Multiple sequence alignment - TraesCS7D01G496000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G496000 chr7D 100.000 3151 0 0 724 3874 602849098 602845948 0.000000e+00 5819.0
1 TraesCS7D01G496000 chr7D 100.000 371 0 0 1 371 602849821 602849451 0.000000e+00 686.0
2 TraesCS7D01G496000 chr7D 79.431 457 83 10 2397 2846 510324837 510325289 2.910000e-81 313.0
3 TraesCS7D01G496000 chr7D 85.597 243 33 2 1098 1340 510323404 510323644 1.790000e-63 254.0
4 TraesCS7D01G496000 chr7D 94.410 161 7 1 3714 3874 569206355 569206513 2.990000e-61 246.0
5 TraesCS7D01G496000 chr7D 100.000 49 0 0 31 79 197146409 197146361 1.480000e-14 91.6
6 TraesCS7D01G496000 chr7D 100.000 29 0 0 3592 3620 93783224 93783196 2.000000e-03 54.7
7 TraesCS7D01G496000 chr7A 89.791 2968 200 60 802 3720 694517950 694515037 0.000000e+00 3707.0
8 TraesCS7D01G496000 chr7A 92.953 298 8 5 77 371 694518307 694518020 4.630000e-114 422.0
9 TraesCS7D01G496000 chr7A 87.678 211 26 0 1130 1340 581035265 581035475 2.990000e-61 246.0
10 TraesCS7D01G496000 chr7A 92.500 160 10 1 3715 3874 705629393 705629550 1.080000e-55 228.0
11 TraesCS7D01G496000 chr7A 100.000 29 0 0 3592 3620 96558811 96558783 2.000000e-03 54.7
12 TraesCS7D01G496000 chr7A 92.105 38 2 1 3590 3627 200719550 200719586 7.000000e-03 52.8
13 TraesCS7D01G496000 chr7B 94.746 1732 80 7 1419 3141 683468397 683466668 0.000000e+00 2684.0
14 TraesCS7D01G496000 chr7B 90.806 620 36 7 764 1382 683468995 683468396 0.000000e+00 809.0
15 TraesCS7D01G496000 chr7B 79.386 456 85 8 2397 2846 538572394 538572846 2.910000e-81 313.0
16 TraesCS7D01G496000 chr7B 86.026 229 32 0 1112 1340 538570958 538571186 2.990000e-61 246.0
17 TraesCS7D01G496000 chr7B 83.688 141 9 3 231 371 683469233 683469107 1.890000e-23 121.0
18 TraesCS7D01G496000 chr7B 100.000 31 0 0 1 31 629046165 629046195 1.500000e-04 58.4
19 TraesCS7D01G496000 chr7B 100.000 31 0 0 1 31 724809575 724809545 1.500000e-04 58.4
20 TraesCS7D01G496000 chr3A 79.167 456 84 10 2398 2846 175846163 175846614 4.860000e-79 305.0
21 TraesCS7D01G496000 chr3A 97.059 34 0 1 3592 3624 494040293 494040326 5.410000e-04 56.5
22 TraesCS7D01G496000 chr3D 78.993 457 83 12 2398 2846 156212226 156212677 2.260000e-77 300.0
23 TraesCS7D01G496000 chr3D 86.957 207 26 1 1141 1347 156210829 156211034 8.370000e-57 231.0
24 TraesCS7D01G496000 chr3D 90.303 165 14 2 3710 3874 33332040 33331878 8.430000e-52 215.0
25 TraesCS7D01G496000 chr3D 96.429 56 1 1 25 80 83325738 83325684 1.480000e-14 91.6
26 TraesCS7D01G496000 chr3D 100.000 31 0 0 1 31 33157161 33157131 1.500000e-04 58.4
27 TraesCS7D01G496000 chr3B 78.289 456 88 10 2398 2846 225316113 225315662 2.280000e-72 283.0
28 TraesCS7D01G496000 chr3B 85.780 218 30 1 1130 1347 225319822 225319606 3.010000e-56 230.0
29 TraesCS7D01G496000 chr3B 98.039 51 1 0 29 79 102577287 102577337 5.330000e-14 89.8
30 TraesCS7D01G496000 chr3B 94.545 55 2 1 25 79 279652616 279652669 2.480000e-12 84.2
31 TraesCS7D01G496000 chr6A 92.903 155 9 1 3720 3874 346595219 346595371 1.400000e-54 224.0
32 TraesCS7D01G496000 chr6A 97.959 49 1 0 29 77 610392016 610391968 6.900000e-13 86.1
33 TraesCS7D01G496000 chr6A 100.000 31 0 0 3 33 23971970 23971940 1.500000e-04 58.4
34 TraesCS7D01G496000 chr6A 100.000 31 0 0 1 31 70972678 70972648 1.500000e-04 58.4
35 TraesCS7D01G496000 chr6A 100.000 31 0 0 1 31 234020837 234020807 1.500000e-04 58.4
36 TraesCS7D01G496000 chr6A 96.774 31 1 0 3590 3620 565468895 565468865 7.000000e-03 52.8
37 TraesCS7D01G496000 chr5D 92.903 155 9 1 3720 3874 301630508 301630356 1.400000e-54 224.0
38 TraesCS7D01G496000 chr5D 89.714 175 12 4 3700 3874 106691559 106691727 6.520000e-53 219.0
39 TraesCS7D01G496000 chr5D 96.364 55 1 1 25 79 448540391 448540444 5.330000e-14 89.8
40 TraesCS7D01G496000 chr5D 98.000 50 1 0 30 79 345037232 345037281 1.920000e-13 87.9
41 TraesCS7D01G496000 chr5D 100.000 31 0 0 1 31 422014515 422014485 1.500000e-04 58.4
42 TraesCS7D01G496000 chr5D 94.286 35 2 0 3590 3624 307271496 307271462 2.000000e-03 54.7
43 TraesCS7D01G496000 chr1A 92.405 158 10 1 3717 3874 586293483 586293328 1.400000e-54 224.0
44 TraesCS7D01G496000 chr2D 91.824 159 10 2 3717 3874 621120341 621120185 6.520000e-53 219.0
45 TraesCS7D01G496000 chr2D 83.929 112 16 2 1900 2010 42933822 42933712 5.290000e-19 106.0
46 TraesCS7D01G496000 chr2D 83.784 111 18 0 1900 2010 79686675 79686785 5.290000e-19 106.0
47 TraesCS7D01G496000 chr2D 83.929 112 16 2 1900 2010 79874463 79874573 5.290000e-19 106.0
48 TraesCS7D01G496000 chr2A 91.772 158 11 1 3717 3874 732991036 732990881 6.520000e-53 219.0
49 TraesCS7D01G496000 chr2A 83.929 112 16 2 1900 2010 80476344 80476454 5.290000e-19 106.0
50 TraesCS7D01G496000 chr4B 86.179 123 17 0 1889 2011 9695336 9695458 2.430000e-27 134.0
51 TraesCS7D01G496000 chr4B 100.000 31 0 0 1 31 633669034 633669064 1.500000e-04 58.4
52 TraesCS7D01G496000 chr4B 100.000 30 0 0 3592 3621 203859807 203859836 5.410000e-04 56.5
53 TraesCS7D01G496000 chr4D 84.553 123 19 0 1889 2011 5579924 5580046 5.260000e-24 122.0
54 TraesCS7D01G496000 chr4D 100.000 28 0 0 3590 3617 169122974 169123001 7.000000e-03 52.8
55 TraesCS7D01G496000 chr2B 82.883 111 19 0 1900 2010 131180741 131180851 2.460000e-17 100.0
56 TraesCS7D01G496000 chr5B 98.039 51 1 0 29 79 552489324 552489374 5.330000e-14 89.8
57 TraesCS7D01G496000 chr1B 94.737 57 3 0 29 85 429812000 429811944 5.330000e-14 89.8
58 TraesCS7D01G496000 chr5A 100.000 32 0 0 1 32 45751309 45751340 4.180000e-05 60.2
59 TraesCS7D01G496000 chr4A 97.143 35 0 1 3592 3626 715428784 715428751 1.500000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G496000 chr7D 602845948 602849821 3873 True 3252.500000 5819 100.000000 1 3874 2 chr7D.!!$R3 3873
