Multiple sequence alignment - TraesCS7D01G495300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G495300 chr7D 100.000 2525 0 0 1 2525 602303270 602300746 0.000000e+00 4663.0
1 TraesCS7D01G495300 chr7D 78.378 111 15 5 2412 2516 614516792 614516899 2.100000e-06 63.9
2 TraesCS7D01G495300 chr7A 93.598 1640 65 14 170 1775 694054754 694053121 0.000000e+00 2410.0
3 TraesCS7D01G495300 chr7A 90.323 155 15 0 1 155 694055112 694054958 1.180000e-48 204.0
4 TraesCS7D01G495300 chr7A 86.842 152 15 3 167 314 29860052 29860202 5.590000e-37 165.0
5 TraesCS7D01G495300 chr7A 100.000 30 0 0 713 742 694054074 694054045 3.510000e-04 56.5
6 TraesCS7D01G495300 chrUn 90.046 1085 69 17 752 1817 87125463 87124399 0.000000e+00 1369.0
7 TraesCS7D01G495300 chrUn 92.479 585 37 6 170 750 87126708 87126127 0.000000e+00 830.0
8 TraesCS7D01G495300 chrUn 86.761 355 43 1 2159 2509 87114123 87113769 2.350000e-105 392.0
9 TraesCS7D01G495300 chrUn 93.506 154 10 0 1 154 87127066 87126913 1.950000e-56 230.0
10 TraesCS7D01G495300 chr6D 77.709 323 33 13 167 479 76504454 76504747 7.230000e-36 161.0
11 TraesCS7D01G495300 chr6D 86.486 148 16 2 167 311 76501490 76501636 2.600000e-35 159.0
12 TraesCS7D01G495300 chr5A 86.905 84 10 1 1790 1873 496748279 496748197 2.670000e-15 93.5
13 TraesCS7D01G495300 chr5A 83.951 81 11 2 2437 2516 26583542 26583463 2.690000e-10 76.8
14 TraesCS7D01G495300 chr1A 86.420 81 9 2 2437 2516 140963677 140963756 1.240000e-13 87.9
15 TraesCS7D01G495300 chr1A 88.525 61 7 0 2439 2499 20906775 20906835 9.690000e-10 75.0
16 TraesCS7D01G495300 chr4A 81.818 88 16 0 2412 2499 11737405 11737492 9.690000e-10 75.0
17 TraesCS7D01G495300 chr1B 94.286 35 2 0 873 907 17611625 17611659 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G495300 chr7D 602300746 602303270 2524 True 4663.000000 4663 100.000000 1 2525 1 chr7D.!!$R1 2524
1 TraesCS7D01G495300 chr7A 694053121 694055112 1991 True 890.166667 2410 94.640333 1 1775 3 chr7A.!!$R1 1774
2 TraesCS7D01G495300 chrUn 87124399 87127066 2667 True 809.666667 1369 92.010333 1 1817 3 chrUn.!!$R2 1816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 416 0.036732 TTCTCGCTTCCATGGCTTGT 59.963 50.0 6.96 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2888 0.033601 TGAAGGGCAGGTGTTGTGTT 60.034 50.0 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.449018 GTGTTCTTCTCCTCCATAGCTCA 59.551 47.826 0.00 0.00 0.00 4.26
57 58 1.153706 ACGGAACTGGGCGATAACG 60.154 57.895 0.00 0.00 42.93 3.18
89 90 4.882396 TGGTGACCCCCACGACCA 62.882 66.667 0.00 0.00 46.62 4.02
147 148 1.844289 TTAGGCGGTCAACCCCACT 60.844 57.895 8.74 1.29 0.00 4.00
155 156 4.028490 CAACCCCACTGCCGGCTA 62.028 66.667 29.70 13.31 0.00 3.93
156 157 3.253838 AACCCCACTGCCGGCTAA 61.254 61.111 29.70 7.24 0.00 3.09
226 416 0.036732 TTCTCGCTTCCATGGCTTGT 59.963 50.000 6.96 0.00 0.00 3.16
287 478 1.365999 GGGCGTTGGGTTTGGAAAG 59.634 57.895 0.00 0.00 0.00 2.62
517 709 2.034104 ACGAGCGACTGACCTATGTA 57.966 50.000 0.00 0.00 0.00 2.29
549 741 7.799447 CGTTTAGGAGTAGAGATACGATTGAAG 59.201 40.741 0.00 0.00 0.00 3.02
609 806 9.875675 GTCTCTGACTAATTAATGAATTGCATC 57.124 33.333 0.00 0.00 35.96 3.91
681 879 6.547510 AGATGTAGGTAATGGCTTGATTTTCC 59.452 38.462 0.00 0.00 0.00 3.13
747 945 4.142160 TGACTGAGTACCGATGAAATCTGG 60.142 45.833 0.00 0.00 42.58 3.86
793 1653 6.467047 CGATGAACTCTGTTTGCATTAATGAC 59.533 38.462 19.73 9.01 0.00 3.06
794 1654 6.012658 TGAACTCTGTTTGCATTAATGACC 57.987 37.500 19.73 2.94 0.00 4.02
817 1677 4.232221 GAGTACCGACGAAATCTGTTTGA 58.768 43.478 0.00 0.00 0.00 2.69
834 1694 8.099364 TCTGTTTGAATTAATGACTGAGAACC 57.901 34.615 0.00 0.00 0.00 3.62
862 1722 8.196802 TGAAATCTGTTCGTATTAATGACTGG 57.803 34.615 0.00 0.00 0.00 4.00
866 1726 7.172868 TCTGTTCGTATTAATGACTGGGTAA 57.827 36.000 0.00 0.00 0.00 2.85
1011 1875 3.052745 CTGCGTATTGATGTATGCGAGT 58.947 45.455 0.00 0.00 39.01 4.18
1040 1907 1.085893 TACACGATGTGCATGCTTGG 58.914 50.000 20.33 7.70 36.98 3.61
1097 1968 1.599542 GCACACCGGCTGATATTTCTC 59.400 52.381 0.00 0.00 0.00 2.87
1098 1969 2.743183 GCACACCGGCTGATATTTCTCT 60.743 50.000 0.00 0.00 0.00 3.10
1099 1970 3.535561 CACACCGGCTGATATTTCTCTT 58.464 45.455 0.00 0.00 0.00 2.85
1100 1971 3.941483 CACACCGGCTGATATTTCTCTTT 59.059 43.478 0.00 0.00 0.00 2.52
1440 2317 3.192844 CAGCTTTGGATGAATGCAAGACT 59.807 43.478 0.00 0.00 39.29 3.24
1482 2359 2.783135 TCAGAAGACATTCAAGTGGCC 58.217 47.619 0.00 0.00 37.94 5.36
1661 2562 8.443898 TGTATAATATCGTTCATACAGCGAAC 57.556 34.615 0.00 0.00 39.50 3.95
1671 2572 4.627058 TCATACAGCGAACAAAAGAGACA 58.373 39.130 0.00 0.00 0.00 3.41
1851 2753 2.203470 TTTCGTTTATGGTGGGACCC 57.797 50.000 2.45 2.45 37.50 4.46
1852 2754 0.036199 TTCGTTTATGGTGGGACCCG 60.036 55.000 5.91 0.00 37.50 5.28
1853 2755 1.450669 CGTTTATGGTGGGACCCGG 60.451 63.158 5.91 0.00 37.50 5.73
1854 2756 1.751544 GTTTATGGTGGGACCCGGC 60.752 63.158 5.91 0.71 37.50 6.13
1855 2757 1.926489 TTTATGGTGGGACCCGGCT 60.926 57.895 5.91 0.00 37.50 5.52
1856 2758 2.204865 TTTATGGTGGGACCCGGCTG 62.205 60.000 5.91 0.00 37.50 4.85
1857 2759 3.627332 TATGGTGGGACCCGGCTGA 62.627 63.158 5.91 0.00 37.50 4.26
1858 2760 2.907482 TATGGTGGGACCCGGCTGAT 62.907 60.000 5.91 1.43 37.50 2.90
1859 2761 3.728373 GGTGGGACCCGGCTGATT 61.728 66.667 5.91 0.00 30.04 2.57
1860 2762 2.355115 GTGGGACCCGGCTGATTT 59.645 61.111 5.91 0.00 0.00 2.17
1861 2763 1.304134 GTGGGACCCGGCTGATTTT 60.304 57.895 5.91 0.00 0.00 1.82
1862 2764 0.898326 GTGGGACCCGGCTGATTTTT 60.898 55.000 5.91 0.00 0.00 1.94
1878 2780 2.649531 TTTTTGTCCGTCATGGGTCT 57.350 45.000 0.00 0.00 38.76 3.85
1879 2781 2.649531 TTTTGTCCGTCATGGGTCTT 57.350 45.000 0.00 0.00 38.76 3.01
1880 2782 2.649531 TTTGTCCGTCATGGGTCTTT 57.350 45.000 0.00 0.00 38.76 2.52
1881 2783 1.890876 TTGTCCGTCATGGGTCTTTG 58.109 50.000 0.00 0.00 38.76 2.77
1882 2784 0.605319 TGTCCGTCATGGGTCTTTGC 60.605 55.000 0.00 0.00 38.76 3.68
1883 2785 1.002624 TCCGTCATGGGTCTTTGCC 60.003 57.895 0.00 0.00 38.76 4.52
1884 2786 1.002134 CCGTCATGGGTCTTTGCCT 60.002 57.895 0.00 0.00 0.00 4.75
1885 2787 0.609131 CCGTCATGGGTCTTTGCCTT 60.609 55.000 0.00 0.00 0.00 4.35
1886 2788 1.247567 CGTCATGGGTCTTTGCCTTT 58.752 50.000 0.00 0.00 0.00 3.11
1887 2789 1.613437 CGTCATGGGTCTTTGCCTTTT 59.387 47.619 0.00 0.00 0.00 2.27
1888 2790 2.035832 CGTCATGGGTCTTTGCCTTTTT 59.964 45.455 0.00 0.00 0.00 1.94
1915 2817 9.878667 TTTATCGTCAGGTAAAAGACATATTGA 57.121 29.630 0.00 0.00 34.48 2.57
1917 2819 7.770801 TCGTCAGGTAAAAGACATATTGATG 57.229 36.000 0.00 0.00 39.16 3.07
1918 2820 6.761242 TCGTCAGGTAAAAGACATATTGATGG 59.239 38.462 0.00 0.00 37.39 3.51
1919 2821 6.017934 CGTCAGGTAAAAGACATATTGATGGG 60.018 42.308 0.00 0.00 37.39 4.00
1920 2822 5.827797 TCAGGTAAAAGACATATTGATGGGC 59.172 40.000 0.00 0.00 37.39 5.36
1921 2823 5.010012 CAGGTAAAAGACATATTGATGGGCC 59.990 44.000 0.00 0.00 37.39 5.80
1922 2824 5.103515 AGGTAAAAGACATATTGATGGGCCT 60.104 40.000 4.53 0.00 37.39 5.19
1923 2825 5.010012 GGTAAAAGACATATTGATGGGCCTG 59.990 44.000 4.53 0.00 37.39 4.85
1924 2826 2.283145 AGACATATTGATGGGCCTGC 57.717 50.000 4.53 0.00 37.39 4.85
1925 2827 1.779092 AGACATATTGATGGGCCTGCT 59.221 47.619 4.53 0.00 37.39 4.24
1926 2828 2.157738 GACATATTGATGGGCCTGCTC 58.842 52.381 4.53 0.00 37.39 4.26
1927 2829 1.162698 CATATTGATGGGCCTGCTCG 58.837 55.000 4.53 0.00 0.00 5.03
1928 2830 1.059098 ATATTGATGGGCCTGCTCGA 58.941 50.000 4.53 0.00 0.00 4.04
1929 2831 0.836606 TATTGATGGGCCTGCTCGAA 59.163 50.000 4.53 0.00 0.00 3.71
1930 2832 0.034186 ATTGATGGGCCTGCTCGAAA 60.034 50.000 4.53 0.00 0.00 3.46
1931 2833 0.034186 TTGATGGGCCTGCTCGAAAT 60.034 50.000 4.53 0.00 0.00 2.17
1932 2834 0.836606 TGATGGGCCTGCTCGAAATA 59.163 50.000 4.53 0.00 0.00 1.40
1933 2835 1.230324 GATGGGCCTGCTCGAAATAC 58.770 55.000 4.53 0.00 0.00 1.89
1934 2836 0.179018 ATGGGCCTGCTCGAAATACC 60.179 55.000 4.53 0.00 0.00 2.73
1935 2837 1.526225 GGGCCTGCTCGAAATACCC 60.526 63.158 0.84 0.00 0.00 3.69
1936 2838 1.887707 GGCCTGCTCGAAATACCCG 60.888 63.158 0.00 0.00 0.00 5.28
1937 2839 1.153429 GCCTGCTCGAAATACCCGT 60.153 57.895 0.00 0.00 0.00 5.28
1938 2840 0.103572 GCCTGCTCGAAATACCCGTA 59.896 55.000 0.00 0.00 0.00 4.02
1939 2841 1.849097 CCTGCTCGAAATACCCGTAC 58.151 55.000 0.00 0.00 0.00 3.67
1940 2842 1.135527 CCTGCTCGAAATACCCGTACA 59.864 52.381 0.00 0.00 0.00 2.90
1941 2843 2.190981 CTGCTCGAAATACCCGTACAC 58.809 52.381 0.00 0.00 0.00 2.90
