Multiple sequence alignment - TraesCS7D01G495100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G495100 chr7D 100.000 4126 0 0 1000 5125 602286623 602290748 0.000000e+00 7620.0
1 TraesCS7D01G495100 chr7D 100.000 438 0 0 5442 5879 602291065 602291502 0.000000e+00 809.0
2 TraesCS7D01G495100 chr7D 80.088 1130 173 35 1223 2326 549794676 549795779 0.000000e+00 793.0
3 TraesCS7D01G495100 chr7D 100.000 338 0 0 1 338 602285624 602285961 5.000000e-175 625.0
4 TraesCS7D01G495100 chr7D 92.164 268 16 2 5545 5810 602290292 602290556 2.000000e-99 374.0
5 TraesCS7D01G495100 chr7D 92.164 268 16 2 4669 4933 602291168 602291433 2.000000e-99 374.0
6 TraesCS7D01G495100 chr7A 94.604 2057 88 6 1007 3059 694044289 694046326 0.000000e+00 3162.0
7 TraesCS7D01G495100 chr7A 79.510 1225 191 38 1132 2326 635273705 635274899 0.000000e+00 817.0
8 TraesCS7D01G495100 chr7A 83.367 499 47 16 4172 4654 694047198 694047676 4.210000e-116 429.0
9 TraesCS7D01G495100 chr7A 92.885 253 15 1 4 253 694043921 694044173 1.200000e-96 364.0
10 TraesCS7D01G495100 chr7A 87.107 318 39 2 1 317 694025160 694025476 5.600000e-95 359.0
11 TraesCS7D01G495100 chr7A 89.761 293 10 3 3154 3441 694046320 694046597 2.010000e-94 357.0
12 TraesCS7D01G495100 chr7A 78.525 461 64 11 5444 5879 694047959 694048409 2.700000e-68 270.0
13 TraesCS7D01G495100 chr7A 90.244 205 15 3 3458 3660 694046577 694046778 4.520000e-66 263.0
14 TraesCS7D01G495100 chr7A 93.506 154 7 1 3942 4092 694046918 694047071 5.930000e-55 226.0
15 TraesCS7D01G495100 chr7A 80.268 299 33 8 4669 4944 694048059 694048354 9.990000e-48 202.0
16 TraesCS7D01G495100 chr7A 97.727 44 1 0 3880 3923 694046775 694046818 6.320000e-10 76.8
17 TraesCS7D01G495100 chr7A 100.000 34 0 0 305 338 694044196 694044229 4.920000e-06 63.9
18 TraesCS7D01G495100 chrUn 93.680 2136 96 13 1000 3120 87052898 87050787 0.000000e+00 3160.0
19 TraesCS7D01G495100 chrUn 91.641 646 36 13 3461 4095 87273395 87272757 0.000000e+00 878.0
20 TraesCS7D01G495100 chrUn 91.818 440 27 5 4091 4525 87272660 87272225 6.520000e-169 604.0
21 TraesCS7D01G495100 chrUn 95.894 341 13 1 3102 3441 87273718 87273378 8.610000e-153 551.0
22 TraesCS7D01G495100 chrUn 84.892 417 34 18 3668 4073 87221637 87222035 1.540000e-105 394.0
23 TraesCS7D01G495100 chrUn 83.841 427 51 9 5444 5869 472257086 472257495 1.990000e-104 390.0
24 TraesCS7D01G495100 chrUn 86.503 326 20 6 1 314 87261834 87262147 2.620000e-88 337.0
25 TraesCS7D01G495100 chrUn 86.503 326 20 6 1 314 235077693 235078006 2.620000e-88 337.0
26 TraesCS7D01G495100 chrUn 88.199 161 13 3 4362 4520 87222233 87222389 2.800000e-43 187.0
27 TraesCS7D01G495100 chrUn 92.222 90 4 2 4572 4658 87272066 87271977 2.220000e-24 124.0
28 TraesCS7D01G495100 chr6B 85.655 962 88 17 1671 2614 718280604 718281533 0.000000e+00 966.0
29 TraesCS7D01G495100 chr6B 77.081 1658 269 68 1113 2716 718230997 718232597 0.000000e+00 854.0
30 TraesCS7D01G495100 chr6B 77.770 1408 258 36 1132 2514 716425719 716427096 0.000000e+00 815.0
31 TraesCS7D01G495100 chr6B 76.726 1246 244 33 1229 2452 718594097 718592876 0.000000e+00 652.0
32 TraesCS7D01G495100 chr6B 76.854 1119 219 25 1229 2325 717930532 717929432 3.920000e-166 595.0
33 TraesCS7D01G495100 chr6B 80.714 280 31 11 2652 2928 718281541 718281800 4.650000e-46 196.0
34 TraesCS7D01G495100 chr6B 97.368 38 1 0 4532 4569 73443674 73443711 1.370000e-06 65.8
35 TraesCS7D01G495100 chr6B 96.875 32 1 0 4542 4573 286691397 286691366 3.000000e-03 54.7
36 TraesCS7D01G495100 chr5D 77.807 1541 232 63 1007 2502 423535429 423533954 0.000000e+00 850.0
37 TraesCS7D01G495100 chr5B 77.432 1542 234 60 1006 2502 511373000 511371528 0.000000e+00 815.0
38 TraesCS7D01G495100 chr5B 97.297 37 1 0 4533 4569 576224152 576224188 4.920000e-06 63.9
39 TraesCS7D01G495100 chr5B 96.875 32 1 0 4542 4573 477498470 477498439 3.000000e-03 54.7
40 TraesCS7D01G495100 chr5A 77.536 1518 230 60 1029 2502 537125048 537123598 0.000000e+00 811.0
41 TraesCS7D01G495100 chr5A 75.556 855 145 34 1130 1952 621847466 621848288 4.330000e-96 363.0
42 TraesCS7D01G495100 chr6D 90.334 569 44 6 1868 2427 472907505 472908071 0.000000e+00 736.0
43 TraesCS7D01G495100 chr6D 82.737 475 59 13 2654 3115 472908133 472908597 9.180000e-108 401.0
44 TraesCS7D01G495100 chr6D 76.671 733 147 20 1229 1952 472931197 472931914 9.240000e-103 385.0
45 TraesCS7D01G495100 chr6D 86.408 206 25 3 3532 3736 472908702 472908905 7.670000e-54 222.0
46 TraesCS7D01G495100 chr6D 81.034 116 14 6 3932 4045 472930142 472930251 1.050000e-12 86.1
47 TraesCS7D01G495100 chr6A 74.971 875 169 26 1132 1994 616903709 616902873 2.010000e-94 357.0
48 TraesCS7D01G495100 chr3B 82.456 285 30 11 3121 3402 514008121 514007854 1.270000e-56 231.0
49 TraesCS7D01G495100 chr3B 83.163 196 26 5 3461 3652 514007853 514007661 7.830000e-39 172.0
50 TraesCS7D01G495100 chr3B 96.875 32 1 0 4542 4573 2108350 2108319 3.000000e-03 54.7
51 TraesCS7D01G495100 chr3D 83.420 193 25 6 3464 3652 394767477 394767288 7.830000e-39 172.0
52 TraesCS7D01G495100 chr4A 95.455 44 2 0 4530 4573 548540143 548540186 2.940000e-08 71.3
