Multiple sequence alignment - TraesCS7D01G496200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G496200 chr7D 100.000 4453 0 0 1 4453 602912825 602917277 0.000000e+00 8224.0
1 TraesCS7D01G496200 chr7D 91.045 67 6 0 258 324 161430784 161430718 1.710000e-14 91.6
2 TraesCS7D01G496200 chr7D 91.045 67 6 0 258 324 183186882 183186948 1.710000e-14 91.6
3 TraesCS7D01G496200 chr7B 91.462 2811 159 32 1233 4014 683925487 683928245 0.000000e+00 3786.0
4 TraesCS7D01G496200 chr7B 85.183 1613 163 43 1675 3259 683734917 683736481 0.000000e+00 1585.0
5 TraesCS7D01G496200 chr7B 85.661 802 54 22 475 1237 683924679 683925458 0.000000e+00 787.0
6 TraesCS7D01G496200 chr7B 85.889 737 63 18 475 1176 683726686 683727416 0.000000e+00 747.0
7 TraesCS7D01G496200 chr7B 86.288 423 40 12 1233 1650 683734514 683734923 1.140000e-120 444.0
8 TraesCS7D01G496200 chr7B 85.646 418 39 9 1139 1535 88141464 88141881 1.920000e-113 420.0
9 TraesCS7D01G496200 chr7B 90.943 265 19 3 4176 4436 683928244 683928507 7.090000e-93 351.0
10 TraesCS7D01G496200 chr7B 85.401 137 17 3 351 486 199294917 199295051 6.010000e-29 139.0
11 TraesCS7D01G496200 chr7A 90.940 2351 139 35 1675 4002 694557155 694559454 0.000000e+00 3094.0
12 TraesCS7D01G496200 chr7A 84.057 1405 95 58 311 1644 694555807 694557153 0.000000e+00 1234.0
13 TraesCS7D01G496200 chr7A 91.406 128 11 0 349 476 708119079 708119206 4.580000e-40 176.0
14 TraesCS7D01G496200 chr4D 85.347 662 60 13 1045 1685 214994437 214995082 0.000000e+00 651.0
15 TraesCS7D01G496200 chr4D 93.333 210 10 4 29 238 49300854 49301059 1.560000e-79 307.0
16 TraesCS7D01G496200 chr4D 97.619 168 3 1 4012 4179 479687422 479687256 2.030000e-73 287.0
17 TraesCS7D01G496200 chr4D 93.976 166 10 0 4009 4174 334164556 334164391 7.390000e-63 252.0
18 TraesCS7D01G496200 chr4D 89.344 122 13 0 363 484 302346741 302346620 2.140000e-33 154.0
19 TraesCS7D01G496200 chr4D 89.706 68 5 2 258 324 113170497 113170431 7.940000e-13 86.1
20 TraesCS7D01G496200 chr3B 85.213 656 60 13 1051 1685 804115652 804116291 1.350000e-179 640.0
21 TraesCS7D01G496200 chr3B 88.060 134 14 2 343 476 670188335 670188204 1.660000e-34 158.0
22 TraesCS7D01G496200 chr3A 85.061 656 61 12 1051 1685 567999126 567999765 6.280000e-178 634.0
23 TraesCS7D01G496200 chr3A 91.573 178 13 2 4013 4188 238686210 238686387 1.240000e-60 244.0
24 TraesCS7D01G496200 chr3D 84.743 662 64 12 1045 1685 571453886 571454531 2.920000e-176 628.0
25 TraesCS7D01G496200 chr3D 90.987 233 14 6 12 242 330911814 330912041 1.560000e-79 307.0
26 TraesCS7D01G496200 chr3D 90.043 231 17 6 12 241 419996256 419996031 1.210000e-75 294.0
27 TraesCS7D01G496200 chr3D 91.160 181 14 2 4013 4191 187836469 187836289 1.240000e-60 244.0
28 TraesCS7D01G496200 chr3D 89.041 73 8 0 252 324 480420858 480420930 1.710000e-14 91.6
29 TraesCS7D01G496200 chr1A 84.756 656 63 13 1051 1685 409857271 409856632 1.360000e-174 623.0
30 TraesCS7D01G496200 chr1A 89.200 250 19 7 1 249 47793210 47792968 5.600000e-79 305.0
31 TraesCS7D01G496200 chr6B 84.146 656 67 14 1051 1685 130110894 130111533 6.370000e-168 601.0
32 TraesCS7D01G496200 chr6B 98.182 165 3 0 4013 4177 36133504 36133668 5.640000e-74 289.0
33 TraesCS7D01G496200 chr6B 92.941 170 12 0 4008 4177 119526975 119526806 9.560000e-62 248.0
34 TraesCS7D01G496200 chr2B 84.984 626 57 13 1051 1655 4569934 4569325 6.370000e-168 601.0
35 TraesCS7D01G496200 chr6D 93.458 214 9 5 29 242 62201250 62201458 3.340000e-81 313.0
36 TraesCS7D01G496200 chr6D 88.189 127 15 0 350 476 452741784 452741910 7.710000e-33 152.0
37 TraesCS7D01G496200 chr2D 89.958 239 22 2 1 237 486502406 486502168 1.560000e-79 307.0
38 TraesCS7D01G496200 chr2D 92.958 213 10 4 35 247 480178314 480178107 5.600000e-79 305.0
39 TraesCS7D01G496200 chr2D 94.012 167 10 0 4012 4178 87407526 87407360 2.060000e-63 254.0
40 TraesCS7D01G496200 chr2D 90.141 71 7 0 254 324 36472449 36472379 4.740000e-15 93.5
41 TraesCS7D01G496200 chr1D 93.023 215 8 6 29 242 436102977 436103185 1.560000e-79 307.0
42 TraesCS7D01G496200 chr1D 91.045 67 6 0 258 324 393035284 393035218 1.710000e-14 91.6
43 TraesCS7D01G496200 chr1D 89.552 67 7 0 258 324 188464516 188464450 7.940000e-13 86.1
44 TraesCS7D01G496200 chrUn 89.565 230 20 4 13 241 31351361 31351135 5.640000e-74 289.0
45 TraesCS7D01G496200 chrUn 93.976 166 10 0 4013 4178 141680746 141680911 7.390000e-63 252.0
46 TraesCS7D01G496200 chrUn 86.719 128 17 0 358 485 8595023 8594896 4.640000e-30 143.0
47 TraesCS7D01G496200 chr4B 97.024 168 4 1 4012 4179 606916925 606916759 9.430000e-72 281.0
48 TraesCS7D01G496200 chr5B 89.706 136 13 1 349 484 193795360 193795226 5.920000e-39 172.0
49 TraesCS7D01G496200 chr5B 89.855 69 4 3 258 324 517699893 517699826 7.940000e-13 86.1
50 TraesCS7D01G496200 chr1B 87.681 138 15 2 343 479 598421704 598421840 4.610000e-35 159.0
51 TraesCS7D01G496200 chr5D 85.401 137 19 1 350 486 435488865 435488730 1.670000e-29 141.0
52 TraesCS7D01G496200 chr5D 91.045 67 6 0 258 324 41465980 41465914 1.710000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G496200 chr7D 602912825 602917277 4452 False 8224.000000 8224 100.000000 1 4453 1 chr7D.!!$F2 4452
1 TraesCS7D01G496200 chr7B 683924679 683928507 3828 False 1641.333333 3786 89.355333 475 4436 3 chr7B.!!$F5 3961
2 TraesCS7D01G496200 chr7B 683734514 683736481 1967 False 1014.500000 1585 85.735500 1233 3259 2 chr7B.!!$F4 2026
3 TraesCS7D01G496200 chr7B 683726686 683727416 730 False 747.000000 747 85.889000 475 1176 1 chr7B.!!$F3 701
4 TraesCS7D01G496200 chr7A 694555807 694559454 3647 False 2164.000000 3094 87.498500 311 4002 2 chr7A.!!$F2 3691
5 TraesCS7D01G496200 chr4D 214994437 214995082 645 False 651.000000 651 85.347000 1045 1685 1 chr4D.!!$F2 640
6 TraesCS7D01G496200 chr3B 804115652 804116291 639 False 640.000000 640 85.213000 1051 1685 1 chr3B.!!$F1 634
7 TraesCS7D01G496200 chr3A 567999126 567999765 639 False 634.000000 634 85.061000 1051 1685 1 chr3A.!!$F2 634
8 TraesCS7D01G496200 chr3D 571453886 571454531 645 False 628.000000 628 84.743000 1045 1685 1 chr3D.!!$F3 640
9 TraesCS7D01G496200 chr1A 409856632 409857271 639 True 623.000000 623 84.756000 1051 1685 1 chr1A.!!$R2 634
10 TraesCS7D01G496200 chr6B 130110894 130111533 639 False 601.000000 601 84.146000 1051 1685 1 chr6B.!!$F2 634
11 TraesCS7D01G496200 chr2B 4569325 4569934 609 True 601.000000 601 84.984000 1051 1655 1 chr2B.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.035343 GAAAAAGCTCTACCCGGCCT 60.035 55.000 0.00 0.0 0.00 5.19 F
580 598 0.461548 CACTCCTCGGAGCAAGCATA 59.538 55.000 12.78 0.0 45.54 3.14 F
788 819 0.462759 CGGGATCAGAGTTCTTGGCC 60.463 60.000 0.00 0.0 0.00 5.36 F
808 841 1.202076 CCGGAGCTCGCTTTGATTTTC 60.202 52.381 7.83 0.0 37.59 2.29 F
1843 1972 1.278985 CACTGGTCATAGGCTTCCACA 59.721 52.381 0.00 0.0 0.00 4.17 F
1844 1973 1.556911 ACTGGTCATAGGCTTCCACAG 59.443 52.381 0.00 0.0 0.00 3.66 F
2871 3030 0.609957 CAGGAAGCATTGCCAGGTCA 60.610 55.000 4.70 0.0 36.97 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1865 1.305201 TTTTGGTTCAGACGTCAGCC 58.695 50.000 19.50 10.05 0.00 4.85 R
1846 1975 2.028876 CCAATGCAGGCAGAATGATGA 58.971 47.619 0.00 0.00 39.69 2.92 R
1847 1976 2.028876 TCCAATGCAGGCAGAATGATG 58.971 47.619 0.00 0.00 39.69 3.07 R
2045 2189 2.033407 CGCGCCATTATCTCTGTTGAAG 60.033 50.000 0.00 0.00 0.00 3.02 R
2851 3010 0.322816 GACCTGGCAATGCTTCCTGA 60.323 55.000 4.82 0.00 0.00 3.86 R
3333 3493 0.398318 GCCTCTGTCTTCACCCTGTT 59.602 55.000 0.00 0.00 0.00 3.16 R
3944 4111 0.889994 TGCATGTTCATCCTGCAACC 59.110 50.000 0.00 0.00 42.78 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.920085 AAAAGTAAACACGTTTTTCTCGC 57.080 34.783 2.37 0.00 34.23 5.03
38 39 4.603231 AAGTAAACACGTTTTTCTCGCA 57.397 36.364 2.37 0.00 34.23 5.10