1942 2844 1.194495 GCTCGAAATACCCGTACACG 58.806 55.000 0.00 0.00 39.44 4.49
1952 2854 4.902308 CGTACACGGCTCCATTGA 57.098 55.556 0.00 0.00 35.37 2.57
1953 2855 2.369870 CGTACACGGCTCCATTGAC 58.630 57.895 0.00 0.00 35.37 3.18
1954 2856 1.082117 CGTACACGGCTCCATTGACC 61.082 60.000 0.00 0.00 35.37 4.02
1955 2857 0.036765 GTACACGGCTCCATTGACCA 60.037 55.000 0.00 0.00 0.00 4.02
1956 2858 0.249120 TACACGGCTCCATTGACCAG 59.751 55.000 0.00 0.00 0.00 4.00
1957 2859 2.045926 ACGGCTCCATTGACCAGC 60.046 61.111 0.00 0.00 0.00 4.85
1958 2860 2.270205 CGGCTCCATTGACCAGCT 59.730 61.111 0.00 0.00 33.38 4.24
1959 2861 1.264749 ACGGCTCCATTGACCAGCTA 61.265 55.000 0.00 0.00 33.38 3.32
1960 2862 0.107703 CGGCTCCATTGACCAGCTAA 60.108 55.000 0.00 0.00 33.38 3.09
1961 2863 1.678728 CGGCTCCATTGACCAGCTAAA 60.679 52.381 0.00 0.00 33.38 1.85
1962 2864 2.446435 GGCTCCATTGACCAGCTAAAA 58.554 47.619 0.00 0.00 33.38 1.52
1963 2865 2.825532 GGCTCCATTGACCAGCTAAAAA 59.174 45.455 0.00 0.00 33.38 1.94
1985 2887 5.998454 AATTGGTTCTATGCTGAGATTCG 57.002 39.130 0.00 0.00 0.00 3.34
1986 2888 4.736126 TTGGTTCTATGCTGAGATTCGA 57.264 40.909 0.00 0.00 0.00 3.71
1987 2889 4.736126 TGGTTCTATGCTGAGATTCGAA 57.264 40.909 0.00 0.00 0.00 3.71
1988 2890 4.433615 TGGTTCTATGCTGAGATTCGAAC 58.566 43.478 0.00 0.00 0.00 3.95
1989 2891 4.081697 TGGTTCTATGCTGAGATTCGAACA 60.082 41.667 0.00 0.00 33.02 3.18
1990 2892 4.268884 GGTTCTATGCTGAGATTCGAACAC 59.731 45.833 0.00 0.00 33.02 3.32
1991 2893 4.718940 TCTATGCTGAGATTCGAACACA 57.281 40.909 0.00 0.08 0.00 3.72
1992 2894 5.072040 TCTATGCTGAGATTCGAACACAA 57.928 39.130 0.00 0.00 0.00 3.33
1993 2895 4.864806 TCTATGCTGAGATTCGAACACAAC 59.135 41.667 0.00 0.00 0.00 3.32
1994 2896 2.832563 TGCTGAGATTCGAACACAACA 58.167 42.857 0.00 0.10 0.00 3.33
1995 2897 2.543848 TGCTGAGATTCGAACACAACAC 59.456 45.455 0.00 0.00 0.00 3.32
1996 2898 2.096218 GCTGAGATTCGAACACAACACC 60.096 50.000 0.00 0.00 0.00 4.16
1997 2899 3.393800 CTGAGATTCGAACACAACACCT 58.606 45.455 0.00 0.00 0.00 4.00
1998 2900 3.130633 TGAGATTCGAACACAACACCTG 58.869 45.455 0.00 0.00 0.00 4.00
1999 2901 1.873591 AGATTCGAACACAACACCTGC 59.126 47.619 0.00 0.00 0.00 4.85
2000 2902 0.951558 ATTCGAACACAACACCTGCC 59.048 50.000 0.00 0.00 0.00 4.85
2001 2903 1.098712 TTCGAACACAACACCTGCCC 61.099 55.000 0.00 0.00 0.00 5.36
2002 2904 1.525995 CGAACACAACACCTGCCCT 60.526 57.895 0.00 0.00 0.00 5.19
2003 2905 1.101049 CGAACACAACACCTGCCCTT 61.101 55.000 0.00 0.00 0.00 3.95
2004 2906 0.668535 GAACACAACACCTGCCCTTC 59.331 55.000 0.00 0.00 0.00 3.46
2005 2907 0.033601 AACACAACACCTGCCCTTCA 60.034 50.000 0.00 0.00 0.00 3.02
2006 2908 0.751643 ACACAACACCTGCCCTTCAC 60.752 55.000 0.00 0.00 0.00 3.18
2007 2909 0.466189 CACAACACCTGCCCTTCACT 60.466 55.000 0.00 0.00 0.00 3.41
2008 2910 1.136828 ACAACACCTGCCCTTCACTA 58.863 50.000 0.00 0.00 0.00 2.74
2009 2911 1.202770 ACAACACCTGCCCTTCACTAC 60.203 52.381 0.00 0.00 0.00 2.73
2010 2912 1.136828 AACACCTGCCCTTCACTACA 58.863 50.000 0.00 0.00 0.00 2.74
2011 2913 1.362224 ACACCTGCCCTTCACTACAT 58.638 50.000 0.00 0.00 0.00 2.29
2012 2914 2.546899 ACACCTGCCCTTCACTACATA 58.453 47.619 0.00 0.00 0.00 2.29
2013 2915 2.910319 ACACCTGCCCTTCACTACATAA 59.090 45.455 0.00 0.00 0.00 1.90
2014 2916 3.523564 ACACCTGCCCTTCACTACATAAT 59.476 43.478 0.00 0.00 0.00 1.28
2015 2917 3.879295 CACCTGCCCTTCACTACATAATG 59.121 47.826 0.00 0.00 0.00 1.90
2016 2918 3.523564 ACCTGCCCTTCACTACATAATGT 59.476 43.478 0.00 0.00 0.00 2.71
2017 2919 4.018415 ACCTGCCCTTCACTACATAATGTT 60.018 41.667 0.00 0.00 0.00 2.71
2018 2920 4.576463 CCTGCCCTTCACTACATAATGTTC 59.424 45.833 0.00 0.00 0.00 3.18
2019 2921 5.431765 CTGCCCTTCACTACATAATGTTCT 58.568 41.667 0.00 0.00 0.00 3.01
2020 2922 6.408092 CCTGCCCTTCACTACATAATGTTCTA 60.408 42.308 0.00 0.00 0.00 2.10
2021 2923 6.582636 TGCCCTTCACTACATAATGTTCTAG 58.417 40.000 0.00 0.00 0.00 2.43
2022 2924 5.467063 GCCCTTCACTACATAATGTTCTAGC 59.533 44.000 0.00 0.00 0.00 3.42
2023 2925 5.992217 CCCTTCACTACATAATGTTCTAGCC 59.008 44.000 0.00 0.00 0.00 3.93
2024 2926 6.408092 CCCTTCACTACATAATGTTCTAGCCA 60.408 42.308 0.00 0.00 0.00 4.75
2025 2927 6.480320 CCTTCACTACATAATGTTCTAGCCAC 59.520 42.308 0.00 0.00 0.00 5.01
2026 2928 6.791867 TCACTACATAATGTTCTAGCCACT 57.208 37.500 0.00 0.00 0.00 4.00
2027 2929 7.891498 TCACTACATAATGTTCTAGCCACTA 57.109 36.000 0.00 0.00 0.00 2.74
2028 2930 8.301252 TCACTACATAATGTTCTAGCCACTAA 57.699 34.615 0.00 0.00 0.00 2.24
2029 2931 8.414003 TCACTACATAATGTTCTAGCCACTAAG 58.586 37.037 0.00 0.00 0.00 2.18
2030 2932 7.169982 CACTACATAATGTTCTAGCCACTAAGC 59.830 40.741 0.00 0.00 0.00 3.09
2032 2934 7.361457 ACATAATGTTCTAGCCACTAAGCTA 57.639 36.000 0.00 0.00 42.70 3.32
2033 2935 7.967908 ACATAATGTTCTAGCCACTAAGCTAT 58.032 34.615 0.00 0.00 44.14 2.97
2034 2936 9.090103 ACATAATGTTCTAGCCACTAAGCTATA 57.910 33.333 0.00 0.00 44.14 1.31
2035 2937 9.579768 CATAATGTTCTAGCCACTAAGCTATAG 57.420 37.037 0.00 0.00 44.14 1.31
2036 2938 5.455056 TGTTCTAGCCACTAAGCTATAGC 57.545 43.478 17.33 17.33 44.14 2.97
2052 2954 6.216750 GCTATAGCTTCGTGGAATAACTTG 57.783 41.667 17.75 0.00 38.21 3.16
2053 2955 5.983720 GCTATAGCTTCGTGGAATAACTTGA 59.016 40.000 17.75 0.00 38.21 3.02
2054 2956 6.647067 GCTATAGCTTCGTGGAATAACTTGAT 59.353 38.462 17.75 0.00 38.21 2.57
2055 2957 7.148722 GCTATAGCTTCGTGGAATAACTTGATC 60.149 40.741 17.75 0.00 38.21 2.92
2056 2958 4.192317 AGCTTCGTGGAATAACTTGATCC 58.808 43.478 0.00 0.00 0.00 3.36
2057 2959 3.938963 GCTTCGTGGAATAACTTGATCCA 59.061 43.478 0.00 0.00 40.84 3.41
2058 2960 4.576463 GCTTCGTGGAATAACTTGATCCAT 59.424 41.667 0.00 0.00 44.55 3.41
2059 2961 5.758296 GCTTCGTGGAATAACTTGATCCATA 59.242 40.000 0.00 0.00 44.55 2.74
2060 2962 6.292919 GCTTCGTGGAATAACTTGATCCATAC 60.293 42.308 0.00 0.00 44.55 2.39
2061 2963 6.479972 TCGTGGAATAACTTGATCCATACT 57.520 37.500 0.00 0.00 44.55 2.12
2062 2964 6.884832 TCGTGGAATAACTTGATCCATACTT 58.115 36.000 0.00 0.00 44.55 2.24
2063 2965 6.761242 TCGTGGAATAACTTGATCCATACTTG 59.239 38.462 0.00 0.00 44.55 3.16
2064 2966 6.511767 CGTGGAATAACTTGATCCATACTTGC 60.512 42.308 0.00 0.00 44.55 4.01
2065 2967 5.527214 TGGAATAACTTGATCCATACTTGCG 59.473 40.000 0.00 0.00 38.30 4.85
2066 2968 5.758296 GGAATAACTTGATCCATACTTGCGA 59.242 40.000 0.00 0.00 33.30 5.10
2067 2969 6.428159 GGAATAACTTGATCCATACTTGCGAT 59.572 38.462 0.00 0.00 33.30 4.58
2068 2970 7.602644 GGAATAACTTGATCCATACTTGCGATA 59.397 37.037 0.00 0.00 33.30 2.92
2069 2971 9.155975 GAATAACTTGATCCATACTTGCGATAT 57.844 33.333 0.00 0.00 0.00 1.63
2072 2974 8.902540 AACTTGATCCATACTTGCGATATAAA 57.097 30.769 0.00 0.00 0.00 1.40
2073 2975 8.902540 ACTTGATCCATACTTGCGATATAAAA 57.097 30.769 0.00 0.00 0.00 1.52
2074 2976 9.337396 ACTTGATCCATACTTGCGATATAAAAA 57.663 29.630 0.00 0.00 0.00 1.94
2101 3003 9.787532 AAATCAAAATAACTTGATCCATACGTG 57.212 29.630 0.00 0.00 43.65 4.49
2102 3004 6.781138 TCAAAATAACTTGATCCATACGTGC 58.219 36.000 0.00 0.00 30.31 5.34
2103 3005 6.372937 TCAAAATAACTTGATCCATACGTGCA 59.627 34.615 0.00 0.00 30.31 4.57
2104 3006 5.734855 AATAACTTGATCCATACGTGCAC 57.265 39.130 6.82 6.82 0.00 4.57
2105 3007 2.760634 ACTTGATCCATACGTGCACA 57.239 45.000 18.64 0.00 0.00 4.57
2106 3008 2.621338 ACTTGATCCATACGTGCACAG 58.379 47.619 18.64 12.16 0.00 3.66
2107 3009 1.328680 CTTGATCCATACGTGCACAGC 59.671 52.381 18.64 0.00 0.00 4.40
2108 3010 0.536724 TGATCCATACGTGCACAGCT 59.463 50.000 18.64 0.41 0.00 4.24
2109 3011 1.754226 TGATCCATACGTGCACAGCTA 59.246 47.619 18.64 2.93 0.00 3.32
2110 3012 2.223805 TGATCCATACGTGCACAGCTAG 60.224 50.000 18.64 2.02 0.00 3.42
2111 3013 0.179111 TCCATACGTGCACAGCTAGC 60.179 55.000 18.64 6.62 0.00 3.42
2112 3014 0.460109 CCATACGTGCACAGCTAGCA 60.460 55.000 18.83 8.79 40.19 3.49
2119 3021 1.679139 TGCACAGCTAGCACAAAACT 58.321 45.000 18.83 0.00 37.02 2.66
2120 3022 1.603802 TGCACAGCTAGCACAAAACTC 59.396 47.619 18.83 0.00 37.02 3.01
2121 3023 1.876156 GCACAGCTAGCACAAAACTCT 59.124 47.619 18.83 0.00 0.00 3.24
2122 3024 2.096019 GCACAGCTAGCACAAAACTCTC 60.096 50.000 18.83 0.00 0.00 3.20
2123 3025 2.481952 CACAGCTAGCACAAAACTCTCC 59.518 50.000 18.83 0.00 0.00 3.71
2124 3026 2.104792 ACAGCTAGCACAAAACTCTCCA 59.895 45.455 18.83 0.00 0.00 3.86
2125 3027 3.244700 ACAGCTAGCACAAAACTCTCCAT 60.245 43.478 18.83 0.00 0.00 3.41
2126 3028 4.020218 ACAGCTAGCACAAAACTCTCCATA 60.020 41.667 18.83 0.00 0.00 2.74
2127 3029 4.937620 CAGCTAGCACAAAACTCTCCATAA 59.062 41.667 18.83 0.00 0.00 1.90