53 TraesCS7D01G495100 chr4A 95.455 44 2 0 4530 4573 548540753 548540796 2.940000e-08 71.3
54 TraesCS7D01G495100 chr4A 88.636 44 5 0 4530 4573 587726483 587726526 3.000000e-03 54.7
55 TraesCS7D01G495100 chr3A 95.238 42 1 1 4530 4570 706210047 706210088 1.370000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G495100 chr7D 602285624 602291502 5878 False 1960.40 7620 96.86560 1 5879 5 chr7D.!!$F2 5878
1 TraesCS7D01G495100 chr7D 549794676 549795779 1103 False 793.00 793 80.08800 1223 2326 1 chr7D.!!$F1 1103
2 TraesCS7D01G495100 chr7A 635273705 635274899 1194 False 817.00 817 79.51000 1132 2326 1 chr7A.!!$F1 1194
3 TraesCS7D01G495100 chr7A 694043921 694048409 4488 False 541.37 3162 90.08870 4 5879 10 chr7A.!!$F3 5875
4 TraesCS7D01G495100 chrUn 87050787 87052898 2111 True 3160.00 3160 93.68000 1000 3120 1 chrUn.!!$R1 2120
5 TraesCS7D01G495100 chrUn 87271977 87273718 1741 True 539.25 878 92.89375 3102 4658 4 chrUn.!!$R2 1556
6 TraesCS7D01G495100 chrUn 87221637 87222389 752 False 290.50 394 86.54550 3668 4520 2 chrUn.!!$F4 852
7 TraesCS7D01G495100 chr6B 718230997 718232597 1600 False 854.00 854 77.08100 1113 2716 1 chr6B.!!$F3 1603
8 TraesCS7D01G495100 chr6B 716425719 716427096 1377 False 815.00 815 77.77000 1132 2514 1 chr6B.!!$F2 1382
9 TraesCS7D01G495100 chr6B 718592876 718594097 1221 True 652.00 652 76.72600 1229 2452 1 chr6B.!!$R3 1223
10 TraesCS7D01G495100 chr6B 717929432 717930532 1100 True 595.00 595 76.85400 1229 2325 1 chr6B.!!$R2 1096
11 TraesCS7D01G495100 chr6B 718280604 718281800 1196 False 581.00 966 83.18450 1671 2928 2 chr6B.!!$F4 1257
12 TraesCS7D01G495100 chr5D 423533954 423535429 1475 True 850.00 850 77.80700 1007 2502 1 chr5D.!!$R1 1495
13 TraesCS7D01G495100 chr5B 511371528 511373000 1472 True 815.00 815 77.43200 1006 2502 1 chr5B.!!$R2 1496
14 TraesCS7D01G495100 chr5A 537123598 537125048 1450 True 811.00 811 77.53600 1029 2502 1 chr5A.!!$R1 1473
15 TraesCS7D01G495100 chr5A 621847466 621848288 822 False 363.00 363 75.55600 1130 1952 1 chr5A.!!$F1 822
16 TraesCS7D01G495100 chr6D 472907505 472908905 1400 False 453.00 736 86.49300 1868 3736 3 chr6D.!!$F1 1868
17 TraesCS7D01G495100 chr6D 472930142 472931914 1772 False 235.55 385 78.85250 1229 4045 2 chr6D.!!$F2 2816
18 TraesCS7D01G495100 chr6A 616902873 616903709 836 True 357.00 357 74.97100 1132 1994 1 chr6A.!!$R1 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 1.686355 ACAAAGCCCAATCAACGTGA 58.314 45.0 0.00 0.0 0.00 4.35 F
84 88 1.726853 CCCAATCAACGTGAGGACTC 58.273 55.0 0.00 0.0 0.00 3.36 F
1108 1117 0.032130 TGACCGACAGACTGAGCAAC 59.968 55.0 10.08 0.0 0.00 4.17 F
2641 2782 0.396974 TGCTTTGTGCCTTCCCTGTT 60.397 50.0 0.00 0.0 42.00 3.16 F
3097 3261 0.320683 GTTGGCTGCCACATTTTCCC 60.321 55.0 23.30 0.0 30.78 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1057 1066 0.595095 CAAGTTGAGTTGGGAGCTGC 59.405 55.000 0.00 0.00 0.00 5.25 R
1848 1937 4.123497 TGTCTTTGATCTGTATGACGGG 57.877 45.455 0.00 0.00 0.00 5.28 R
2740 2893 0.304705 GGTTTCACACTGACGCTGTG 59.695 55.000 12.71 12.71 40.44 3.66 R
4026 4318 1.205417 ACAACAAGCATTAGCATGGGC 59.795 47.619 0.00 0.00 43.41 5.36 R
4946 5877 0.039256 TTTTGAGGCAATGCGCTGTC 60.039 50.000 9.73 0.00 41.91 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.735126 GCCATACAAAGCCCAATCAACG 60.735 50.000 0.00 0.00 0.00 4.10
76 77 2.491693 CCATACAAAGCCCAATCAACGT 59.508 45.455 0.00 0.00 0.00 3.99
78 79 1.686355 ACAAAGCCCAATCAACGTGA 58.314 45.000 0.00 0.00 0.00 4.35
84 88 1.726853 CCCAATCAACGTGAGGACTC 58.273 55.000 0.00 0.00 0.00 3.36
256 260 2.999063 GGTGCAAGCCCAGGCAAT 60.999 61.111 12.03 0.00 42.45 3.56
1057 1066 0.246086 GCCCCTCAGCTCATCTATCG 59.754 60.000 0.00 0.00 0.00 2.92
1060 1069 1.067706 CCCTCAGCTCATCTATCGCAG 60.068 57.143 0.00 0.00 0.00 5.18
1108 1117 0.032130 TGACCGACAGACTGAGCAAC 59.968 55.000 10.08 0.00 0.00 4.17
1393 1428 2.611518 CGGCGACTTCATTTCTCTCTT 58.388 47.619 0.00 0.00 0.00 2.85
1848 1937 1.522569 CCCATGAAGGAGACGTCCC 59.477 63.158 13.01 13.26 45.26 4.46
2234 2344 2.414058 TGCAAACAGTAATGGCAACG 57.586 45.000 0.00 0.00 42.51 4.10
2380 2493 6.591935 AGACCTGAATTGACACTCTTTTGTA 58.408 36.000 0.00 0.00 0.00 2.41
2381 2494 7.227156 AGACCTGAATTGACACTCTTTTGTAT 58.773 34.615 0.00 0.00 0.00 2.29
2514 2640 6.669125 TGTCTTTTCATGAAATGGATGGTT 57.331 33.333 25.47 0.00 46.73 3.67
2641 2782 0.396974 TGCTTTGTGCCTTCCCTGTT 60.397 50.000 0.00 0.00 42.00 3.16
2646 2787 2.969821 TGTGCCTTCCCTGTTATGTT 57.030 45.000 0.00 0.00 0.00 2.71
2707 2858 5.083122 TGGAAAGGCATTTTATGAACCTGA 58.917 37.500 0.00 0.00 0.00 3.86
2802 2955 1.425066 TCTCCTGGGTGCTTGATGTTT 59.575 47.619 0.00 0.00 0.00 2.83
2811 2964 3.184986 GGTGCTTGATGTTTTCATTGTGC 59.815 43.478 0.00 0.00 41.05 4.57
2845 2998 1.388133 GGGTGAATGGGGGAGCTTT 59.612 57.895 0.00 0.00 0.00 3.51
2879 3032 5.049828 GCAAAGTCCAATGCTTTAGTTGTT 58.950 37.500 0.00 0.00 39.46 2.83
2880 3033 5.523552 GCAAAGTCCAATGCTTTAGTTGTTT 59.476 36.000 0.00 0.00 39.46 2.83
2962 3126 4.827284 TCAGTTTAGAAAAGCTGGGGAAAG 59.173 41.667 0.00 0.00 42.43 2.62
3035 3199 7.539034 AACAAATAGCTTTTGGTCAACCTAT 57.461 32.000 18.96 0.00 36.82 2.57