39 40 4.603231 AGTAAACACGTTTTTCTCGCAA 57.397 36.364 2.37 0.00 34.23 4.85
40 41 4.972201 AGTAAACACGTTTTTCTCGCAAA 58.028 34.783 2.37 0.00 34.23 3.68
41 42 4.789629 AGTAAACACGTTTTTCTCGCAAAC 59.210 37.500 2.37 0.00 34.23 2.93
48 49 2.961522 TTTTCTCGCAAACGCTAAGG 57.038 45.000 0.00 0.00 39.84 2.69
49 50 2.157834 TTTCTCGCAAACGCTAAGGA 57.842 45.000 0.00 0.00 39.84 3.36
50 51 2.157834 TTCTCGCAAACGCTAAGGAA 57.842 45.000 0.00 0.00 39.84 3.36
51 52 1.710013 TCTCGCAAACGCTAAGGAAG 58.290 50.000 0.00 0.00 39.84 3.46
52 53 1.271379 TCTCGCAAACGCTAAGGAAGA 59.729 47.619 0.00 0.00 39.84 2.87
53 54 1.390463 CTCGCAAACGCTAAGGAAGAC 59.610 52.381 0.00 0.00 39.84 3.01
54 55 0.442699 CGCAAACGCTAAGGAAGACC 59.557 55.000 0.00 0.00 0.00 3.85
55 56 0.442699 GCAAACGCTAAGGAAGACCG 59.557 55.000 0.00 0.00 41.83 4.79
56 57 1.076332 CAAACGCTAAGGAAGACCGG 58.924 55.000 0.00 0.00 41.83 5.28
57 58 0.036671 AAACGCTAAGGAAGACCGGG 60.037 55.000 6.32 0.00 41.83 5.73
58 59 0.901580 AACGCTAAGGAAGACCGGGA 60.902 55.000 6.32 0.00 41.83 5.14
59 60 0.901580 ACGCTAAGGAAGACCGGGAA 60.902 55.000 6.32 0.00 41.83 3.97
60 61 0.248289 CGCTAAGGAAGACCGGGAAA 59.752 55.000 6.32 0.00 41.83 3.13
61 62 1.338389 CGCTAAGGAAGACCGGGAAAA 60.338 52.381 6.32 0.00 41.83 2.29
62 63 2.786777 GCTAAGGAAGACCGGGAAAAA 58.213 47.619 6.32 0.00 41.83 1.94
106 107 2.572664 AAAAAGCCGAAAACGCGTG 58.427 47.368 14.98 0.00 0.00 5.34
107 108 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
108 109 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
110 111 4.653252 GCCGAAAACGCGTGCGAA 62.653 61.111 24.61 0.00 42.83 4.70
111 112 2.052941 CCGAAAACGCGTGCGAAA 60.053 55.556 24.61 0.00 42.83 3.46
112 113 1.651730 CCGAAAACGCGTGCGAAAA 60.652 52.632 24.61 0.00 42.83 2.29
113 114 1.194896 CCGAAAACGCGTGCGAAAAA 61.195 50.000 24.61 0.00 42.83 1.94
142 143 4.879197 AAAAAGCAAAATCTGGAGGGAG 57.121 40.909 0.00 0.00 0.00 4.30
143 144 1.844687 AAGCAAAATCTGGAGGGAGC 58.155 50.000 0.00 0.00 0.00 4.70
144 145 0.393537 AGCAAAATCTGGAGGGAGCG 60.394 55.000 0.00 0.00 0.00 5.03
145 146 0.678048 GCAAAATCTGGAGGGAGCGT 60.678 55.000 0.00 0.00 0.00 5.07
146 147 1.373570 CAAAATCTGGAGGGAGCGTC 58.626 55.000 0.00 0.00 0.00 5.19
147 148 0.253327 AAAATCTGGAGGGAGCGTCC 59.747 55.000 0.00 0.00 38.71 4.79
148 149 0.909610 AAATCTGGAGGGAGCGTCCA 60.910 55.000 0.00 0.00 44.63 4.02
151 152 2.363018 TGGAGGGAGCGTCCAGAG 60.363 66.667 0.00 0.00 42.45 3.35
152 153 3.844090 GGAGGGAGCGTCCAGAGC 61.844 72.222 6.41 0.00 38.64 4.09
153 154 4.200283 GAGGGAGCGTCCAGAGCG 62.200 72.222 6.41 0.00 38.64 5.03
155 156 4.803426 GGGAGCGTCCAGAGCGTG 62.803 72.222 6.41 0.00 38.64 5.34
156 157 3.749064 GGAGCGTCCAGAGCGTGA 61.749 66.667 0.00 0.00 40.04 4.35
157 158 2.505118 GAGCGTCCAGAGCGTGAC 60.505 66.667 0.00 0.00 40.04 3.67
158 159 3.268965 GAGCGTCCAGAGCGTGACA 62.269 63.158 0.00 0.00 40.04 3.58
159 160 3.106407 GCGTCCAGAGCGTGACAC 61.106 66.667 0.00 0.00 0.00 3.67
160 161 2.801162 CGTCCAGAGCGTGACACG 60.801 66.667 23.43 23.43 45.88 4.49
161 162 2.335369 GTCCAGAGCGTGACACGT 59.665 61.111 27.32 15.14 44.73 4.49
162 163 2.016704 GTCCAGAGCGTGACACGTG 61.017 63.158 27.32 15.48 44.73 4.49
163 164 2.734723 CCAGAGCGTGACACGTGG 60.735 66.667 27.32 22.46 44.73 4.94
164 165 3.406361 CAGAGCGTGACACGTGGC 61.406 66.667 27.32 19.24 44.73 5.01
166 167 4.994201 GAGCGTGACACGTGGCGA 62.994 66.667 27.32 10.79 44.73 5.54
167 168 4.578898 AGCGTGACACGTGGCGAA 62.579 61.111 27.32 5.52 44.73 4.70
168 169 3.411351 GCGTGACACGTGGCGAAT 61.411 61.111 27.32 4.58 44.73 3.34
169 170 2.469847 CGTGACACGTGGCGAATG 59.530 61.111 21.57 3.20 36.74 2.67
170 171 2.860293 GTGACACGTGGCGAATGG 59.140 61.111 21.57 0.00 0.00 3.16
171 172 3.047280 TGACACGTGGCGAATGGC 61.047 61.111 21.57 0.00 42.51 4.40
172 173 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
173 174 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
174 175 2.741985 CACGTGGCGAATGGCTGA 60.742 61.111 7.95 0.00 42.94 4.26
175 176 2.434884 ACGTGGCGAATGGCTGAG 60.435 61.111 0.00 0.00 42.94 3.35
176 177 2.125552 CGTGGCGAATGGCTGAGA 60.126 61.111 0.00 0.00 42.94 3.27
177 178 2.169789 CGTGGCGAATGGCTGAGAG 61.170 63.158 0.00 0.00 42.94 3.20
178 179 2.124983 TGGCGAATGGCTGAGAGC 60.125 61.111 0.00 0.00 42.94 4.09
179 180 3.267860 GGCGAATGGCTGAGAGCG 61.268 66.667 0.00 0.00 43.62 5.03
180 181 3.934684 GCGAATGGCTGAGAGCGC 61.935 66.667 0.00 0.00 43.62 5.92
181 182 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
182 183 3.934684 GAATGGCTGAGAGCGCGC 61.935 66.667 26.66 26.66 43.62 6.86
188 189 3.485431 CTGAGAGCGCGCCAAGTG 61.485 66.667 30.33 12.20 0.00 3.16
199 200 2.434884 CCAAGTGGCGCTGATCGT 60.435 61.111 7.64 0.00 41.07 3.73
200 201 2.034879 CCAAGTGGCGCTGATCGTT 61.035 57.895 7.64 0.00 41.07 3.85
201 202 1.133253 CAAGTGGCGCTGATCGTTG 59.867 57.895 7.64 0.00 41.07 4.10
202 203 2.680913 AAGTGGCGCTGATCGTTGC 61.681 57.895 7.64 0.00 41.07 4.17
208 209 2.510238 GCTGATCGTTGCGAGGCT 60.510 61.111 0.00 0.00 39.91 4.58
209 210 2.520904 GCTGATCGTTGCGAGGCTC 61.521 63.158 3.87 3.87 39.91 4.70
210 211 1.880340 CTGATCGTTGCGAGGCTCC 60.880 63.158 9.32 2.37 39.91 4.70
211 212 2.586357 GATCGTTGCGAGGCTCCC 60.586 66.667 9.32 0.00 39.91 4.30
212 213 4.514577 ATCGTTGCGAGGCTCCCG 62.515 66.667 9.32 6.56 39.91 5.14
214 215 4.735132 CGTTGCGAGGCTCCCGAA 62.735 66.667 9.32 0.00 0.00 4.30
215 216 2.815647 GTTGCGAGGCTCCCGAAG 60.816 66.667 9.32 0.00 0.00 3.79
228 229 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
229 230 1.989163 CGAAGGAGCGCTCGTTAAC 59.011 57.895 36.96 26.47 37.75 2.01
230 231 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24
231 232 1.202110 CGAAGGAGCGCTCGTTAACTA 60.202 52.381 36.96 0.00 37.75 2.24
232 233 2.452105 GAAGGAGCGCTCGTTAACTAG 58.548 52.381 36.96 3.24 37.75 2.57
233 234 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
234 235 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
235 236 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
236 237 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
237 238 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
238 239 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
239 240 1.918609 CGCTCGTTAACTAGTTGCTCC 59.081 52.381 18.56 2.45 0.00 4.70
240 241 2.269172 GCTCGTTAACTAGTTGCTCCC 58.731 52.381 18.56 0.76 0.00 4.30
241 242 2.527100 CTCGTTAACTAGTTGCTCCCG 58.473 52.381 18.56 11.89 0.00 5.14
242 243 1.888512 TCGTTAACTAGTTGCTCCCGT 59.111 47.619 18.56 0.00 0.00 5.28
243 244 2.297033 TCGTTAACTAGTTGCTCCCGTT 59.703 45.455 18.56 0.00 0.00 4.44
244 245 3.062042 CGTTAACTAGTTGCTCCCGTTT 58.938 45.455 18.56 0.00 0.00 3.60
245 246 3.495753 CGTTAACTAGTTGCTCCCGTTTT 59.504 43.478 18.56 0.00 0.00 2.43
246 247 4.024641 CGTTAACTAGTTGCTCCCGTTTTT 60.025 41.667 18.56 0.00 0.00 1.94
247 248 5.177327 CGTTAACTAGTTGCTCCCGTTTTTA 59.823 40.000 18.56 0.00 0.00 1.52
248 249 6.128472 CGTTAACTAGTTGCTCCCGTTTTTAT 60.128 38.462 18.56 0.00 0.00 1.40
249 250 5.622770 AACTAGTTGCTCCCGTTTTTATG 57.377 39.130 7.48 0.00 0.00 1.90
250 251 3.439129 ACTAGTTGCTCCCGTTTTTATGC 59.561 43.478 0.00 0.00 0.00 3.14
251 252 1.544246 AGTTGCTCCCGTTTTTATGCC 59.456 47.619 0.00 0.00 0.00 4.40
252 253 1.544246 GTTGCTCCCGTTTTTATGCCT 59.456 47.619 0.00 0.00 0.00 4.75
253 254 1.459450 TGCTCCCGTTTTTATGCCTC 58.541 50.000 0.00 0.00 0.00 4.70
254 255 1.271652 TGCTCCCGTTTTTATGCCTCA 60.272 47.619 0.00 0.00 0.00 3.86
255 256 1.816224 GCTCCCGTTTTTATGCCTCAA 59.184 47.619 0.00 0.00 0.00 3.02
256 257 2.230266 GCTCCCGTTTTTATGCCTCAAA 59.770 45.455 0.00 0.00 0.00 2.69
257 258 3.119137 GCTCCCGTTTTTATGCCTCAAAT 60.119 43.478 0.00 0.00 0.00 2.32
258 259 4.097286 GCTCCCGTTTTTATGCCTCAAATA 59.903 41.667 0.00 0.00 0.00 1.40
259 260 5.733373 GCTCCCGTTTTTATGCCTCAAATAG 60.733 44.000 0.00 0.00 0.00 1.73