1 TraesCS7D01G496000 chr7D 510323404 510325289 1885 False 283.500000 313 82.514000 1098 2846 2 chr7D.!!$F2 1748
2 TraesCS7D01G496000 chr7A 694515037 694518307 3270 True 2064.500000 3707 91.372000 77 3720 2 chr7A.!!$R2 3643
3 TraesCS7D01G496000 chr7B 683466668 683469233 2565 True 1204.666667 2684 89.746667 231 3141 3 chr7B.!!$R2 2910
4 TraesCS7D01G496000 chr7B 538570958 538572846 1888 False 279.500000 313 82.706000 1112 2846 2 chr7B.!!$F2 1734
5 TraesCS7D01G496000 chr3D 156210829 156212677 1848 False 265.500000 300 82.975000 1141 2846 2 chr3D.!!$F1 1705
6 TraesCS7D01G496000 chr3B 225315662 225319822 4160 True 256.500000 283 82.034500 1130 2846 2 chr3B.!!$R1 1716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 927 0.178813 AAACCCTATCCCACCCACCT 60.179 55.0 0.0 0.0 0.00 4.00 F
1017 1047 0.827507 GCATGGACACCAACCCAGTT 60.828 55.0 0.0 0.0 36.95 3.16 F
1020 1050 0.850100 TGGACACCAACCCAGTTGAT 59.150 50.0 9.0 0.0 45.28 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 4557 1.815003 CCCTTGAGGTTGATCTTGTGC 59.185 52.381 0.00 0.00 0.00 4.57 R
2289 4926 3.286404 CCATGGATTTGGTGCAGGA 57.714 52.632 5.56 0.00 30.96 3.86 R
2970 5643 4.245660 TCGAACTAATGTTGAGCTCAAGG 58.754 43.478 29.13 17.59 36.39 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.592546 GGGAACGTCTCCTCCTACT 57.407 57.895 13.94 0.00 44.68 2.57
27 28 1.104630 GGGAACGTCTCCTCCTACTG 58.895 60.000 13.94 0.00 44.68 2.74
28 29 1.340795 GGGAACGTCTCCTCCTACTGA 60.341 57.143 13.94 0.00 44.68 3.41
29 30 2.444421 GGAACGTCTCCTCCTACTGAA 58.556 52.381 8.87 0.00 41.61 3.02
30 31 2.824341 GGAACGTCTCCTCCTACTGAAA 59.176 50.000 8.87 0.00 41.61 2.69
31 32 3.257624 GGAACGTCTCCTCCTACTGAAAA 59.742 47.826 8.87 0.00 41.61 2.29
32 33 3.938289 ACGTCTCCTCCTACTGAAAAC 57.062 47.619 0.00 0.00 0.00 2.43
33 34 3.498334 ACGTCTCCTCCTACTGAAAACT 58.502 45.455 0.00 0.00 0.00 2.66
34 35 4.660168 ACGTCTCCTCCTACTGAAAACTA 58.340 43.478 0.00 0.00 0.00 2.24
35 36 5.262804 ACGTCTCCTCCTACTGAAAACTAT 58.737 41.667 0.00 0.00 0.00 2.12
36 37 5.715753 ACGTCTCCTCCTACTGAAAACTATT 59.284 40.000 0.00 0.00 0.00 1.73
37 38 6.210984 ACGTCTCCTCCTACTGAAAACTATTT 59.789 38.462 0.00 0.00 0.00 1.40
38 39 7.097834 CGTCTCCTCCTACTGAAAACTATTTT 58.902 38.462 0.00 0.00 35.12 1.82
39 40 8.248945 CGTCTCCTCCTACTGAAAACTATTTTA 58.751 37.037 0.00 0.00 31.94 1.52
40 41 9.589111 GTCTCCTCCTACTGAAAACTATTTTAG 57.411 37.037 0.00 0.00 37.95 1.85
41 42 8.258708 TCTCCTCCTACTGAAAACTATTTTAGC 58.741 37.037 0.00 0.00 36.01 3.09
42 43 7.039882 TCCTCCTACTGAAAACTATTTTAGCG 58.960 38.462 0.00 0.00 36.01 4.26
43 44 6.238130 CCTCCTACTGAAAACTATTTTAGCGC 60.238 42.308 0.00 0.00 36.01 5.92
44 45 5.290158 TCCTACTGAAAACTATTTTAGCGCG 59.710 40.000 0.00 0.00 36.01 6.86
45 46 3.743886 ACTGAAAACTATTTTAGCGCGC 58.256 40.909 26.66 26.66 36.01 6.86
46 47 2.764768 TGAAAACTATTTTAGCGCGCG 58.235 42.857 28.44 28.44 31.94 6.86
47 48 2.412429 TGAAAACTATTTTAGCGCGCGA 59.588 40.909 37.18 19.65 31.94 5.87
48 49 3.120615 TGAAAACTATTTTAGCGCGCGAA 60.121 39.130 37.18 25.07 31.94 4.70
49 50 3.458779 AAACTATTTTAGCGCGCGAAA 57.541 38.095 37.18 31.06 0.00 3.46
50 51 2.430828 ACTATTTTAGCGCGCGAAAC 57.569 45.000 33.79 16.84 0.00 2.78
51 52 1.997606 ACTATTTTAGCGCGCGAAACT 59.002 42.857 33.79 29.98 0.00 2.66
52 53 2.414138 ACTATTTTAGCGCGCGAAACTT 59.586 40.909 33.79 25.95 0.00 2.66
53 54 2.325509 ATTTTAGCGCGCGAAACTTT 57.674 40.000 33.79 20.65 0.00 2.66
54 55 2.108178 TTTTAGCGCGCGAAACTTTT 57.892 40.000 33.79 14.34 0.00 2.27
55 56 2.945798 TTTAGCGCGCGAAACTTTTA 57.054 40.000 37.18 12.09 0.00 1.52
56 57 3.458779 TTTAGCGCGCGAAACTTTTAT 57.541 38.095 37.18 11.15 0.00 1.40
57 58 2.429213 TAGCGCGCGAAACTTTTATG 57.571 45.000 37.18 0.00 0.00 1.90
58 59 0.793104 AGCGCGCGAAACTTTTATGC 60.793 50.000 37.18 11.07 0.00 3.14
59 60 1.893666 CGCGCGAAACTTTTATGCG 59.106 52.632 28.94 13.56 43.57 4.73
61 62 2.265446 CGCGAAACTTTTATGCGCC 58.735 52.632 4.18 0.00 44.31 6.53
62 63 0.179200 CGCGAAACTTTTATGCGCCT 60.179 50.000 4.18 0.00 44.31 5.52
63 64 1.259316 GCGAAACTTTTATGCGCCTG 58.741 50.000 4.18 0.00 41.65 4.85
64 65 1.401018 GCGAAACTTTTATGCGCCTGT 60.401 47.619 4.18 0.00 41.65 4.00
65 66 2.920647 GCGAAACTTTTATGCGCCTGTT 60.921 45.455 4.18 0.00 41.65 3.16
66 67 2.656422 CGAAACTTTTATGCGCCTGTTG 59.344 45.455 4.18 0.00 0.00 3.33
67 68 2.723124 AACTTTTATGCGCCTGTTGG 57.277 45.000 4.18 0.00 0.00 3.77
68 69 1.904287 ACTTTTATGCGCCTGTTGGA 58.096 45.000 4.18 0.00 34.57 3.53
69 70 1.812571 ACTTTTATGCGCCTGTTGGAG 59.187 47.619 4.18 0.00 36.16 3.86
70 71 2.083774 CTTTTATGCGCCTGTTGGAGA 58.916 47.619 4.18 0.00 34.95 3.71
71 72 2.418368 TTTATGCGCCTGTTGGAGAT 57.582 45.000 4.18 0.00 34.95 2.75
72 73 1.667236 TTATGCGCCTGTTGGAGATG 58.333 50.000 4.18 0.00 34.95 2.90
73 74 0.815213 TATGCGCCTGTTGGAGATGC 60.815 55.000 4.18 0.00 34.95 3.91
74 75 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
75 76 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
138 139 1.518572 GATGCACCTGGACGTACCG 60.519 63.158 0.00 0.00 42.61 4.02
180 182 0.531532 TTGCCCAAAATGCAACACGG 60.532 50.000 0.00 0.00 43.36 4.94
281 283 2.184322 GCGCCTGATGACCTTCGA 59.816 61.111 0.00 0.00 0.00 3.71
282 284 1.227380 GCGCCTGATGACCTTCGAT 60.227 57.895 0.00 0.00 0.00 3.59
283 285 1.493950 GCGCCTGATGACCTTCGATG 61.494 60.000 0.00 0.00 0.00 3.84
284 286 0.877649 CGCCTGATGACCTTCGATGG 60.878 60.000 15.45 15.45 0.00 3.51
285 287 0.179000 GCCTGATGACCTTCGATGGT 59.821 55.000 22.00 22.00 44.10 3.55
286 288 1.407437 GCCTGATGACCTTCGATGGTT 60.407 52.381 22.61 9.24 41.00 3.67
287 289 2.941415 GCCTGATGACCTTCGATGGTTT 60.941 50.000 22.61 14.03 41.00 3.27
347 349 2.365617 TCACCAGAGAGGAGTTCACAAC 59.634 50.000 0.00 0.00 41.22 3.32
743 748 3.866883 CAAAACCCAAGGCGACATATT 57.133 42.857 0.00 0.00 0.00 1.28
744 749 4.186856 CAAAACCCAAGGCGACATATTT 57.813 40.909 0.00 0.00 0.00 1.40