3042 3206 4.321974 GCTTTTGGTCAACCTATTTGGAGG 60.322 45.833 0.10 0.00 42.89 4.30
3095 3259 1.202510 TGTGTTGGCTGCCACATTTTC 60.203 47.619 23.30 10.89 36.70 2.29
3096 3260 0.392336 TGTTGGCTGCCACATTTTCC 59.608 50.000 23.30 4.05 30.78 3.13
3097 3261 0.320683 GTTGGCTGCCACATTTTCCC 60.321 55.000 23.30 0.00 30.78 3.97
3100 3264 1.912763 GCTGCCACATTTTCCCCCA 60.913 57.895 0.00 0.00 0.00 4.96
3110 3274 4.020396 CACATTTTCCCCCATTTCATCACA 60.020 41.667 0.00 0.00 0.00 3.58
3146 3338 4.402155 CCTGCCTTTATGCATTTCACCTTA 59.598 41.667 3.54 0.00 41.16 2.69
3288 3481 5.893255 CCCTTTTTAGGACATGATGAATGGA 59.107 40.000 0.00 0.00 40.94 3.41
3296 3489 3.693085 GACATGATGAATGGACAAGCAGT 59.307 43.478 0.00 0.00 40.94 4.40
3387 3580 3.281727 TTGCTTGACCACAGAAGTTCT 57.718 42.857 0.00 0.00 0.00 3.01
3441 3638 6.994496 TGCTAACAGCTAAGCAATCAGAATAT 59.006 34.615 13.49 0.00 45.36 1.28
3442 3639 7.500227 TGCTAACAGCTAAGCAATCAGAATATT 59.500 33.333 13.49 0.00 45.36 1.28
3444 3641 6.874288 ACAGCTAAGCAATCAGAATATTCC 57.126 37.500 11.92 0.00 0.00 3.01
3445 3642 5.468072 ACAGCTAAGCAATCAGAATATTCCG 59.532 40.000 11.92 1.83 0.00 4.30
3446 3643 4.453819 AGCTAAGCAATCAGAATATTCCGC 59.546 41.667 11.92 7.42 0.00 5.54
3447 3644 4.214119 GCTAAGCAATCAGAATATTCCGCA 59.786 41.667 11.92 0.00 0.00 5.69
3448 3645 5.277974 GCTAAGCAATCAGAATATTCCGCAA 60.278 40.000 11.92 0.00 0.00 4.85
3449 3646 5.581126 AAGCAATCAGAATATTCCGCAAA 57.419 34.783 11.92 0.00 0.00 3.68
3450 3647 5.581126 AGCAATCAGAATATTCCGCAAAA 57.419 34.783 11.92 0.00 0.00 2.44
3451 3648 5.964758 AGCAATCAGAATATTCCGCAAAAA 58.035 33.333 11.92 0.00 0.00 1.94
3480 3677 4.773323 AAGCTAAGCAATCAGAACAACC 57.227 40.909 0.00 0.00 0.00 3.77
3481 3678 3.754965 AGCTAAGCAATCAGAACAACCA 58.245 40.909 0.00 0.00 0.00 3.67
3482 3679 3.503748 AGCTAAGCAATCAGAACAACCAC 59.496 43.478 0.00 0.00 0.00 4.16
3483 3680 3.253188 GCTAAGCAATCAGAACAACCACA 59.747 43.478 0.00 0.00 0.00 4.17
3522 3719 3.627395 TTACATCTTCCGACTTGCCAT 57.373 42.857 0.00 0.00 0.00 4.40
3623 3822 5.451937 GCAGATATGTGCACTTACCTACTCA 60.452 44.000 19.27 0.00 43.41 3.41
3726 3926 3.181465 GCTTACTTGGAGCTATGCTGGTA 60.181 47.826 0.00 0.00 39.88 3.25
3775 3976 3.559171 CCACCTAGCTGCTCCTGTAAAAA 60.559 47.826 4.91 0.00 0.00 1.94
3804 4007 7.644062 TCCAGGTTTATACATGTTATTTCCCA 58.356 34.615 2.30 0.00 34.34 4.37
3818 4021 1.656587 TTCCCATACTGCAGGACACT 58.343 50.000 19.93 0.00 0.00 3.55
3928 4196 1.557099 TGTTCCGTCAGGCTCAGTAT 58.443 50.000 0.00 0.00 37.47 2.12
3988 4280 7.757624 TCTTAATTTCTTTGCGTCTTTGTGTTT 59.242 29.630 0.00 0.00 0.00 2.83
4026 4318 9.079833 CCTAATTATTTGAACTGACATTTGCTG 57.920 33.333 0.00 0.00 0.00 4.41
4122 4525 4.757149 ACCTTTCGCATGGCTATTAATCTC 59.243 41.667 0.00 0.00 0.00 2.75
4130 4533 6.105333 GCATGGCTATTAATCTCCAGACTAG 58.895 44.000 12.41 0.00 31.36 2.57
4132 4535 7.093727 GCATGGCTATTAATCTCCAGACTAGTA 60.094 40.741 12.41 0.00 31.36 1.82
4133 4536 8.465999 CATGGCTATTAATCTCCAGACTAGTAG 58.534 40.741 12.41 0.00 31.36 2.57
4167 4570 1.208293 GTCTCTGAGGTAAGCCAAGGG 59.792 57.143 4.59 0.00 37.19 3.95
4207 4612 0.467844 TGGTCATGCTGTTGGTTGCT 60.468 50.000 0.00 0.00 0.00 3.91
4216 4621 2.856222 CTGTTGGTTGCTTCTCCTCTT 58.144 47.619 0.00 0.00 0.00 2.85
4256 4662 6.088824 CCATGTTTCATGACAACTTAAGCTC 58.911 40.000 16.46 0.00 32.47 4.09
4376 4782 5.128991 TGGATTACGTGTATGGATTGTACCA 59.871 40.000 0.00 0.00 44.41 3.25
4404 4818 0.940126 CTGCGAATACATGGCCTGAC 59.060 55.000 3.32 0.00 0.00 3.51
4405 4819 0.463654 TGCGAATACATGGCCTGACC 60.464 55.000 3.32 0.00 39.84 4.02
4417 4831 1.412074 GGCCTGACCATCCATCCAAAT 60.412 52.381 0.00 0.00 38.86 2.32
4441 4855 4.214119 TGAAGAGTTGTAGATGCAAGCAAC 59.786 41.667 14.17 14.17 40.83 4.17
4470 4884 9.243637 GATATCTTTGCTTGTCTAGTGTAGAAG 57.756 37.037 0.00 0.00 36.40 2.85
4522 4946 1.270839 TGTTGGAGCTGCCTGTTACTC 60.271 52.381 1.53 0.00 37.63 2.59
4524 4948 0.898320 TGGAGCTGCCTGTTACTCTC 59.102 55.000 1.53 0.00 37.63 3.20
4525 4949 1.190643 GGAGCTGCCTGTTACTCTCT 58.809 55.000 0.00 0.00 0.00 3.10
4528 4952 0.898320 GCTGCCTGTTACTCTCTCCA 59.102 55.000 0.00 0.00 0.00 3.86
4529 4953 1.484240 GCTGCCTGTTACTCTCTCCAT 59.516 52.381 0.00 0.00 0.00 3.41
4530 4954 2.093235 GCTGCCTGTTACTCTCTCCATT 60.093 50.000 0.00 0.00 0.00 3.16
4532 4956 3.173151 TGCCTGTTACTCTCTCCATTGA 58.827 45.455 0.00 0.00 0.00 2.57
4534 4958 3.055819 GCCTGTTACTCTCTCCATTGACA 60.056 47.826 0.00 0.00 0.00 3.58
4535 4959 4.383552 GCCTGTTACTCTCTCCATTGACAT 60.384 45.833 0.00 0.00 0.00 3.06
4536 4960 5.738909 CCTGTTACTCTCTCCATTGACATT 58.261 41.667 0.00 0.00 0.00 2.71
4538 4962 6.758886 CCTGTTACTCTCTCCATTGACATTAC 59.241 42.308 0.00 0.00 0.00 1.89
4540 4964 7.097192 TGTTACTCTCTCCATTGACATTACAC 58.903 38.462 0.00 0.00 0.00 2.90
4542 4966 8.467598 GTTACTCTCTCCATTGACATTACACTA 58.532 37.037 0.00 0.00 0.00 2.74
4543 4967 7.106439 ACTCTCTCCATTGACATTACACTAG 57.894 40.000 0.00 0.00 0.00 2.57
4575 4999 9.673454 AAAAACTTCTTACATTATGGAACGTTC 57.327 29.630 20.14 20.14 0.00 3.95
4577 5001 7.360575 ACTTCTTACATTATGGAACGTTCAC 57.639 36.000 28.24 18.01 0.00 3.18