2128 3030 5.412594 CAGCTAGCACAAAACTCTCCATAAA 59.587 40.000 18.83 0.00 0.00 1.40
2129 3031 5.412904 AGCTAGCACAAAACTCTCCATAAAC 59.587 40.000 18.83 0.00 0.00 2.01
2130 3032 4.749245 AGCACAAAACTCTCCATAAACG 57.251 40.909 0.00 0.00 0.00 3.60
2131 3033 4.385825 AGCACAAAACTCTCCATAAACGA 58.614 39.130 0.00 0.00 0.00 3.85
2132 3034 5.003804 AGCACAAAACTCTCCATAAACGAT 58.996 37.500 0.00 0.00 0.00 3.73
2133 3035 5.473504 AGCACAAAACTCTCCATAAACGATT 59.526 36.000 0.00 0.00 0.00 3.34
2134 3036 5.795441 GCACAAAACTCTCCATAAACGATTC 59.205 40.000 0.00 0.00 0.00 2.52
2135 3037 6.314784 CACAAAACTCTCCATAAACGATTCC 58.685 40.000 0.00 0.00 0.00 3.01
2136 3038 5.414765 ACAAAACTCTCCATAAACGATTCCC 59.585 40.000 0.00 0.00 0.00 3.97
2137 3039 5.437191 AAACTCTCCATAAACGATTCCCT 57.563 39.130 0.00 0.00 0.00 4.20
2138 3040 5.437191 AACTCTCCATAAACGATTCCCTT 57.563 39.130 0.00 0.00 0.00 3.95
2139 3041 4.770795 ACTCTCCATAAACGATTCCCTTG 58.229 43.478 0.00 0.00 0.00 3.61
2140 3042 4.130118 CTCTCCATAAACGATTCCCTTGG 58.870 47.826 0.00 0.00 0.00 3.61
2141 3043 3.118038 TCTCCATAAACGATTCCCTTGGG 60.118 47.826 0.00 0.00 0.00 4.12
2142 3044 1.681264 CCATAAACGATTCCCTTGGGC 59.319 52.381 0.00 0.00 0.00 5.36
2143 3045 2.654863 CATAAACGATTCCCTTGGGCT 58.345 47.619 0.00 0.00 0.00 5.19
2144 3046 2.122783 TAAACGATTCCCTTGGGCTG 57.877 50.000 0.00 0.00 0.00 4.85
2145 3047 1.250840 AAACGATTCCCTTGGGCTGC 61.251 55.000 0.00 0.00 0.00 5.25
2146 3048 2.142292 AACGATTCCCTTGGGCTGCT 62.142 55.000 0.00 0.00 0.00 4.24
2147 3049 1.379044 CGATTCCCTTGGGCTGCTT 60.379 57.895 0.00 0.00 0.00 3.91
2148 3050 1.379642 CGATTCCCTTGGGCTGCTTC 61.380 60.000 0.00 0.00 0.00 3.86
2149 3051 0.033699 GATTCCCTTGGGCTGCTTCT 60.034 55.000 0.00 0.00 0.00 2.85
2150 3052 1.212935 GATTCCCTTGGGCTGCTTCTA 59.787 52.381 0.00 0.00 0.00 2.10
2151 3053 0.328258 TTCCCTTGGGCTGCTTCTAC 59.672 55.000 0.00 0.00 0.00 2.59
2152 3054 0.547712 TCCCTTGGGCTGCTTCTACT 60.548 55.000 0.00 0.00 0.00 2.57
2153 3055 0.393537 CCCTTGGGCTGCTTCTACTG 60.394 60.000 0.00 0.00 0.00 2.74
2154 3056 0.326264 CCTTGGGCTGCTTCTACTGT 59.674 55.000 0.00 0.00 0.00 3.55
2155 3057 1.271597 CCTTGGGCTGCTTCTACTGTT 60.272 52.381 0.00 0.00 0.00 3.16
2156 3058 2.508526 CTTGGGCTGCTTCTACTGTTT 58.491 47.619 0.00 0.00 0.00 2.83
2157 3059 1.896220 TGGGCTGCTTCTACTGTTTG 58.104 50.000 0.00 0.00 0.00 2.93
2158 3060 1.142870 TGGGCTGCTTCTACTGTTTGT 59.857 47.619 0.00 0.00 0.00 2.83
2159 3061 2.370519 TGGGCTGCTTCTACTGTTTGTA 59.629 45.455 0.00 0.00 0.00 2.41
2160 3062 3.181449 TGGGCTGCTTCTACTGTTTGTAA 60.181 43.478 0.00 0.00 0.00 2.41
2161 3063 3.437049 GGGCTGCTTCTACTGTTTGTAAG 59.563 47.826 0.00 0.00 0.00 2.34
2162 3064 3.120165 GGCTGCTTCTACTGTTTGTAAGC 60.120 47.826 0.00 0.00 39.46 3.09
2163 3065 3.748568 GCTGCTTCTACTGTTTGTAAGCT 59.251 43.478 0.00 0.00 39.64 3.74
2164 3066 4.929808 GCTGCTTCTACTGTTTGTAAGCTA 59.070 41.667 0.00 0.00 39.64 3.32
2165 3067 5.062809 GCTGCTTCTACTGTTTGTAAGCTAG 59.937 44.000 0.00 0.00 39.64 3.42
2166 3068 4.929808 TGCTTCTACTGTTTGTAAGCTAGC 59.070 41.667 6.62 6.62 39.64 3.42
2167 3069 5.172205 GCTTCTACTGTTTGTAAGCTAGCT 58.828 41.667 12.68 12.68 37.31 3.32
2168 3070 5.639931 GCTTCTACTGTTTGTAAGCTAGCTT 59.360 40.000 31.38 31.38 37.31 3.74
2169 3071 6.401581 GCTTCTACTGTTTGTAAGCTAGCTTG 60.402 42.308 34.98 20.72 37.31 4.01
2170 3072 4.929808 TCTACTGTTTGTAAGCTAGCTTGC 59.070 41.667 34.98 33.18 38.77 4.01
2171 3073 3.744660 ACTGTTTGTAAGCTAGCTTGCT 58.255 40.909 35.30 17.30 46.40 3.91
2172 3074 3.748568 ACTGTTTGTAAGCTAGCTTGCTC 59.251 43.478 35.30 26.65 43.24 4.26
2173 3075 3.999663 CTGTTTGTAAGCTAGCTTGCTCT 59.000 43.478 35.30 17.24 43.24 4.09
2174 3076 5.147330 TGTTTGTAAGCTAGCTTGCTCTA 57.853 39.130 35.30 22.48 43.24 2.43
2175 3077 5.171476 TGTTTGTAAGCTAGCTTGCTCTAG 58.829 41.667 35.30 0.00 43.24 2.43
2176 3078 4.392921 TTGTAAGCTAGCTTGCTCTAGG 57.607 45.455 35.30 0.00 43.24 3.02
2177 3079 3.632333 TGTAAGCTAGCTTGCTCTAGGA 58.368 45.455 35.30 18.63 43.24 2.94
2178 3080 3.381908 TGTAAGCTAGCTTGCTCTAGGAC 59.618 47.826 35.30 24.59 43.24 3.85
2179 3081 2.452600 AGCTAGCTTGCTCTAGGACT 57.547 50.000 17.30 0.00 39.34 3.85
2180 3082 2.306847 AGCTAGCTTGCTCTAGGACTC 58.693 52.381 17.30 0.00 39.34 3.36
2181 3083 2.028130 GCTAGCTTGCTCTAGGACTCA 58.972 52.381 13.17 0.00 37.20 3.41
2182 3084 2.428890 GCTAGCTTGCTCTAGGACTCAA 59.571 50.000 13.17 0.00 37.20 3.02
2183 3085 3.069443 GCTAGCTTGCTCTAGGACTCAAT 59.931 47.826 13.17 0.00 37.20 2.57
2184 3086 3.817709 AGCTTGCTCTAGGACTCAATC 57.182 47.619 0.00 0.00 0.00 2.67
2185 3087 3.373830 AGCTTGCTCTAGGACTCAATCT 58.626 45.455 0.00 0.00 0.00 2.40
2186 3088 3.132646 AGCTTGCTCTAGGACTCAATCTG 59.867 47.826 0.00 0.00 0.00 2.90
2187 3089 3.131933 GCTTGCTCTAGGACTCAATCTGA 59.868 47.826 0.00 0.00 0.00 3.27
2188 3090 4.681744 CTTGCTCTAGGACTCAATCTGAC 58.318 47.826 0.00 0.00 0.00 3.51
2189 3091 2.685388 TGCTCTAGGACTCAATCTGACG 59.315 50.000 0.00 0.00 0.00 4.35
2190 3092 2.685897 GCTCTAGGACTCAATCTGACGT 59.314 50.000 0.00 0.00 0.00 4.34
2191 3093 3.488384 GCTCTAGGACTCAATCTGACGTG 60.488 52.174 0.00 0.00 0.00 4.49
2192 3094 3.942115 CTCTAGGACTCAATCTGACGTGA 59.058 47.826 0.00 0.00 0.00 4.35
2193 3095 4.527944 TCTAGGACTCAATCTGACGTGAT 58.472 43.478 0.00 0.00 0.00 3.06
2194 3096 4.950475 TCTAGGACTCAATCTGACGTGATT 59.050 41.667 0.00 0.00 37.16 2.57
2203 3105 5.551760 AATCTGACGTGATTGATCAAACC 57.448 39.130 13.09 8.15 38.75 3.27
2204 3106 3.334691 TCTGACGTGATTGATCAAACCC 58.665 45.455 13.09 0.00 38.75 4.11
2205 3107 3.073678 CTGACGTGATTGATCAAACCCA 58.926 45.455 13.09 8.21 38.75 4.51
2206 3108 3.684908 TGACGTGATTGATCAAACCCAT 58.315 40.909 13.09 0.00 38.75 4.00
2207 3109 3.689161 TGACGTGATTGATCAAACCCATC 59.311 43.478 13.09 5.64 38.75 3.51
2208 3110 2.677836 ACGTGATTGATCAAACCCATCG 59.322 45.455 13.09 16.35 38.75 3.84
2209 3111 2.677836 CGTGATTGATCAAACCCATCGT 59.322 45.455 13.09 0.00 38.75 3.73
2210 3112 3.868661 CGTGATTGATCAAACCCATCGTA 59.131 43.478 13.09 0.00 38.75 3.43
2211 3113 4.331443 CGTGATTGATCAAACCCATCGTAA 59.669 41.667 13.09 0.00 38.75 3.18
2212 3114 5.163804 CGTGATTGATCAAACCCATCGTAAA 60.164 40.000 13.09 0.00 38.75 2.01
2213 3115 6.458206 CGTGATTGATCAAACCCATCGTAAAT 60.458 38.462 13.09 0.00 38.75 1.40
2214 3116 7.254624 CGTGATTGATCAAACCCATCGTAAATA 60.255 37.037 13.09 0.00 38.75 1.40
2215 3117 8.567948 GTGATTGATCAAACCCATCGTAAATAT 58.432 33.333 13.09 0.00 38.75 1.28
2216 3118 9.130661 TGATTGATCAAACCCATCGTAAATATT 57.869 29.630 13.09 0.00 33.08 1.28
2217 3119 9.965824 GATTGATCAAACCCATCGTAAATATTT 57.034 29.630 13.09 5.89 0.00 1.40
2219 3121 9.579768 TTGATCAAACCCATCGTAAATATTTTG 57.420 29.630 5.45 0.00 0.00 2.44
2220 3122 8.961634 TGATCAAACCCATCGTAAATATTTTGA 58.038 29.630 5.91 5.71 36.46 2.69
2221 3123 9.965824 GATCAAACCCATCGTAAATATTTTGAT 57.034 29.630 5.91 7.75 42.34 2.57
2227 3129 9.179909 ACCCATCGTAAATATTTTGATACAACA 57.820 29.630 5.91 0.00 0.00 3.33
2238 3140 9.926158 ATATTTTGATACAACAATTGCACTTCA 57.074 25.926 5.05 0.16 0.00 3.02
2239 3141 7.697352 TTTTGATACAACAATTGCACTTCAG 57.303 32.000 5.05 0.00 0.00 3.02
2240 3142 6.631971 TTGATACAACAATTGCACTTCAGA 57.368 33.333 5.05 0.00 0.00 3.27
2241 3143 6.000891 TGATACAACAATTGCACTTCAGAC 57.999 37.500 5.05 0.00 0.00 3.51
2242 3144 5.764686 TGATACAACAATTGCACTTCAGACT 59.235 36.000 5.05 0.00 0.00 3.24
2243 3145 4.558538 ACAACAATTGCACTTCAGACTC 57.441 40.909 5.05 0.00 0.00 3.36
2244 3146 3.947196 ACAACAATTGCACTTCAGACTCA 59.053 39.130 5.05 0.00 0.00 3.41
2245 3147 4.036027 ACAACAATTGCACTTCAGACTCAG 59.964 41.667 5.05 0.00 0.00 3.35
2246 3148 4.077300 ACAATTGCACTTCAGACTCAGA 57.923 40.909 5.05 0.00 0.00 3.27
2247 3149 4.063689 ACAATTGCACTTCAGACTCAGAG 58.936 43.478 5.05 0.00 0.00 3.35
2248 3150 2.160822 TTGCACTTCAGACTCAGAGC 57.839 50.000 0.00 0.00 0.00 4.09
2249 3151 1.043022 TGCACTTCAGACTCAGAGCA 58.957 50.000 0.00 0.58 34.69 4.26
2250 3152 1.622312 TGCACTTCAGACTCAGAGCAT 59.378 47.619 0.00 0.00 32.48 3.79
2251 3153 2.270047 GCACTTCAGACTCAGAGCATC 58.730 52.381 0.00 0.00 0.00 3.91
2268 3170 6.486253 GAGCATCTACAACTGTGATTTTCA 57.514 37.500 0.00 0.00 0.00 2.69
2269 3171 7.081526 GAGCATCTACAACTGTGATTTTCAT 57.918 36.000 0.00 0.00 0.00 2.57
2270 3172 8.201554 GAGCATCTACAACTGTGATTTTCATA 57.798 34.615 0.00 0.00 0.00 2.15
2271 3173 8.743085 AGCATCTACAACTGTGATTTTCATAT 57.257 30.769 0.00 0.00 0.00 1.78
2272 3174 8.834465 AGCATCTACAACTGTGATTTTCATATC 58.166 33.333 0.00 0.00 0.00 1.63