745 750 5.317733 CAAAACCCAAGGCGACATATTTA 57.682 39.130 0.00 0.00 0.00 1.40
779 809 4.692228 TGGAACAAACAATTTTCTCCTGC 58.308 39.130 0.00 0.00 31.92 4.85
784 814 6.403866 ACAAACAATTTTCTCCTGCACATA 57.596 33.333 0.00 0.00 0.00 2.29
797 827 1.135717 TGCACATAATCTGTTGCACGC 60.136 47.619 0.00 0.00 37.14 5.34
799 829 1.739466 CACATAATCTGTTGCACGCCT 59.261 47.619 0.00 0.00 35.29 5.52
800 830 2.162208 CACATAATCTGTTGCACGCCTT 59.838 45.455 0.00 0.00 35.29 4.35
822 852 4.768659 TTTTGTAACAAACGCATGCAAG 57.231 36.364 19.57 4.59 0.00 4.01
826 856 2.869233 AACAAACGCATGCAAGTCTT 57.131 40.000 19.57 0.00 0.00 3.01
897 927 0.178813 AAACCCTATCCCACCCACCT 60.179 55.000 0.00 0.00 0.00 4.00
970 1000 2.984155 GATCGATCTCGGCCGGGA 60.984 66.667 33.43 33.43 40.29 5.14
986 1016 2.891580 CCGGGAGCATATATATAGGCGT 59.108 50.000 20.34 11.11 44.08 5.68
1017 1047 0.827507 GCATGGACACCAACCCAGTT 60.828 55.000 0.00 0.00 36.95 3.16
1020 1050 0.850100 TGGACACCAACCCAGTTGAT 59.150 50.000 9.00 0.00 45.28 2.57
1028 1058 3.263425 ACCAACCCAGTTGATACCAGTAG 59.737 47.826 9.00 0.00 45.28 2.57
1283 1313 1.751032 CGCCCTCTTCTACTGGCTCTA 60.751 57.143 0.00 0.00 41.80 2.43
1345 1375 3.305720 TGGCTCAACGGAGGTAGATTAT 58.694 45.455 0.00 0.00 41.67 1.28
1388 1421 1.889891 GCTAGATGCGATCTACGAGC 58.110 55.000 0.00 3.81 45.77 5.03
1390 1423 2.673862 GCTAGATGCGATCTACGAGCTA 59.326 50.000 0.00 0.00 45.77 3.32
1391 1424 3.242284 GCTAGATGCGATCTACGAGCTAG 60.242 52.174 0.00 0.00 45.77 3.42
1393 1426 3.927854 AGATGCGATCTACGAGCTAGTA 58.072 45.455 6.52 6.52 45.77 1.82
1395 1428 1.799403 TGCGATCTACGAGCTAGTAGC 59.201 52.381 24.51 14.62 45.77 3.58
1396 1429 7.809411 AGATGCGATCTACGAGCTAGTAGCT 62.809 48.000 24.71 24.71 46.49 3.32
1397 1430 8.510875 AGATGCGATCTACGAGCTAGTAGCTA 62.511 46.154 24.51 9.32 44.86 3.32
1409 1451 5.251601 GCTAGTAGCTAGTTAGTGTTGCT 57.748 43.478 15.16 0.00 38.45 3.91
1468 2851 6.860023 GCATGACATGAAACTAATCTAATGGC 59.140 38.462 19.76 0.00 0.00 4.40
1997 4506 4.118995 TACGCCGGCCACTACGTG 62.119 66.667 23.46 6.49 39.43 4.49
2289 4926 0.416231 TTACAGCCTCTACACCCCCT 59.584 55.000 0.00 0.00 0.00 4.79
2405 5075 1.518572 CAGGCCCTACTACAACGCG 60.519 63.158 3.53 3.53 0.00 6.01
2442 5112 3.276857 GACTACCACATCCTCGACTACA 58.723 50.000 0.00 0.00 0.00 2.74
2864 5537 1.379576 GCTCTCTGCCAAGGCCATT 60.380 57.895 5.01 0.00 41.09 3.16
2929 5602 7.796197 GCTTAGAGATCGTTTGATTTTATCAGC 59.204 37.037 0.00 0.00 40.94 4.26
2941 5614 7.124573 TGATTTTATCAGCTAGCTAGGTTCA 57.875 36.000 22.58 17.76 33.59 3.18
2970 5643 3.075148 GGTCAGGTTAGAGCTCAAAACC 58.925 50.000 29.95 29.95 42.48 3.27
2971 5644 3.075148 GTCAGGTTAGAGCTCAAAACCC 58.925 50.000 31.83 20.51 43.04 4.11
2972 5645 2.979678 TCAGGTTAGAGCTCAAAACCCT 59.020 45.455 31.83 22.06 43.04 4.34
2982 5655 3.632855 CTCAAAACCCTTGAGCTCAAC 57.367 47.619 25.16 0.00 39.36 3.18
3121 5813 7.254227 TCGTTTCAATGTGCTTAACTAGTTT 57.746 32.000 14.49 0.00 0.00 2.66
3126 5818 5.697178 TCAATGTGCTTAACTAGTTTGCGTA 59.303 36.000 14.49 11.37 0.00 4.42
3130 5822 5.050634 TGTGCTTAACTAGTTTGCGTACAAG 60.051 40.000 14.49 10.21 37.04 3.16
3133 5825 5.404667 GCTTAACTAGTTTGCGTACAAGTCT 59.595 40.000 14.49 0.00 37.04 3.24
3148 5840 6.238266 CGTACAAGTCTGTCAAAGCCTAAAAA 60.238 38.462 0.00 0.00 36.96 1.94
3175 5877 9.598517 ACAGTACAATTTCATGTTTCAAAATGT 57.401 25.926 0.00 4.36 34.75 2.71
3192 5894 7.881142 TCAAAATGTAAGAACAATCCAATCGT 58.119 30.769 0.00 0.00 39.58 3.73
3193 5895 7.807433 TCAAAATGTAAGAACAATCCAATCGTG 59.193 33.333 0.00 0.00 39.58 4.35
3194 5896 4.678509 TGTAAGAACAATCCAATCGTGC 57.321 40.909 0.00 0.00 30.91 5.34
3205 5907 1.335872 CCAATCGTGCACTTCAAACCC 60.336 52.381 16.19 0.00 0.00 4.11
3206 5908 1.608590 CAATCGTGCACTTCAAACCCT 59.391 47.619 16.19 0.00 0.00 4.34
3208 5910 1.008538 CGTGCACTTCAAACCCTGC 60.009 57.895 16.19 0.00 0.00 4.85
3209 5911 1.723608 CGTGCACTTCAAACCCTGCA 61.724 55.000 16.19 0.00 37.30 4.41
3210 5912 2.114638 TGCACTTCAAACCCTGCAC 58.885 52.632 0.00 0.00 34.73 4.57
3225 6000 3.636764 CCCTGCACTCCTAAAGTTGTTTT 59.363 43.478 0.00 0.00 35.45 2.43
3228 6003 6.438763 CCTGCACTCCTAAAGTTGTTTTAAG 58.561 40.000 0.00 0.00 35.45 1.85
3235 6010 9.895138 ACTCCTAAAGTTGTTTTAAGTGAGTAA 57.105 29.630 0.00 0.00 35.32 2.24
3269 6044 6.759497 AGCAACTAGAAAATGTTATCACCC 57.241 37.500 0.00 0.00 0.00 4.61
3270 6045 5.652452 AGCAACTAGAAAATGTTATCACCCC 59.348 40.000 0.00 0.00 0.00 4.95
3271 6046 5.163550 GCAACTAGAAAATGTTATCACCCCC 60.164 44.000 0.00 0.00 0.00 5.40
3369 6144 8.986477 AATCCTTGCAAAATACAGATACAAAC 57.014 30.769 0.00 0.00 0.00 2.93
3396 6171 5.543714 TCTTTTCGCTAGTCCATTAACACA 58.456 37.500 0.00 0.00 0.00 3.72
3397 6172 6.170506 TCTTTTCGCTAGTCCATTAACACAT 58.829 36.000 0.00 0.00 0.00 3.21
3398 6173 5.794687 TTTCGCTAGTCCATTAACACATG 57.205 39.130 0.00 0.00 0.00 3.21
3399 6174 4.465632 TCGCTAGTCCATTAACACATGT 57.534 40.909 0.00 0.00 0.00 3.21
3400 6175 5.585820 TCGCTAGTCCATTAACACATGTA 57.414 39.130 0.00 0.00 0.00 2.29
3401 6176 6.156748 TCGCTAGTCCATTAACACATGTAT 57.843 37.500 0.00 0.00 0.00 2.29
3402 6177 5.983118 TCGCTAGTCCATTAACACATGTATG 59.017 40.000 0.00 0.00 0.00 2.39
3403 6178 5.333339 CGCTAGTCCATTAACACATGTATGC 60.333 44.000 0.00 0.00 0.00 3.14
3404 6179 5.760253 GCTAGTCCATTAACACATGTATGCT 59.240 40.000 0.00 0.00 0.00 3.79
3405 6180 6.929049 GCTAGTCCATTAACACATGTATGCTA 59.071 38.462 0.00 0.00 0.00 3.49
3406 6181 7.116948 GCTAGTCCATTAACACATGTATGCTAG 59.883 40.741 0.00 7.20 0.00 3.42
3407 6182 6.291377 AGTCCATTAACACATGTATGCTAGG 58.709 40.000 0.00 0.00 0.00 3.02
3408 6183 6.099701 AGTCCATTAACACATGTATGCTAGGA 59.900 38.462 0.00 0.00 0.00 2.94
3418 6193 5.303078 ACATGTATGCTAGGAAGTGTAGGAG 59.697 44.000 0.00 0.00 0.00 3.69
3431 6206 0.321298 GTAGGAGGGTGAGCGCAAAA 60.321 55.000 11.47 0.00 0.00 2.44