4579 5003 6.961359 TCTTACATTATGGAACGTTCACTG 57.039 37.500 28.24 18.30 0.00 3.66
4666 5206 9.650714 TTACGGGATATACTATGTAATATGGCT 57.349 33.333 0.00 0.00 0.00 4.75
4677 5585 5.782893 TGTAATATGGCTAATGGTTTGCC 57.217 39.130 7.98 7.98 46.26 4.52
4740 5648 1.477195 CGGGTGTTTGAGGGGTGTTTA 60.477 52.381 0.00 0.00 0.00 2.01
4742 5650 3.236047 GGGTGTTTGAGGGGTGTTTAAT 58.764 45.455 0.00 0.00 0.00 1.40
4745 5653 3.068873 GTGTTTGAGGGGTGTTTAATGCA 59.931 43.478 0.00 0.00 0.00 3.96
4754 5662 1.613437 GTGTTTAATGCACCTGGCTGT 59.387 47.619 0.00 0.00 45.15 4.40
4757 5665 3.244735 TGTTTAATGCACCTGGCTGTAGA 60.245 43.478 0.00 0.00 45.15 2.59
4758 5666 3.931907 TTAATGCACCTGGCTGTAGAT 57.068 42.857 0.00 0.00 45.15 1.98
4759 5667 2.048444 AATGCACCTGGCTGTAGATG 57.952 50.000 0.00 0.00 45.15 2.90
4760 5668 0.914644 ATGCACCTGGCTGTAGATGT 59.085 50.000 0.00 0.00 45.15 3.06
4776 5684 9.334693 GCTGTAGATGTTGTTAGAAAATTTCTG 57.665 33.333 17.70 0.00 40.94 3.02
4799 5707 7.391554 TCTGTTTTGGTGATAGAAAAGATCAGG 59.608 37.037 0.00 0.00 34.02 3.86
4807 5715 6.150140 GTGATAGAAAAGATCAGGCAAGTTGT 59.850 38.462 4.48 0.00 34.02 3.32
4821 5729 4.262420 GGCAAGTTGTGTTTACCATTCCAT 60.262 41.667 4.48 0.00 0.00 3.41
4871 5802 9.777297 ATGGCTAATTGTTTTTGACTTAATTGT 57.223 25.926 0.00 0.00 0.00 2.71
4905 5836 0.171007 CAAAATTCAGCGCGATGGGT 59.829 50.000 25.69 10.66 0.00 4.51
4939 5870 1.303236 TTGAGGCCCAATGACGTGG 60.303 57.895 0.00 0.00 38.51 4.94
4941 5872 2.034066 AGGCCCAATGACGTGGTG 59.966 61.111 0.00 0.00 36.90 4.17
4942 5873 2.033448 GGCCCAATGACGTGGTGA 59.967 61.111 0.00 0.00 36.90 4.02
4943 5874 2.040544 GGCCCAATGACGTGGTGAG 61.041 63.158 0.00 0.00 36.90 3.51
4944 5875 2.690778 GCCCAATGACGTGGTGAGC 61.691 63.158 0.00 0.00 36.90 4.26
4945 5876 2.040544 CCCAATGACGTGGTGAGCC 61.041 63.158 0.00 0.00 36.90 4.70
4946 5877 2.390599 CCAATGACGTGGTGAGCCG 61.391 63.158 0.00 0.00 37.67 5.52
4947 5878 1.374125 CAATGACGTGGTGAGCCGA 60.374 57.895 0.00 0.00 37.67 5.54
4948 5879 1.374252 AATGACGTGGTGAGCCGAC 60.374 57.895 0.00 0.00 37.67 4.79
4949 5880 2.094757 AATGACGTGGTGAGCCGACA 62.095 55.000 0.00 0.80 37.67 4.35
4950 5881 2.430921 GACGTGGTGAGCCGACAG 60.431 66.667 0.00 0.00 37.67 3.51
4951 5882 4.664677 ACGTGGTGAGCCGACAGC 62.665 66.667 0.00 0.00 44.25 4.40
4996 5927 2.972505 CTGACGGCGCACCACTTT 60.973 61.111 10.83 0.00 34.57 2.66
4997 5928 2.954753 CTGACGGCGCACCACTTTC 61.955 63.158 10.83 0.00 34.57 2.62
4998 5929 2.665185 GACGGCGCACCACTTTCT 60.665 61.111 10.83 0.00 34.57 2.52
4999 5930 2.954753 GACGGCGCACCACTTTCTG 61.955 63.158 10.83 0.00 34.57 3.02
5000 5931 2.972505 CGGCGCACCACTTTCTGT 60.973 61.111 10.83 0.00 34.57 3.41
5001 5932 2.542907 CGGCGCACCACTTTCTGTT 61.543 57.895 10.83 0.00 34.57 3.16
5002 5933 1.733526 GGCGCACCACTTTCTGTTT 59.266 52.632 10.83 0.00 35.26 2.83
5003 5934 0.317854 GGCGCACCACTTTCTGTTTC 60.318 55.000 10.83 0.00 35.26 2.78
5004 5935 0.317854 GCGCACCACTTTCTGTTTCC 60.318 55.000 0.30 0.00 0.00 3.13
5005 5936 0.041312 CGCACCACTTTCTGTTTCCG 60.041 55.000 0.00 0.00 0.00 4.30
5006 5937 0.310854 GCACCACTTTCTGTTTCCGG 59.689 55.000 0.00 0.00 0.00 5.14
5007 5938 0.310854 CACCACTTTCTGTTTCCGGC 59.689 55.000 0.00 0.00 0.00 6.13
5008 5939 1.164041 ACCACTTTCTGTTTCCGGCG 61.164 55.000 0.00 0.00 0.00 6.46
5009 5940 1.574428 CACTTTCTGTTTCCGGCGG 59.426 57.895 22.51 22.51 0.00 6.13
5010 5941 2.258726 ACTTTCTGTTTCCGGCGGC 61.259 57.895 23.83 8.26 0.00 6.53
5011 5942 3.308878 CTTTCTGTTTCCGGCGGCG 62.309 63.158 26.12 26.12 0.00 6.46
5012 5943 4.612412 TTCTGTTTCCGGCGGCGT 62.612 61.111 30.09 0.00 0.00 5.68
5013 5944 4.612412 TCTGTTTCCGGCGGCGTT 62.612 61.111 30.09 0.00 0.00 4.84
5014 5945 4.383602 CTGTTTCCGGCGGCGTTG 62.384 66.667 30.09 15.94 0.00 4.10
5051 5982 4.699522 GGCGGCGTGAACTCCCTT 62.700 66.667 9.37 0.00 0.00 3.95
5052 5983 2.668550 GCGGCGTGAACTCCCTTT 60.669 61.111 9.37 0.00 0.00 3.11
5053 5984 2.677979 GCGGCGTGAACTCCCTTTC 61.678 63.158 9.37 0.00 0.00 2.62
5054 5985 1.301401 CGGCGTGAACTCCCTTTCA 60.301 57.895 0.00 0.00 32.94 2.69
5055 5986 1.291877 CGGCGTGAACTCCCTTTCAG 61.292 60.000 0.00 0.00 36.15 3.02
5056 5987 0.955919 GGCGTGAACTCCCTTTCAGG 60.956 60.000 2.03 2.03 41.99 3.86
5057 5988 2.544726 CGTGAACTCCCTTTCAGGC 58.455 57.895 0.00 0.00 36.15 4.85
5058 5989 0.250295 CGTGAACTCCCTTTCAGGCA 60.250 55.000 0.00 0.00 36.15 4.75
5059 5990 1.528129 GTGAACTCCCTTTCAGGCAG 58.472 55.000 0.00 0.00 36.15 4.85
5060 5991 0.250901 TGAACTCCCTTTCAGGCAGC 60.251 55.000 0.00 0.00 32.73 5.25
5061 5992 0.250901 GAACTCCCTTTCAGGCAGCA 60.251 55.000 0.00 0.00 32.73 4.41
5062 5993 0.538287 AACTCCCTTTCAGGCAGCAC 60.538 55.000 0.00 0.00 32.73 4.40
5063 5994 2.032528 TCCCTTTCAGGCAGCACG 59.967 61.111 0.00 0.00 32.73 5.34
5064 5995 2.032528 CCCTTTCAGGCAGCACGA 59.967 61.111 0.00 0.00 32.73 4.35
5065 5996 2.037136 CCCTTTCAGGCAGCACGAG 61.037 63.158 0.00 0.00 32.73 4.18
5066 5997 2.684843 CCTTTCAGGCAGCACGAGC 61.685 63.158 0.00 0.00 42.56 5.03
5091 6022 4.831307 CGAGCGGCGCGTCTTAGT 62.831 66.667 27.59 6.76 0.00 2.24
5092 6023 3.248171 GAGCGGCGCGTCTTAGTG 61.248 66.667 27.59 0.00 0.00 2.74
5101 6032 4.789075 GTCTTAGTGCGGCGGCGA 62.789 66.667 36.87 17.46 44.10 5.54