2273 3175 8.615211 GCATCTACAACTGTGATTTTCATATCA 58.385 33.333 0.00 0.00 32.29 2.15
2276 3178 9.371136 TCTACAACTGTGATTTTCATATCAGAC 57.629 33.333 0.00 0.00 35.32 3.51
2277 3179 7.383102 ACAACTGTGATTTTCATATCAGACC 57.617 36.000 0.00 0.00 35.32 3.85
2278 3180 6.375455 ACAACTGTGATTTTCATATCAGACCC 59.625 38.462 0.00 0.00 35.32 4.46
2279 3181 5.440610 ACTGTGATTTTCATATCAGACCCC 58.559 41.667 0.00 0.00 35.32 4.95
2280 3182 4.792068 TGTGATTTTCATATCAGACCCCC 58.208 43.478 0.00 0.00 35.32 5.40
2281 3183 4.478317 TGTGATTTTCATATCAGACCCCCT 59.522 41.667 0.00 0.00 35.32 4.79
2282 3184 5.669904 TGTGATTTTCATATCAGACCCCCTA 59.330 40.000 0.00 0.00 35.32 3.53
2283 3185 5.998363 GTGATTTTCATATCAGACCCCCTAC 59.002 44.000 0.00 0.00 35.32 3.18
2284 3186 5.669904 TGATTTTCATATCAGACCCCCTACA 59.330 40.000 0.00 0.00 31.19 2.74
2285 3187 5.367945 TTTTCATATCAGACCCCCTACAC 57.632 43.478 0.00 0.00 0.00 2.90
2286 3188 2.594131 TCATATCAGACCCCCTACACG 58.406 52.381 0.00 0.00 0.00 4.49
2287 3189 2.091499 TCATATCAGACCCCCTACACGT 60.091 50.000 0.00 0.00 0.00 4.49
2288 3190 2.062971 TATCAGACCCCCTACACGTC 57.937 55.000 0.00 0.00 0.00 4.34
2289 3191 0.686769 ATCAGACCCCCTACACGTCC 60.687 60.000 0.00 0.00 0.00 4.79
2290 3192 2.362120 AGACCCCCTACACGTCCG 60.362 66.667 0.00 0.00 0.00 4.79
2291 3193 4.139234 GACCCCCTACACGTCCGC 62.139 72.222 0.00 0.00 0.00 5.54
2295 3197 4.487412 CCCTACACGTCCGCGGAC 62.487 72.222 41.75 41.75 43.45 4.79
2315 3217 4.477975 GTCCGGACGCGTGAGAGG 62.478 72.222 20.70 14.60 34.13 3.69
2316 3218 4.710167 TCCGGACGCGTGAGAGGA 62.710 66.667 20.70 16.87 34.13 3.71
2317 3219 4.477975 CCGGACGCGTGAGAGGAC 62.478 72.222 20.70 0.00 34.13 3.85
2318 3220 3.733960 CGGACGCGTGAGAGGACA 61.734 66.667 20.70 0.00 34.13 4.02
2319 3221 2.179517 GGACGCGTGAGAGGACAG 59.820 66.667 20.70 0.00 34.13 3.51
2320 3222 2.627737 GGACGCGTGAGAGGACAGT 61.628 63.158 20.70 0.00 34.13 3.55
2321 3223 1.442857 GACGCGTGAGAGGACAGTG 60.443 63.158 20.70 0.00 34.13 3.66
2322 3224 1.853114 GACGCGTGAGAGGACAGTGA 61.853 60.000 20.70 0.00 34.13 3.41
2323 3225 1.442857 CGCGTGAGAGGACAGTGAC 60.443 63.158 0.00 0.00 0.00 3.67
2324 3226 1.080434 GCGTGAGAGGACAGTGACC 60.080 63.158 3.14 3.14 0.00 4.02
2325 3227 1.210413 CGTGAGAGGACAGTGACCG 59.790 63.158 5.97 0.00 0.00 4.79
2326 3228 1.587054 GTGAGAGGACAGTGACCGG 59.413 63.158 0.00 0.00 0.00 5.28
2327 3229 1.153061 TGAGAGGACAGTGACCGGT 59.847 57.895 6.92 6.92 0.00 5.28
2328 3230 0.894184 TGAGAGGACAGTGACCGGTC 60.894 60.000 28.17 28.17 35.35 4.79
2329 3231 0.894184 GAGAGGACAGTGACCGGTCA 60.894 60.000 33.23 33.23 37.50 4.02
2341 3243 3.670625 TGACCGGTCACTCCTTATTTTG 58.329 45.455 33.23 0.00 34.14 2.44
2342 3244 3.007635 GACCGGTCACTCCTTATTTTGG 58.992 50.000 29.75 0.00 0.00 3.28
2343 3245 2.374170 ACCGGTCACTCCTTATTTTGGT 59.626 45.455 0.00 0.00 0.00 3.67
2344 3246 2.747446 CCGGTCACTCCTTATTTTGGTG 59.253 50.000 0.00 0.00 0.00 4.17
2345 3247 2.161609 CGGTCACTCCTTATTTTGGTGC 59.838 50.000 0.00 0.00 0.00 5.01
2346 3248 3.153919 GGTCACTCCTTATTTTGGTGCA 58.846 45.455 0.00 0.00 0.00 4.57
2347 3249 3.763897 GGTCACTCCTTATTTTGGTGCAT 59.236 43.478 0.00 0.00 0.00 3.96
2348 3250 4.142381 GGTCACTCCTTATTTTGGTGCATC 60.142 45.833 0.00 0.00 0.00 3.91
2349 3251 4.016444 TCACTCCTTATTTTGGTGCATCC 58.984 43.478 0.00 0.00 0.00 3.51
2350 3252 3.016736 ACTCCTTATTTTGGTGCATCCG 58.983 45.455 0.00 0.00 39.52 4.18
2351 3253 1.748493 TCCTTATTTTGGTGCATCCGC 59.252 47.619 0.00 0.00 39.52 5.54
2360 3262 3.073378 TGCATCCGCACCCTTGTA 58.927 55.556 0.00 0.00 45.36 2.41
2361 3263 1.376848 TGCATCCGCACCCTTGTAA 59.623 52.632 0.00 0.00 45.36 2.41
2362 3264 0.958382 TGCATCCGCACCCTTGTAAC 60.958 55.000 0.00 0.00 45.36 2.50
2363 3265 0.676782 GCATCCGCACCCTTGTAACT 60.677 55.000 0.00 0.00 38.36 2.24
2364 3266 1.369625 CATCCGCACCCTTGTAACTC 58.630 55.000 0.00 0.00 0.00 3.01
2365 3267 0.981183 ATCCGCACCCTTGTAACTCA 59.019 50.000 0.00 0.00 0.00 3.41
2366 3268 0.759959 TCCGCACCCTTGTAACTCAA 59.240 50.000 0.00 0.00 34.61 3.02
2367 3269 1.141254 TCCGCACCCTTGTAACTCAAA 59.859 47.619 0.00 0.00 35.48 2.69
2368 3270 2.159382 CCGCACCCTTGTAACTCAAAT 58.841 47.619 0.00 0.00 35.48 2.32
2369 3271 2.161609 CCGCACCCTTGTAACTCAAATC 59.838 50.000 0.00 0.00 35.48 2.17
2370 3272 2.161609 CGCACCCTTGTAACTCAAATCC 59.838 50.000 0.00 0.00 35.48 3.01
2371 3273 2.161609 GCACCCTTGTAACTCAAATCCG 59.838 50.000 0.00 0.00 35.48 4.18
2372 3274 3.670625 CACCCTTGTAACTCAAATCCGA 58.329 45.455 0.00 0.00 35.48 4.55
2373 3275 4.261801 CACCCTTGTAACTCAAATCCGAT 58.738 43.478 0.00 0.00 35.48 4.18
2374 3276 4.332819 CACCCTTGTAACTCAAATCCGATC 59.667 45.833 0.00 0.00 35.48 3.69
2375 3277 3.877508 CCCTTGTAACTCAAATCCGATCC 59.122 47.826 0.00 0.00 35.48 3.36
2376 3278 4.513442 CCTTGTAACTCAAATCCGATCCA 58.487 43.478 0.00 0.00 35.48 3.41
2377 3279 5.126067 CCTTGTAACTCAAATCCGATCCAT 58.874 41.667 0.00 0.00 35.48 3.41
2378 3280 5.008019 CCTTGTAACTCAAATCCGATCCATG 59.992 44.000 0.00 0.00 35.48 3.66
2379 3281 5.351948 TGTAACTCAAATCCGATCCATGA 57.648 39.130 0.00 0.00 0.00 3.07
2380 3282 5.928976 TGTAACTCAAATCCGATCCATGAT 58.071 37.500 0.00 0.00 0.00 2.45
2381 3283 5.759763 TGTAACTCAAATCCGATCCATGATG 59.240 40.000 0.00 0.00 0.00 3.07
2382 3284 3.144506 ACTCAAATCCGATCCATGATGC 58.855 45.455 0.00 0.00 0.00 3.91
2383 3285 2.145536 TCAAATCCGATCCATGATGCG 58.854 47.619 0.00 0.00 0.00 4.73
2384 3286 0.877071 AAATCCGATCCATGATGCGC 59.123 50.000 0.00 0.00 0.00 6.09
2385 3287 0.957395 AATCCGATCCATGATGCGCC 60.957 55.000 4.18 0.00 0.00 6.53
2386 3288 3.417224 CCGATCCATGATGCGCCG 61.417 66.667 4.18 0.00 0.00 6.46
2387 3289 4.081030 CGATCCATGATGCGCCGC 62.081 66.667 4.18 0.00 0.00 6.53
2388 3290 3.730761 GATCCATGATGCGCCGCC 61.731 66.667 6.63 0.00 0.00 6.13
2415 3317 4.181010 CCCATCACCAGGGCCTCG 62.181 72.222 0.95 0.00 39.96 4.63
2416 3318 4.864334 CCATCACCAGGGCCTCGC 62.864 72.222 0.95 0.00 0.00 5.03
2427 3329 4.681978 GCCTCGCGGGTTGTCACT 62.682 66.667 4.71 0.00 37.43 3.41
2428 3330 2.432628 CCTCGCGGGTTGTCACTC 60.433 66.667 4.71 0.00 0.00 3.51
2434 3336 4.980805 GGGTTGTCACTCGCGCCA 62.981 66.667 0.00 0.00 0.00 5.69
2435 3337 3.712881 GGTTGTCACTCGCGCCAC 61.713 66.667 0.00 0.00 0.00 5.01
2436 3338 4.059459 GTTGTCACTCGCGCCACG 62.059 66.667 0.00 0.00 45.62 4.94
2468 3370 4.176851 GACTCGGGCGTCCTCGAC 62.177 72.222 3.66 0.00 45.48 4.20
2469 3371 4.719106 ACTCGGGCGTCCTCGACT 62.719 66.667 3.66 0.00 45.51 4.18
2476 3378 3.691342 CGTCCTCGACTGGCCCAA 61.691 66.667 0.00 0.00 39.71 4.12
2477 3379 2.047179 GTCCTCGACTGGCCCAAC 60.047 66.667 0.00 0.00 0.00 3.77
2478 3380 3.691342 TCCTCGACTGGCCCAACG 61.691 66.667 0.00 2.90 0.00 4.10
2479 3381 4.003788 CCTCGACTGGCCCAACGT 62.004 66.667 0.00 0.00 0.00 3.99
2480 3382 2.432628 CTCGACTGGCCCAACGTC 60.433 66.667 0.00 0.54 0.00 4.34
2483 3385 2.737376 GACTGGCCCAACGTCGAC 60.737 66.667 5.18 5.18 0.00 4.20
2484 3386 4.657824 ACTGGCCCAACGTCGACG 62.658 66.667 34.58 34.58 46.33 5.12
2485 3387 4.351938 CTGGCCCAACGTCGACGA 62.352 66.667 41.52 18.32 43.02 4.20
2486 3388 4.351938 TGGCCCAACGTCGACGAG 62.352 66.667 41.52 30.50 43.02 4.18
2490 3392 4.351938 CCAACGTCGACGAGGGCA 62.352 66.667 41.52 0.00 43.02 5.36
2491 3393 3.103911 CAACGTCGACGAGGGCAC 61.104 66.667 41.52 0.00 43.02 5.01
2492 3394 3.598715 AACGTCGACGAGGGCACA 61.599 61.111 41.52 0.00 43.02 4.57
2493 3395 3.141522 AACGTCGACGAGGGCACAA 62.142 57.895 41.52 0.00 43.02 3.33
2494 3396 2.805353 CGTCGACGAGGGCACAAG 60.805 66.667 33.35 0.00 43.02 3.16
2495 3397 3.112709 GTCGACGAGGGCACAAGC 61.113 66.667 0.00 0.00 41.10 4.01
2496 3398 3.611674 TCGACGAGGGCACAAGCA 61.612 61.111 0.00 0.00 44.61 3.91
2513 3415 2.111043 ACCAAGCGGTGTCAGTGG 59.889 61.111 0.80 0.80 46.79 4.00
2514 3416 2.425592 CCAAGCGGTGTCAGTGGA 59.574 61.111 0.00 0.00 0.00 4.02
2515 3417 1.961277 CCAAGCGGTGTCAGTGGAC 60.961 63.158 0.00 0.00 44.57 4.02
2523 3425 4.573162 GTCAGTGGACAGCGTACC 57.427 61.111 0.00 0.00 43.73 3.34
2524 3426 1.965219 GTCAGTGGACAGCGTACCT 59.035 57.895 0.00 0.00 43.73 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.321648 TGATGGGCACGCTCCACT 61.322 61.111 1.95 0.00 37.08 4.00
147 148 1.276705 TCTTGTACATGTTAGCCGGCA 59.723 47.619 31.54 12.31 0.00 5.69
155 156 0.398696 TGGGCCGTCTTGTACATGTT 59.601 50.000 2.30 0.00 0.00 2.71
156 157 0.036388 CTGGGCCGTCTTGTACATGT 60.036 55.000 2.69 2.69 0.00 3.21
180 370 2.740826 GCAAAGGCGAGCACGGTA 60.741 61.111 5.52 0.00 40.15 4.02