3435 6210 1.402852 GGAGGGTGAGCGCAAAATTTC 60.403 52.381 11.47 0.00 0.00 2.17
3439 6214 2.262211 GGTGAGCGCAAAATTTCCATC 58.738 47.619 11.47 0.00 0.00 3.51
3444 6219 6.459573 GGTGAGCGCAAAATTTCCATCTTATA 60.460 38.462 11.47 0.00 0.00 0.98
3446 6221 6.318648 TGAGCGCAAAATTTCCATCTTATACT 59.681 34.615 11.47 0.00 0.00 2.12
3476 6251 7.996644 AGCTTAGCTAGTACTTACTCTCATTCT 59.003 37.037 4.30 0.00 36.99 2.40
3485 6260 6.458232 ACTTACTCTCATTCTACGCAAGAT 57.542 37.500 0.00 0.00 43.62 2.40
3513 6288 9.179909 TGTCACTTAAAAAGTTGATTTAGGTCA 57.820 29.630 0.00 0.00 40.46 4.02
3525 6300 8.837389 AGTTGATTTAGGTCACTACAGAAAAAC 58.163 33.333 0.00 0.00 0.00 2.43
3547 6322 6.788684 ACAGTGTATACATTTGTAACGCAA 57.211 33.333 18.80 0.00 33.76 4.85
3563 6338 2.039879 ACGCAATTCCAAGTACTCCCTT 59.960 45.455 0.00 0.00 0.00 3.95
3564 6339 2.678336 CGCAATTCCAAGTACTCCCTTC 59.322 50.000 0.00 0.00 0.00 3.46
3569 6344 2.385803 TCCAAGTACTCCCTTCGATCC 58.614 52.381 0.00 0.00 0.00 3.36
3574 6349 5.012148 CCAAGTACTCCCTTCGATCCATATT 59.988 44.000 0.00 0.00 0.00 1.28
3579 6354 6.749036 ACTCCCTTCGATCCATATTACTTT 57.251 37.500 0.00 0.00 0.00 2.66
3590 6365 7.967854 CGATCCATATTACTTTTTGCTCAAACA 59.032 33.333 0.00 0.00 0.00 2.83
3606 6381 7.761409 TGCTCAAACAACAAGTAATATGGATC 58.239 34.615 0.00 0.00 0.00 3.36
3607 6382 7.392953 TGCTCAAACAACAAGTAATATGGATCA 59.607 33.333 0.00 0.00 0.00 2.92
3611 6386 8.400947 CAAACAACAAGTAATATGGATCAGAGG 58.599 37.037 0.00 0.00 0.00 3.69
3614 6389 6.678568 ACAAGTAATATGGATCAGAGGGAG 57.321 41.667 0.00 0.00 0.00 4.30
3679 6454 9.884465 GTTGATGACATTTATATGGCTTAAGAC 57.116 33.333 6.67 3.27 40.69 3.01
3706 6483 3.069586 CACTACCAGAGAACTCCACACAA 59.930 47.826 0.00 0.00 0.00 3.33
3713 6490 6.176183 CCAGAGAACTCCACACAAGAATATT 58.824 40.000 0.00 0.00 0.00 1.28
3722 6499 9.614792 ACTCCACACAAGAATATTAATTAGGAC 57.385 33.333 0.00 0.00 0.00 3.85
3723 6500 8.657074 TCCACACAAGAATATTAATTAGGACG 57.343 34.615 0.00 0.00 0.00 4.79
3724 6501 7.225931 TCCACACAAGAATATTAATTAGGACGC 59.774 37.037 0.00 0.00 0.00 5.19
3725 6502 7.352739 CACACAAGAATATTAATTAGGACGCC 58.647 38.462 0.00 0.00 0.00 5.68
3726 6503 6.202188 ACACAAGAATATTAATTAGGACGCCG 59.798 38.462 0.00 0.00 0.00 6.46
3727 6504 6.422701 CACAAGAATATTAATTAGGACGCCGA 59.577 38.462 0.00 0.00 0.00 5.54
3728 6505 7.117812 CACAAGAATATTAATTAGGACGCCGAT 59.882 37.037 0.00 0.00 0.00 4.18
3729 6506 8.308931 ACAAGAATATTAATTAGGACGCCGATA 58.691 33.333 0.00 0.00 0.00 2.92
3730 6507 9.314321 CAAGAATATTAATTAGGACGCCGATAT 57.686 33.333 0.00 0.00 0.00 1.63
3731 6508 9.530633 AAGAATATTAATTAGGACGCCGATATC 57.469 33.333 0.00 0.00 0.00 1.63
3732 6509 8.142551 AGAATATTAATTAGGACGCCGATATCC 58.857 37.037 0.00 0.00 34.98 2.59
3733 6510 5.670792 ATTAATTAGGACGCCGATATCCA 57.329 39.130 0.00 0.00 37.47 3.41
3734 6511 3.314541 AATTAGGACGCCGATATCCAC 57.685 47.619 0.00 0.00 37.47 4.02
3735 6512 0.963962 TTAGGACGCCGATATCCACC 59.036 55.000 0.00 0.00 37.47 4.61
3736 6513 0.178984 TAGGACGCCGATATCCACCA 60.179 55.000 0.00 0.00 37.47 4.17
3737 6514 1.300697 GGACGCCGATATCCACCAC 60.301 63.158 0.00 0.00 34.87 4.16
3738 6515 1.440060 GACGCCGATATCCACCACA 59.560 57.895 0.00 0.00 0.00 4.17
3739 6516 0.874607 GACGCCGATATCCACCACAC 60.875 60.000 0.00 0.00 0.00 3.82
3740 6517 1.949133 CGCCGATATCCACCACACG 60.949 63.158 0.00 0.00 0.00 4.49
3741 6518 1.143183 GCCGATATCCACCACACGT 59.857 57.895 0.00 0.00 0.00 4.49
3742 6519 1.151777 GCCGATATCCACCACACGTG 61.152 60.000 15.48 15.48 42.62 4.49
3743 6520 0.174845 CCGATATCCACCACACGTGT 59.825 55.000 17.22 17.22 41.26 4.49
3744 6521 1.277326 CGATATCCACCACACGTGTG 58.723 55.000 36.13 36.13 45.23 3.82
3756 6533 4.937696 CACACGTGTGGAATAATAAGCA 57.062 40.909 35.65 0.00 42.10 3.91
3757 6534 5.484173 CACACGTGTGGAATAATAAGCAT 57.516 39.130 35.65 0.00 42.10 3.79
3758 6535 5.879237 CACACGTGTGGAATAATAAGCATT 58.121 37.500 35.65 0.00 42.10 3.56
3759 6536 5.965334 CACACGTGTGGAATAATAAGCATTC 59.035 40.000 35.65 0.00 42.10 2.67
3760 6537 5.197549 CACGTGTGGAATAATAAGCATTCG 58.802 41.667 7.58 0.00 33.94 3.34
3761 6538 4.211389 CGTGTGGAATAATAAGCATTCGC 58.789 43.478 0.00 0.00 33.94 4.70
3762 6539 4.537015 GTGTGGAATAATAAGCATTCGCC 58.463 43.478 0.00 0.00 39.83 5.54
3763 6540 3.568007 TGTGGAATAATAAGCATTCGCCC 59.432 43.478 0.00 0.00 39.83 6.13
3764 6541 3.568007 GTGGAATAATAAGCATTCGCCCA 59.432 43.478 0.00 0.00 39.83 5.36
3765 6542 3.568007 TGGAATAATAAGCATTCGCCCAC 59.432 43.478 0.00 0.00 39.83 4.61
3766 6543 3.568007 GGAATAATAAGCATTCGCCCACA 59.432 43.478 0.00 0.00 39.83 4.17
3767 6544 4.537015 GAATAATAAGCATTCGCCCACAC 58.463 43.478 0.00 0.00 39.83 3.82
3768 6545 1.832883 AATAAGCATTCGCCCACACA 58.167 45.000 0.00 0.00 39.83 3.72
3769 6546 1.094785 ATAAGCATTCGCCCACACAC 58.905 50.000 0.00 0.00 39.83 3.82
3770 6547 0.250510 TAAGCATTCGCCCACACACA 60.251 50.000 0.00 0.00 39.83 3.72
3771 6548 0.895100 AAGCATTCGCCCACACACAT 60.895 50.000 0.00 0.00 39.83 3.21
3772 6549 1.137404 GCATTCGCCCACACACATC 59.863 57.895 0.00 0.00 0.00 3.06
3773 6550 1.425031 CATTCGCCCACACACATCG 59.575 57.895 0.00 0.00 0.00 3.84
3774 6551 1.003839 ATTCGCCCACACACATCGT 60.004 52.632 0.00 0.00 0.00 3.73
3786 6563 2.845019 ACATCGTGTGTGGCATGAG 58.155 52.632 0.00 0.00 45.30 2.90
3787 6564 0.035317 ACATCGTGTGTGGCATGAGT 59.965 50.000 0.00 0.00 45.30 3.41
3788 6565 1.275010 ACATCGTGTGTGGCATGAGTA 59.725 47.619 0.00 0.00 45.30 2.59
3789 6566 1.929169 CATCGTGTGTGGCATGAGTAG 59.071 52.381 0.00 0.00 45.30 2.57
3790 6567 0.246360 TCGTGTGTGGCATGAGTAGG 59.754 55.000 0.00 0.00 38.14 3.18
3791 6568 0.740868 CGTGTGTGGCATGAGTAGGG 60.741 60.000 0.00 0.00 36.21 3.53
3792 6569 0.392998 GTGTGTGGCATGAGTAGGGG 60.393 60.000 0.00 0.00 0.00 4.79
3793 6570 1.224592 GTGTGGCATGAGTAGGGGG 59.775 63.158 0.00 0.00 0.00 5.40
3794 6571 2.193248 GTGGCATGAGTAGGGGGC 59.807 66.667 0.00 0.00 0.00 5.80