5102 6033 4.058732 TCTTAGTGCGGCGGCGAA 62.059 61.111 36.87 24.92 44.10 4.70
5103 6034 2.890474 CTTAGTGCGGCGGCGAAT 60.890 61.111 36.87 21.09 44.10 3.34
5104 6035 2.871427 CTTAGTGCGGCGGCGAATC 61.871 63.158 36.87 22.26 44.10 2.52
5105 6036 4.884257 TAGTGCGGCGGCGAATCC 62.884 66.667 36.87 17.82 44.10 3.01
5459 6390 3.237522 GACGTCGATCTAGTGGCAC 57.762 57.895 10.29 10.29 0.00 5.01
5460 6391 0.589229 GACGTCGATCTAGTGGCACG 60.589 60.000 12.71 0.00 0.00 5.34
5461 6392 1.298413 CGTCGATCTAGTGGCACGG 60.298 63.158 12.71 9.54 0.00 4.94
5462 6393 1.589196 GTCGATCTAGTGGCACGGC 60.589 63.158 12.71 0.00 0.00 5.68
5463 6394 2.655364 CGATCTAGTGGCACGGCG 60.655 66.667 12.71 4.80 0.00 6.46
5464 6395 2.279517 GATCTAGTGGCACGGCGG 60.280 66.667 13.24 0.66 0.00 6.13
5465 6396 3.792053 GATCTAGTGGCACGGCGGG 62.792 68.421 13.24 8.95 0.00 6.13
5477 6408 4.699522 GGCGGGCGTTTGAGACCT 62.700 66.667 0.00 0.00 37.08 3.85
5478 6409 3.119096 GCGGGCGTTTGAGACCTC 61.119 66.667 0.00 0.00 37.08 3.85
5479 6410 2.809601 CGGGCGTTTGAGACCTCG 60.810 66.667 0.00 0.00 37.08 4.63
5480 6411 3.119096 GGGCGTTTGAGACCTCGC 61.119 66.667 0.00 0.00 46.42 5.03
5482 6413 3.876300 GCGTTTGAGACCTCGCAT 58.124 55.556 0.00 0.00 46.40 4.73
5483 6414 1.421485 GCGTTTGAGACCTCGCATG 59.579 57.895 0.00 0.00 46.40 4.06
5484 6415 1.970917 GCGTTTGAGACCTCGCATGG 61.971 60.000 0.00 0.00 46.40 3.66
5485 6416 1.361668 CGTTTGAGACCTCGCATGGG 61.362 60.000 2.76 2.76 0.00 4.00
5486 6417 1.026718 GTTTGAGACCTCGCATGGGG 61.027 60.000 10.21 0.73 0.00 4.96
5487 6418 1.488705 TTTGAGACCTCGCATGGGGT 61.489 55.000 10.21 0.30 38.70 4.95
5490 6421 2.990479 GACCTCGCATGGGGTCTT 59.010 61.111 10.21 0.00 45.99 3.01
5491 6422 1.299976 GACCTCGCATGGGGTCTTT 59.700 57.895 10.21 0.00 45.99 2.52
5492 6423 0.322546 GACCTCGCATGGGGTCTTTT 60.323 55.000 10.21 0.00 45.99 2.27
5493 6424 0.609131 ACCTCGCATGGGGTCTTTTG 60.609 55.000 10.21 0.00 0.00 2.44
5494 6425 0.609131 CCTCGCATGGGGTCTTTTGT 60.609 55.000 10.21 0.00 0.00 2.83
5495 6426 0.804989 CTCGCATGGGGTCTTTTGTC 59.195 55.000 10.21 0.00 0.00 3.18
5496 6427 0.953471 TCGCATGGGGTCTTTTGTCG 60.953 55.000 10.21 0.00 0.00 4.35
5497 6428 1.883021 GCATGGGGTCTTTTGTCGG 59.117 57.895 0.00 0.00 0.00 4.79
5498 6429 1.883021 CATGGGGTCTTTTGTCGGC 59.117 57.895 0.00 0.00 0.00 5.54
5499 6430 1.674322 ATGGGGTCTTTTGTCGGCG 60.674 57.895 0.00 0.00 0.00 6.46
5500 6431 3.733960 GGGGTCTTTTGTCGGCGC 61.734 66.667 0.00 0.00 0.00 6.53
5501 6432 2.668550 GGGTCTTTTGTCGGCGCT 60.669 61.111 7.64 0.00 0.00 5.92
5502 6433 1.375013 GGGTCTTTTGTCGGCGCTA 60.375 57.895 7.64 0.00 0.00 4.26
5503 6434 1.632948 GGGTCTTTTGTCGGCGCTAC 61.633 60.000 7.64 6.95 0.00 3.58
5504 6435 0.669625 GGTCTTTTGTCGGCGCTACT 60.670 55.000 7.64 0.00 0.00 2.57
5505 6436 0.714439 GTCTTTTGTCGGCGCTACTC 59.286 55.000 7.64 0.00 0.00 2.59
5506 6437 0.601558 TCTTTTGTCGGCGCTACTCT 59.398 50.000 7.64 0.00 0.00 3.24
5507 6438 0.716108 CTTTTGTCGGCGCTACTCTG 59.284 55.000 7.64 0.00 0.00 3.35
5508 6439 0.669318 TTTTGTCGGCGCTACTCTGG 60.669 55.000 7.64 0.00 0.00 3.86
5509 6440 3.642778 TTGTCGGCGCTACTCTGGC 62.643 63.158 7.64 0.00 0.00 4.85
5510 6441 4.874977 GTCGGCGCTACTCTGGCC 62.875 72.222 7.64 0.00 43.42 5.36
5529 6460 4.162690 CGGCAGCCCAGGACCTAC 62.163 72.222 5.63 0.00 0.00 3.18
5530 6461 3.009115 GGCAGCCCAGGACCTACA 61.009 66.667 0.00 0.00 0.00 2.74
5531 6462 2.378634 GGCAGCCCAGGACCTACAT 61.379 63.158 0.00 0.00 0.00 2.29
5532 6463 1.054406 GGCAGCCCAGGACCTACATA 61.054 60.000 0.00 0.00 0.00 2.29
5533 6464 1.059913 GCAGCCCAGGACCTACATAT 58.940 55.000 0.00 0.00 0.00 1.78
5534 6465 1.421646 GCAGCCCAGGACCTACATATT 59.578 52.381 0.00 0.00 0.00 1.28
5535 6466 2.551071 GCAGCCCAGGACCTACATATTC 60.551 54.545 0.00 0.00 0.00 1.75
5536 6467 2.039084 CAGCCCAGGACCTACATATTCC 59.961 54.545 0.00 0.00 0.00 3.01
5537 6468 1.002087 GCCCAGGACCTACATATTCCG 59.998 57.143 0.00 0.00 34.31 4.30
5538 6469 1.623811 CCCAGGACCTACATATTCCGG 59.376 57.143 0.00 0.00 34.31 5.14
5539 6470 1.002087 CCAGGACCTACATATTCCGGC 59.998 57.143 0.00 0.00 34.31 6.13
5540 6471 0.966920 AGGACCTACATATTCCGGCG 59.033 55.000 0.00 0.00 34.31 6.46
5541 6472 0.677842 GGACCTACATATTCCGGCGT 59.322 55.000 6.01 0.00 0.00 5.68
5542 6473 1.336609 GGACCTACATATTCCGGCGTC 60.337 57.143 6.01 0.00 0.00 5.19
5543 6474 1.612463 GACCTACATATTCCGGCGTCT 59.388 52.381 6.01 0.00 0.00 4.18
5544 6475 2.816087 GACCTACATATTCCGGCGTCTA 59.184 50.000 6.01 0.00 0.00 2.59
5545 6476 3.428532 ACCTACATATTCCGGCGTCTAT 58.571 45.455 6.01 0.00 0.00 1.98
5546 6477 3.192844 ACCTACATATTCCGGCGTCTATG 59.807 47.826 6.01 11.89 0.00 2.23
5547 6478 2.743636 ACATATTCCGGCGTCTATGG 57.256 50.000 18.48 4.13 0.00 2.74
5548 6479 1.968493 ACATATTCCGGCGTCTATGGT 59.032 47.619 18.48 4.65 0.00 3.55
5549 6480 2.367567 ACATATTCCGGCGTCTATGGTT 59.632 45.455 18.48 3.26 0.00 3.67
5550 6481 3.181458 ACATATTCCGGCGTCTATGGTTT 60.181 43.478 18.48 2.75 0.00 3.27
5551 6482 1.663695 ATTCCGGCGTCTATGGTTTG 58.336 50.000 6.01 0.00 0.00 2.93
5552 6483 1.022451 TTCCGGCGTCTATGGTTTGC 61.022 55.000 6.01 0.00 0.00 3.68
5553 6484 2.469516 CCGGCGTCTATGGTTTGCC 61.470 63.158 6.01 0.00 42.29 4.52