226 416 1.565067 GGTTTCTCCCGTCCCTTCTA 58.435 55.000 0.00 0.00 0.00 2.10
287 478 5.754890 CCGATCCATTCCCAATTCATTTTTC 59.245 40.000 0.00 0.00 0.00 2.29
517 709 2.100989 CTCTACTCCTAAACGGGCAGT 58.899 52.381 0.00 0.00 0.00 4.40
681 879 6.205076 TGGAAATGAAGCACCAAAATCAATTG 59.795 34.615 0.00 0.00 0.00 2.32
747 945 4.868171 TCGGTACTCAGTCATTAATGCAAC 59.132 41.667 10.76 4.96 0.00 4.17
793 1653 1.131883 ACAGATTTCGTCGGTACTCGG 59.868 52.381 0.00 0.00 39.77 4.63
794 1654 2.539346 ACAGATTTCGTCGGTACTCG 57.461 50.000 0.00 0.00 33.28 4.18
817 1677 7.921786 TTTCATCGGTTCTCAGTCATTAATT 57.078 32.000 0.00 0.00 0.00 1.40
834 1694 8.755941 AGTCATTAATACGAACAGATTTCATCG 58.244 33.333 0.00 0.00 40.90 3.84
848 1708 6.210796 TCATCGTTACCCAGTCATTAATACG 58.789 40.000 0.00 0.00 0.00 3.06
862 1722 1.834178 CGTACGTCGTTCATCGTTACC 59.166 52.381 7.22 0.00 40.70 2.85
866 1726 1.195448 AGTTCGTACGTCGTTCATCGT 59.805 47.619 16.05 0.00 42.82 3.73
1011 1875 3.056465 TGCACATCGTGTACTTGTCCATA 60.056 43.478 0.00 0.00 35.75 2.74
1040 1907 5.738118 AGTAGCAGAACATACGAGTAGTC 57.262 43.478 0.00 0.00 0.00 2.59
1115 1986 5.806818 TCATAACCGGTGGACTAAATTCAA 58.193 37.500 8.52 0.00 0.00 2.69
1177 2048 7.497925 ACTTCTTAGAAAAGCGAAAGAACAT 57.502 32.000 0.00 0.00 34.95 2.71
1182 2053 9.141400 AGTACATACTTCTTAGAAAAGCGAAAG 57.859 33.333 0.00 0.00 31.13 2.62
1482 2359 0.905357 AAGGAGGAAGGGATGTCGTG 59.095 55.000 0.00 0.00 0.00 4.35
1736 2638 0.533951 AATTGCTTAGGCCTGCTTGC 59.466 50.000 17.99 14.34 37.74 4.01
1830 2732 2.892215 GGGTCCCACCATAAACGAAAAA 59.108 45.455 1.78 0.00 41.02 1.94
1831 2733 2.516906 GGGTCCCACCATAAACGAAAA 58.483 47.619 1.78 0.00 41.02 2.29
1832 2734 1.611148 CGGGTCCCACCATAAACGAAA 60.611 52.381 9.12 0.00 41.02 3.46
1833 2735 0.036199 CGGGTCCCACCATAAACGAA 60.036 55.000 9.12 0.00 41.02 3.85
1834 2736 1.597989 CGGGTCCCACCATAAACGA 59.402 57.895 9.12 0.00 41.02 3.85
1835 2737 1.450669 CCGGGTCCCACCATAAACG 60.451 63.158 9.12 0.00 41.02 3.60
1836 2738 1.751544 GCCGGGTCCCACCATAAAC 60.752 63.158 9.12 0.00 41.02 2.01
1837 2739 1.926489 AGCCGGGTCCCACCATAAA 60.926 57.895 9.12 0.00 41.02 1.40
1838 2740 2.285818 AGCCGGGTCCCACCATAA 60.286 61.111 9.12 0.00 41.02 1.90
1839 2741 2.907482 ATCAGCCGGGTCCCACCATA 62.907 60.000 1.27 0.00 41.02 2.74
1842 2744 2.781431 AAAATCAGCCGGGTCCCACC 62.781 60.000 1.27 0.00 37.60 4.61
1843 2745 0.898326 AAAAATCAGCCGGGTCCCAC 60.898 55.000 1.27 0.00 0.00 4.61
1844 2746 1.462928 AAAAATCAGCCGGGTCCCA 59.537 52.632 1.27 0.00 0.00 4.37
1845 2747 4.434483 AAAAATCAGCCGGGTCCC 57.566 55.556 1.27 0.00 0.00 4.46
1859 2761 2.649531 AGACCCATGACGGACAAAAA 57.350 45.000 0.00 0.00 36.56 1.94
1860 2762 2.621055 CAAAGACCCATGACGGACAAAA 59.379 45.455 0.00 0.00 36.56 2.44
1861 2763 2.226330 CAAAGACCCATGACGGACAAA 58.774 47.619 0.00 0.00 36.56 2.83
1862 2764 1.890876 CAAAGACCCATGACGGACAA 58.109 50.000 0.00 0.00 36.56 3.18
1863 2765 0.605319 GCAAAGACCCATGACGGACA 60.605 55.000 0.00 0.00 36.56 4.02
1864 2766 1.305930 GGCAAAGACCCATGACGGAC 61.306 60.000 0.00 0.00 36.56 4.79
1865 2767 1.002624 GGCAAAGACCCATGACGGA 60.003 57.895 0.00 0.00 36.56 4.69
1866 2768 0.609131 AAGGCAAAGACCCATGACGG 60.609 55.000 0.00 0.00 0.00 4.79
1867 2769 1.247567 AAAGGCAAAGACCCATGACG 58.752 50.000 0.00 0.00 0.00 4.35
1868 2770 3.751479 AAAAAGGCAAAGACCCATGAC 57.249 42.857 0.00 0.00 0.00 3.06
1889 2791 9.878667 TCAATATGTCTTTTACCTGACGATAAA 57.121 29.630 0.00 0.00 36.10 1.40
1891 2793 9.476202 CATCAATATGTCTTTTACCTGACGATA 57.524 33.333 0.00 0.00 36.10 2.92
1892 2794 7.442364 CCATCAATATGTCTTTTACCTGACGAT 59.558 37.037 0.00 0.00 36.10 3.73
1893 2795 6.761242 CCATCAATATGTCTTTTACCTGACGA 59.239 38.462 0.00 0.00 36.10 4.20
1894 2796 6.017934 CCCATCAATATGTCTTTTACCTGACG 60.018 42.308 0.00 0.00 36.10 4.35
1895 2797 6.238759 GCCCATCAATATGTCTTTTACCTGAC 60.239 42.308 0.00 0.00 0.00 3.51
1896 2798 5.827797 GCCCATCAATATGTCTTTTACCTGA 59.172 40.000 0.00 0.00 0.00 3.86
1897 2799 5.010012 GGCCCATCAATATGTCTTTTACCTG 59.990 44.000 0.00 0.00 0.00 4.00
1898 2800 5.103515 AGGCCCATCAATATGTCTTTTACCT 60.104 40.000 0.00 0.00 0.00 3.08
1899 2801 5.010012 CAGGCCCATCAATATGTCTTTTACC 59.990 44.000 0.00 0.00 0.00 2.85
1900 2802 5.507985 GCAGGCCCATCAATATGTCTTTTAC 60.508 44.000 0.00 0.00 0.00 2.01
1901 2803 4.584325 GCAGGCCCATCAATATGTCTTTTA 59.416 41.667 0.00 0.00 0.00 1.52
1902 2804 3.385755 GCAGGCCCATCAATATGTCTTTT 59.614 43.478 0.00 0.00 0.00 2.27
1903 2805 2.961062 GCAGGCCCATCAATATGTCTTT 59.039 45.455 0.00 0.00 0.00 2.52
1904 2806 2.176364 AGCAGGCCCATCAATATGTCTT 59.824 45.455 0.00 0.00 0.00 3.01
1905 2807 1.779092 AGCAGGCCCATCAATATGTCT 59.221 47.619 0.00 0.00 0.00 3.41
1906 2808 2.157738 GAGCAGGCCCATCAATATGTC 58.842 52.381 0.00 0.00 0.00 3.06
1907 2809 1.544093 CGAGCAGGCCCATCAATATGT 60.544 52.381 0.00 0.00 0.00 2.29
1908 2810 1.162698 CGAGCAGGCCCATCAATATG 58.837 55.000 0.00 0.00 0.00 1.78
1909 2811 1.059098 TCGAGCAGGCCCATCAATAT 58.941 50.000 0.00 0.00 0.00 1.28
1910 2812 0.836606 TTCGAGCAGGCCCATCAATA 59.163 50.000 0.00 0.00 0.00 1.90
1911 2813 0.034186 TTTCGAGCAGGCCCATCAAT 60.034 50.000 0.00 0.00 0.00 2.57
1912 2814 0.034186 ATTTCGAGCAGGCCCATCAA 60.034 50.000 0.00 0.00 0.00 2.57
1913 2815 0.836606 TATTTCGAGCAGGCCCATCA 59.163 50.000 0.00 0.00 0.00 3.07
1914 2816 1.230324 GTATTTCGAGCAGGCCCATC 58.770 55.000 0.00 0.00 0.00 3.51
1915 2817 0.179018 GGTATTTCGAGCAGGCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
1916 2818 1.223487 GGTATTTCGAGCAGGCCCA 59.777 57.895 0.00 0.00 0.00 5.36
1917 2819 1.526225 GGGTATTTCGAGCAGGCCC 60.526 63.158 0.00 0.00 0.00 5.80
1918 2820 1.887707 CGGGTATTTCGAGCAGGCC 60.888 63.158 0.00 0.00 0.00 5.19
1919 2821 0.103572 TACGGGTATTTCGAGCAGGC 59.896 55.000 0.00 0.00 0.00 4.85
1920 2822 1.135527 TGTACGGGTATTTCGAGCAGG 59.864 52.381 0.00 0.00 0.00 4.85
1921 2823 2.190981 GTGTACGGGTATTTCGAGCAG 58.809 52.381 0.00 0.00 0.00 4.24
1922 2824 1.467883 CGTGTACGGGTATTTCGAGCA 60.468 52.381 0.00 0.00 35.37 4.26
1923 2825 1.194495 CGTGTACGGGTATTTCGAGC 58.806 55.000 0.00 0.00 35.37 5.03
1935 2837 1.082117 GGTCAATGGAGCCGTGTACG 61.082 60.000 0.00 0.00 35.49 3.67
1936 2838 0.036765 TGGTCAATGGAGCCGTGTAC 60.037 55.000 0.00 0.00 40.83 2.90
1937 2839 0.249120 CTGGTCAATGGAGCCGTGTA 59.751 55.000 0.00 0.00 40.83 2.90
1938 2840 1.003355 CTGGTCAATGGAGCCGTGT 60.003 57.895 0.00 0.00 40.83 4.49
1939 2841 2.401766 GCTGGTCAATGGAGCCGTG 61.402 63.158 0.00 0.00 40.83 4.94
1940 2842 1.264749 TAGCTGGTCAATGGAGCCGT 61.265 55.000 0.00 0.00 40.83 5.68
1941 2843 0.107703 TTAGCTGGTCAATGGAGCCG 60.108 55.000 0.00 0.00 40.83 5.52
1942 2844 2.128771 TTTAGCTGGTCAATGGAGCC 57.871 50.000 0.00 0.00 40.83 4.70
1960 2862 7.121168 TCGAATCTCAGCATAGAACCAATTTTT 59.879 33.333 0.00 0.00 0.00 1.94
1961 2863 6.599244 TCGAATCTCAGCATAGAACCAATTTT 59.401 34.615 0.00 0.00 0.00 1.82
1962 2864 6.115446 TCGAATCTCAGCATAGAACCAATTT 58.885 36.000 0.00 0.00 0.00 1.82
1963 2865 5.674525 TCGAATCTCAGCATAGAACCAATT 58.325 37.500 0.00 0.00 0.00 2.32
1964 2866 5.282055 TCGAATCTCAGCATAGAACCAAT 57.718 39.130 0.00 0.00 0.00 3.16
1965 2867 4.736126 TCGAATCTCAGCATAGAACCAA 57.264 40.909 0.00 0.00 0.00 3.67
1966 2868 4.081697 TGTTCGAATCTCAGCATAGAACCA 60.082 41.667 0.00 0.00 36.60 3.67
1967 2869 4.268884 GTGTTCGAATCTCAGCATAGAACC 59.731 45.833 0.00 0.00 36.60 3.62
1968 2870 4.864806 TGTGTTCGAATCTCAGCATAGAAC 59.135 41.667 0.00 0.00 37.56 3.01
1969 2871 5.072040 TGTGTTCGAATCTCAGCATAGAA 57.928 39.130 0.00 0.00 0.00 2.10
1970 2872 4.718940 TGTGTTCGAATCTCAGCATAGA 57.281 40.909 0.00 0.00 0.00 1.98
1971 2873 4.627035 TGTTGTGTTCGAATCTCAGCATAG 59.373 41.667 0.00 0.00 0.00 2.23
1972 2874 4.388773 GTGTTGTGTTCGAATCTCAGCATA 59.611 41.667 0.00 0.00 0.00 3.14
1973 2875 3.187227 GTGTTGTGTTCGAATCTCAGCAT 59.813 43.478 0.00 0.00 0.00 3.79
1974 2876 2.543848 GTGTTGTGTTCGAATCTCAGCA 59.456 45.455 0.00 7.96 0.00 4.41
1975 2877 2.096218 GGTGTTGTGTTCGAATCTCAGC 60.096 50.000 0.00 5.58 0.00 4.26
1976 2878 3.185188 CAGGTGTTGTGTTCGAATCTCAG 59.815 47.826 0.00 0.00 0.00 3.35
1977 2879 3.130633 CAGGTGTTGTGTTCGAATCTCA 58.869 45.455 0.00 0.00 0.00 3.27
1978 2880 2.096218 GCAGGTGTTGTGTTCGAATCTC 60.096 50.000 0.00 0.00 0.00 2.75
1979 2881 1.873591 GCAGGTGTTGTGTTCGAATCT 59.126 47.619 0.00 0.00 0.00 2.40
1980 2882 1.069227 GGCAGGTGTTGTGTTCGAATC 60.069 52.381 0.00 0.00 0.00 2.52
1981 2883 0.951558 GGCAGGTGTTGTGTTCGAAT 59.048 50.000 0.00 0.00 0.00 3.34