3795 6572 2.286045 TGGCATGAGTAGGGGGCA 60.286 61.111 0.00 0.00 0.00 5.36
3796 6573 2.377810 TGGCATGAGTAGGGGGCAG 61.378 63.158 0.00 0.00 0.00 4.85
3797 6574 2.203266 GCATGAGTAGGGGGCAGC 60.203 66.667 0.00 0.00 0.00 5.25
3798 6575 2.512896 CATGAGTAGGGGGCAGCC 59.487 66.667 1.26 1.26 0.00 4.85
3799 6576 2.774351 ATGAGTAGGGGGCAGCCC 60.774 66.667 24.23 24.23 44.51 5.19
3821 6598 4.947147 GGGCTGTGTGTGGGCGAA 62.947 66.667 0.00 0.00 0.00 4.70
3822 6599 3.660111 GGCTGTGTGTGGGCGAAC 61.660 66.667 0.00 0.00 0.00 3.95
3823 6600 2.899838 GCTGTGTGTGGGCGAACA 60.900 61.111 0.00 0.00 0.00 3.18
3824 6601 2.896801 GCTGTGTGTGGGCGAACAG 61.897 63.158 0.00 0.00 42.35 3.16
3825 6602 1.523711 CTGTGTGTGGGCGAACAGT 60.524 57.895 0.00 0.00 36.20 3.55
3826 6603 0.249699 CTGTGTGTGGGCGAACAGTA 60.250 55.000 0.00 0.00 36.20 2.74
3827 6604 0.249699 TGTGTGTGGGCGAACAGTAG 60.250 55.000 0.00 0.00 0.00 2.57
3828 6605 0.032952 GTGTGTGGGCGAACAGTAGA 59.967 55.000 0.00 0.00 0.00 2.59
3829 6606 0.753867 TGTGTGGGCGAACAGTAGAA 59.246 50.000 0.00 0.00 0.00 2.10
3830 6607 1.346395 TGTGTGGGCGAACAGTAGAAT 59.654 47.619 0.00 0.00 0.00 2.40
3831 6608 2.224426 TGTGTGGGCGAACAGTAGAATT 60.224 45.455 0.00 0.00 0.00 2.17
3832 6609 2.159627 GTGTGGGCGAACAGTAGAATTG 59.840 50.000 0.00 0.00 0.00 2.32
3833 6610 1.130561 GTGGGCGAACAGTAGAATTGC 59.869 52.381 0.00 0.00 0.00 3.56
3834 6611 0.733150 GGGCGAACAGTAGAATTGCC 59.267 55.000 0.00 0.00 40.25 4.52
3835 6612 0.733150 GGCGAACAGTAGAATTGCCC 59.267 55.000 0.00 0.00 35.01 5.36
3836 6613 1.448985 GCGAACAGTAGAATTGCCCA 58.551 50.000 0.00 0.00 0.00 5.36
3837 6614 1.130561 GCGAACAGTAGAATTGCCCAC 59.869 52.381 0.00 0.00 0.00 4.61
3838 6615 2.422597 CGAACAGTAGAATTGCCCACA 58.577 47.619 0.00 0.00 0.00 4.17
3839 6616 2.159627 CGAACAGTAGAATTGCCCACAC 59.840 50.000 0.00 0.00 0.00 3.82
3840 6617 1.808411 ACAGTAGAATTGCCCACACG 58.192 50.000 0.00 0.00 0.00 4.49
3841 6618 1.071699 ACAGTAGAATTGCCCACACGT 59.928 47.619 0.00 0.00 0.00 4.49
3842 6619 1.464608 CAGTAGAATTGCCCACACGTG 59.535 52.381 15.48 15.48 0.00 4.49
3843 6620 1.071699 AGTAGAATTGCCCACACGTGT 59.928 47.619 17.22 17.22 0.00 4.49
3844 6621 1.196808 GTAGAATTGCCCACACGTGTG 59.803 52.381 36.13 36.13 45.23 3.82
3852 6629 3.952675 CACACGTGTGGGCACAGC 61.953 66.667 35.65 0.00 45.50 4.40
3853 6630 4.175337 ACACGTGTGGGCACAGCT 62.175 61.111 22.71 0.00 45.50 4.24
3854 6631 2.030412 CACGTGTGGGCACAGCTA 59.970 61.111 7.58 0.00 45.50 3.32
3855 6632 2.030562 ACGTGTGGGCACAGCTAC 59.969 61.111 0.00 0.00 45.50 3.58
3856 6633 2.343758 CGTGTGGGCACAGCTACT 59.656 61.111 0.00 0.00 45.50 2.57
3857 6634 1.301716 CGTGTGGGCACAGCTACTT 60.302 57.895 0.00 0.00 45.50 2.24
3858 6635 1.291877 CGTGTGGGCACAGCTACTTC 61.292 60.000 0.00 0.00 45.50 3.01
3859 6636 0.250295 GTGTGGGCACAGCTACTTCA 60.250 55.000 0.00 0.00 44.64 3.02
3860 6637 0.692476 TGTGGGCACAGCTACTTCAT 59.308 50.000 0.00 0.00 36.21 2.57
3861 6638 1.089920 GTGGGCACAGCTACTTCATG 58.910 55.000 0.00 0.00 0.00 3.07
3862 6639 0.677731 TGGGCACAGCTACTTCATGC 60.678 55.000 0.00 0.00 35.51 4.06
3864 6641 2.858622 GCACAGCTACTTCATGCCA 58.141 52.632 0.00 0.00 0.00 4.92
3865 6642 0.449388 GCACAGCTACTTCATGCCAC 59.551 55.000 0.00 0.00 0.00 5.01
3866 6643 1.812235 CACAGCTACTTCATGCCACA 58.188 50.000 0.00 0.00 0.00 4.17
3867 6644 1.466167 CACAGCTACTTCATGCCACAC 59.534 52.381 0.00 0.00 0.00 3.82
3868 6645 1.072173 ACAGCTACTTCATGCCACACA 59.928 47.619 0.00 0.00 0.00 3.72
3869 6646 1.466167 CAGCTACTTCATGCCACACAC 59.534 52.381 0.00 0.00 0.00 3.82
3870 6647 0.804989 GCTACTTCATGCCACACACC 59.195 55.000 0.00 0.00 0.00 4.16
3871 6648 1.453155 CTACTTCATGCCACACACCC 58.547 55.000 0.00 0.00 0.00 4.61
3872 6649 0.767998 TACTTCATGCCACACACCCA 59.232 50.000 0.00 0.00 0.00 4.51
3873 6650 0.106268 ACTTCATGCCACACACCCAA 60.106 50.000 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.022155 AGTTTTCAGTAGGAGGAGACGTTC 60.022 45.833 0.00 0.00 0.00 3.95
11 12 3.896272 AGTTTTCAGTAGGAGGAGACGTT 59.104 43.478 0.00 0.00 0.00 3.99
12 13 3.498334 AGTTTTCAGTAGGAGGAGACGT 58.502 45.455 0.00 0.00 0.00 4.34
13 14 5.838531 ATAGTTTTCAGTAGGAGGAGACG 57.161 43.478 0.00 0.00 0.00 4.18
14 15 9.589111 CTAAAATAGTTTTCAGTAGGAGGAGAC 57.411 37.037 0.00 0.00 34.19 3.36
15 16 8.258708 GCTAAAATAGTTTTCAGTAGGAGGAGA 58.741 37.037 0.00 0.00 34.19 3.71
16 17 7.222999 CGCTAAAATAGTTTTCAGTAGGAGGAG 59.777 40.741 0.00 0.00 34.19 3.69
17 18 7.039882 CGCTAAAATAGTTTTCAGTAGGAGGA 58.960 38.462 0.00 0.00 34.19 3.71
18 19 6.238130 GCGCTAAAATAGTTTTCAGTAGGAGG 60.238 42.308 0.00 0.00 34.19 4.30
19 20 6.508088 CGCGCTAAAATAGTTTTCAGTAGGAG 60.508 42.308 5.56 0.00 34.19 3.69
20 21 5.290158 CGCGCTAAAATAGTTTTCAGTAGGA 59.710 40.000 5.56 0.00 34.19 2.94
21 22 5.490213 CGCGCTAAAATAGTTTTCAGTAGG 58.510 41.667 5.56 0.00 34.19 3.18
22 23 4.956184 GCGCGCTAAAATAGTTTTCAGTAG 59.044 41.667 26.67 0.00 34.19 2.57
23 24 4.491280 CGCGCGCTAAAATAGTTTTCAGTA 60.491 41.667 30.48 0.00 34.19 2.74
24 25 3.723835 CGCGCGCTAAAATAGTTTTCAGT 60.724 43.478 30.48 0.00 34.19 3.41
25 26 2.770865 CGCGCGCTAAAATAGTTTTCAG 59.229 45.455 30.48 3.00 34.19 3.02
26 27 2.412429 TCGCGCGCTAAAATAGTTTTCA 59.588 40.909 30.48 0.00 34.19 2.69
27 28 3.029167 TCGCGCGCTAAAATAGTTTTC 57.971 42.857 30.48 0.00 34.19 2.29
28 29 3.458779 TTCGCGCGCTAAAATAGTTTT 57.541 38.095 30.48 0.00 36.67 2.43
29 30 3.120442 AGTTTCGCGCGCTAAAATAGTTT 60.120 39.130 29.00 10.46 0.00 2.66
30 31 2.414138 AGTTTCGCGCGCTAAAATAGTT 59.586 40.909 29.00 11.99 0.00 2.24
31 32 1.997606 AGTTTCGCGCGCTAAAATAGT 59.002 42.857 29.00 13.46 0.00 2.12
32 33 2.713927 AGTTTCGCGCGCTAAAATAG 57.286 45.000 29.00 12.71 0.00 1.73
33 34 3.458779 AAAGTTTCGCGCGCTAAAATA 57.541 38.095 29.00 8.21 0.00 1.40
34 35 2.325509 AAAGTTTCGCGCGCTAAAAT 57.674 40.000 29.00 25.84 0.00 1.82