5562 6493 4.668151 TGGTTTGCCAGGTCGTTT 57.332 50.000 0.00 0.00 40.46 3.60
5563 6494 2.889200 TGGTTTGCCAGGTCGTTTT 58.111 47.368 0.00 0.00 40.46 2.43
5564 6495 1.187087 TGGTTTGCCAGGTCGTTTTT 58.813 45.000 0.00 0.00 40.46 1.94
5594 6525 3.139029 GGTCAGTGACCGGTTCATC 57.861 57.895 26.12 1.30 43.14 2.92
5595 6526 0.391263 GGTCAGTGACCGGTTCATCC 60.391 60.000 26.12 3.56 43.14 3.51
5605 6536 4.875713 GTTCATCCGCCCGGGCAT 62.876 66.667 42.78 28.30 42.06 4.40
5606 6537 4.122149 TTCATCCGCCCGGGCATT 62.122 61.111 42.78 25.00 42.06 3.56
5607 6538 3.653664 TTCATCCGCCCGGGCATTT 62.654 57.895 42.78 24.62 42.06 2.32
5608 6539 3.903282 CATCCGCCCGGGCATTTG 61.903 66.667 42.78 30.62 42.06 2.32
5609 6540 4.122149 ATCCGCCCGGGCATTTGA 62.122 61.111 42.78 31.30 42.06 2.69
5610 6541 4.794648 TCCGCCCGGGCATTTGAG 62.795 66.667 42.78 25.99 42.06 3.02
5614 6545 4.060667 CCCGGGCATTTGAGGGGT 62.061 66.667 8.08 0.00 40.18 4.95
5615 6546 2.755469 CCGGGCATTTGAGGGGTG 60.755 66.667 0.00 0.00 0.00 4.61
5616 6547 2.035626 CGGGCATTTGAGGGGTGT 59.964 61.111 0.00 0.00 0.00 4.16
5617 6548 1.606313 CGGGCATTTGAGGGGTGTT 60.606 57.895 0.00 0.00 0.00 3.32
5618 6549 1.184970 CGGGCATTTGAGGGGTGTTT 61.185 55.000 0.00 0.00 0.00 2.83
5619 6550 1.888826 CGGGCATTTGAGGGGTGTTTA 60.889 52.381 0.00 0.00 0.00 2.01
5620 6551 2.252714 GGGCATTTGAGGGGTGTTTAA 58.747 47.619 0.00 0.00 0.00 1.52
5621 6552 2.233676 GGGCATTTGAGGGGTGTTTAAG 59.766 50.000 0.00 0.00 0.00 1.85
5622 6553 2.233676 GGCATTTGAGGGGTGTTTAAGG 59.766 50.000 0.00 0.00 0.00 2.69
5623 6554 2.353704 GCATTTGAGGGGTGTTTAAGGC 60.354 50.000 0.00 0.00 0.00 4.35
5624 6555 2.757894 TTTGAGGGGTGTTTAAGGCA 57.242 45.000 0.00 0.00 0.00 4.75
5625 6556 1.989706 TTGAGGGGTGTTTAAGGCAC 58.010 50.000 4.30 4.30 36.22 5.01
5638 6569 4.547859 GGCACCTGGCTGTAGATG 57.452 61.111 0.00 0.00 44.01 2.90
5639 6570 1.821332 GGCACCTGGCTGTAGATGC 60.821 63.158 0.00 0.00 44.01 3.91
5647 6578 2.596904 GGCTGTAGATGCCGTTAGAA 57.403 50.000 0.00 0.00 41.03 2.10
5648 6579 2.901249 GGCTGTAGATGCCGTTAGAAA 58.099 47.619 0.00 0.00 41.03 2.52
5649 6580 3.267483 GGCTGTAGATGCCGTTAGAAAA 58.733 45.455 0.00 0.00 41.03 2.29
5650 6581 3.877508 GGCTGTAGATGCCGTTAGAAAAT 59.122 43.478 0.00 0.00 41.03 1.82
5651 6582 4.335594 GGCTGTAGATGCCGTTAGAAAATT 59.664 41.667 0.00 0.00 41.03 1.82
5652 6583 5.163652 GGCTGTAGATGCCGTTAGAAAATTT 60.164 40.000 0.00 0.00 41.03 1.82
5653 6584 5.965918 GCTGTAGATGCCGTTAGAAAATTTC 59.034 40.000 0.00 0.00 0.00 2.17
5654 6585 6.183360 GCTGTAGATGCCGTTAGAAAATTTCT 60.183 38.462 13.20 13.20 43.72 2.52
5655 6586 7.011109 GCTGTAGATGCCGTTAGAAAATTTCTA 59.989 37.037 11.10 11.10 41.14 2.10
5656 6587 8.958119 TGTAGATGCCGTTAGAAAATTTCTAT 57.042 30.769 15.30 1.61 41.58 1.98
5657 6588 9.391006 TGTAGATGCCGTTAGAAAATTTCTATT 57.609 29.630 15.30 0.00 41.58 1.73
5660 6591 9.573133 AGATGCCGTTAGAAAATTTCTATTTTG 57.427 29.630 15.30 6.91 42.51 2.44
5661 6592 8.702163 ATGCCGTTAGAAAATTTCTATTTTGG 57.298 30.769 15.30 14.40 42.51 3.28
5662 6593 7.887381 TGCCGTTAGAAAATTTCTATTTTGGA 58.113 30.769 15.30 4.75 42.51 3.53
5663 6594 8.026607 TGCCGTTAGAAAATTTCTATTTTGGAG 58.973 33.333 15.30 3.62 42.51 3.86
5664 6595 8.241367 GCCGTTAGAAAATTTCTATTTTGGAGA 58.759 33.333 15.30 0.00 42.51 3.71
5678 6609 9.553064 TCTATTTTGGAGATAGAAAAGATCAGC 57.447 33.333 0.00 0.00 34.17 4.26
5679 6610 9.558396 CTATTTTGGAGATAGAAAAGATCAGCT 57.442 33.333 0.00 0.00 30.32 4.24
5681 6612 8.723942 TTTTGGAGATAGAAAAGATCAGCTAC 57.276 34.615 0.00 0.00 0.00 3.58
5682 6613 6.078202 TGGAGATAGAAAAGATCAGCTACG 57.922 41.667 0.00 0.00 0.00 3.51
5683 6614 5.594725 TGGAGATAGAAAAGATCAGCTACGT 59.405 40.000 0.00 0.00 0.00 3.57
5684 6615 6.096987 TGGAGATAGAAAAGATCAGCTACGTT 59.903 38.462 0.00 0.00 0.00 3.99
5685 6616 6.419413 GGAGATAGAAAAGATCAGCTACGTTG 59.581 42.308 0.00 0.00 0.00 4.10
5686 6617 6.868622 AGATAGAAAAGATCAGCTACGTTGT 58.131 36.000 0.00 0.00 0.00 3.32
5687 6618 6.754209 AGATAGAAAAGATCAGCTACGTTGTG 59.246 38.462 0.00 0.00 0.00 3.33
5688 6619 4.632153 AGAAAAGATCAGCTACGTTGTGT 58.368 39.130 0.00 0.00 0.00 3.72
5689 6620 5.057149 AGAAAAGATCAGCTACGTTGTGTT 58.943 37.500 0.00 0.00 0.00 3.32
5690 6621 5.527582 AGAAAAGATCAGCTACGTTGTGTTT 59.472 36.000 0.00 0.00 0.00 2.83
5691 6622 6.704493 AGAAAAGATCAGCTACGTTGTGTTTA 59.296 34.615 0.00 0.00 0.00 2.01
5692 6623 5.840940 AAGATCAGCTACGTTGTGTTTAC 57.159 39.130 0.00 0.00 0.00 2.01
5693 6624 4.243270 AGATCAGCTACGTTGTGTTTACC 58.757 43.478 0.00 0.00 0.00 2.85
5694 6625 3.455990 TCAGCTACGTTGTGTTTACCA 57.544 42.857 0.00 0.00 0.00 3.25
5695 6626 3.997762 TCAGCTACGTTGTGTTTACCAT 58.002 40.909 0.00 0.00 0.00 3.55
5696 6627 4.382291 TCAGCTACGTTGTGTTTACCATT 58.618 39.130 0.00 0.00 0.00 3.16
5697 6628 4.449743 TCAGCTACGTTGTGTTTACCATTC 59.550 41.667 0.00 0.00 0.00 2.67
5698 6629 3.749609 AGCTACGTTGTGTTTACCATTCC 59.250 43.478 0.00 0.00 0.00 3.01
5699 6630 3.499157 GCTACGTTGTGTTTACCATTCCA 59.501 43.478 0.00 0.00 0.00 3.53
5700 6631 4.155280 GCTACGTTGTGTTTACCATTCCAT 59.845 41.667 0.00 0.00 0.00 3.41
5701 6632 5.352016 GCTACGTTGTGTTTACCATTCCATA 59.648 40.000 0.00 0.00 0.00 2.74