1982 2884 1.098712 GGGCAGGTGTTGTGTTCGAA 61.099 55.000 0.00 0.00 0.00 3.71
1983 2885 1.525077 GGGCAGGTGTTGTGTTCGA 60.525 57.895 0.00 0.00 0.00 3.71
1984 2886 1.101049 AAGGGCAGGTGTTGTGTTCG 61.101 55.000 0.00 0.00 0.00 3.95
1985 2887 0.668535 GAAGGGCAGGTGTTGTGTTC 59.331 55.000 0.00 0.00 0.00 3.18
1986 2888 0.033601 TGAAGGGCAGGTGTTGTGTT 60.034 50.000 0.00 0.00 0.00 3.32
1987 2889 0.751643 GTGAAGGGCAGGTGTTGTGT 60.752 55.000 0.00 0.00 0.00 3.72
1988 2890 0.466189 AGTGAAGGGCAGGTGTTGTG 60.466 55.000 0.00 0.00 0.00 3.33
1989 2891 1.136828 TAGTGAAGGGCAGGTGTTGT 58.863 50.000 0.00 0.00 0.00 3.32
1990 2892 1.202758 TGTAGTGAAGGGCAGGTGTTG 60.203 52.381 0.00 0.00 0.00 3.33
1991 2893 1.136828 TGTAGTGAAGGGCAGGTGTT 58.863 50.000 0.00 0.00 0.00 3.32
1992 2894 1.362224 ATGTAGTGAAGGGCAGGTGT 58.638 50.000 0.00 0.00 0.00 4.16
1993 2895 3.627395 TTATGTAGTGAAGGGCAGGTG 57.373 47.619 0.00 0.00 0.00 4.00
1994 2896 3.523564 ACATTATGTAGTGAAGGGCAGGT 59.476 43.478 0.00 0.00 0.00 4.00
1995 2897 4.156455 ACATTATGTAGTGAAGGGCAGG 57.844 45.455 0.00 0.00 0.00 4.85
1996 2898 5.431765 AGAACATTATGTAGTGAAGGGCAG 58.568 41.667 0.00 0.00 0.00 4.85
1997 2899 5.435686 AGAACATTATGTAGTGAAGGGCA 57.564 39.130 0.00 0.00 0.00 5.36
1998 2900 5.467063 GCTAGAACATTATGTAGTGAAGGGC 59.533 44.000 0.00 0.00 0.00 5.19
1999 2901 5.992217 GGCTAGAACATTATGTAGTGAAGGG 59.008 44.000 0.00 0.00 0.00 3.95
2000 2902 6.480320 GTGGCTAGAACATTATGTAGTGAAGG 59.520 42.308 0.00 0.00 0.00 3.46
2001 2903 7.268586 AGTGGCTAGAACATTATGTAGTGAAG 58.731 38.462 0.00 0.00 0.00 3.02
2002 2904 7.182817 AGTGGCTAGAACATTATGTAGTGAA 57.817 36.000 0.00 0.00 0.00 3.18
2003 2905 6.791867 AGTGGCTAGAACATTATGTAGTGA 57.208 37.500 0.00 0.00 0.00 3.41
2004 2906 7.169982 GCTTAGTGGCTAGAACATTATGTAGTG 59.830 40.741 0.00 0.00 0.00 2.74
2005 2907 7.070074 AGCTTAGTGGCTAGAACATTATGTAGT 59.930 37.037 0.00 0.00 41.16 2.73
2006 2908 7.437748 AGCTTAGTGGCTAGAACATTATGTAG 58.562 38.462 0.00 0.00 41.16 2.74
2007 2909 7.361457 AGCTTAGTGGCTAGAACATTATGTA 57.639 36.000 0.00 0.00 41.16 2.29
2008 2910 6.240549 AGCTTAGTGGCTAGAACATTATGT 57.759 37.500 0.00 0.00 41.16 2.29
2009 2911 9.579768 CTATAGCTTAGTGGCTAGAACATTATG 57.420 37.037 0.00 0.00 46.13 1.90
2010 2912 8.254508 GCTATAGCTTAGTGGCTAGAACATTAT 58.745 37.037 17.75 0.00 46.13 1.28
2011 2913 7.603651 GCTATAGCTTAGTGGCTAGAACATTA 58.396 38.462 17.75 0.00 46.13 1.90
2012 2914 6.459923 GCTATAGCTTAGTGGCTAGAACATT 58.540 40.000 17.75 0.00 46.13 2.71
2013 2915 6.031751 GCTATAGCTTAGTGGCTAGAACAT 57.968 41.667 17.75 0.00 46.13 2.71
2014 2916 5.455056 GCTATAGCTTAGTGGCTAGAACA 57.545 43.478 17.75 0.00 46.13 3.18
2029 2931 5.983720 TCAAGTTATTCCACGAAGCTATAGC 59.016 40.000 17.33 17.33 42.49 2.97
2030 2932 7.329717 GGATCAAGTTATTCCACGAAGCTATAG 59.670 40.741 0.00 0.00 0.00 1.31
2031 2933 7.152645 GGATCAAGTTATTCCACGAAGCTATA 58.847 38.462 0.00 0.00 0.00 1.31
2032 2934 5.992217 GGATCAAGTTATTCCACGAAGCTAT 59.008 40.000 0.00 0.00 0.00 2.97
2033 2935 5.105106 TGGATCAAGTTATTCCACGAAGCTA 60.105 40.000 0.00 0.00 34.65 3.32
2034 2936 4.192317 GGATCAAGTTATTCCACGAAGCT 58.808 43.478 0.00 0.00 0.00 3.74
2035 2937 3.938963 TGGATCAAGTTATTCCACGAAGC 59.061 43.478 0.00 0.00 34.65 3.86
2036 2938 6.986817 AGTATGGATCAAGTTATTCCACGAAG 59.013 38.462 7.85 0.00 42.09 3.79
2037 2939 6.884832 AGTATGGATCAAGTTATTCCACGAA 58.115 36.000 7.85 0.00 42.09 3.85
2038 2940 6.479972 AGTATGGATCAAGTTATTCCACGA 57.520 37.500 7.85 0.00 42.09 4.35
2039 2941 6.511767 GCAAGTATGGATCAAGTTATTCCACG 60.512 42.308 7.85 0.00 42.09 4.94
2040 2942 6.511767 CGCAAGTATGGATCAAGTTATTCCAC 60.512 42.308 7.85 0.00 42.09 4.02
2041 2943 5.527214 CGCAAGTATGGATCAAGTTATTCCA 59.473 40.000 8.07 8.07 43.37 3.53
2042 2944 5.758296 TCGCAAGTATGGATCAAGTTATTCC 59.242 40.000 0.00 0.00 39.48 3.01
2043 2945 6.844696 TCGCAAGTATGGATCAAGTTATTC 57.155 37.500 0.00 0.00 39.48 1.75
2046 2948 9.990360 TTTATATCGCAAGTATGGATCAAGTTA 57.010 29.630 0.00 0.00 39.48 2.24
2047 2949 8.902540 TTTATATCGCAAGTATGGATCAAGTT 57.097 30.769 0.00 0.00 39.48 2.66
2048 2950 8.902540 TTTTATATCGCAAGTATGGATCAAGT 57.097 30.769 0.00 0.00 39.48 3.16
2075 2977 9.787532 CACGTATGGATCAAGTTATTTTGATTT 57.212 29.630 3.09 0.00 45.30 2.17
2076 2978 7.915397 GCACGTATGGATCAAGTTATTTTGATT 59.085 33.333 3.09 0.00 45.30 2.57
2078 2980 6.372937 TGCACGTATGGATCAAGTTATTTTGA 59.627 34.615 0.00 0.00 41.00 2.69
2079 2981 6.468956 GTGCACGTATGGATCAAGTTATTTTG 59.531 38.462 0.00 0.00 0.00 2.44
2080 2982 6.150307 TGTGCACGTATGGATCAAGTTATTTT 59.850 34.615 13.13 0.00 0.00 1.82
2081 2983 5.645929 TGTGCACGTATGGATCAAGTTATTT 59.354 36.000 13.13 0.00 0.00 1.40
2082 2984 5.182487 TGTGCACGTATGGATCAAGTTATT 58.818 37.500 13.13 0.00 0.00 1.40
2083 2985 4.765273 TGTGCACGTATGGATCAAGTTAT 58.235 39.130 13.13 0.00 0.00 1.89
2084 2986 4.180817 CTGTGCACGTATGGATCAAGTTA 58.819 43.478 13.13 0.00 0.00 2.24
2085 2987 3.002791 CTGTGCACGTATGGATCAAGTT 58.997 45.455 13.13 0.00 0.00 2.66
2086 2988 2.621338 CTGTGCACGTATGGATCAAGT 58.379 47.619 13.13 0.00 0.00 3.16
2087 2989 1.328680 GCTGTGCACGTATGGATCAAG 59.671 52.381 13.13 0.52 0.00 3.02
2088 2990 1.066215 AGCTGTGCACGTATGGATCAA 60.066 47.619 13.13 0.00 0.00 2.57
2089 2991 0.536724 AGCTGTGCACGTATGGATCA 59.463 50.000 13.13 0.00 0.00 2.92
2090 2992 2.398498 CTAGCTGTGCACGTATGGATC 58.602 52.381 13.13 0.00 0.00 3.36
2091 2993 1.539065 GCTAGCTGTGCACGTATGGAT 60.539 52.381 13.13 1.23 0.00 3.41
2092 2994 0.179111 GCTAGCTGTGCACGTATGGA 60.179 55.000 13.13 0.00 0.00 3.41
2093 2995 0.460109 TGCTAGCTGTGCACGTATGG 60.460 55.000 17.23 3.20 35.31 2.74
2094 2996 3.049227 TGCTAGCTGTGCACGTATG 57.951 52.632 17.23 3.53 35.31 2.39
2100 3002 1.603802 GAGTTTTGTGCTAGCTGTGCA 59.396 47.619 17.23 11.40 38.19 4.57
2101 3003 1.876156 AGAGTTTTGTGCTAGCTGTGC 59.124 47.619 17.23 0.77 0.00 4.57
2102 3004 2.481952 GGAGAGTTTTGTGCTAGCTGTG 59.518 50.000 17.23 0.00 0.00 3.66
2103 3005 2.104792 TGGAGAGTTTTGTGCTAGCTGT 59.895 45.455 17.23 0.00 0.00 4.40
2104 3006 2.771089 TGGAGAGTTTTGTGCTAGCTG 58.229 47.619 17.23 0.00 0.00 4.24
2105 3007 3.710209 ATGGAGAGTTTTGTGCTAGCT 57.290 42.857 17.23 0.00 0.00 3.32
2106 3008 5.631992 GTTTATGGAGAGTTTTGTGCTAGC 58.368 41.667 8.10 8.10 0.00 3.42
2107 3009 5.637810 TCGTTTATGGAGAGTTTTGTGCTAG 59.362 40.000 0.00 0.00 0.00 3.42
2108 3010 5.543714 TCGTTTATGGAGAGTTTTGTGCTA 58.456 37.500 0.00 0.00 0.00 3.49
2109 3011 4.385825 TCGTTTATGGAGAGTTTTGTGCT 58.614 39.130 0.00 0.00 0.00 4.40
2110 3012 4.742438 TCGTTTATGGAGAGTTTTGTGC 57.258 40.909 0.00 0.00 0.00 4.57
2111 3013 6.314784 GGAATCGTTTATGGAGAGTTTTGTG 58.685 40.000 0.00 0.00 0.00 3.33
2112 3014 5.414765 GGGAATCGTTTATGGAGAGTTTTGT 59.585 40.000 0.00 0.00 0.00 2.83
2113 3015 5.648092 AGGGAATCGTTTATGGAGAGTTTTG 59.352 40.000 0.00 0.00 0.00 2.44
2114 3016 5.816682 AGGGAATCGTTTATGGAGAGTTTT 58.183 37.500 0.00 0.00 0.00 2.43
2115 3017 5.437191 AGGGAATCGTTTATGGAGAGTTT 57.563 39.130 0.00 0.00 0.00 2.66
2116 3018 5.186198 CAAGGGAATCGTTTATGGAGAGTT 58.814 41.667 0.00 0.00 0.00 3.01
2117 3019 4.384208 CCAAGGGAATCGTTTATGGAGAGT 60.384 45.833 0.00 0.00 0.00 3.24
2118 3020 4.130118 CCAAGGGAATCGTTTATGGAGAG 58.870 47.826 0.00 0.00 0.00 3.20
2119 3021 3.118038 CCCAAGGGAATCGTTTATGGAGA 60.118 47.826 0.00 0.00 37.50 3.71
2120 3022 3.214328 CCCAAGGGAATCGTTTATGGAG 58.786 50.000 0.00 0.00 37.50 3.86
2121 3023 2.685522 GCCCAAGGGAATCGTTTATGGA 60.686 50.000 9.92 0.00 37.50 3.41
2122 3024 1.681264 GCCCAAGGGAATCGTTTATGG 59.319 52.381 9.92 0.00 37.50 2.74
2123 3025 2.358898 CAGCCCAAGGGAATCGTTTATG 59.641 50.000 9.92 0.00 37.50 1.90
2124 3026 2.654863 CAGCCCAAGGGAATCGTTTAT 58.345 47.619 9.92 0.00 37.50 1.40
2125 3027 1.953311 GCAGCCCAAGGGAATCGTTTA 60.953 52.381 9.92 0.00 37.50 2.01
2126 3028 1.250840 GCAGCCCAAGGGAATCGTTT 61.251 55.000 9.92 0.00 37.50 3.60
2127 3029 1.678970 GCAGCCCAAGGGAATCGTT 60.679 57.895 9.92 0.00 37.50 3.85
2128 3030 2.044946 GCAGCCCAAGGGAATCGT 60.045 61.111 9.92 0.00 37.50 3.73
2129 3031 1.379044 AAGCAGCCCAAGGGAATCG 60.379 57.895 9.92 0.00 37.50 3.34
2130 3032 0.033699 AGAAGCAGCCCAAGGGAATC 60.034 55.000 9.92 0.00 37.50 2.52
2131 3033 1.064389 GTAGAAGCAGCCCAAGGGAAT 60.064 52.381 9.92 0.00 37.50 3.01
2132 3034 0.328258 GTAGAAGCAGCCCAAGGGAA 59.672 55.000 9.92 0.00 37.50 3.97
2133 3035 0.547712 AGTAGAAGCAGCCCAAGGGA 60.548 55.000 9.92 0.00 37.50 4.20
2134 3036 0.393537 CAGTAGAAGCAGCCCAAGGG 60.394 60.000 0.00 0.00 38.57 3.95
2135 3037 0.326264 ACAGTAGAAGCAGCCCAAGG 59.674 55.000 0.00 0.00 0.00 3.61