260 261 5.258051 TCCCGTTTTTATGCCTCAAATAGT 58.742 37.500 0.00 0.00 0.00 2.12
261 262 5.355910 TCCCGTTTTTATGCCTCAAATAGTC 59.644 40.000 0.00 0.00 0.00 2.59
262 263 5.449999 CCCGTTTTTATGCCTCAAATAGTCC 60.450 44.000 0.00 0.00 0.00 3.85
263 264 5.357032 CCGTTTTTATGCCTCAAATAGTCCT 59.643 40.000 0.00 0.00 0.00 3.85
264 265 6.258160 CGTTTTTATGCCTCAAATAGTCCTG 58.742 40.000 0.00 0.00 0.00 3.86
265 266 6.564328 GTTTTTATGCCTCAAATAGTCCTGG 58.436 40.000 0.00 0.00 0.00 4.45
266 267 2.355010 ATGCCTCAAATAGTCCTGGC 57.645 50.000 0.00 0.00 40.62 4.85
267 268 0.255890 TGCCTCAAATAGTCCTGGCC 59.744 55.000 0.00 0.00 39.60 5.36
268 269 0.255890 GCCTCAAATAGTCCTGGCCA 59.744 55.000 4.71 4.71 34.81 5.36
269 270 1.133668 GCCTCAAATAGTCCTGGCCAT 60.134 52.381 5.51 0.00 34.81 4.40
270 271 2.579873 CCTCAAATAGTCCTGGCCATG 58.420 52.381 5.51 2.84 0.00 3.66
271 272 2.579873 CTCAAATAGTCCTGGCCATGG 58.420 52.381 5.51 7.63 0.00 3.66
272 273 1.215173 TCAAATAGTCCTGGCCATGGG 59.785 52.381 15.13 4.96 0.00 4.00
294 295 4.203076 CCGGCCCGAACGACCTAG 62.203 72.222 3.71 0.00 0.00 3.02
295 296 4.867599 CGGCCCGAACGACCTAGC 62.868 72.222 0.00 0.00 0.00 3.42
296 297 4.525949 GGCCCGAACGACCTAGCC 62.526 72.222 0.00 0.00 0.00 3.93
297 298 4.525949 GCCCGAACGACCTAGCCC 62.526 72.222 0.00 0.00 0.00 5.19
298 299 4.203076 CCCGAACGACCTAGCCCG 62.203 72.222 0.00 1.24 0.00 6.13
299 300 3.136123 CCGAACGACCTAGCCCGA 61.136 66.667 8.64 0.00 0.00 5.14
300 301 2.703798 CCGAACGACCTAGCCCGAA 61.704 63.158 8.64 0.00 0.00 4.30
301 302 1.213537 CGAACGACCTAGCCCGAAA 59.786 57.895 8.64 0.00 0.00 3.46
302 303 0.388907 CGAACGACCTAGCCCGAAAA 60.389 55.000 8.64 0.00 0.00 2.29
303 304 1.799544 GAACGACCTAGCCCGAAAAA 58.200 50.000 8.64 0.00 0.00 1.94
304 305 1.730612 GAACGACCTAGCCCGAAAAAG 59.269 52.381 8.64 0.00 0.00 2.27
305 306 0.672711 ACGACCTAGCCCGAAAAAGC 60.673 55.000 8.64 0.00 0.00 3.51
306 307 0.391263 CGACCTAGCCCGAAAAAGCT 60.391 55.000 0.00 0.00 43.20 3.74
307 308 1.370609 GACCTAGCCCGAAAAAGCTC 58.629 55.000 0.00 0.00 40.56 4.09
308 309 0.984995 ACCTAGCCCGAAAAAGCTCT 59.015 50.000 0.00 0.00 40.56 4.09
309 310 2.167900 GACCTAGCCCGAAAAAGCTCTA 59.832 50.000 0.00 0.00 40.56 2.43
317 318 0.035343 GAAAAAGCTCTACCCGGCCT 60.035 55.000 0.00 0.00 0.00 5.19
354 355 4.226168 GGATAGCCAGGTATAGCCTCAAAT 59.774 45.833 0.00 0.00 46.96 2.32
361 362 4.687948 CAGGTATAGCCTCAAATGATGTCG 59.312 45.833 0.00 0.00 46.96 4.35
392 393 7.066374 GATTTAGATCGGGATTGCATAGTTC 57.934 40.000 0.00 0.00 0.00 3.01
395 396 2.620251 TCGGGATTGCATAGTTCAGG 57.380 50.000 0.00 0.00 0.00 3.86
405 406 1.942657 CATAGTTCAGGGTGCAATCGG 59.057 52.381 0.00 0.00 0.00 4.18
410 411 4.431131 AGGGTGCAATCGGCCTGG 62.431 66.667 0.00 0.00 43.89 4.45
418 419 1.597742 CAATCGGCCTGGATTTCGAT 58.402 50.000 0.00 3.44 43.06 3.59
420 421 1.884235 ATCGGCCTGGATTTCGATTC 58.116 50.000 0.00 0.00 38.96 2.52
424 425 1.221414 GCCTGGATTTCGATTCGAGG 58.779 55.000 17.43 17.43 40.82 4.63
434 435 2.536365 TCGATTCGAGGGTTCATTTCG 58.464 47.619 4.29 0.00 35.76 3.46
435 436 2.094390 TCGATTCGAGGGTTCATTTCGT 60.094 45.455 4.29 0.00 35.90 3.85
438 439 2.823924 TCGAGGGTTCATTTCGTCAA 57.176 45.000 0.00 0.00 35.90 3.18
439 440 3.114668 TCGAGGGTTCATTTCGTCAAA 57.885 42.857 0.00 0.00 35.90 2.69
440 441 3.670625 TCGAGGGTTCATTTCGTCAAAT 58.329 40.909 0.00 0.00 35.90 2.32
441 442 3.682858 TCGAGGGTTCATTTCGTCAAATC 59.317 43.478 0.00 0.00 35.90 2.17
442 443 3.684788 CGAGGGTTCATTTCGTCAAATCT 59.315 43.478 0.00 0.00 28.97 2.40
443 444 4.201724 CGAGGGTTCATTTCGTCAAATCTC 60.202 45.833 0.00 0.00 28.97 2.75
444 445 4.010349 AGGGTTCATTTCGTCAAATCTCC 58.990 43.478 0.00 0.00 28.97 3.71
445 446 3.756434 GGGTTCATTTCGTCAAATCTCCA 59.244 43.478 0.00 0.00 28.97 3.86
446 447 4.379499 GGGTTCATTTCGTCAAATCTCCAC 60.379 45.833 0.00 0.00 28.97 4.02
460 461 2.600790 TCTCCACGAGTTCAGGGTTTA 58.399 47.619 0.00 0.00 0.00 2.01
518 529 1.347907 GTCGCTCTCGTCTCGTACC 59.652 63.158 0.00 0.00 36.96 3.34
575 593 0.537188 GATTCCACTCCTCGGAGCAA 59.463 55.000 12.78 4.29 45.54 3.91
576 594 0.539051 ATTCCACTCCTCGGAGCAAG 59.461 55.000 12.78 1.93 45.54 4.01
577 595 2.125350 CCACTCCTCGGAGCAAGC 60.125 66.667 12.78 0.00 45.54 4.01
579 597 1.220206 CACTCCTCGGAGCAAGCAT 59.780 57.895 12.78 0.00 45.54 3.79
580 598 0.461548 CACTCCTCGGAGCAAGCATA 59.538 55.000 12.78 0.00 45.54 3.14
582 600 1.134670 ACTCCTCGGAGCAAGCATAAC 60.135 52.381 12.78 0.00 45.54 1.89
583 601 1.137872 CTCCTCGGAGCAAGCATAACT 59.862 52.381 0.00 0.00 35.31 2.24
788 819 0.462759 CGGGATCAGAGTTCTTGGCC 60.463 60.000 0.00 0.00 0.00 5.36
808 841 1.202076 CCGGAGCTCGCTTTGATTTTC 60.202 52.381 7.83 0.00 37.59 2.29
896 940 4.560856 GCGGAGATCGTGCTCGCT 62.561 66.667 2.69 0.00 41.72 4.93
897 941 2.103143 CGGAGATCGTGCTCGCTT 59.897 61.111 2.69 0.00 35.74 4.68
898 942 2.226896 CGGAGATCGTGCTCGCTTG 61.227 63.158 2.69 0.00 35.74 4.01
899 943 2.520904 GGAGATCGTGCTCGCTTGC 61.521 63.158 2.69 0.00 35.74 4.01
1008 1065 2.125147 CGGGCGAGAATGGCTTCA 60.125 61.111 0.00 0.00 40.84 3.02
1318 1432 4.680537 AGGCCTCCGTGGAGTCGT 62.681 66.667 14.57 0.55 40.44 4.34
1554 1668 8.867935 TGGTTTGTTTATTTGATCATTTATGCG 58.132 29.630 0.00 0.00 0.00 4.73
1598 1720 6.662414 TGTTCAGAATTGTCGGCTATAAAG 57.338 37.500 0.00 0.00 0.00 1.85
1599 1721 6.170506 TGTTCAGAATTGTCGGCTATAAAGT 58.829 36.000 0.00 0.00 0.00 2.66
1600 1722 7.324935 TGTTCAGAATTGTCGGCTATAAAGTA 58.675 34.615 0.00 0.00 0.00 2.24
1606 1728 9.826574 AGAATTGTCGGCTATAAAGTATAAACA 57.173 29.630 0.00 0.00 0.00 2.83
1607 1729 9.859692 GAATTGTCGGCTATAAAGTATAAACAC 57.140 33.333 0.00 0.00 0.00 3.32
1608 1730 9.609346 AATTGTCGGCTATAAAGTATAAACACT 57.391 29.630 0.00 0.00 0.00 3.55
1610 1732 9.740239 TTGTCGGCTATAAAGTATAAACACTAG 57.260 33.333 0.00 0.00 0.00 2.57
1611 1733 9.123902 TGTCGGCTATAAAGTATAAACACTAGA 57.876 33.333 0.00 0.00 0.00 2.43
1758 1881 1.334160 TAAGGCTGACGTCTGAACCA 58.666 50.000 24.65 5.10 0.00 3.67
1778 1901 8.040132 TGAACCAAAAAGATCACAATTTGAGTT 58.960 29.630 2.79 12.39 37.77 3.01
1793 1916 8.345565 ACAATTTGAGTTTCTAAGTTACAGCTG 58.654 33.333 13.48 13.48 0.00 4.24
1842 1971 1.279271 ACACTGGTCATAGGCTTCCAC 59.721 52.381 0.00 0.00 0.00 4.02
1843 1972 1.278985 CACTGGTCATAGGCTTCCACA 59.721 52.381 0.00 0.00 0.00 4.17
1844 1973 1.556911 ACTGGTCATAGGCTTCCACAG 59.443 52.381 0.00 0.00 0.00 3.66
1845 1974 1.556911 CTGGTCATAGGCTTCCACAGT 59.443 52.381 0.00 0.00 0.00 3.55
1846 1975 1.985159 TGGTCATAGGCTTCCACAGTT 59.015 47.619 0.00 0.00 0.00 3.16
1847 1976 2.027192 TGGTCATAGGCTTCCACAGTTC 60.027 50.000 0.00 0.00 0.00 3.01
1849 1978 3.370953 GGTCATAGGCTTCCACAGTTCAT 60.371 47.826 0.00 0.00 0.00 2.57
1850 1979 3.873952 GTCATAGGCTTCCACAGTTCATC 59.126 47.826 0.00 0.00 0.00 2.92
1851 1980 3.519107 TCATAGGCTTCCACAGTTCATCA 59.481 43.478 0.00 0.00 0.00 3.07
1852 1981 4.164796 TCATAGGCTTCCACAGTTCATCAT 59.835 41.667 0.00 0.00 0.00 2.45
1854 1983 3.350833 AGGCTTCCACAGTTCATCATTC 58.649 45.455 0.00 0.00 0.00 2.67
1855 1984 3.009916 AGGCTTCCACAGTTCATCATTCT 59.990 43.478 0.00 0.00 0.00 2.40
1856 1985 3.128242 GGCTTCCACAGTTCATCATTCTG 59.872 47.826 0.00 0.00 35.60 3.02
1857 1986 3.427233 GCTTCCACAGTTCATCATTCTGC 60.427 47.826 0.00 0.00 33.12 4.26
1858 1987 2.715046 TCCACAGTTCATCATTCTGCC 58.285 47.619 0.00 0.00 33.12 4.85
1884 2013 5.393352 GCATTGGATAAACTGAGCATGTTCA 60.393 40.000 12.02 12.02 0.00 3.18
1899 2028 3.874383 TGTTCACCTTCAGATTTCCCA 57.126 42.857 0.00 0.00 0.00 4.37
1910 2040 6.870439 CCTTCAGATTTCCCATTTTGTTCTTC 59.130 38.462 0.00 0.00 0.00 2.87
1915 2045 4.993029 TTCCCATTTTGTTCTTCGTTGT 57.007 36.364 0.00 0.00 0.00 3.32
1918 2048 6.452494 TCCCATTTTGTTCTTCGTTGTTTA 57.548 33.333 0.00 0.00 0.00 2.01
1925 2056 6.512342 TTGTTCTTCGTTGTTTAAAGGGAA 57.488 33.333 0.00 0.00 0.00 3.97
1929 2060 7.013846 TGTTCTTCGTTGTTTAAAGGGAATGAT 59.986 33.333 0.00 0.00 0.00 2.45