35 36 2.108178 AAAAGTTTCGCGCGCTAAAA 57.892 40.000 29.00 24.31 0.00 1.52
36 37 2.945798 TAAAAGTTTCGCGCGCTAAA 57.054 40.000 30.48 27.36 0.00 1.85
37 38 2.764768 CATAAAAGTTTCGCGCGCTAA 58.235 42.857 30.48 22.72 0.00 3.09
38 39 1.528198 GCATAAAAGTTTCGCGCGCTA 60.528 47.619 30.48 17.01 0.00 4.26
39 40 0.793104 GCATAAAAGTTTCGCGCGCT 60.793 50.000 30.48 14.48 0.00 5.92
40 41 1.618699 GCATAAAAGTTTCGCGCGC 59.381 52.632 27.95 23.91 0.00 6.86
41 42 1.893666 CGCATAAAAGTTTCGCGCG 59.106 52.632 26.76 26.76 36.10 6.86
43 44 0.179200 AGGCGCATAAAAGTTTCGCG 60.179 50.000 10.83 17.71 45.85 5.87
44 45 1.259316 CAGGCGCATAAAAGTTTCGC 58.741 50.000 10.83 10.09 44.39 4.70
45 46 2.611974 ACAGGCGCATAAAAGTTTCG 57.388 45.000 10.83 0.00 0.00 3.46
46 47 2.986479 CCAACAGGCGCATAAAAGTTTC 59.014 45.455 10.83 0.00 0.00 2.78
47 48 2.625790 TCCAACAGGCGCATAAAAGTTT 59.374 40.909 10.83 0.00 0.00 2.66
48 49 2.228822 CTCCAACAGGCGCATAAAAGTT 59.771 45.455 10.83 0.00 0.00 2.66
49 50 1.812571 CTCCAACAGGCGCATAAAAGT 59.187 47.619 10.83 0.00 0.00 2.66
50 51 2.083774 TCTCCAACAGGCGCATAAAAG 58.916 47.619 10.83 0.00 0.00 2.27
51 52 2.192664 TCTCCAACAGGCGCATAAAA 57.807 45.000 10.83 0.00 0.00 1.52
52 53 2.016318 CATCTCCAACAGGCGCATAAA 58.984 47.619 10.83 0.00 0.00 1.40
53 54 1.667236 CATCTCCAACAGGCGCATAA 58.333 50.000 10.83 0.00 0.00 1.90
54 55 0.815213 GCATCTCCAACAGGCGCATA 60.815 55.000 10.83 0.00 0.00 3.14
55 56 2.117156 GCATCTCCAACAGGCGCAT 61.117 57.895 10.83 0.00 0.00 4.73
56 57 2.747460 GCATCTCCAACAGGCGCA 60.747 61.111 10.83 0.00 0.00 6.09
57 58 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
58 59 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
138 139 0.109597 CAACATGGCGTCAAAGGCTC 60.110 55.000 0.00 0.00 37.59 4.70
180 182 0.233332 GAATGCGCTCTTACCATCGC 59.767 55.000 9.73 0.00 46.78 4.58
219 221 4.502105 AGGGTTTTTCAAAAAGCATGGT 57.498 36.364 22.79 5.12 31.70 3.55
281 283 3.054875 GTCGACCCTAAACCCTAAACCAT 60.055 47.826 3.51 0.00 0.00 3.55
282 284 2.302733 GTCGACCCTAAACCCTAAACCA 59.697 50.000 3.51 0.00 0.00 3.67
283 285 2.302733 TGTCGACCCTAAACCCTAAACC 59.697 50.000 14.12 0.00 0.00 3.27
284 286 3.683365 TGTCGACCCTAAACCCTAAAC 57.317 47.619 14.12 0.00 0.00 2.01
285 287 3.054948 CCATGTCGACCCTAAACCCTAAA 60.055 47.826 14.12 0.00 0.00 1.85
286 288 2.502538 CCATGTCGACCCTAAACCCTAA 59.497 50.000 14.12 0.00 0.00 2.69
287 289 2.112998 CCATGTCGACCCTAAACCCTA 58.887 52.381 14.12 0.00 0.00 3.53
742 747 2.004017 GTTCCATGGTCATCGCGTAAA 58.996 47.619 12.58 0.00 0.00 2.01
743 748 1.066787 TGTTCCATGGTCATCGCGTAA 60.067 47.619 12.58 0.00 0.00 3.18
744 749 0.533032 TGTTCCATGGTCATCGCGTA 59.467 50.000 12.58 0.00 0.00 4.42
745 750 0.321210 TTGTTCCATGGTCATCGCGT 60.321 50.000 12.58 0.00 0.00 6.01
748 753 3.913548 TTGTTTGTTCCATGGTCATCG 57.086 42.857 12.58 0.00 0.00 3.84
753 758 5.366477 AGGAGAAAATTGTTTGTTCCATGGT 59.634 36.000 12.58 0.00 32.86 3.55
778 808 1.538276 GCGTGCAACAGATTATGTGC 58.462 50.000 0.00 0.00 43.00 4.57
779 809 1.739466 AGGCGTGCAACAGATTATGTG 59.261 47.619 0.00 0.00 43.00 3.21
784 814 2.888834 AAAAAGGCGTGCAACAGATT 57.111 40.000 0.00 0.00 35.74 2.40
800 830 4.627467 ACTTGCATGCGTTTGTTACAAAAA 59.373 33.333 12.37 2.15 0.00 1.94
822 852 2.987821 GTTGGAGACGAGTGCTAAAGAC 59.012 50.000 0.00 0.00 0.00 3.01
826 856 3.128349 GTTTGTTGGAGACGAGTGCTAA 58.872 45.455 0.00 0.00 0.00 3.09
869 899 2.100197 GGGATAGGGTTTGTTTCTGGC 58.900 52.381 0.00 0.00 0.00 4.85
897 927 2.303175 GTTGCTGGTTTGTTGGAGGTA 58.697 47.619 0.00 0.00 0.00 3.08
947 977 1.372748 GCCGAGATCGATCAGCTGG 60.373 63.158 26.47 20.67 43.02 4.85
948 978 1.372748 GGCCGAGATCGATCAGCTG 60.373 63.158 26.47 7.63 43.02 4.24
949 979 2.913765 CGGCCGAGATCGATCAGCT 61.914 63.158 24.07 6.77 43.02 4.24
950 980 2.429907 CGGCCGAGATCGATCAGC 60.430 66.667 24.07 23.12 43.02 4.26
970 1000 6.778069 AGTGTATGGACGCCTATATATATGCT 59.222 38.462 15.35 5.47 36.70 3.79
1017 1047 2.598565 CTGCTAGGGCTACTGGTATCA 58.401 52.381 0.00 0.00 39.59 2.15
1020 1050 0.759436 GGCTGCTAGGGCTACTGGTA 60.759 60.000 0.00 0.00 39.59 3.25
1358 1391 5.640357 AGATCGCATCTAGCTAGTACTACAC 59.360 44.000 20.10 8.82 42.61 2.90
1361 1394 6.035217 CGTAGATCGCATCTAGCTAGTACTA 58.965 44.000 20.10 1.89 42.20 1.82
1362 1395 4.865925 CGTAGATCGCATCTAGCTAGTACT 59.134 45.833 20.10 0.00 42.20 2.73
1363 1396 4.863689 TCGTAGATCGCATCTAGCTAGTAC 59.136 45.833 20.10 11.27 42.20 2.73
1364 1397 5.069501 TCGTAGATCGCATCTAGCTAGTA 57.930 43.478 20.10 7.88 42.20 1.82
1365 1398 3.927854 TCGTAGATCGCATCTAGCTAGT 58.072 45.455 20.10 5.41 42.20 2.57
1366 1399 3.242284 GCTCGTAGATCGCATCTAGCTAG 60.242 52.174 15.01 15.01 42.20 3.42
1367 1400 2.673862 GCTCGTAGATCGCATCTAGCTA 59.326 50.000 6.23 0.00 42.20 3.32
1368 1401 1.466950 GCTCGTAGATCGCATCTAGCT 59.533 52.381 0.00 0.00 42.20 3.32
1370 1403 3.930229 ACTAGCTCGTAGATCGCATCTAG 59.070 47.826 0.00 0.00 42.20 2.43
1388 1421 6.853720 TGAAGCAACACTAACTAGCTACTAG 58.146 40.000 0.08 0.08 39.72 2.57
1390 1423 5.723672 TGAAGCAACACTAACTAGCTACT 57.276 39.130 0.00 0.00 34.66 2.57
1391 1424 5.520649 GGATGAAGCAACACTAACTAGCTAC 59.479 44.000 0.00 0.00 34.66 3.58
1393 1426 4.020218 TGGATGAAGCAACACTAACTAGCT 60.020 41.667 0.00 0.00 37.08 3.32
1395 1428 6.037610 GGAATGGATGAAGCAACACTAACTAG 59.962 42.308 0.00 0.00 0.00 2.57
1396 1429 5.880332 GGAATGGATGAAGCAACACTAACTA 59.120 40.000 0.00 0.00 0.00 2.24
1397 1430 4.702131 GGAATGGATGAAGCAACACTAACT 59.298 41.667 0.00 0.00 0.00 2.24
1398 1431 4.458989 TGGAATGGATGAAGCAACACTAAC 59.541 41.667 0.00 0.00 0.00 2.34
1400 1433 4.299586 TGGAATGGATGAAGCAACACTA 57.700 40.909 0.00 0.00 0.00 2.74
1401 1434 3.159213 TGGAATGGATGAAGCAACACT 57.841 42.857 0.00 0.00 0.00 3.55
1402 1435 4.427312 GAATGGAATGGATGAAGCAACAC 58.573 43.478 0.00 0.00 0.00 3.32
1408 1450 4.897076 TGGAATGGAATGGAATGGATGAAG 59.103 41.667 0.00 0.00 0.00 3.02