5702 6633 6.128227 GCTACGTTGTGTTTACCATTCCATAA 60.128 38.462 0.00 0.00 0.00 1.90
5703 6634 6.636562 ACGTTGTGTTTACCATTCCATAAA 57.363 33.333 0.00 0.00 0.00 1.40
5704 6635 6.440436 ACGTTGTGTTTACCATTCCATAAAC 58.560 36.000 0.00 0.00 40.28 2.01
5705 6636 6.039493 ACGTTGTGTTTACCATTCCATAAACA 59.961 34.615 5.66 5.66 44.83 2.83
5740 6671 9.855021 AATGTAATATGGCTAACTGTTTTTGAC 57.145 29.630 0.00 0.00 0.00 3.18
5741 6672 8.630054 TGTAATATGGCTAACTGTTTTTGACT 57.370 30.769 0.00 0.00 0.00 3.41
5742 6673 9.073475 TGTAATATGGCTAACTGTTTTTGACTT 57.927 29.630 0.00 0.00 0.00 3.01
5747 6678 8.816640 ATGGCTAACTGTTTTTGACTTAATTG 57.183 30.769 0.00 0.00 0.00 2.32
5748 6679 7.777095 TGGCTAACTGTTTTTGACTTAATTGT 58.223 30.769 0.00 0.00 0.00 2.71
5749 6680 8.904834 TGGCTAACTGTTTTTGACTTAATTGTA 58.095 29.630 0.00 0.00 0.00 2.41
5750 6681 9.908152 GGCTAACTGTTTTTGACTTAATTGTAT 57.092 29.630 0.00 0.00 0.00 2.29
5761 6692 8.781067 TTGACTTAATTGTATTATTGCATCGC 57.219 30.769 0.00 0.00 0.00 4.58
5762 6693 7.924940 TGACTTAATTGTATTATTGCATCGCA 58.075 30.769 0.00 0.00 36.47 5.10
5763 6694 7.855409 TGACTTAATTGTATTATTGCATCGCAC 59.145 33.333 0.00 0.00 38.71 5.34
5764 6695 7.702386 ACTTAATTGTATTATTGCATCGCACA 58.298 30.769 0.00 0.00 38.71 4.57
5765 6696 8.187480 ACTTAATTGTATTATTGCATCGCACAA 58.813 29.630 0.00 0.00 38.71 3.33
5766 6697 8.917415 TTAATTGTATTATTGCATCGCACAAA 57.083 26.923 0.00 0.00 38.71 2.83
5767 6698 7.824704 AATTGTATTATTGCATCGCACAAAA 57.175 28.000 0.00 0.00 38.71 2.44
5768 6699 6.624710 TTGTATTATTGCATCGCACAAAAC 57.375 33.333 0.00 0.00 38.71 2.43
5769 6700 5.948588 TGTATTATTGCATCGCACAAAACT 58.051 33.333 0.00 0.00 38.71 2.66
5770 6701 6.027131 TGTATTATTGCATCGCACAAAACTC 58.973 36.000 0.00 0.00 38.71 3.01
5771 6702 4.495911 TTATTGCATCGCACAAAACTCA 57.504 36.364 0.00 0.00 38.71 3.41
5772 6703 2.404265 TTGCATCGCACAAAACTCAG 57.596 45.000 0.00 0.00 38.71 3.35
5773 6704 0.040157 TGCATCGCACAAAACTCAGC 60.040 50.000 0.00 0.00 31.71 4.26
5776 6707 4.194312 CGCACAAAACTCAGCGTG 57.806 55.556 0.00 0.00 44.67 5.34
5777 6708 1.641140 CGCACAAAACTCAGCGTGA 59.359 52.632 0.00 0.00 44.67 4.35
5778 6709 0.235665 CGCACAAAACTCAGCGTGAT 59.764 50.000 0.00 0.00 44.67 3.06
5779 6710 1.678360 GCACAAAACTCAGCGTGATG 58.322 50.000 0.00 0.00 0.00 3.07
5780 6711 1.664016 GCACAAAACTCAGCGTGATGG 60.664 52.381 0.00 0.00 0.00 3.51
5781 6712 1.069022 CACAAAACTCAGCGTGATGGG 60.069 52.381 0.00 0.00 0.00 4.00
5782 6713 0.109597 CAAAACTCAGCGTGATGGGC 60.110 55.000 0.00 0.00 0.00 5.36
5783 6714 0.250901 AAAACTCAGCGTGATGGGCT 60.251 50.000 0.00 0.00 42.61 5.19
5784 6715 0.250901 AAACTCAGCGTGATGGGCTT 60.251 50.000 0.00 0.00 39.08 4.35
5785 6716 0.250901 AACTCAGCGTGATGGGCTTT 60.251 50.000 0.00 0.00 39.08 3.51
5786 6717 0.957395 ACTCAGCGTGATGGGCTTTG 60.957 55.000 0.00 0.00 39.08 2.77
5787 6718 2.180017 CAGCGTGATGGGCTTTGC 59.820 61.111 0.00 0.00 39.08 3.68
5788 6719 2.282391 AGCGTGATGGGCTTTGCA 60.282 55.556 0.00 0.00 37.50 4.08
5789 6720 2.180017 GCGTGATGGGCTTTGCAG 59.820 61.111 0.00 0.00 0.00 4.41
5790 6721 2.629656 GCGTGATGGGCTTTGCAGT 61.630 57.895 0.00 0.00 0.00 4.40
5791 6722 1.959085 CGTGATGGGCTTTGCAGTT 59.041 52.632 0.00 0.00 0.00 3.16
5792 6723 0.387622 CGTGATGGGCTTTGCAGTTG 60.388 55.000 0.00 0.00 0.00 3.16
5793 6724 0.037975 GTGATGGGCTTTGCAGTTGG 60.038 55.000 0.00 0.00 0.00 3.77
5794 6725 1.186917 TGATGGGCTTTGCAGTTGGG 61.187 55.000 0.00 0.00 0.00 4.12
5795 6726 1.891722 GATGGGCTTTGCAGTTGGGG 61.892 60.000 0.00 0.00 0.00 4.96
5796 6727 4.007644 GGGCTTTGCAGTTGGGGC 62.008 66.667 0.00 0.00 0.00 5.80
5797 6728 4.007644 GGCTTTGCAGTTGGGGCC 62.008 66.667 0.00 0.00 0.00 5.80
5798 6729 2.919328 GCTTTGCAGTTGGGGCCT 60.919 61.111 0.84 0.00 0.00 5.19
5799 6730 2.510551 GCTTTGCAGTTGGGGCCTT 61.511 57.895 0.84 0.00 0.00 4.35
5800 6731 1.368579 CTTTGCAGTTGGGGCCTTG 59.631 57.895 0.84 0.00 0.00 3.61
5801 6732 1.075674 TTTGCAGTTGGGGCCTTGA 60.076 52.632 0.84 0.00 0.00 3.02
5802 6733 1.114722 TTTGCAGTTGGGGCCTTGAG 61.115 55.000 0.84 0.00 0.00 3.02
5803 6734 2.677875 GCAGTTGGGGCCTTGAGG 60.678 66.667 0.84 0.00 38.53 3.86
5814 6745 3.998560 CCTTGAGGCCCAATTACCA 57.001 52.632 0.00 0.00 33.68 3.25
5815 6746 2.459555 CCTTGAGGCCCAATTACCAT 57.540 50.000 0.00 0.00 33.68 3.55
5816 6747 2.034124 CCTTGAGGCCCAATTACCATG 58.966 52.381 0.00 0.00 33.68 3.66
5817 6748 2.624029 CCTTGAGGCCCAATTACCATGT 60.624 50.000 0.00 0.00 33.68 3.21
5818 6749 2.142356 TGAGGCCCAATTACCATGTG 57.858 50.000 0.00 0.00 0.00 3.21
5819 6750 1.341877 TGAGGCCCAATTACCATGTGG 60.342 52.381 0.00 0.00 42.17 4.17
5820 6751 0.687427 AGGCCCAATTACCATGTGGC 60.687 55.000 0.00 0.00 39.32 5.01
5832 6763 1.066908 CCATGTGGCGAGTTGTTTGTT 59.933 47.619 0.00 0.00 0.00 2.83
5852 6783 3.099170 CCCTATGCAGGCCCAGGT 61.099 66.667 0.00 0.00 41.08 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.681564 TCACGGCACTGTTTGGGTTT 60.682 50.000 0.00 0.00 0.00 3.27
2 3 1.525995 CTCACGGCACTGTTTGGGT 60.526 57.895 0.00 0.00 0.00 4.51
3 4 2.908073 GCTCACGGCACTGTTTGGG 61.908 63.158 0.00 0.00 41.35 4.12
4 5 2.639286 GCTCACGGCACTGTTTGG 59.361 61.111 0.00 0.00 41.35 3.28
5 6 1.568612 ATCGCTCACGGCACTGTTTG 61.569 55.000 0.00 0.00 41.91 2.93