1980 2116 9.396022 CTACCATTATTACTTCCAGTTTCACAT 57.604 33.333 0.00 0.00 0.00 3.21
1990 2126 6.204882 ACTTCCAGTTTCACATAAAGCTGTAC 59.795 38.462 0.00 0.00 36.18 2.90
2031 2168 4.056050 ACTGTACTTTTGACTAACTGCGG 58.944 43.478 0.00 0.00 0.00 5.69
2063 2207 5.065731 CCAAGTCTTCAACAGAGATAATGGC 59.934 44.000 0.00 0.00 29.34 4.40
2065 2209 3.001736 GTCTTCAACAGAGATAATGGCGC 59.998 47.826 0.00 0.00 29.34 6.53
2072 2216 3.123804 CAGAGATAATGGCGCGTTACTT 58.876 45.455 8.43 0.00 0.00 2.24
2073 2217 4.202080 ACAGAGATAATGGCGCGTTACTTA 60.202 41.667 8.43 1.46 0.00 2.24
2075 2219 6.090783 CAGAGATAATGGCGCGTTACTTATA 58.909 40.000 8.43 0.00 0.00 0.98
2076 2220 6.251589 CAGAGATAATGGCGCGTTACTTATAG 59.748 42.308 8.43 0.00 0.00 1.31
2077 2221 6.022163 AGATAATGGCGCGTTACTTATAGT 57.978 37.500 8.43 0.00 0.00 2.12
2080 2224 8.248945 AGATAATGGCGCGTTACTTATAGTTAT 58.751 33.333 8.43 0.00 0.00 1.89
2081 2225 9.507280 GATAATGGCGCGTTACTTATAGTTATA 57.493 33.333 8.43 0.00 0.00 0.98
2082 2226 7.807687 AATGGCGCGTTACTTATAGTTATAG 57.192 36.000 8.43 0.00 0.00 1.31
2089 2240 9.823098 CGCGTTACTTATAGTTATAGACAGAAT 57.177 33.333 0.00 0.00 0.00 2.40
2140 2291 6.920758 GCACTCTGTTATAGTCATCCTTGTAG 59.079 42.308 0.00 0.00 0.00 2.74
2189 2346 2.897326 GTTGGGACTGTAAAAATGGCCT 59.103 45.455 3.32 0.00 0.00 5.19
2259 2417 7.465116 AGGGATATAAGTATGCTTTGCTTCAT 58.535 34.615 0.00 0.00 36.22 2.57
2290 2448 3.041508 AGAAAACCGTAGCTTCAGTCC 57.958 47.619 0.00 0.00 0.00 3.85
2300 2458 2.165998 AGCTTCAGTCCCAATTCTTGC 58.834 47.619 0.00 0.00 0.00 4.01
2302 2460 2.560105 GCTTCAGTCCCAATTCTTGCTT 59.440 45.455 0.00 0.00 0.00 3.91
2304 2462 4.218417 GCTTCAGTCCCAATTCTTGCTTTA 59.782 41.667 0.00 0.00 0.00 1.85
2306 2464 5.241403 TCAGTCCCAATTCTTGCTTTAGA 57.759 39.130 0.00 0.00 0.00 2.10
2307 2465 5.819991 TCAGTCCCAATTCTTGCTTTAGAT 58.180 37.500 0.00 0.00 0.00 1.98
2308 2466 5.649395 TCAGTCCCAATTCTTGCTTTAGATG 59.351 40.000 0.00 0.00 0.00 2.90
2309 2467 5.649395 CAGTCCCAATTCTTGCTTTAGATGA 59.351 40.000 0.00 0.00 0.00 2.92
2310 2468 6.320672 CAGTCCCAATTCTTGCTTTAGATGAT 59.679 38.462 0.00 0.00 0.00 2.45
2311 2469 6.320672 AGTCCCAATTCTTGCTTTAGATGATG 59.679 38.462 0.00 0.00 0.00 3.07
2312 2470 6.096001 GTCCCAATTCTTGCTTTAGATGATGT 59.904 38.462 0.00 0.00 0.00 3.06
2313 2471 6.664816 TCCCAATTCTTGCTTTAGATGATGTT 59.335 34.615 0.00 0.00 0.00 2.71
2314 2472 6.755141 CCCAATTCTTGCTTTAGATGATGTTG 59.245 38.462 0.00 0.00 0.00 3.33
2315 2473 7.318141 CCAATTCTTGCTTTAGATGATGTTGT 58.682 34.615 0.00 0.00 0.00 3.32
2316 2474 7.274904 CCAATTCTTGCTTTAGATGATGTTGTG 59.725 37.037 0.00 0.00 0.00 3.33
2317 2475 6.882610 TTCTTGCTTTAGATGATGTTGTGT 57.117 33.333 0.00 0.00 0.00 3.72
2430 2588 6.349300 AGAAAGCTGACTTGTCAAACTTCTA 58.651 36.000 14.80 0.00 35.85 2.10
2681 2840 3.065925 GCAGAACTATCATGGCCTGAAAC 59.934 47.826 3.32 0.00 37.44 2.78
2722 2881 8.934023 AATTTTCAGGTATTGGTTCTCTAACA 57.066 30.769 0.00 0.00 37.34 2.41
2809 2968 7.190920 AGAGAAATTTTCACGAACTTCGATT 57.809 32.000 17.97 3.98 43.74 3.34
2871 3030 0.609957 CAGGAAGCATTGCCAGGTCA 60.610 55.000 4.70 0.00 36.97 4.02
2905 3064 2.104572 AAAGCTGCGAGCAGTCCTCA 62.105 55.000 23.79 0.00 45.56 3.86
2969 3129 4.142609 TCACCATTAACTGATGCTCCTC 57.857 45.455 0.00 0.00 0.00 3.71
3031 3191 8.570488 CATGGCTTATTTATACTGATGCAGAAA 58.430 33.333 0.82 0.00 35.18 2.52
3152 3312 2.310538 CAATATCCAAGGCAAGTCCCC 58.689 52.381 0.00 0.00 34.51 4.81
3194 3354 3.200605 ACATGATGAGCAAGGACATGGTA 59.799 43.478 0.00 0.00 41.41 3.25
3340 3500 4.681978 GAGCGACGCCAACAGGGT 62.682 66.667 17.79 0.00 45.91 4.34
3491 3652 1.106351 TTTGTGAGCCGGCATTGTGT 61.106 50.000 31.54 6.18 0.00 3.72
3500 3661 1.399215 CCGGCATTGTGTTCGTGTTAC 60.399 52.381 0.00 0.00 0.00 2.50
3501 3662 1.529438 CGGCATTGTGTTCGTGTTACT 59.471 47.619 0.00 0.00 0.00 2.24
3502 3663 2.032377 CGGCATTGTGTTCGTGTTACTT 60.032 45.455 0.00 0.00 0.00 2.24
3503 3664 3.184783 CGGCATTGTGTTCGTGTTACTTA 59.815 43.478 0.00 0.00 0.00 2.24
3544 3705 1.970640 GGTTGCCCCTTGAAATGAGTT 59.029 47.619 0.00 0.00 0.00 3.01
3575 3736 6.908870 TGTGTATAGATCATTTGTGTCAGC 57.091 37.500 0.00 0.00 0.00 4.26
3782 3947 2.667418 CCTGTGAGGCCCAGTCAG 59.333 66.667 0.00 3.36 0.00 3.51
3911 4077 9.836076 GGACCTGTAAACTATTTTAAACATGAC 57.164 33.333 0.00 0.00 0.00 3.06
3934 4101 5.163530 ACAAACACAGAATGCATCTTCACAA 60.164 36.000 0.00 0.00 42.53 3.33
3944 4111 2.663879 GCATCTTCACAACAGAGTTGCG 60.664 50.000 9.60 0.91 0.00 4.85
3959 4126 3.667087 GCGGTTGCAGGATGAACA 58.333 55.556 0.00 0.00 39.69 3.18
3960 4127 2.183409 GCGGTTGCAGGATGAACAT 58.817 52.632 0.00 0.00 39.69 2.71
3961 4128 0.179156 GCGGTTGCAGGATGAACATG 60.179 55.000 0.00 0.00 39.69 3.21
3981 4148 6.572153 CATGCAAACATGCAAACGTATAAT 57.428 33.333 7.66 0.00 46.75 1.28
4014 4181 8.812147 TGTTATATCCAGTCGATGAATTGTAC 57.188 34.615 0.00 0.00 31.92 2.90
4015 4182 8.638873 TGTTATATCCAGTCGATGAATTGTACT 58.361 33.333 0.00 0.00 31.92 2.73
4016 4183 9.130312 GTTATATCCAGTCGATGAATTGTACTC 57.870 37.037 0.00 0.00 31.92 2.59
4017 4184 4.386867 TCCAGTCGATGAATTGTACTCC 57.613 45.455 0.00 0.00 0.00 3.85
4018 4185 3.132289 TCCAGTCGATGAATTGTACTCCC 59.868 47.826 0.00 0.00 0.00 4.30
4019 4186 3.133003 CCAGTCGATGAATTGTACTCCCT 59.867 47.826 0.00 0.00 0.00 4.20
4020 4187 4.363999 CAGTCGATGAATTGTACTCCCTC 58.636 47.826 0.00 0.00 0.00 4.30
4021 4188 3.385111 AGTCGATGAATTGTACTCCCTCC 59.615 47.826 0.00 0.00 0.00 4.30
4022 4189 2.361119 TCGATGAATTGTACTCCCTCCG 59.639 50.000 0.00 0.00 0.00 4.63
4023 4190 2.100916 CGATGAATTGTACTCCCTCCGT 59.899 50.000 0.00 0.00 0.00 4.69
4024 4191 3.430374 CGATGAATTGTACTCCCTCCGTT 60.430 47.826 0.00 0.00 0.00 4.44
4025 4192 3.604875 TGAATTGTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
4026 4193 2.235402 TGAATTGTACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
4027 4194 2.249309 ATTGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
4028 4195 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
4029 4196 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4030 4197 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4031 4198 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4032 4199 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4033 4200 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4034 4201 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
4035 4202 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
4036 4203 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4037 4204 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4038 4205 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4039 4206 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4040 4207 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4041 4208 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4042 4209 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4043 4210 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4059 4226 7.189079 AGTCTTTTTAGAGATTCCACTAGGG 57.811 40.000 0.00 0.00 34.83 3.53
4060 4227 6.157123 AGTCTTTTTAGAGATTCCACTAGGGG 59.843 42.308 3.94 3.94 37.22 4.79
4061 4228 4.772886 TTTTAGAGATTCCACTAGGGGC 57.227 45.455 5.99 0.00 37.22 5.80
4062 4229 3.708236 TTAGAGATTCCACTAGGGGCT 57.292 47.619 5.99 0.00 37.22 5.19
4063 4230 4.827036 TTAGAGATTCCACTAGGGGCTA 57.173 45.455 5.99 0.00 37.22 3.93
4064 4231 2.965562 AGAGATTCCACTAGGGGCTAC 58.034 52.381 5.99 0.00 37.22 3.58
4065 4232 2.247635 AGAGATTCCACTAGGGGCTACA 59.752 50.000 5.99 0.00 37.22 2.74
4066 4233 3.116551 AGAGATTCCACTAGGGGCTACAT 60.117 47.826 5.99 0.00 37.22 2.29
4067 4234 4.108124 AGAGATTCCACTAGGGGCTACATA 59.892 45.833 5.99 0.00 37.22 2.29
4068 4235 4.161102 AGATTCCACTAGGGGCTACATAC 58.839 47.826 5.99 0.00 37.22 2.39
4069 4236 1.991121 TCCACTAGGGGCTACATACG 58.009 55.000 5.99 0.00 37.22 3.06