1409 1451 4.881361 TGGAATGGAATGGAATGGATGAA 58.119 39.130 0.00 0.00 0.00 2.57
1465 2848 6.064060 CAGGTCCTGATCAATAAATTAGCCA 58.936 40.000 14.26 0.00 32.44 4.75
1468 2851 7.094463 GCATCCAGGTCCTGATCAATAAATTAG 60.094 40.741 21.23 0.00 32.44 1.73
1474 2857 3.321039 AGCATCCAGGTCCTGATCAATA 58.679 45.455 21.23 0.00 32.44 1.90
1479 2862 0.689080 ACGAGCATCCAGGTCCTGAT 60.689 55.000 21.23 9.01 41.71 2.90
1485 2870 2.680352 ACGGACGAGCATCCAGGT 60.680 61.111 0.00 0.00 38.87 4.00
1851 4254 8.084684 TCAGATCAGATTAATTATCACACCTCG 58.915 37.037 0.00 0.00 35.59 4.63
2048 4557 1.815003 CCCTTGAGGTTGATCTTGTGC 59.185 52.381 0.00 0.00 0.00 4.57
2289 4926 3.286404 CCATGGATTTGGTGCAGGA 57.714 52.632 5.56 0.00 30.96 3.86
2864 5537 6.741992 ATGAATGAATGAAACTAAGCGACA 57.258 33.333 0.00 0.00 0.00 4.35
2970 5643 4.245660 TCGAACTAATGTTGAGCTCAAGG 58.754 43.478 29.13 17.59 36.39 3.61
2971 5644 5.349817 ACATCGAACTAATGTTGAGCTCAAG 59.650 40.000 29.13 19.00 33.62 3.02
2972 5645 5.237815 ACATCGAACTAATGTTGAGCTCAA 58.762 37.500 25.16 25.16 33.62 3.02
3022 5697 4.590850 AAGTGGAAAAATCTCAACAGGC 57.409 40.909 0.00 0.00 0.00 4.85
3121 5813 1.864711 GCTTTGACAGACTTGTACGCA 59.135 47.619 0.00 0.00 37.76 5.24
3149 5841 9.598517 ACATTTTGAAACATGAAATTGTACTGT 57.401 25.926 0.00 0.00 0.00 3.55
3163 5865 9.829507 ATTGGATTGTTCTTACATTTTGAAACA 57.170 25.926 0.00 0.00 33.44 2.83
3169 5871 6.586082 GCACGATTGGATTGTTCTTACATTTT 59.414 34.615 0.00 0.00 33.44 1.82
3175 5877 4.323417 AGTGCACGATTGGATTGTTCTTA 58.677 39.130 12.01 0.00 0.00 2.10
3176 5878 3.149196 AGTGCACGATTGGATTGTTCTT 58.851 40.909 12.01 0.00 0.00 2.52
3178 5880 3.058293 TGAAGTGCACGATTGGATTGTTC 60.058 43.478 12.01 6.21 0.00 3.18
3182 5884 3.305335 GGTTTGAAGTGCACGATTGGATT 60.305 43.478 12.01 0.00 0.00 3.01
3192 5894 0.395586 AGTGCAGGGTTTGAAGTGCA 60.396 50.000 0.00 0.00 43.50 4.57
3193 5895 0.312102 GAGTGCAGGGTTTGAAGTGC 59.688 55.000 0.00 0.00 36.42 4.40
3194 5896 0.954452 GGAGTGCAGGGTTTGAAGTG 59.046 55.000 0.00 0.00 0.00 3.16
3205 5907 6.912591 CACTTAAAACAACTTTAGGAGTGCAG 59.087 38.462 0.00 0.00 39.00 4.41
3206 5908 6.600032 TCACTTAAAACAACTTTAGGAGTGCA 59.400 34.615 0.00 0.00 37.81 4.57
3208 5910 8.209917 ACTCACTTAAAACAACTTTAGGAGTG 57.790 34.615 0.00 0.00 38.55 3.51
3209 5911 9.895138 TTACTCACTTAAAACAACTTTAGGAGT 57.105 29.630 0.00 0.00 38.86 3.85
3246 6021 5.652452 GGGGTGATAACATTTTCTAGTTGCT 59.348 40.000 0.00 0.00 0.00 3.91
3342 6117 8.579850 TTGTATCTGTATTTTGCAAGGATTCT 57.420 30.769 0.00 0.00 0.00 2.40
3343 6118 9.076596 GTTTGTATCTGTATTTTGCAAGGATTC 57.923 33.333 0.00 0.00 0.00 2.52
3355 6130 8.015658 GCGAAAAGAAGTGTTTGTATCTGTATT 58.984 33.333 0.00 0.00 0.00 1.89
3360 6135 6.929606 ACTAGCGAAAAGAAGTGTTTGTATCT 59.070 34.615 0.00 0.00 0.00 1.98
3365 6140 4.272504 TGGACTAGCGAAAAGAAGTGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
3369 6144 6.147164 TGTTAATGGACTAGCGAAAAGAAGTG 59.853 38.462 0.00 0.00 0.00 3.16
3396 6171 4.835615 CCTCCTACACTTCCTAGCATACAT 59.164 45.833 0.00 0.00 0.00 2.29
3397 6172 4.215908 CCTCCTACACTTCCTAGCATACA 58.784 47.826 0.00 0.00 0.00 2.29
3398 6173 3.574826 CCCTCCTACACTTCCTAGCATAC 59.425 52.174 0.00 0.00 0.00 2.39
3399 6174 3.206866 ACCCTCCTACACTTCCTAGCATA 59.793 47.826 0.00 0.00 0.00 3.14
3400 6175 2.022918 ACCCTCCTACACTTCCTAGCAT 60.023 50.000 0.00 0.00 0.00 3.79
3401 6176 1.361543 ACCCTCCTACACTTCCTAGCA 59.638 52.381 0.00 0.00 0.00 3.49
3402 6177 1.757699 CACCCTCCTACACTTCCTAGC 59.242 57.143 0.00 0.00 0.00 3.42
3403 6178 3.292460 CTCACCCTCCTACACTTCCTAG 58.708 54.545 0.00 0.00 0.00 3.02
3404 6179 2.623502 GCTCACCCTCCTACACTTCCTA 60.624 54.545 0.00 0.00 0.00 2.94
3405 6180 1.897647 GCTCACCCTCCTACACTTCCT 60.898 57.143 0.00 0.00 0.00 3.36
3406 6181 0.537653 GCTCACCCTCCTACACTTCC 59.462 60.000 0.00 0.00 0.00 3.46
3407 6182 0.173708 CGCTCACCCTCCTACACTTC 59.826 60.000 0.00 0.00 0.00 3.01
3408 6183 1.889530 GCGCTCACCCTCCTACACTT 61.890 60.000 0.00 0.00 0.00 3.16
3418 6193 0.316841 TGGAAATTTTGCGCTCACCC 59.683 50.000 9.73 1.31 0.00 4.61
3453 6228 9.258826 CGTAGAATGAGAGTAAGTACTAGCTAA 57.741 37.037 0.00 0.00 36.50 3.09
3461 6236 6.997239 TCTTGCGTAGAATGAGAGTAAGTA 57.003 37.500 0.00 0.00 0.00 2.24
3476 6251 7.699566 ACTTTTTAAGTGACAAATCTTGCGTA 58.300 30.769 0.00 0.00 41.01 4.42
3510 6285 8.583810 TGTATACACTGTTTTTCTGTAGTGAC 57.416 34.615 0.08 0.00 42.28 3.67
3519 6294 8.624028 GCGTTACAAATGTATACACTGTTTTTC 58.376 33.333 21.39 11.95 30.65 2.29
3525 6300 7.428183 GGAATTGCGTTACAAATGTATACACTG 59.572 37.037 7.96 11.08 42.86 3.66
3547 6322 3.388350 GGATCGAAGGGAGTACTTGGAAT 59.612 47.826 0.00 0.00 38.42 3.01
3563 6338 7.857734 TTGAGCAAAAAGTAATATGGATCGA 57.142 32.000 0.00 0.00 0.00 3.59
3564 6339 7.967854 TGTTTGAGCAAAAAGTAATATGGATCG 59.032 33.333 0.00 0.00 31.33 3.69
3579 6354 7.946207 TCCATATTACTTGTTGTTTGAGCAAA 58.054 30.769 0.00 0.00 0.00 3.68
3590 6365 6.617371 ACTCCCTCTGATCCATATTACTTGTT 59.383 38.462 0.00 0.00 0.00 2.83
3679 6454 4.082463 GTGGAGTTCTCTGGTAGTGAAGAG 60.082 50.000 0.00 0.00 41.13 2.85
3683 6458 2.891580 GTGTGGAGTTCTCTGGTAGTGA 59.108 50.000 0.00 0.00 0.00 3.41
3689 6464 3.475566 TTCTTGTGTGGAGTTCTCTGG 57.524 47.619 0.00 0.00 0.00 3.86
3706 6483 8.142551 GGATATCGGCGTCCTAATTAATATTCT 58.857 37.037 6.85 0.00 0.00 2.40
3713 6490 3.194116 GGTGGATATCGGCGTCCTAATTA 59.806 47.826 14.96 0.00 35.49 1.40
3720 6497 0.874607 GTGTGGTGGATATCGGCGTC 60.875 60.000 6.85 0.00 0.00 5.19
3721 6498 1.143183 GTGTGGTGGATATCGGCGT 59.857 57.895 6.85 0.00 0.00 5.68
3722 6499 1.949133 CGTGTGGTGGATATCGGCG 60.949 63.158 0.00 0.00 0.00 6.46
3723 6500 1.143183 ACGTGTGGTGGATATCGGC 59.857 57.895 0.00 0.00 0.00 5.54
3724 6501 2.971997 CACGTGTGGTGGATATCGG 58.028 57.895 7.58 0.00 43.16 4.18
3735 6512 4.937696 TGCTTATTATTCCACACGTGTG 57.062 40.909 36.13 36.13 45.23 3.82