2136 3038 2.191128 AACAGTAGAAGCAGCCCAAG 57.809 50.000 0.00 0.00 0.00 3.61
2137 3039 2.229792 CAAACAGTAGAAGCAGCCCAA 58.770 47.619 0.00 0.00 0.00 4.12
2138 3040 1.142870 ACAAACAGTAGAAGCAGCCCA 59.857 47.619 0.00 0.00 0.00 5.36
2139 3041 1.897560 ACAAACAGTAGAAGCAGCCC 58.102 50.000 0.00 0.00 0.00 5.19
2140 3042 3.120165 GCTTACAAACAGTAGAAGCAGCC 60.120 47.826 0.00 0.00 40.14 4.85
2141 3043 3.748568 AGCTTACAAACAGTAGAAGCAGC 59.251 43.478 7.58 0.00 41.94 5.25
2142 3044 5.062809 GCTAGCTTACAAACAGTAGAAGCAG 59.937 44.000 7.70 4.50 41.94 4.24
2143 3045 4.929808 GCTAGCTTACAAACAGTAGAAGCA 59.070 41.667 7.70 0.00 41.94 3.91
2144 3046 5.172205 AGCTAGCTTACAAACAGTAGAAGC 58.828 41.667 12.68 0.00 40.52 3.86
2145 3047 6.401581 GCAAGCTAGCTTACAAACAGTAGAAG 60.402 42.308 28.87 12.66 34.50 2.85
2146 3048 5.408604 GCAAGCTAGCTTACAAACAGTAGAA 59.591 40.000 28.87 0.00 34.50 2.10
2147 3049 4.929808 GCAAGCTAGCTTACAAACAGTAGA 59.070 41.667 28.87 0.00 34.50 2.59
2148 3050 4.932200 AGCAAGCTAGCTTACAAACAGTAG 59.068 41.667 28.87 13.76 43.70 2.57
2149 3051 4.894784 AGCAAGCTAGCTTACAAACAGTA 58.105 39.130 28.87 0.00 43.70 2.74
2150 3052 3.744660 AGCAAGCTAGCTTACAAACAGT 58.255 40.909 28.87 4.39 43.70 3.55
2151 3053 3.999663 AGAGCAAGCTAGCTTACAAACAG 59.000 43.478 28.87 15.86 46.75 3.16
2152 3054 4.008074 AGAGCAAGCTAGCTTACAAACA 57.992 40.909 28.87 0.00 46.75 2.83
2153 3055 4.568760 CCTAGAGCAAGCTAGCTTACAAAC 59.431 45.833 28.87 17.61 46.75 2.93
2154 3056 4.466370 TCCTAGAGCAAGCTAGCTTACAAA 59.534 41.667 28.87 12.06 46.75 2.83
2155 3057 4.023980 TCCTAGAGCAAGCTAGCTTACAA 58.976 43.478 28.87 12.39 46.75 2.41
2156 3058 3.381908 GTCCTAGAGCAAGCTAGCTTACA 59.618 47.826 28.87 7.77 46.75 2.41
2157 3059 3.634910 AGTCCTAGAGCAAGCTAGCTTAC 59.365 47.826 28.87 23.49 46.75 2.34
2158 3060 3.886505 GAGTCCTAGAGCAAGCTAGCTTA 59.113 47.826 28.87 12.84 46.75 3.09
2159 3061 2.693074 GAGTCCTAGAGCAAGCTAGCTT 59.307 50.000 24.42 24.42 46.75 3.74
2161 3063 2.028130 TGAGTCCTAGAGCAAGCTAGC 58.972 52.381 6.62 6.62 37.20 3.42
2162 3064 4.584325 AGATTGAGTCCTAGAGCAAGCTAG 59.416 45.833 0.00 0.00 35.49 3.42
2163 3065 4.340666 CAGATTGAGTCCTAGAGCAAGCTA 59.659 45.833 0.00 0.00 35.10 3.32
2164 3066 3.132646 CAGATTGAGTCCTAGAGCAAGCT 59.867 47.826 0.00 0.00 37.46 3.74
2165 3067 3.131933 TCAGATTGAGTCCTAGAGCAAGC 59.868 47.826 0.00 0.00 0.00 4.01
2166 3068 4.681744 GTCAGATTGAGTCCTAGAGCAAG 58.318 47.826 0.00 0.00 0.00 4.01
2167 3069 3.129462 CGTCAGATTGAGTCCTAGAGCAA 59.871 47.826 0.00 0.00 0.00 3.91
2168 3070 2.685388 CGTCAGATTGAGTCCTAGAGCA 59.315 50.000 0.00 0.00 0.00 4.26
2169 3071 2.685897 ACGTCAGATTGAGTCCTAGAGC 59.314 50.000 0.00 0.00 0.00 4.09
2170 3072 3.942115 TCACGTCAGATTGAGTCCTAGAG 59.058 47.826 0.00 0.00 0.00 2.43
2171 3073 3.951663 TCACGTCAGATTGAGTCCTAGA 58.048 45.455 0.00 0.00 0.00 2.43
2172 3074 4.909696 ATCACGTCAGATTGAGTCCTAG 57.090 45.455 0.00 0.00 0.00 3.02
2181 3083 4.396166 GGGTTTGATCAATCACGTCAGATT 59.604 41.667 9.40 0.00 38.72 2.40
2182 3084 3.941483 GGGTTTGATCAATCACGTCAGAT 59.059 43.478 9.40 0.00 36.36 2.90
2183 3085 3.244387 TGGGTTTGATCAATCACGTCAGA 60.244 43.478 9.40 0.00 36.36 3.27
2184 3086 3.073678 TGGGTTTGATCAATCACGTCAG 58.926 45.455 9.40 0.00 36.36 3.51
2185 3087 3.133141 TGGGTTTGATCAATCACGTCA 57.867 42.857 9.40 5.14 36.36 4.35
2186 3088 3.242413 CGATGGGTTTGATCAATCACGTC 60.242 47.826 22.94 22.94 36.36 4.34
2187 3089 2.677836 CGATGGGTTTGATCAATCACGT 59.322 45.455 12.34 12.34 36.36 4.49
2188 3090 2.677836 ACGATGGGTTTGATCAATCACG 59.322 45.455 9.40 13.69 36.36 4.35
2189 3091 5.811399 TTACGATGGGTTTGATCAATCAC 57.189 39.130 9.40 10.43 36.36 3.06
2190 3092 8.690203 ATATTTACGATGGGTTTGATCAATCA 57.310 30.769 9.40 8.81 34.44 2.57
2191 3093 9.965824 AAATATTTACGATGGGTTTGATCAATC 57.034 29.630 9.40 8.51 0.00 2.67
2193 3095 9.579768 CAAAATATTTACGATGGGTTTGATCAA 57.420 29.630 3.38 3.38 0.00 2.57
2194 3096 8.961634 TCAAAATATTTACGATGGGTTTGATCA 58.038 29.630 0.01 0.00 30.90 2.92
2195 3097 9.965824 ATCAAAATATTTACGATGGGTTTGATC 57.034 29.630 0.01 0.00 39.16 2.92
2201 3103 9.179909 TGTTGTATCAAAATATTTACGATGGGT 57.820 29.630 17.34 3.84 0.00 4.51
2212 3114 9.926158 TGAAGTGCAATTGTTGTATCAAAATAT 57.074 25.926 3.09 0.00 0.00 1.28
2213 3115 9.409312 CTGAAGTGCAATTGTTGTATCAAAATA 57.591 29.630 3.09 0.00 0.00 1.40
2214 3116 8.143193 TCTGAAGTGCAATTGTTGTATCAAAAT 58.857 29.630 3.09 0.00 0.00 1.82
2215 3117 7.434897 GTCTGAAGTGCAATTGTTGTATCAAAA 59.565 33.333 3.09 0.00 0.00 2.44
2216 3118 6.917477 GTCTGAAGTGCAATTGTTGTATCAAA 59.083 34.615 3.09 0.00 0.00 2.69
2217 3119 6.262944 AGTCTGAAGTGCAATTGTTGTATCAA 59.737 34.615 3.09 0.00 0.00 2.57
2218 3120 5.764686 AGTCTGAAGTGCAATTGTTGTATCA 59.235 36.000 3.09 5.33 0.00 2.15
2219 3121 6.073058 TGAGTCTGAAGTGCAATTGTTGTATC 60.073 38.462 3.09 0.00 0.00 2.24
2220 3122 5.764686 TGAGTCTGAAGTGCAATTGTTGTAT 59.235 36.000 3.09 0.00 0.00 2.29
2221 3123 5.122519 TGAGTCTGAAGTGCAATTGTTGTA 58.877 37.500 3.09 0.00 0.00 2.41
2222 3124 3.947196 TGAGTCTGAAGTGCAATTGTTGT 59.053 39.130 3.09 0.00 0.00 3.32
2223 3125 4.274214 TCTGAGTCTGAAGTGCAATTGTTG 59.726 41.667 3.09 0.00 0.00 3.33
2224 3126 4.454678 TCTGAGTCTGAAGTGCAATTGTT 58.545 39.130 3.09 0.00 0.00 2.83
2225 3127 4.063689 CTCTGAGTCTGAAGTGCAATTGT 58.936 43.478 3.09 0.00 0.00 2.71
2226 3128 3.120269 GCTCTGAGTCTGAAGTGCAATTG 60.120 47.826 3.09 0.00 34.02 2.32
2227 3129 3.072944 GCTCTGAGTCTGAAGTGCAATT 58.927 45.455 0.00 0.00 34.02 2.32
2228 3130 2.038164 TGCTCTGAGTCTGAAGTGCAAT 59.962 45.455 6.53 0.00 39.29 3.56
2229 3131 1.413812 TGCTCTGAGTCTGAAGTGCAA 59.586 47.619 6.53 0.00 39.29 4.08
2230 3132 1.043022 TGCTCTGAGTCTGAAGTGCA 58.957 50.000 6.53 7.93 39.77 4.57
2231 3133 2.094078 AGATGCTCTGAGTCTGAAGTGC 60.094 50.000 6.53 2.53 34.35 4.40
2232 3134 3.872511 AGATGCTCTGAGTCTGAAGTG 57.127 47.619 6.53 0.00 0.00 3.16
2233 3135 4.339748 TGTAGATGCTCTGAGTCTGAAGT 58.660 43.478 6.53 0.00 0.00 3.01
2234 3136 4.979943 TGTAGATGCTCTGAGTCTGAAG 57.020 45.455 6.53 0.00 0.00 3.02
2235 3137 4.769488 AGTTGTAGATGCTCTGAGTCTGAA 59.231 41.667 6.53 0.00 0.00 3.02
2236 3138 4.157472 CAGTTGTAGATGCTCTGAGTCTGA 59.843 45.833 6.53 0.00 0.00 3.27
2237 3139 4.082300 ACAGTTGTAGATGCTCTGAGTCTG 60.082 45.833 6.53 0.00 0.00 3.51
2238 3140 4.082300 CACAGTTGTAGATGCTCTGAGTCT 60.082 45.833 6.53 4.90 0.00 3.24
2239 3141 4.082517 TCACAGTTGTAGATGCTCTGAGTC 60.083 45.833 6.53 0.00 0.00 3.36
2240 3142 3.829026 TCACAGTTGTAGATGCTCTGAGT 59.171 43.478 6.53 0.00 0.00 3.41
2241 3143 4.446994 TCACAGTTGTAGATGCTCTGAG 57.553 45.455 0.00 0.00 0.00 3.35
2242 3144 5.411831 AATCACAGTTGTAGATGCTCTGA 57.588 39.130 0.00 0.00 0.00 3.27
2243 3145 6.148315 TGAAAATCACAGTTGTAGATGCTCTG 59.852 38.462 0.00 0.00 0.00 3.35
2244 3146 6.233434 TGAAAATCACAGTTGTAGATGCTCT 58.767 36.000 0.00 0.00 0.00 4.09
2245 3147 6.486253 TGAAAATCACAGTTGTAGATGCTC 57.514 37.500 0.00 0.00 0.00 4.26
2246 3148 8.743085 ATATGAAAATCACAGTTGTAGATGCT 57.257 30.769 0.00 0.00 0.00 3.79
2247 3149 8.615211 TGATATGAAAATCACAGTTGTAGATGC 58.385 33.333 0.00 0.00 30.92 3.91
2250 3152 9.371136 GTCTGATATGAAAATCACAGTTGTAGA 57.629 33.333 0.00 0.00 32.51 2.59
2251 3153 8.607459 GGTCTGATATGAAAATCACAGTTGTAG 58.393 37.037 0.00 0.00 32.51 2.74
2252 3154 7.552687 GGGTCTGATATGAAAATCACAGTTGTA 59.447 37.037 0.00 0.00 32.51 2.41
2253 3155 6.375455 GGGTCTGATATGAAAATCACAGTTGT 59.625 38.462 0.00 0.00 32.51 3.32
2254 3156 6.183360 GGGGTCTGATATGAAAATCACAGTTG 60.183 42.308 0.00 0.00 32.51 3.16
2255 3157 5.888161 GGGGTCTGATATGAAAATCACAGTT 59.112 40.000 0.00 0.00 32.51 3.16
2256 3158 5.440610 GGGGTCTGATATGAAAATCACAGT 58.559 41.667 0.00 0.00 32.51 3.55
2257 3159 4.823989 GGGGGTCTGATATGAAAATCACAG 59.176 45.833 0.00 0.00 32.51 3.66
2258 3160 4.478317 AGGGGGTCTGATATGAAAATCACA 59.522 41.667 0.00 0.00 32.51 3.58
2259 3161 5.053978 AGGGGGTCTGATATGAAAATCAC 57.946 43.478 0.00 0.00 32.51 3.06
2260 3162 5.669904 TGTAGGGGGTCTGATATGAAAATCA 59.330 40.000 0.00 0.00 34.72 2.57
2261 3163 5.998363 GTGTAGGGGGTCTGATATGAAAATC 59.002 44.000 0.00 0.00 0.00 2.17
2262 3164 5.454755 CGTGTAGGGGGTCTGATATGAAAAT 60.455 44.000 0.00 0.00 0.00 1.82
2263 3165 4.141801 CGTGTAGGGGGTCTGATATGAAAA 60.142 45.833 0.00 0.00 0.00 2.29
2264 3166 3.386726 CGTGTAGGGGGTCTGATATGAAA 59.613 47.826 0.00 0.00 0.00 2.69
2265 3167 2.963101 CGTGTAGGGGGTCTGATATGAA 59.037 50.000 0.00 0.00 0.00 2.57
2266 3168 2.091499 ACGTGTAGGGGGTCTGATATGA 60.091 50.000 0.00 0.00 0.00 2.15