4070 4237 0.966920 CCACTAGGGGCTACATACGG 59.033 60.000 0.00 0.00 0.00 4.02
4071 4238 1.479942 CCACTAGGGGCTACATACGGA 60.480 57.143 0.00 0.00 0.00 4.69
4072 4239 2.526432 CACTAGGGGCTACATACGGAT 58.474 52.381 0.00 0.00 0.00 4.18
4073 4240 2.231478 CACTAGGGGCTACATACGGATG 59.769 54.545 5.94 5.94 39.16 3.51
4075 4242 2.688902 AGGGGCTACATACGGATGTA 57.311 50.000 19.32 19.32 44.77 2.29
4076 4243 3.185880 AGGGGCTACATACGGATGTAT 57.814 47.619 20.64 2.92 45.42 2.29
4077 4244 4.326600 AGGGGCTACATACGGATGTATA 57.673 45.455 20.64 1.71 45.42 1.47
4078 4245 4.880164 AGGGGCTACATACGGATGTATAT 58.120 43.478 20.64 3.16 45.42 0.86
4079 4246 6.022107 AGGGGCTACATACGGATGTATATA 57.978 41.667 20.64 0.52 45.42 0.86
4080 4247 6.069331 AGGGGCTACATACGGATGTATATAG 58.931 44.000 20.64 12.04 45.42 1.31
4081 4248 6.066690 GGGGCTACATACGGATGTATATAGA 58.933 44.000 20.64 0.00 45.42 1.98
4082 4249 6.016443 GGGGCTACATACGGATGTATATAGAC 60.016 46.154 20.64 12.94 42.85 2.59
4083 4250 6.544931 GGGCTACATACGGATGTATATAGACA 59.455 42.308 20.64 2.07 44.57 3.41
4084 4251 7.230913 GGGCTACATACGGATGTATATAGACAT 59.769 40.741 20.64 12.70 44.57 3.06
4085 4252 9.281371 GGCTACATACGGATGTATATAGACATA 57.719 37.037 20.64 0.00 43.01 2.29
4105 4272 9.860650 AGACATATTCTAGAGTGTAGATTCACT 57.139 33.333 0.00 0.00 41.09 3.41
4115 4282 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4116 4283 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4117 4284 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4118 4285 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4119 4286 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4120 4287 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4121 4288 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4122 4289 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4123 4290 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4124 4291 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4125 4292 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4126 4293 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4127 4294 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4128 4295 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
4129 4296 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4130 4297 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
4131 4298 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
4132 4299 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
4133 4300 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
4134 4301 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
4135 4302 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
4136 4303 6.183360 TGCTCCGTATGTAGTCCATATTGAAA 60.183 38.462 0.00 0.00 38.29 2.69
4137 4304 6.874134 GCTCCGTATGTAGTCCATATTGAAAT 59.126 38.462 0.00 0.00 38.29 2.17
4138 4305 7.063544 GCTCCGTATGTAGTCCATATTGAAATC 59.936 40.741 0.00 0.00 38.29 2.17
4139 4306 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
4140 4307 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
4141 4308 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
4168 4335 8.904099 AAATGACTTATATTTAGGAACGGAGG 57.096 34.615 0.00 0.00 0.00 4.30
4169 4336 7.613551 ATGACTTATATTTAGGAACGGAGGT 57.386 36.000 0.00 0.00 0.00 3.85
4170 4337 8.716674 ATGACTTATATTTAGGAACGGAGGTA 57.283 34.615 0.00 0.00 0.00 3.08
4171 4338 8.174733 TGACTTATATTTAGGAACGGAGGTAG 57.825 38.462 0.00 0.00 0.00 3.18
4172 4339 7.781693 TGACTTATATTTAGGAACGGAGGTAGT 59.218 37.037 0.00 0.00 0.00 2.73
4173 4340 9.289782 GACTTATATTTAGGAACGGAGGTAGTA 57.710 37.037 0.00 0.00 0.00 1.82
4174 4341 9.072375 ACTTATATTTAGGAACGGAGGTAGTAC 57.928 37.037 0.00 0.00 0.00 2.73
4175 4342 9.294614 CTTATATTTAGGAACGGAGGTAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
4182 4349 6.904626 AGGAACGGAGGTAGTACTATCTAAA 58.095 40.000 15.77 0.00 0.00 1.85
4184 4351 7.284261 AGGAACGGAGGTAGTACTATCTAAAAC 59.716 40.741 15.77 3.54 0.00 2.43
4186 4353 7.944729 ACGGAGGTAGTACTATCTAAAACAA 57.055 36.000 15.77 0.00 0.00 2.83
4228 4395 8.986929 ATAAAAAGAGGATGAGAAATACTGGG 57.013 34.615 0.00 0.00 0.00 4.45
4233 4400 6.206042 AGAGGATGAGAAATACTGGGTACTT 58.794 40.000 0.00 0.00 0.00 2.24
4238 4405 4.113354 GAGAAATACTGGGTACTTGAGCG 58.887 47.826 0.00 0.00 0.00 5.03
4242 4409 1.119574 ACTGGGTACTTGAGCGGTGT 61.120 55.000 0.00 0.00 0.00 4.16
4244 4411 1.274167 CTGGGTACTTGAGCGGTGTAA 59.726 52.381 0.00 0.00 0.00 2.41
4257 4425 1.201987 CGGTGTAAATGTAGGCAACGC 60.202 52.381 0.00 0.00 46.39 4.84
4309 4480 5.473846 GGCATCTCATCATGATCAAGAACAT 59.526 40.000 17.17 3.49 0.00 2.71
4416 4587 1.098050 CTTTTCCAGGCCTGATTCGG 58.902 55.000 34.91 17.44 0.00 4.30
4436 4607 4.404715 TCGGCCTTATTTGCTCTAGTAACT 59.595 41.667 0.00 0.00 0.00 2.24
4437 4608 4.508124 CGGCCTTATTTGCTCTAGTAACTG 59.492 45.833 0.00 0.00 0.00 3.16
4438 4609 5.429130 GGCCTTATTTGCTCTAGTAACTGT 58.571 41.667 0.00 0.00 0.00 3.55
4439 4610 5.294552 GGCCTTATTTGCTCTAGTAACTGTG 59.705 44.000 0.00 0.00 0.00 3.66
4440 4611 5.294552 GCCTTATTTGCTCTAGTAACTGTGG 59.705 44.000 0.00 0.00 0.00 4.17
4441 4612 6.407202 CCTTATTTGCTCTAGTAACTGTGGT 58.593 40.000 0.00 0.00 0.00 4.16
4442 4613 6.313905 CCTTATTTGCTCTAGTAACTGTGGTG 59.686 42.308 0.00 0.00 0.00 4.17
4443 4614 4.948341 TTTGCTCTAGTAACTGTGGTGA 57.052 40.909 0.00 0.00 0.00 4.02
4444 4615 4.948341 TTGCTCTAGTAACTGTGGTGAA 57.052 40.909 0.00 0.00 0.00 3.18
4445 4616 4.948341 TGCTCTAGTAACTGTGGTGAAA 57.052 40.909 0.00 0.00 0.00 2.69
4446 4617 4.883083 TGCTCTAGTAACTGTGGTGAAAG 58.117 43.478 0.00 0.00 0.00 2.62
4447 4618 4.344102 TGCTCTAGTAACTGTGGTGAAAGT 59.656 41.667 0.00 0.00 0.00 2.66
4448 4619 5.163343 TGCTCTAGTAACTGTGGTGAAAGTT 60.163 40.000 0.00 0.00 39.82 2.66
4449 4620 5.758784 GCTCTAGTAACTGTGGTGAAAGTTT 59.241 40.000 0.00 0.00 37.74 2.66
4450 4621 6.292919 GCTCTAGTAACTGTGGTGAAAGTTTG 60.293 42.308 0.00 0.00 37.74 2.93
4451 4622 6.646267 TCTAGTAACTGTGGTGAAAGTTTGT 58.354 36.000 0.00 0.00 37.74 2.83
4452 4623 7.784037 TCTAGTAACTGTGGTGAAAGTTTGTA 58.216 34.615 0.00 0.00 37.74 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.857517 TGCGAGAAAAACGTGTTTACTTTTT 59.142 32.000 3.06 0.00 39.17 1.94
15 16 5.392286 TGCGAGAAAAACGTGTTTACTTTT 58.608 33.333 3.06 0.00 30.48 2.27
16 17 4.972201 TGCGAGAAAAACGTGTTTACTTT 58.028 34.783 3.06 0.00 31.63 2.66
17 18 4.603231 TGCGAGAAAAACGTGTTTACTT 57.397 36.364 3.06 0.00 31.63 2.24
18 19 4.603231 TTGCGAGAAAAACGTGTTTACT 57.397 36.364 3.06 3.45 31.63 2.24
19 20 5.033078 GTTTGCGAGAAAAACGTGTTTAC 57.967 39.130 3.06 1.02 31.63 2.01
36 37 0.442699 CGGTCTTCCTTAGCGTTTGC 59.557 55.000 0.00 0.00 43.24 3.68
37 38 1.076332 CCGGTCTTCCTTAGCGTTTG 58.924 55.000 0.00 0.00 36.16 2.93
38 39 0.036671 CCCGGTCTTCCTTAGCGTTT 60.037 55.000 0.00 0.00 36.16 3.60
39 40 0.901580 TCCCGGTCTTCCTTAGCGTT 60.902 55.000 0.00 0.00 36.16 4.84
40 41 0.901580 TTCCCGGTCTTCCTTAGCGT 60.902 55.000 0.00 0.00 36.16 5.07
41 42 0.248289 TTTCCCGGTCTTCCTTAGCG 59.752 55.000 0.00 0.00 37.58 4.26
42 43 2.484742 TTTTCCCGGTCTTCCTTAGC 57.515 50.000 0.00 0.00 0.00 3.09
88 89 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
89 90 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
90 91 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
91 92 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
93 94 4.653252 TTCGCACGCGTTTTCGGC 62.653 61.111 10.22 9.05 44.29 5.54
94 95 1.194896 TTTTTCGCACGCGTTTTCGG 61.195 50.000 10.22 0.00 44.29 4.30
121 122 3.007290 GCTCCCTCCAGATTTTGCTTTTT 59.993 43.478 0.00 0.00 0.00 1.94
122 123 2.564504 GCTCCCTCCAGATTTTGCTTTT 59.435 45.455 0.00 0.00 0.00 2.27
123 124 2.174360 GCTCCCTCCAGATTTTGCTTT 58.826 47.619 0.00 0.00 0.00 3.51
124 125 1.844687 GCTCCCTCCAGATTTTGCTT 58.155 50.000 0.00 0.00 0.00 3.91
125 126 0.393537 CGCTCCCTCCAGATTTTGCT 60.394 55.000 0.00 0.00 0.00 3.91
