1.94
3262 3663 4.082949 GGACAGGCGCACTAGTTAAATTTT 60.083 41.667 10.83 0.00 0.00 1.82
3263 3664 3.439129 GGACAGGCGCACTAGTTAAATTT 59.561 43.478 10.83 0.00 0.00 1.82
3264 3665 3.007635 GGACAGGCGCACTAGTTAAATT 58.992 45.455 10.83 0.00 0.00 1.82
3265 3666 2.027561 TGGACAGGCGCACTAGTTAAAT 60.028 45.455 10.83 0.00 0.00 1.40
3266 3667 1.345089 TGGACAGGCGCACTAGTTAAA 59.655 47.619 10.83 0.00 0.00 1.52
3267 3668 0.970640 TGGACAGGCGCACTAGTTAA 59.029 50.000 10.83 0.00 0.00 2.01
3268 3669 0.970640 TTGGACAGGCGCACTAGTTA 59.029 50.000 10.83 0.00 0.00 2.24
3269 3670 0.107831 TTTGGACAGGCGCACTAGTT 59.892 50.000 10.83 0.00 0.00 2.24
3270 3671 0.602905 GTTTGGACAGGCGCACTAGT 60.603 55.000 10.83 0.47 0.00 2.57
3271 3672 0.602638 TGTTTGGACAGGCGCACTAG 60.603 55.000 10.83 0.00 0.00 2.57
3272 3673 0.036164 ATGTTTGGACAGGCGCACTA 59.964 50.000 10.83 0.00 39.58 2.74
3273 3674 0.036164 TATGTTTGGACAGGCGCACT 59.964 50.000 10.83 0.02 39.58 4.40
3274 3675 0.168128 GTATGTTTGGACAGGCGCAC 59.832 55.000 10.83 0.00 39.58 5.34
3275 3676 0.036164 AGTATGTTTGGACAGGCGCA 59.964 50.000 10.83 0.00 39.58 6.09
3276 3677 1.165270 AAGTATGTTTGGACAGGCGC 58.835 50.000 0.00 0.00 39.58 6.53
3277 3678 3.312421 CCATAAGTATGTTTGGACAGGCG 59.688 47.826 0.00 0.00 39.58 5.52
3278 3679 3.066760 GCCATAAGTATGTTTGGACAGGC 59.933 47.826 0.00 0.00 39.58 4.85
3279 3680 3.312421 CGCCATAAGTATGTTTGGACAGG 59.688 47.826 0.00 0.00 39.58 4.00
3280 3681 3.242739 GCGCCATAAGTATGTTTGGACAG 60.243 47.826 0.00 0.00 39.58 3.51
3281 3682 2.680841 GCGCCATAAGTATGTTTGGACA 59.319 45.455 0.00 0.00 40.71 4.02
3282 3683 2.680841 TGCGCCATAAGTATGTTTGGAC 59.319 45.455 4.18 0.00 31.82 4.02
3283 3684 2.992593 TGCGCCATAAGTATGTTTGGA 58.007 42.857 4.18 0.00 31.82 3.53
3284 3685 3.304659 GGATGCGCCATAAGTATGTTTGG 60.305 47.826 4.18 0.00 36.34 3.28
3285 3686 3.314913 TGGATGCGCCATAAGTATGTTTG 59.685 43.478 4.18 0.00 43.33 2.93
3286 3687 3.550820 TGGATGCGCCATAAGTATGTTT 58.449 40.909 4.18 0.00 43.33 2.83
3287 3688 3.207265 TGGATGCGCCATAAGTATGTT 57.793 42.857 4.18 0.00 43.33 2.71
3288 3689 2.928801 TGGATGCGCCATAAGTATGT 57.071 45.000 4.18 0.00 43.33 2.29
3297 3698 2.046988 CTGTGTCTGGATGCGCCA 60.047 61.111 4.18 0.00 46.96 5.69
3298 3699 2.046892 ACTGTGTCTGGATGCGCC 60.047 61.111 4.18 0.00 37.10 6.53
3299 3700 3.031964 GCACTGTGTCTGGATGCGC 62.032 63.158 9.86 0.00 0.00 6.09
3300 3701 3.171987 GCACTGTGTCTGGATGCG 58.828 61.111 9.86 0.00 0.00 4.73
3301 3702 3.031964 GCGCACTGTGTCTGGATGC 62.032 63.158 9.86 0.00 0.00 3.91
3302 3703 2.393768 GGCGCACTGTGTCTGGATG 61.394 63.158 10.83 0.00 0.00 3.51
3303 3704 2.046892 GGCGCACTGTGTCTGGAT 60.047 61.111 10.83 0.00 0.00 3.41
3304 3705 2.882677 ATGGCGCACTGTGTCTGGA 61.883 57.895 10.83 0.00 0.00 3.86
3305 3706 2.359107 ATGGCGCACTGTGTCTGG 60.359 61.111 10.83 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.