3736 6513 5.220586 CGAATGCTTATTATTCCACACGTGT 60.221 40.000 17.22 17.22 32.26 4.49
3737 6514 5.197549 CGAATGCTTATTATTCCACACGTG 58.802 41.667 15.48 15.48 32.26 4.49
3738 6515 4.260620 GCGAATGCTTATTATTCCACACGT 60.261 41.667 0.00 0.00 38.39 4.49
3739 6516 4.211389 GCGAATGCTTATTATTCCACACG 58.789 43.478 0.00 0.00 38.39 4.49
3740 6517 4.537015 GGCGAATGCTTATTATTCCACAC 58.463 43.478 0.00 0.00 42.25 3.82
3741 6518 3.568007 GGGCGAATGCTTATTATTCCACA 59.432 43.478 0.00 0.00 42.25 4.17
3742 6519 3.568007 TGGGCGAATGCTTATTATTCCAC 59.432 43.478 0.00 0.00 42.25 4.02
3743 6520 3.568007 GTGGGCGAATGCTTATTATTCCA 59.432 43.478 0.00 0.00 42.25 3.53
3744 6521 3.568007 TGTGGGCGAATGCTTATTATTCC 59.432 43.478 0.00 0.00 42.25 3.01
3745 6522 4.036262 TGTGTGGGCGAATGCTTATTATTC 59.964 41.667 0.00 0.00 42.25 1.75
3746 6523 3.951037 TGTGTGGGCGAATGCTTATTATT 59.049 39.130 0.00 0.00 42.25 1.40
3747 6524 3.315191 GTGTGTGGGCGAATGCTTATTAT 59.685 43.478 0.00 0.00 42.25 1.28
3748 6525 2.680841 GTGTGTGGGCGAATGCTTATTA 59.319 45.455 0.00 0.00 42.25 0.98
3749 6526 1.472480 GTGTGTGGGCGAATGCTTATT 59.528 47.619 0.00 0.00 42.25 1.40
3750 6527 1.094785 GTGTGTGGGCGAATGCTTAT 58.905 50.000 0.00 0.00 42.25 1.73
3751 6528 0.250510 TGTGTGTGGGCGAATGCTTA 60.251 50.000 0.00 0.00 42.25 3.09
3752 6529 0.895100 ATGTGTGTGGGCGAATGCTT 60.895 50.000 0.00 0.00 42.25 3.91
3753 6530 1.303561 ATGTGTGTGGGCGAATGCT 60.304 52.632 0.00 0.00 42.25 3.79
3754 6531 1.137404 GATGTGTGTGGGCGAATGC 59.863 57.895 0.00 0.00 41.71 3.56
3755 6532 1.298157 ACGATGTGTGTGGGCGAATG 61.298 55.000 0.00 0.00 0.00 2.67
3756 6533 1.003839 ACGATGTGTGTGGGCGAAT 60.004 52.632 0.00 0.00 0.00 3.34
3757 6534 1.958715 CACGATGTGTGTGGGCGAA 60.959 57.895 0.00 0.00 43.88 4.70
3758 6535 2.356913 CACGATGTGTGTGGGCGA 60.357 61.111 0.00 0.00 43.88 5.54
3768 6545 0.035317 ACTCATGCCACACACGATGT 59.965 50.000 0.00 0.00 44.81 3.06
3769 6546 1.929169 CTACTCATGCCACACACGATG 59.071 52.381 0.00 0.00 0.00 3.84
3770 6547 1.134699 CCTACTCATGCCACACACGAT 60.135 52.381 0.00 0.00 0.00 3.73
3771 6548 0.246360 CCTACTCATGCCACACACGA 59.754 55.000 0.00 0.00 0.00 4.35
3772 6549 0.740868 CCCTACTCATGCCACACACG 60.741 60.000 0.00 0.00 0.00 4.49
3773 6550 0.392998 CCCCTACTCATGCCACACAC 60.393 60.000 0.00 0.00 0.00 3.82
3774 6551 1.561769 CCCCCTACTCATGCCACACA 61.562 60.000 0.00 0.00 0.00 3.72
3775 6552 1.224592 CCCCCTACTCATGCCACAC 59.775 63.158 0.00 0.00 0.00 3.82
3776 6553 2.679342 GCCCCCTACTCATGCCACA 61.679 63.158 0.00 0.00 0.00 4.17
3777 6554 2.193248 GCCCCCTACTCATGCCAC 59.807 66.667 0.00 0.00 0.00 5.01
3778 6555 2.286045 TGCCCCCTACTCATGCCA 60.286 61.111 0.00 0.00 0.00 4.92
3779 6556 2.512896 CTGCCCCCTACTCATGCC 59.487 66.667 0.00 0.00 0.00 4.40
3780 6557 2.203266 GCTGCCCCCTACTCATGC 60.203 66.667 0.00 0.00 0.00 4.06
3781 6558 2.512896 GGCTGCCCCCTACTCATG 59.487 66.667 7.66 0.00 0.00 3.07
3804 6581 4.947147 TTCGCCCACACACAGCCC 62.947 66.667 0.00 0.00 0.00 5.19
3805 6582 3.660111 GTTCGCCCACACACAGCC 61.660 66.667 0.00 0.00 0.00 4.85
3806 6583 2.896801 CTGTTCGCCCACACACAGC 61.897 63.158 0.00 0.00 30.79 4.40
3807 6584 0.249699 TACTGTTCGCCCACACACAG 60.250 55.000 0.00 0.00 42.08 3.66
3808 6585 0.249699 CTACTGTTCGCCCACACACA 60.250 55.000 0.00 0.00 0.00 3.72
3809 6586 0.032952 TCTACTGTTCGCCCACACAC 59.967 55.000 0.00 0.00 0.00 3.82
3810 6587 0.753867 TTCTACTGTTCGCCCACACA 59.246 50.000 0.00 0.00 0.00 3.72
3811 6588 2.094762 ATTCTACTGTTCGCCCACAC 57.905 50.000 0.00 0.00 0.00 3.82
3812 6589 2.422597 CAATTCTACTGTTCGCCCACA 58.577 47.619 0.00 0.00 0.00 4.17
3813 6590 1.130561 GCAATTCTACTGTTCGCCCAC 59.869 52.381 0.00 0.00 0.00 4.61
3814 6591 1.448985 GCAATTCTACTGTTCGCCCA 58.551 50.000 0.00 0.00 0.00 5.36
3815 6592 0.733150 GGCAATTCTACTGTTCGCCC 59.267 55.000 0.00 0.00 31.76 6.13
3816 6593 0.733150 GGGCAATTCTACTGTTCGCC 59.267 55.000 0.00 0.00 37.33 5.54
3817 6594 1.130561 GTGGGCAATTCTACTGTTCGC 59.869 52.381 0.00 0.00 0.00 4.70
3818 6595 2.159627 GTGTGGGCAATTCTACTGTTCG 59.840 50.000 0.00 0.00 0.00 3.95
3819 6596 2.159627 CGTGTGGGCAATTCTACTGTTC 59.840 50.000 0.00 0.00 0.00 3.18
3820 6597 2.151202 CGTGTGGGCAATTCTACTGTT 58.849 47.619 0.00 0.00 0.00 3.16
3821 6598 1.071699 ACGTGTGGGCAATTCTACTGT 59.928 47.619 0.00 0.00 0.00 3.55
3822 6599 1.464608 CACGTGTGGGCAATTCTACTG 59.535 52.381 7.58 0.00 0.00 2.74
3823 6600 1.071699 ACACGTGTGGGCAATTCTACT 59.928 47.619 22.71 0.00 34.19 2.57
3824 6601 1.196808 CACACGTGTGGGCAATTCTAC 59.803 52.381 35.65 0.00 42.10 2.59
3825 6602 1.518325 CACACGTGTGGGCAATTCTA 58.482 50.000 35.65 0.00 42.10 2.10
3826 6603 2.330254 CACACGTGTGGGCAATTCT 58.670 52.632 35.65 1.12 42.10 2.40
3827 6604 4.942090 CACACGTGTGGGCAATTC 57.058 55.556 35.65 0.00 42.10 2.17
3841 6618 0.692476 ATGAAGTAGCTGTGCCCACA 59.308 50.000 0.00 0.71 39.32 4.17
3842 6619 1.089920 CATGAAGTAGCTGTGCCCAC 58.910 55.000 0.00 0.00 0.00 4.61
3843 6620 0.677731 GCATGAAGTAGCTGTGCCCA 60.678 55.000 0.00 0.00 0.00 5.36
3844 6621 2.101700 GCATGAAGTAGCTGTGCCC 58.898 57.895 0.00 0.00 0.00 5.36
3846 6623 0.449388 GTGGCATGAAGTAGCTGTGC 59.551 55.000 0.00 0.00 35.17 4.57
3847 6624 1.466167 GTGTGGCATGAAGTAGCTGTG 59.534 52.381 0.00 0.00 0.00 3.66
3848 6625 1.072173 TGTGTGGCATGAAGTAGCTGT 59.928 47.619 0.00 0.00 0.00 4.40
3849 6626 1.466167 GTGTGTGGCATGAAGTAGCTG 59.534 52.381 0.00 0.00 0.00 4.24
3850 6627 1.611673 GGTGTGTGGCATGAAGTAGCT 60.612 52.381 0.00 0.00 0.00 3.32
3851 6628 0.804989 GGTGTGTGGCATGAAGTAGC 59.195 55.000 0.00 0.00 0.00 3.58
3852 6629 1.271325 TGGGTGTGTGGCATGAAGTAG 60.271 52.381 0.00 0.00 0.00 2.57
3853 6630 0.767998 TGGGTGTGTGGCATGAAGTA 59.232 50.000 0.00 0.00 0.00 2.24
3854 6631 0.106268 TTGGGTGTGTGGCATGAAGT 60.106 50.000 0.00 0.00 0.00 3.01
3855 6632 2.730990 TTGGGTGTGTGGCATGAAG 58.269 52.632 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.