126 127 0.678048 ACGCTCCCTCCAGATTTTGC 60.678 55.000 0.00 0.00 0.00 3.68
127 128 1.373570 GACGCTCCCTCCAGATTTTG 58.626 55.000 0.00 0.00 0.00 2.44
128 129 0.253327 GGACGCTCCCTCCAGATTTT 59.747 55.000 0.00 0.00 0.00 1.82
129 130 0.909610 TGGACGCTCCCTCCAGATTT 60.910 55.000 2.23 0.00 35.03 2.17
130 131 1.306141 TGGACGCTCCCTCCAGATT 60.306 57.895 2.23 0.00 35.03 2.40
131 132 2.364560 TGGACGCTCCCTCCAGAT 59.635 61.111 2.23 0.00 35.03 2.90
134 135 2.363018 CTCTGGACGCTCCCTCCA 60.363 66.667 2.23 0.00 35.03 3.86
135 136 3.844090 GCTCTGGACGCTCCCTCC 61.844 72.222 2.23 0.00 35.03 4.30
136 137 4.200283 CGCTCTGGACGCTCCCTC 62.200 72.222 2.23 0.00 35.03 4.30
138 139 4.803426 CACGCTCTGGACGCTCCC 62.803 72.222 2.23 0.00 35.03 4.30
139 140 3.749064 TCACGCTCTGGACGCTCC 61.749 66.667 0.00 0.00 36.96 4.70
140 141 2.505118 GTCACGCTCTGGACGCTC 60.505 66.667 0.00 0.00 0.00 5.03
141 142 3.295273 TGTCACGCTCTGGACGCT 61.295 61.111 0.00 0.00 36.83 5.07
142 143 3.106407 GTGTCACGCTCTGGACGC 61.106 66.667 0.00 0.00 36.83 5.19
143 144 2.801162 CGTGTCACGCTCTGGACG 60.801 66.667 13.22 0.00 36.83 4.79
153 154 2.860293 CCATTCGCCACGTGTCAC 59.140 61.111 15.65 2.48 0.00 3.67
154 155 3.047280 GCCATTCGCCACGTGTCA 61.047 61.111 15.65 0.00 0.00 3.58
155 156 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
156 157 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
157 158 2.741985 TCAGCCATTCGCCACGTG 60.742 61.111 9.08 9.08 38.78 4.49
158 159 2.434884 CTCAGCCATTCGCCACGT 60.435 61.111 0.00 0.00 38.78 4.49
159 160 2.125552 TCTCAGCCATTCGCCACG 60.126 61.111 0.00 0.00 38.78 4.94
160 161 2.467826 GCTCTCAGCCATTCGCCAC 61.468 63.158 0.00 0.00 38.78 5.01
161 162 2.124983 GCTCTCAGCCATTCGCCA 60.125 61.111 0.00 0.00 38.78 5.69
162 163 3.267860 CGCTCTCAGCCATTCGCC 61.268 66.667 0.00 0.00 38.18 5.54
163 164 3.934684 GCGCTCTCAGCCATTCGC 61.935 66.667 0.00 0.00 38.18 4.70
164 165 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
165 166 3.934684 GCGCGCTCTCAGCCATTC 61.935 66.667 26.67 0.00 38.18 2.67
171 172 3.485431 CACTTGGCGCGCTCTCAG 61.485 66.667 32.29 21.96 0.00 3.35
182 183 2.034879 AACGATCAGCGCCACTTGG 61.035 57.895 2.29 0.00 46.04 3.61
183 184 1.133253 CAACGATCAGCGCCACTTG 59.867 57.895 2.29 0.00 46.04 3.16
184 185 2.680913 GCAACGATCAGCGCCACTT 61.681 57.895 2.29 0.00 46.04 3.16
185 186 3.121030 GCAACGATCAGCGCCACT 61.121 61.111 2.29 0.00 46.04 4.00
191 192 2.510238 AGCCTCGCAACGATCAGC 60.510 61.111 0.00 0.00 34.61 4.26
192 193 1.880340 GGAGCCTCGCAACGATCAG 60.880 63.158 0.00 0.00 34.61 2.90
193 194 2.184322 GGAGCCTCGCAACGATCA 59.816 61.111 0.00 0.00 34.61 2.92
194 195 2.586357 GGGAGCCTCGCAACGATC 60.586 66.667 3.57 0.00 34.61 3.69
195 196 4.514577 CGGGAGCCTCGCAACGAT 62.515 66.667 9.61 0.00 34.61 3.73
197 198 4.735132 TTCGGGAGCCTCGCAACG 62.735 66.667 9.61 0.36 0.00 4.10
198 199 2.815647 CTTCGGGAGCCTCGCAAC 60.816 66.667 9.61 0.00 0.00 4.17
199 200 4.082523 CCTTCGGGAGCCTCGCAA 62.083 66.667 9.61 2.18 37.25 4.85
209 210 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
210 211 1.153901 TTAACGAGCGCTCCTTCGG 60.154 57.895 30.66 18.71 0.00 4.30
211 212 0.456312 AGTTAACGAGCGCTCCTTCG 60.456 55.000 30.66 22.24 0.00 3.79
212 213 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
213 214 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
214 215 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
215 216 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
216 217 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
217 218 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
218 219 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
219 220 1.918609 GGAGCAACTAGTTAACGAGCG 59.081 52.381 14.82 8.20 0.00 5.03
220 221 2.269172 GGGAGCAACTAGTTAACGAGC 58.731 52.381 14.82 7.28 0.00 5.03
221 222 2.094854 ACGGGAGCAACTAGTTAACGAG 60.095 50.000 13.50 13.50 0.00 4.18
222 223 1.888512 ACGGGAGCAACTAGTTAACGA 59.111 47.619 8.04 0.00 0.00 3.85
223 224 2.358939 ACGGGAGCAACTAGTTAACG 57.641 50.000 8.04 10.68 0.00 3.18
224 225 5.428496 AAAAACGGGAGCAACTAGTTAAC 57.572 39.130 8.04 3.72 0.00 2.01
225 226 6.348704 GCATAAAAACGGGAGCAACTAGTTAA 60.349 38.462 8.04 0.00 0.00 2.01
226 227 5.122711 GCATAAAAACGGGAGCAACTAGTTA 59.877 40.000 8.04 0.00 0.00 2.24
227 228 4.082949 GCATAAAAACGGGAGCAACTAGTT 60.083 41.667 1.12 1.12 0.00 2.24
228 229 3.439129 GCATAAAAACGGGAGCAACTAGT 59.561 43.478 0.00 0.00 0.00 2.57
229 230 3.181500 GGCATAAAAACGGGAGCAACTAG 60.181 47.826 0.00 0.00 0.00 2.57
230 231 2.750712 GGCATAAAAACGGGAGCAACTA 59.249 45.455 0.00 0.00 0.00 2.24
231 232 1.544246 GGCATAAAAACGGGAGCAACT 59.456 47.619 0.00 0.00 0.00 3.16
232 233 1.544246 AGGCATAAAAACGGGAGCAAC 59.456 47.619 0.00 0.00 0.00 4.17
233 234 1.816224 GAGGCATAAAAACGGGAGCAA 59.184 47.619 0.00 0.00 0.00 3.91
234 235 1.271652 TGAGGCATAAAAACGGGAGCA 60.272 47.619 0.00 0.00 0.00 4.26
235 236 1.459450 TGAGGCATAAAAACGGGAGC 58.541 50.000 0.00 0.00 0.00 4.70
236 237 4.718940 ATTTGAGGCATAAAAACGGGAG 57.281 40.909 0.00 0.00 0.00 4.30
237 238 5.258051 ACTATTTGAGGCATAAAAACGGGA 58.742 37.500 0.00 0.00 0.00 5.14
238 239 5.449999 GGACTATTTGAGGCATAAAAACGGG 60.450 44.000 0.00 0.00 33.03 5.28
239 240 5.357032 AGGACTATTTGAGGCATAAAAACGG 59.643 40.000 0.00 0.00 33.03 4.44
240 241 6.258160 CAGGACTATTTGAGGCATAAAAACG 58.742 40.000 0.00 0.00 33.03 3.60
241 242 6.564328 CCAGGACTATTTGAGGCATAAAAAC 58.436 40.000 0.00 0.00 33.03 2.43
242 243 5.127031 GCCAGGACTATTTGAGGCATAAAAA 59.873 40.000 0.00 0.00 41.63 1.94
243 244 4.644685 GCCAGGACTATTTGAGGCATAAAA 59.355 41.667 0.00 0.00 41.63 1.52
244 245 4.207165 GCCAGGACTATTTGAGGCATAAA 58.793 43.478 0.00 0.00 41.63 1.40
245 246 3.435026 GGCCAGGACTATTTGAGGCATAA 60.435 47.826 0.00 0.00 43.72 1.90
246 247 2.106511 GGCCAGGACTATTTGAGGCATA 59.893 50.000 0.00 0.00 43.72 3.14
247 248 1.133668 GGCCAGGACTATTTGAGGCAT 60.134 52.381 0.00 0.00 43.72 4.40
248 249 0.255890 GGCCAGGACTATTTGAGGCA 59.744 55.000 0.00 0.00 43.72 4.75
249 250 0.255890 TGGCCAGGACTATTTGAGGC 59.744 55.000 0.00 0.00 41.29 4.70
250 251 2.579873 CATGGCCAGGACTATTTGAGG 58.420 52.381 13.35 0.00 0.00 3.86
251 252 2.579873 CCATGGCCAGGACTATTTGAG 58.420 52.381 21.32 0.00 0.00 3.02
252 253 1.215173 CCCATGGCCAGGACTATTTGA 59.785 52.381 21.32 0.00 0.00 2.69
253 254 1.696063 CCCATGGCCAGGACTATTTG 58.304 55.000 21.32 5.21 0.00 2.32
254 255 0.106015 GCCCATGGCCAGGACTATTT 60.106 55.000 21.32 0.00 44.06 1.40
255 256 1.538666 GCCCATGGCCAGGACTATT 59.461 57.895 21.32 0.00 44.06 1.73
256 257 3.255032 GCCCATGGCCAGGACTAT 58.745 61.111 21.32 0.00 44.06 2.12
277 278 4.203076 CTAGGTCGTTCGGGCCGG 62.203 72.222 27.98 10.57 0.00 6.13
278 279 4.867599 GCTAGGTCGTTCGGGCCG 62.868 72.222 22.51 22.51 0.00 6.13
279 280 4.525949 GGCTAGGTCGTTCGGGCC 62.526 72.222 0.00 0.00 0.00 5.80
280 281 4.525949 GGGCTAGGTCGTTCGGGC 62.526 72.222 0.00 0.00 0.00 6.13
281 282 4.203076 CGGGCTAGGTCGTTCGGG 62.203 72.222 0.00 0.00 0.00 5.14
282 283 2.216750 TTTCGGGCTAGGTCGTTCGG 62.217 60.000 0.00 0.00 0.00 4.30
283 284 0.388907 TTTTCGGGCTAGGTCGTTCG 60.389 55.000 0.00 0.00 0.00 3.95
284 285 1.730612 CTTTTTCGGGCTAGGTCGTTC 59.269 52.381 0.00 0.00 0.00 3.95
285 286 1.804601 CTTTTTCGGGCTAGGTCGTT 58.195 50.000 0.00 0.00 0.00 3.85
286 287 0.672711 GCTTTTTCGGGCTAGGTCGT 60.673 55.000 0.00 0.00 0.00 4.34
287 288 0.391263 AGCTTTTTCGGGCTAGGTCG 60.391 55.000 0.00 0.00 37.00 4.79
288 289 1.066071 AGAGCTTTTTCGGGCTAGGTC 60.066 52.381 0.00 0.00 39.05 3.85
289 290 0.984995 AGAGCTTTTTCGGGCTAGGT 59.015 50.000 0.00 0.00 39.05 3.08
290 291 2.552031 GTAGAGCTTTTTCGGGCTAGG 58.448 52.381 0.00 0.00 39.05 3.02
291 292 2.552031 GGTAGAGCTTTTTCGGGCTAG 58.448 52.381 0.00 0.00 39.05 3.42
292 293 1.208776 GGGTAGAGCTTTTTCGGGCTA 59.791 52.381 0.00 0.00 39.05 3.93