2267 3169 2.296471 GACGTGTAGGGGGTCTGATATG 59.704 54.545 0.00 0.00 0.00 1.78
2268 3170 2.595238 GACGTGTAGGGGGTCTGATAT 58.405 52.381 0.00 0.00 0.00 1.63
2269 3171 1.410648 GGACGTGTAGGGGGTCTGATA 60.411 57.143 0.00 0.00 0.00 2.15
2270 3172 0.686769 GGACGTGTAGGGGGTCTGAT 60.687 60.000 0.00 0.00 0.00 2.90
2271 3173 1.304713 GGACGTGTAGGGGGTCTGA 60.305 63.158 0.00 0.00 0.00 3.27
2272 3174 2.707849 CGGACGTGTAGGGGGTCTG 61.708 68.421 0.00 0.00 0.00 3.51
2273 3175 2.362120 CGGACGTGTAGGGGGTCT 60.362 66.667 0.00 0.00 0.00 3.85
2274 3176 4.139234 GCGGACGTGTAGGGGGTC 62.139 72.222 0.00 0.00 0.00 4.46
2278 3180 4.487412 GTCCGCGGACGTGTAGGG 62.487 72.222 39.77 3.67 37.70 3.53
2298 3200 4.477975 CCTCTCACGCGTCCGGAC 62.478 72.222 25.28 25.28 39.22 4.79
2299 3201 4.710167 TCCTCTCACGCGTCCGGA 62.710 66.667 9.86 10.12 39.22 5.14
2300 3202 4.477975 GTCCTCTCACGCGTCCGG 62.478 72.222 9.86 7.59 39.22 5.14
2301 3203 3.669036 CTGTCCTCTCACGCGTCCG 62.669 68.421 9.86 2.76 41.14 4.79
2302 3204 2.179517 CTGTCCTCTCACGCGTCC 59.820 66.667 9.86 0.00 0.00 4.79
2303 3205 1.442857 CACTGTCCTCTCACGCGTC 60.443 63.158 9.86 0.00 0.00 5.19
2304 3206 1.897137 TCACTGTCCTCTCACGCGT 60.897 57.895 5.58 5.58 0.00 6.01
2305 3207 1.442857 GTCACTGTCCTCTCACGCG 60.443 63.158 3.53 3.53 0.00 6.01
2306 3208 1.080434 GGTCACTGTCCTCTCACGC 60.080 63.158 0.00 0.00 0.00 5.34
2307 3209 1.210413 CGGTCACTGTCCTCTCACG 59.790 63.158 0.00 0.00 0.00 4.35
2308 3210 1.179814 ACCGGTCACTGTCCTCTCAC 61.180 60.000 0.00 0.00 0.00 3.51
2309 3211 0.894184 GACCGGTCACTGTCCTCTCA 60.894 60.000 29.75 0.00 0.00 3.27
2310 3212 0.894184 TGACCGGTCACTGTCCTCTC 60.894 60.000 33.23 3.65 34.14 3.20
2311 3213 1.153061 TGACCGGTCACTGTCCTCT 59.847 57.895 33.23 0.00 34.14 3.69
2312 3214 3.773370 TGACCGGTCACTGTCCTC 58.227 61.111 33.23 5.07 34.14 3.71
2320 3222 3.558321 CCAAAATAAGGAGTGACCGGTCA 60.558 47.826 33.23 33.23 44.74 4.02
2321 3223 3.007635 CCAAAATAAGGAGTGACCGGTC 58.992 50.000 28.17 28.17 44.74 4.79
2322 3224 2.374170 ACCAAAATAAGGAGTGACCGGT 59.626 45.455 6.92 6.92 44.74 5.28
2323 3225 2.747446 CACCAAAATAAGGAGTGACCGG 59.253 50.000 0.00 0.00 44.74 5.28
2324 3226 2.161609 GCACCAAAATAAGGAGTGACCG 59.838 50.000 0.00 0.00 44.74 4.79
2325 3227 3.153919 TGCACCAAAATAAGGAGTGACC 58.846 45.455 0.00 0.00 39.35 4.02
2326 3228 4.142381 GGATGCACCAAAATAAGGAGTGAC 60.142 45.833 0.00 0.00 38.79 3.67
2327 3229 4.016444 GGATGCACCAAAATAAGGAGTGA 58.984 43.478 0.00 0.00 38.79 3.41
2328 3230 3.181497 CGGATGCACCAAAATAAGGAGTG 60.181 47.826 0.00 0.00 38.90 3.51
2329 3231 3.016736 CGGATGCACCAAAATAAGGAGT 58.983 45.455 0.00 0.00 38.90 3.85
2330 3232 2.223572 GCGGATGCACCAAAATAAGGAG 60.224 50.000 0.00 0.00 42.15 3.69
2331 3233 1.748493 GCGGATGCACCAAAATAAGGA 59.252 47.619 0.00 0.00 42.15 3.36
2332 3234 2.208326 GCGGATGCACCAAAATAAGG 57.792 50.000 0.00 0.00 42.15 2.69
2344 3246 0.676782 AGTTACAAGGGTGCGGATGC 60.677 55.000 0.00 0.00 43.20 3.91
2345 3247 1.338674 TGAGTTACAAGGGTGCGGATG 60.339 52.381 0.00 0.00 0.00 3.51
2346 3248 0.981183 TGAGTTACAAGGGTGCGGAT 59.019 50.000 0.00 0.00 0.00 4.18
2347 3249 0.759959 TTGAGTTACAAGGGTGCGGA 59.240 50.000 0.00 0.00 34.20 5.54
2348 3250 1.600023 TTTGAGTTACAAGGGTGCGG 58.400 50.000 0.00 0.00 39.77 5.69
2349 3251 2.161609 GGATTTGAGTTACAAGGGTGCG 59.838 50.000 0.00 0.00 39.77 5.34
2350 3252 2.161609 CGGATTTGAGTTACAAGGGTGC 59.838 50.000 0.00 0.00 39.77 5.01
2351 3253 3.670625 TCGGATTTGAGTTACAAGGGTG 58.329 45.455 0.00 0.00 39.77 4.61
2352 3254 4.514401 GATCGGATTTGAGTTACAAGGGT 58.486 43.478 0.00 0.00 39.77 4.34
2353 3255 3.877508 GGATCGGATTTGAGTTACAAGGG 59.122 47.826 0.00 0.00 39.77 3.95
2354 3256 4.513442 TGGATCGGATTTGAGTTACAAGG 58.487 43.478 0.00 0.00 39.77 3.61
2355 3257 5.817296 TCATGGATCGGATTTGAGTTACAAG 59.183 40.000 0.00 0.00 39.77 3.16
2356 3258 5.739959 TCATGGATCGGATTTGAGTTACAA 58.260 37.500 0.00 0.00 36.65 2.41
2357 3259 5.351948 TCATGGATCGGATTTGAGTTACA 57.648 39.130 0.00 0.00 0.00 2.41
2358 3260 5.334414 GCATCATGGATCGGATTTGAGTTAC 60.334 44.000 0.00 0.00 0.00 2.50
2359 3261 4.756642 GCATCATGGATCGGATTTGAGTTA 59.243 41.667 0.00 0.00 0.00 2.24
2360 3262 3.567164 GCATCATGGATCGGATTTGAGTT 59.433 43.478 0.00 0.00 0.00 3.01
2361 3263 3.144506 GCATCATGGATCGGATTTGAGT 58.855 45.455 0.00 0.00 0.00 3.41
2362 3264 2.159037 CGCATCATGGATCGGATTTGAG 59.841 50.000 0.00 0.00 0.00 3.02
2363 3265 2.145536 CGCATCATGGATCGGATTTGA 58.854 47.619 0.00 0.00 0.00 2.69
2364 3266 1.400629 GCGCATCATGGATCGGATTTG 60.401 52.381 0.30 0.00 0.00 2.32
2365 3267 0.877071 GCGCATCATGGATCGGATTT 59.123 50.000 0.30 0.00 0.00 2.17
2366 3268 0.957395 GGCGCATCATGGATCGGATT 60.957 55.000 10.83 0.00 0.00 3.01
2367 3269 1.376424 GGCGCATCATGGATCGGAT 60.376 57.895 10.83 0.00 0.00 4.18
2368 3270 2.031012 GGCGCATCATGGATCGGA 59.969 61.111 10.83 0.00 0.00 4.55
2369 3271 3.417224 CGGCGCATCATGGATCGG 61.417 66.667 10.83 0.00 0.00 4.18
2370 3272 4.081030 GCGGCGCATCATGGATCG 62.081 66.667 29.21 0.25 0.00 3.69
2371 3273 3.730761 GGCGGCGCATCATGGATC 61.731 66.667 34.36 8.86 0.00 3.36
2393 3295 4.838152 CCCTGGTGATGGGCGACG 62.838 72.222 0.00 0.00 37.99 5.12
2399 3301 4.864334 GCGAGGCCCTGGTGATGG 62.864 72.222 0.00 0.00 0.00 3.51
2412 3314 2.805353 CGAGTGACAACCCGCGAG 60.805 66.667 8.23 0.00 0.00 5.03
2417 3319 4.980805 TGGCGCGAGTGACAACCC 62.981 66.667 12.10 0.00 0.00 4.11
2418 3320 3.712881 GTGGCGCGAGTGACAACC 61.713 66.667 12.10 0.00 0.00 3.77
2419 3321 4.059459 CGTGGCGCGAGTGACAAC 62.059 66.667 16.70 0.00 44.77 3.32
2451 3353 4.176851 GTCGAGGACGCCCGAGTC 62.177 72.222 0.00 0.00 40.25 3.36
2452 3354 4.719106 AGTCGAGGACGCCCGAGT 62.719 66.667 0.00 9.13 37.67 4.18
2453 3355 4.180946 CAGTCGAGGACGCCCGAG 62.181 72.222 0.00 0.00 37.67 4.63
2459 3361 3.691342 TTGGGCCAGTCGAGGACG 61.691 66.667 6.23 0.00 37.66 4.79
2460 3362 2.047179 GTTGGGCCAGTCGAGGAC 60.047 66.667 6.23 0.00 35.24 3.85
2461 3363 3.691342 CGTTGGGCCAGTCGAGGA 61.691 66.667 22.44 0.00 0.00 3.71
2462 3364 3.934391 GACGTTGGGCCAGTCGAGG 62.934 68.421 29.70 15.11 0.00 4.63
2463 3365 2.432628 GACGTTGGGCCAGTCGAG 60.433 66.667 29.70 14.63 0.00 4.04
2466 3368 2.737376 GTCGACGTTGGGCCAGTC 60.737 66.667 14.29 14.29 0.00 3.51
2467 3369 4.657824 CGTCGACGTTGGGCCAGT 62.658 66.667 29.08 1.15 34.11 4.00
2468 3370 4.351938 TCGTCGACGTTGGGCCAG 62.352 66.667 34.40 6.41 40.80 4.85
2469 3371 4.351938 CTCGTCGACGTTGGGCCA 62.352 66.667 34.40 14.87 40.80 5.36
2473 3375 4.351938 TGCCCTCGTCGACGTTGG 62.352 66.667 34.40 32.19 40.80 3.77
2474 3376 3.103911 GTGCCCTCGTCGACGTTG 61.104 66.667 34.40 26.56 40.80 4.10
2475 3377 3.141522 TTGTGCCCTCGTCGACGTT 62.142 57.895 34.40 0.00 40.80 3.99
2476 3378 3.553437 CTTGTGCCCTCGTCGACGT 62.553 63.158 34.40 0.00 40.80 4.34
2477 3379 2.805353 CTTGTGCCCTCGTCGACG 60.805 66.667 31.30 31.30 41.45 5.12
2478 3380 3.112709 GCTTGTGCCCTCGTCGAC 61.113 66.667 5.18 5.18 0.00 4.20
2479 3381 3.611674 TGCTTGTGCCCTCGTCGA 61.612 61.111 0.00 0.00 38.71 4.20
2480 3382 3.414700 GTGCTTGTGCCCTCGTCG 61.415 66.667 0.00 0.00 38.71 5.12
2481 3383 3.050275 GGTGCTTGTGCCCTCGTC 61.050 66.667 0.00 0.00 38.71 4.20
2482 3384 3.414136 TTGGTGCTTGTGCCCTCGT 62.414 57.895 0.00 0.00 38.71 4.18
2483 3385 2.594303 TTGGTGCTTGTGCCCTCG 60.594 61.111 0.00 0.00 38.71 4.63
2484 3386 2.924105 GCTTGGTGCTTGTGCCCTC 61.924 63.158 0.00 0.00 38.71 4.30
2485 3387 2.914097 GCTTGGTGCTTGTGCCCT 60.914 61.111 0.00 0.00 38.71 5.19
2486 3388 4.347453 CGCTTGGTGCTTGTGCCC 62.347 66.667 0.00 0.00 40.11 5.36
2487 3389 4.347453 CCGCTTGGTGCTTGTGCC 62.347 66.667 0.00 0.00 40.11 5.01
2488 3390 3.595758 ACCGCTTGGTGCTTGTGC 61.596 61.111 0.00 0.00 46.92 4.57
2497 3399 1.961277 GTCCACTGACACCGCTTGG 60.961 63.158 0.00 0.00 41.37 3.61
2498 3400 1.224069 CTGTCCACTGACACCGCTTG 61.224 60.000 0.00 0.00 46.40 4.01
2499 3401 1.069765 CTGTCCACTGACACCGCTT 59.930 57.895 0.00 0.00 46.40 4.68
2500 3402 2.737180 CTGTCCACTGACACCGCT 59.263 61.111 0.00 0.00 46.40 5.52
2501 3403 3.044305 GCTGTCCACTGACACCGC 61.044 66.667 0.00 0.00 46.40 5.68
2502 3404 2.734723 CGCTGTCCACTGACACCG 60.735 66.667 0.00 0.00 46.40 4.94
2503 3405 0.666577 GTACGCTGTCCACTGACACC 60.667 60.000 0.00 0.00 46.40 4.16
2504 3406 0.666577 GGTACGCTGTCCACTGACAC 60.667 60.000 0.00 0.00 46.40 3.67
2506 3408 1.965219 AGGTACGCTGTCCACTGAC 59.035 57.895 0.00 0.00 42.12 3.51
2507 3409 4.513777 AGGTACGCTGTCCACTGA 57.486 55.556 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.