293 294 0.035343 GGGTAGAGCTTTTTCGGGCT 60.035 55.000 0.00 0.00 41.88 5.19
294 295 1.366854 CGGGTAGAGCTTTTTCGGGC 61.367 60.000 0.00 0.00 0.00 6.13
295 296 0.743345 CCGGGTAGAGCTTTTTCGGG 60.743 60.000 0.00 0.49 33.27 5.14
296 297 1.366854 GCCGGGTAGAGCTTTTTCGG 61.367 60.000 2.18 10.64 39.07 4.30
297 298 1.366854 GGCCGGGTAGAGCTTTTTCG 61.367 60.000 2.18 0.00 0.00 3.46
298 299 0.035343 AGGCCGGGTAGAGCTTTTTC 60.035 55.000 2.18 0.00 0.00 2.29
299 300 0.322546 CAGGCCGGGTAGAGCTTTTT 60.323 55.000 2.18 0.00 0.00 1.94
300 301 1.299976 CAGGCCGGGTAGAGCTTTT 59.700 57.895 2.18 0.00 0.00 2.27
301 302 2.670148 CCAGGCCGGGTAGAGCTTT 61.670 63.158 14.74 0.00 0.00 3.51
302 303 3.083997 CCAGGCCGGGTAGAGCTT 61.084 66.667 14.74 0.00 0.00 3.74
317 318 3.682644 TATCCTTCGGTCCGGGCCA 62.683 63.158 27.89 9.80 0.00 5.36
325 326 2.400467 ATACCTGGCTATCCTTCGGT 57.600 50.000 0.00 0.00 34.30 4.69
327 328 2.166664 GGCTATACCTGGCTATCCTTCG 59.833 54.545 0.00 0.00 34.51 3.79
373 374 3.244353 CCTGAACTATGCAATCCCGATCT 60.244 47.826 0.00 0.00 0.00 2.75
376 377 1.140852 CCCTGAACTATGCAATCCCGA 59.859 52.381 0.00 0.00 0.00 5.14
380 381 2.368439 TGCACCCTGAACTATGCAATC 58.632 47.619 0.00 0.00 44.72 2.67
392 393 3.136123 CAGGCCGATTGCACCCTG 61.136 66.667 0.00 0.00 43.89 4.45
395 396 1.322538 AAATCCAGGCCGATTGCACC 61.323 55.000 6.64 0.00 43.89 5.01
405 406 1.221414 CCTCGAATCGAAATCCAGGC 58.779 55.000 6.84 0.00 34.74 4.85
410 411 5.485662 AAATGAACCCTCGAATCGAAATC 57.514 39.130 6.84 3.55 34.74 2.17
418 419 2.823924 TGACGAAATGAACCCTCGAA 57.176 45.000 0.00 0.00 36.45 3.71
420 421 3.684788 AGATTTGACGAAATGAACCCTCG 59.315 43.478 0.00 0.00 38.53 4.63
424 425 4.669197 CGTGGAGATTTGACGAAATGAACC 60.669 45.833 0.00 0.00 35.05 3.62
434 435 2.996621 CCTGAACTCGTGGAGATTTGAC 59.003 50.000 0.00 0.00 33.32 3.18
435 436 2.028112 CCCTGAACTCGTGGAGATTTGA 60.028 50.000 0.00 0.00 33.32 2.69
438 439 1.645710 ACCCTGAACTCGTGGAGATT 58.354 50.000 0.00 0.00 33.32 2.40
439 440 1.645710 AACCCTGAACTCGTGGAGAT 58.354 50.000 0.00 0.00 33.32 2.75
440 441 1.420430 AAACCCTGAACTCGTGGAGA 58.580 50.000 0.00 0.00 33.32 3.71
441 442 3.396260 TTAAACCCTGAACTCGTGGAG 57.604 47.619 0.00 0.00 35.52 3.86
442 443 3.842007 TTTAAACCCTGAACTCGTGGA 57.158 42.857 0.00 0.00 0.00 4.02
443 444 4.517453 TCATTTTAAACCCTGAACTCGTGG 59.483 41.667 0.00 0.00 0.00 4.94
444 445 5.682943 TCATTTTAAACCCTGAACTCGTG 57.317 39.130 0.00 0.00 0.00 4.35
445 446 5.009310 GGTTCATTTTAAACCCTGAACTCGT 59.991 40.000 23.31 0.00 44.29 4.18
446 447 5.240844 AGGTTCATTTTAAACCCTGAACTCG 59.759 40.000 23.31 0.00 46.08 4.18
496 501 1.229315 ACGAGACGAGAGCGACACTT 61.229 55.000 0.00 0.00 41.64 3.16
505 510 2.118313 TGGAATGGTACGAGACGAGA 57.882 50.000 0.00 0.00 0.00 4.04
506 511 2.527100 GTTGGAATGGTACGAGACGAG 58.473 52.381 0.00 0.00 0.00 4.18
507 512 1.203052 GGTTGGAATGGTACGAGACGA 59.797 52.381 0.00 0.00 0.00 4.20
508 513 1.636988 GGTTGGAATGGTACGAGACG 58.363 55.000 0.00 0.00 0.00 4.18
509 514 1.406477 GGGGTTGGAATGGTACGAGAC 60.406 57.143 0.00 0.00 0.00 3.36
575 593 1.065126 GGCTCCTGGTTCAGTTATGCT 60.065 52.381 0.00 0.00 0.00 3.79
576 594 1.065126 AGGCTCCTGGTTCAGTTATGC 60.065 52.381 0.00 0.00 0.00 3.14
577 595 2.636830 CAGGCTCCTGGTTCAGTTATG 58.363 52.381 8.03 0.00 40.17 1.90
579 597 0.324943 GCAGGCTCCTGGTTCAGTTA 59.675 55.000 16.89 0.00 43.77 2.24
580 598 1.073897 GCAGGCTCCTGGTTCAGTT 59.926 57.895 16.89 0.00 43.77 3.16
582 600 2.435586 CGCAGGCTCCTGGTTCAG 60.436 66.667 16.89 0.00 43.77 3.02
583 601 4.704833 GCGCAGGCTCCTGGTTCA 62.705 66.667 16.89 0.00 43.77 3.18
651 680 3.827898 GAGGGTGGCGACGAGGAG 61.828 72.222 0.00 0.00 0.00 3.69
760 791 2.203252 CTGATCCCGGGCATGGTG 60.203 66.667 18.49 0.00 0.00 4.17
788 819 0.804989 AAAATCAAAGCGAGCTCCGG 59.195 50.000 8.47 0.00 39.04 5.14
881 925 2.520904 GCAAGCGAGCACGATCTCC 61.521 63.158 8.01 0.00 42.66 3.71
1380 1494 1.476845 TACAAGCAGCCTTCCCACGA 61.477 55.000 0.00 0.00 0.00 4.35
1613 1735 5.850557 ACACATGATTGGACACTGAAAAA 57.149 34.783 0.00 0.00 0.00 1.94
1742 1865 1.305201 TTTTGGTTCAGACGTCAGCC 58.695 50.000 19.50 10.05 0.00 4.85
1778 1901 9.471702 ACTAGTATAACCAGCTGTAACTTAGAA 57.528 33.333 13.81 0.00 0.00 2.10
1793 1916 8.494016 AAGCAATCAACAAGACTAGTATAACC 57.506 34.615 0.00 0.00 0.00 2.85
1836 1965 3.128242 GGCAGAATGATGAACTGTGGAAG 59.872 47.826 0.00 0.00 39.69 3.46
1837 1966 3.084039 GGCAGAATGATGAACTGTGGAA 58.916 45.455 0.00 0.00 39.69 3.53
1838 1967 2.306805 AGGCAGAATGATGAACTGTGGA 59.693 45.455 0.00 0.00 39.69 4.02
1839 1968 2.422479 CAGGCAGAATGATGAACTGTGG 59.578 50.000 0.00 0.00 39.69 4.17
1842 1971 2.089201 TGCAGGCAGAATGATGAACTG 58.911 47.619 0.00 0.00 39.69 3.16
1843 1972 2.502142 TGCAGGCAGAATGATGAACT 57.498 45.000 0.00 0.00 39.69 3.01
1844 1973 3.444916 CAATGCAGGCAGAATGATGAAC 58.555 45.455 0.00 0.00 39.69 3.18
1845 1974 2.429250 CCAATGCAGGCAGAATGATGAA 59.571 45.455 0.00 0.00 39.69 2.57
1846 1975 2.028876 CCAATGCAGGCAGAATGATGA 58.971 47.619 0.00 0.00 39.69 2.92
1847 1976 2.028876 TCCAATGCAGGCAGAATGATG 58.971 47.619 0.00 0.00 39.69 3.07
1849 1978 2.447408 ATCCAATGCAGGCAGAATGA 57.553 45.000 0.00 0.00 39.69 2.57
1850 1979 4.098960 AGTTTATCCAATGCAGGCAGAATG 59.901 41.667 0.00 0.00 40.87 2.67
1851 1980 4.098960 CAGTTTATCCAATGCAGGCAGAAT 59.901 41.667 0.00 0.00 0.00 2.40
1852 1981 3.444742 CAGTTTATCCAATGCAGGCAGAA 59.555 43.478 0.00 0.00 0.00 3.02
1854 1983 3.018856 TCAGTTTATCCAATGCAGGCAG 58.981 45.455 0.00 0.00 0.00 4.85
1855 1984 3.018856 CTCAGTTTATCCAATGCAGGCA 58.981 45.455 0.00 0.00 0.00 4.75
1856 1985 2.223665 GCTCAGTTTATCCAATGCAGGC 60.224 50.000 0.00 0.00 0.00 4.85
1857 1986 3.018856 TGCTCAGTTTATCCAATGCAGG 58.981 45.455 0.00 0.00 0.00 4.85
1858 1987 4.097437 ACATGCTCAGTTTATCCAATGCAG 59.903 41.667 0.00 0.00 32.65 4.41
1884 2013 5.840693 AGAACAAAATGGGAAATCTGAAGGT 59.159 36.000 0.00 0.00 0.00 3.50
1899 2028 7.548967 TCCCTTTAAACAACGAAGAACAAAAT 58.451 30.769 0.00 0.00 0.00 1.82
1910 2040 6.751888 GGATCAATCATTCCCTTTAAACAACG 59.248 38.462 0.00 0.00 0.00 4.10
1915 2045 7.838696 TGCTAAGGATCAATCATTCCCTTTAAA 59.161 33.333 0.00 0.00 38.16 1.52
1918 2048 5.769835 TGCTAAGGATCAATCATTCCCTTT 58.230 37.500 0.00 0.00 38.16 3.11
1925 2056 4.476297 TGCCAATGCTAAGGATCAATCAT 58.524 39.130 0.00 0.00 38.71 2.45
1929 2060 3.887110 CAGATGCCAATGCTAAGGATCAA 59.113 43.478 0.00 0.00 38.71 2.57
2045 2189 2.033407 CGCGCCATTATCTCTGTTGAAG 60.033 50.000 0.00 0.00 0.00 3.02
2063 2207 9.823098 ATTCTGTCTATAACTATAAGTAACGCG 57.177 33.333 3.53 3.53 0.00 6.01
2089 2240 7.924947 CACATTCTGCAGATCAGTAGAAATAGA 59.075 37.037 19.04 0.00 42.19 1.98
2126 2277 6.183360 GGCAGATTTCTCTACAAGGATGACTA 60.183 42.308 0.00 0.00 0.00 2.59
2127 2278 5.396213 GGCAGATTTCTCTACAAGGATGACT 60.396 44.000 0.00 0.00 0.00 3.41
2140 2291 3.812053 AGCACGATTATGGCAGATTTCTC 59.188 43.478 0.00 0.00 0.00 2.87
2259 2417 4.141869 GCTACGGTTTTCTTGGGGTATAGA 60.142 45.833 0.00 0.00 0.00 1.98
2314 2472 7.171508 CCATACTACCATATCATGTGACAACAC 59.828 40.741 0.00 0.00 46.09 3.32
2315 2473 7.147567 ACCATACTACCATATCATGTGACAACA 60.148 37.037 0.00 0.00 41.58 3.33
2316 2474 7.217200 ACCATACTACCATATCATGTGACAAC 58.783 38.462 0.00 0.00 0.00 3.32
2317 2475 7.373617 ACCATACTACCATATCATGTGACAA 57.626 36.000 0.00 0.00 0.00 3.18
2430 2588 5.072736 TCTGATCAGATAATGAATGGGCAGT 59.927 40.000 21.67 0.00 42.53 4.40
2753 2912 4.141756 TGGCACAAACATCAGGAAACAAAT 60.142 37.500 0.00 0.00 31.92 2.32
2809 2968 8.750515 TCATTTATATTGGAGACAGCAATCAA 57.249 30.769 0.00 0.00 44.54 2.57
2851 3010 0.322816 GACCTGGCAATGCTTCCTGA 60.323 55.000 4.82 0.00 0.00 3.86
2905 3064 5.066505 CCTTAACTATCTGGCGAGCATTTTT 59.933 40.000 0.00 0.00 0.00 1.94
2969 3129 5.982356 TCCCAGACAAAAGACATAGATCAG 58.018 41.667 0.00 0.00 0.00 2.90
3031 3191 5.530712 GCATGGGCATTTTGTTTGAAAAAT 58.469 33.333 0.00 0.00 39.71 1.82
3194 3354 2.362632 CCTCGGAGTCCCCTTCGT 60.363 66.667 2.80 0.00 40.75 3.85
3333 3493 0.398318 GCCTCTGTCTTCACCCTGTT 59.602 55.000 0.00 0.00 0.00 3.16
3340 3500 1.328279 TCGTTCTGCCTCTGTCTTCA 58.672 50.000 0.00 0.00 0.00 3.02
3472 3632 1.106351 ACACAATGCCGGCTCACAAA 61.106 50.000 29.70 6.08 0.00 2.83
3491 3652 7.458409 AATCTACAGAGGTAAGTAACACGAA 57.542 36.000 0.00 0.00 0.00 3.85
3500 3661 6.758886 CCTAGCACAAAATCTACAGAGGTAAG 59.241 42.308 0.00 0.00 0.00 2.34
3501 3662 6.212791 ACCTAGCACAAAATCTACAGAGGTAA 59.787 38.462 0.00 0.00 0.00 2.85
3502 3663 5.720041 ACCTAGCACAAAATCTACAGAGGTA 59.280 40.000 0.00 0.00 0.00 3.08
3503 3664 4.532521 ACCTAGCACAAAATCTACAGAGGT 59.467 41.667 0.00 0.00 0.00 3.85
3544 3705 9.559732 CACAAATGATCTATACACAATCCCTAA 57.440 33.333 0.00 0.00 0.00 2.69
3575 3736 1.920574 CTTACAGACCGAGTCGCATTG 59.079 52.381 7.12 6.91 37.67 2.82
3911 4077 4.862350 TGTGAAGATGCATTCTGTGTTTG 58.138 39.130 0.00 0.00 33.93 2.93
3920 4087 4.558095 GCAACTCTGTTGTGAAGATGCATT 60.558 41.667 0.00 0.00 0.00 3.56
3944 4111 0.889994 TGCATGTTCATCCTGCAACC 59.110 50.000 0.00 0.00 42.78 3.77
4005 4172 2.235402 GGAACGGAGGGAGTACAATTCA 59.765 50.000 0.00 0.00 0.00 2.57
4014 4181 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4015 4182 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4016 4183 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4017 4184 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4033 4200 8.759782 CCCTAGTGGAATCTCTAAAAAGACTTA 58.240 37.037 0.00 0.00 35.39 2.24
4034 4201 7.311360 CCCCTAGTGGAATCTCTAAAAAGACTT 60.311 40.741 0.00 0.00 35.39 3.01
4035 4202 6.157123 CCCCTAGTGGAATCTCTAAAAAGACT 59.843 42.308 0.00 0.00 35.39 3.24
4036 4203 6.350103 CCCCTAGTGGAATCTCTAAAAAGAC 58.650 44.000 0.00 0.00 35.39 3.01
4037 4204 5.104485 GCCCCTAGTGGAATCTCTAAAAAGA 60.104 44.000 0.00 0.00 35.39 2.52
4038 4205 5.104318 AGCCCCTAGTGGAATCTCTAAAAAG 60.104 44.000 0.00 0.00 35.39 2.27
4039 4206 4.788617 AGCCCCTAGTGGAATCTCTAAAAA 59.211 41.667 0.00 0.00 35.39 1.94
4040 4207 4.371681 AGCCCCTAGTGGAATCTCTAAAA 58.628 43.478 0.00 0.00 35.39 1.52
4041 4208 4.008916 AGCCCCTAGTGGAATCTCTAAA 57.991 45.455 0.00 0.00 35.39 1.85
4042 4209 3.708236 AGCCCCTAGTGGAATCTCTAA 57.292 47.619 0.00 0.00 35.39 2.10
4043 4210 3.465966 TGTAGCCCCTAGTGGAATCTCTA 59.534 47.826 0.00 0.00 35.39 2.43
4044 4211 2.247635 TGTAGCCCCTAGTGGAATCTCT 59.752 50.000 0.00 0.00 35.39 3.10
4045 4212 2.679082 TGTAGCCCCTAGTGGAATCTC 58.321 52.381 0.00 0.00 35.39 2.75
4046 4213 2.868964 TGTAGCCCCTAGTGGAATCT 57.131 50.000 0.00 0.00 35.39 2.40
4047 4214 3.056749 CGTATGTAGCCCCTAGTGGAATC 60.057 52.174 0.00 0.00 35.39 2.52
4048 4215 2.897969 CGTATGTAGCCCCTAGTGGAAT 59.102 50.000 0.00 0.00 35.39 3.01
4049 4216 2.313317 CGTATGTAGCCCCTAGTGGAA 58.687 52.381 0.00 0.00 35.39 3.53
4050 4217 1.479942 CCGTATGTAGCCCCTAGTGGA 60.480 57.143 0.00 0.00 35.39 4.02
4051 4218 0.966920 CCGTATGTAGCCCCTAGTGG 59.033 60.000 0.00 0.00 0.00 4.00
4052 4219 1.991121 TCCGTATGTAGCCCCTAGTG 58.009 55.000 0.00 0.00 0.00 2.74
4053 4220 2.158355 ACATCCGTATGTAGCCCCTAGT 60.158 50.000 0.00 0.00 44.66 2.57
4054 4221 2.526432 ACATCCGTATGTAGCCCCTAG 58.474 52.381 0.00 0.00 44.66 3.02
4055 4222 2.688902 ACATCCGTATGTAGCCCCTA 57.311 50.000 0.00 0.00 44.66 3.53
4056 4223 2.688902 TACATCCGTATGTAGCCCCT 57.311 50.000 0.00 0.00 44.66 4.79
4079 4246 9.860650 AGTGAATCTACACTCTAGAATATGTCT 57.139 33.333 7.12 0.00 46.36 3.41
4093 4260 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4094 4261 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4095 4262 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4096 4263 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4097 4264 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4098 4265 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4099 4266 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4100 4267 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4101 4268 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4102 4269 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4103 4270 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4104 4271 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
4105 4272 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
4106 4273 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
4107 4274 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4108 4275 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4109 4276 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
4110 4277 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
4111 4278 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
4112 4279 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
4113 4280 8.307483 AGATTTCAATATGGACTACATACGGAG 58.693 37.037 0.00 0.00 44.41 4.63
4114 4281 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
4115 4282 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
4142 4309 9.338622 CCTCCGTTCCTAAATATAAGTCATTTT 57.661 33.333 0.00 0.00 0.00 1.82
4143 4310 8.491958 ACCTCCGTTCCTAAATATAAGTCATTT 58.508 33.333 0.00 0.00 0.00 2.32
4144 4311 8.030913 ACCTCCGTTCCTAAATATAAGTCATT 57.969 34.615 0.00 0.00 0.00 2.57
4145 4312 7.613551 ACCTCCGTTCCTAAATATAAGTCAT 57.386 36.000 0.00 0.00 0.00 3.06
4146 4313 7.781693 ACTACCTCCGTTCCTAAATATAAGTCA 59.218 37.037 0.00 0.00 0.00 3.41
4147 4314 8.175925 ACTACCTCCGTTCCTAAATATAAGTC 57.824 38.462 0.00 0.00 0.00 3.01
4148 4315 9.072375 GTACTACCTCCGTTCCTAAATATAAGT 57.928 37.037 0.00 0.00 0.00 2.24
4149 4316 9.294614 AGTACTACCTCCGTTCCTAAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
4152 4319 9.460019 GATAGTACTACCTCCGTTCCTAAATAT 57.540 37.037 4.31 0.00 0.00 1.28
4153 4320 8.664079 AGATAGTACTACCTCCGTTCCTAAATA 58.336 37.037 4.31 0.00 0.00 1.40
4154 4321 7.525165 AGATAGTACTACCTCCGTTCCTAAAT 58.475 38.462 4.31 0.00 0.00 1.40
4155 4322 6.904626 AGATAGTACTACCTCCGTTCCTAAA 58.095 40.000 4.31 0.00 0.00 1.85
4156 4323 6.506538 AGATAGTACTACCTCCGTTCCTAA 57.493 41.667 4.31 0.00 0.00 2.69
4157 4324 7.618019 TTAGATAGTACTACCTCCGTTCCTA 57.382 40.000 1.26 0.00 0.00 2.94
4158 4325 6.506538 TTAGATAGTACTACCTCCGTTCCT 57.493 41.667 1.26 0.00 0.00 3.36
4159 4326 7.067494 TGTTTTAGATAGTACTACCTCCGTTCC 59.933 40.741 1.26 0.00 0.00 3.62
4160 4327 7.989826 TGTTTTAGATAGTACTACCTCCGTTC 58.010 38.462 1.26 0.00 0.00 3.95
4161 4328 7.944729 TGTTTTAGATAGTACTACCTCCGTT 57.055 36.000 1.26 0.00 0.00 4.44
4162 4329 7.944729 TTGTTTTAGATAGTACTACCTCCGT 57.055 36.000 1.26 0.00 0.00 4.69
4163 4330 9.643693 TTTTTGTTTTAGATAGTACTACCTCCG 57.356 33.333 1.26 0.00 0.00 4.63
4211 4378 5.964477 TCAAGTACCCAGTATTTCTCATCCT 59.036 40.000 0.00 0.00 0.00 3.24
4216 4383 4.113354 CGCTCAAGTACCCAGTATTTCTC 58.887 47.826 0.00 0.00 0.00 2.87
4224 4391 0.892755 TACACCGCTCAAGTACCCAG 59.107 55.000 0.00 0.00 0.00 4.45
4228 4395 4.565564 CCTACATTTACACCGCTCAAGTAC 59.434 45.833 0.00 0.00 0.00 2.73
4233 4400 1.276705 TGCCTACATTTACACCGCTCA 59.723 47.619 0.00 0.00 0.00 4.26
4238 4405 1.201987 CGCGTTGCCTACATTTACACC 60.202 52.381 0.00 0.00 0.00 4.16
4242 4409 1.080298 CCACGCGTTGCCTACATTTA 58.920 50.000 10.22 0.00 0.00 1.40
4244 4411 2.686816 GCCACGCGTTGCCTACATT 61.687 57.895 23.57 0.00 0.00 2.71
4257 4425 1.524621 GGAGATGGTCCATGCCACG 60.525 63.158 9.76 0.00 46.10 4.94
4309 4480 1.879380 CCTGCATTTCCGTTTGTCTGA 59.121 47.619 0.00 0.00 0.00 3.27
4333 4504 1.668751 TCTGGTTGTTGCTGACGAAAC 59.331 47.619 0.00 0.00 0.00 2.78
4407 4578 2.291741 GAGCAAATAAGGCCGAATCAGG 59.708 50.000 0.00 0.00 0.00 3.86
4416 4587 5.294552 CCACAGTTACTAGAGCAAATAAGGC 59.705 44.000 0.00 0.00 0.00 4.35
4417 4588 6.313905 CACCACAGTTACTAGAGCAAATAAGG 59.686 42.308 0.00 0.00 0.00 2.69
4421 4592 5.483685 TCACCACAGTTACTAGAGCAAAT 57.516 39.130 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.