27 28 2.573083 CCCACGTTGCAAAGCCCAT 61.573 57.895 12.54 0.00 0.00 4.00
57 58 3.417101 TCACGTTGATTGGGCTTTGTAT 58.583 40.909 0.00 0.00 0.00 2.29
76 77 4.349636 TGATTTAGGGTTTGTGAGTCCTCA 59.650 41.667 0.00 0.00 37.24 3.86
78 79 4.993705 TGATTTAGGGTTTGTGAGTCCT 57.006 40.909 0.00 0.00 0.00 3.85
84 88 3.855524 GCCACGTTGATTTAGGGTTTGTG 60.856 47.826 0.00 0.00 0.00 3.33
96 100 3.925630 CTGGGCCTGCCACGTTGAT 62.926 63.158 10.86 0.00 37.98 2.57
242 246 1.664321 CTGAGATTGCCTGGGCTTGC 61.664 60.000 13.05 2.15 42.51 4.01
243 247 1.035932 CCTGAGATTGCCTGGGCTTG 61.036 60.000 13.05 0.00 42.51 4.01
244 248 1.305623 CCTGAGATTGCCTGGGCTT 59.694 57.895 13.05 0.40 42.51 4.35
245 249 1.919600 GACCTGAGATTGCCTGGGCT 61.920 60.000 13.05 0.00 42.51 5.19
246 250 1.452833 GACCTGAGATTGCCTGGGC 60.453 63.158 4.43 4.43 42.35 5.36
247 251 1.225704 GGACCTGAGATTGCCTGGG 59.774 63.158 0.00 0.00 0.00 4.45
248 252 1.153289 CGGACCTGAGATTGCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
249 253 1.817099 GCGGACCTGAGATTGCCTG 60.817 63.158 0.00 0.00 0.00 4.85
250 254 1.557269 AAGCGGACCTGAGATTGCCT 61.557 55.000 0.00 0.00 0.00 4.75
251 255 1.078143 AAGCGGACCTGAGATTGCC 60.078 57.895 0.00 0.00 0.00 4.52
256 260 2.683933 GGGGAAGCGGACCTGAGA 60.684 66.667 0.00 0.00 0.00 3.27
301 305 3.300667 CTTCTGCTTCACACGCCGC 62.301 63.158 0.00 0.00 0.00 6.53
302 306 2.856032 CTTCTGCTTCACACGCCG 59.144 61.111 0.00 0.00 0.00 6.46
303 307 2.180131 CTGCTTCTGCTTCACACGCC 62.180 60.000 0.00 0.00 40.48 5.68
1057 1066 0.595095 CAAGTTGAGTTGGGAGCTGC 59.405 55.000 0.00 0.00 0.00 5.25
1108 1117 6.348786 CCTGCCGATCCATTGAAAATGTATAG 60.349 42.308 0.00 0.00 0.00 1.31
1393 1428 6.289745 GACTGTTGTCGTAATTGGTAACAA 57.710 37.500 0.00 0.00 46.91 2.83
1848 1937 4.123497 TGTCTTTGATCTGTATGACGGG 57.877 45.455 0.00 0.00 0.00 5.28
2160 2270 1.682087 GCACGCCTCCTTTAATCCCTT 60.682 52.381 0.00 0.00 0.00 3.95
2234 2344 3.498774 ACTACATGATCCCAGCCATTC 57.501 47.619 0.00 0.00 0.00 2.67
2337 2450 7.047891 CAGGTCTAACTAAGGAACATGCATAA 58.952 38.462 0.00 0.00 0.00 1.90
2380 2493 7.779490 TCTCTCTAGAGGATCCCACATATAT 57.221 40.000 19.67 0.00 42.30 0.86
2381 2494 7.367277 CCATCTCTCTAGAGGATCCCACATATA 60.367 44.444 19.67 0.00 42.30 0.86
2514 2640 8.740123 TTTGACACTTACTCCTGAATTTACAA 57.260 30.769 0.00 0.00 0.00 2.41
2542 2668 5.146010 TGCACATTACTGATATGCCGATA 57.854 39.130 0.00 0.00 35.37 2.92
2576 2708 6.092122 TGCAGACAACTAAGGATAAAATGACG 59.908 38.462 0.00 0.00 0.00 4.35
2740 2893 0.304705 GGTTTCACACTGACGCTGTG 59.695 55.000 12.71 12.71 40.44 3.66
2802 2955 2.560861 GAAGCGCCGCACAATGAA 59.439 55.556 13.36 0.00 0.00 2.57
2827 2980 0.629058 TAAAGCTCCCCCATTCACCC 59.371 55.000 0.00 0.00 0.00 4.61
2829 2982 3.769300 ACATTTAAAGCTCCCCCATTCAC 59.231 43.478 0.00 0.00 0.00 3.18
2836 2989 4.384940 TGCAAAAACATTTAAAGCTCCCC 58.615 39.130 0.00 0.00 0.00 4.81
2845 2998 6.541641 AGCATTGGACTTTGCAAAAACATTTA 59.458 30.769 13.84 0.00 41.35 1.40
2962 3126 0.590195 CCTGTCTGTGCACTCAAAGC 59.410 55.000 19.41 4.20 0.00 3.51
3035 3199 2.107378 TCAACACCAGCATACCTCCAAA 59.893 45.455 0.00 0.00 0.00 3.28
3042 3206 3.599343 TCAGACATCAACACCAGCATAC 58.401 45.455 0.00 0.00 0.00 2.39
3095 3259 3.220110 CTCATCTGTGATGAAATGGGGG 58.780 50.000 10.83 0.00 32.98 5.40
3096 3260 3.894759 ACTCATCTGTGATGAAATGGGG 58.105 45.455 10.83 2.35 32.98 4.96
3097 3261 4.097437 CCAACTCATCTGTGATGAAATGGG 59.903 45.833 21.33 12.93 33.60 4.00
3100 3264 5.416952 GGAACCAACTCATCTGTGATGAAAT 59.583 40.000 10.83 1.19 32.98 2.17
3110 3274 1.366319 AGGCAGGAACCAACTCATCT 58.634 50.000 0.00 0.00 0.00 2.90
3146 3338 3.361281 TCAGGGGCGTCTACGATATAT 57.639 47.619 6.71 0.00 43.02 0.86
3288 3481 6.639632 ACAGAAATTACATTCACTGCTTGT 57.360 33.333 0.00 0.00 33.22 3.16
3387 3580 3.118261 GCCTGGTAGTTGATCTCCAATGA 60.118 47.826 0.00 0.00 37.08 2.57
3456 3653 5.985530 GGTTGTTCTGATTGCTTAGCTTTTT 59.014 36.000 5.60 0.00 0.00 1.94
3457 3654 5.068987 TGGTTGTTCTGATTGCTTAGCTTTT 59.931 36.000 5.60 0.00 0.00 2.27
3458 3655 4.584325 TGGTTGTTCTGATTGCTTAGCTTT 59.416 37.500 5.60 0.00 0.00 3.51
3459 3656 4.022849 GTGGTTGTTCTGATTGCTTAGCTT 60.023 41.667 5.60 0.00 0.00 3.74
3460 3657 3.503748 GTGGTTGTTCTGATTGCTTAGCT 59.496 43.478 5.60 0.00 0.00 3.32
3461 3658 3.253188 TGTGGTTGTTCTGATTGCTTAGC 59.747 43.478 0.00 0.00 0.00 3.09
3462 3659 5.633830 ATGTGGTTGTTCTGATTGCTTAG 57.366 39.130 0.00 0.00 0.00 2.18
3463 3660 6.403866 AAATGTGGTTGTTCTGATTGCTTA 57.596 33.333 0.00 0.00 0.00 3.09
3464 3661 4.942761 AATGTGGTTGTTCTGATTGCTT 57.057 36.364 0.00 0.00 0.00 3.91
3465 3662 4.942761 AAATGTGGTTGTTCTGATTGCT 57.057 36.364 0.00 0.00 0.00 3.91
3466 3663 5.989551 AAAAATGTGGTTGTTCTGATTGC 57.010 34.783 0.00 0.00 0.00 3.56
3500 3697 3.270027 TGGCAAGTCGGAAGATGTAATG 58.730 45.455 0.00 0.00 45.19 1.90
3510 3707 4.961637 CCATGATGGCAAGTCGGA 57.038 55.556 0.00 0.00 0.00 4.55
3522 3719 3.616343 AATGTATCAATGGGGCCATGA 57.384 42.857 4.39 7.15 36.68 3.07
3529 3727 6.284891 ACAACTGGAAAATGTATCAATGGG 57.715 37.500 0.00 0.00 0.00 4.00
3562 3761 5.406477 GGAAATTGCAAGAGACACCAAATTC 59.594 40.000 4.94 0.00 0.00 2.17
3573 3772 7.149569 TCAAGATACTTGGAAATTGCAAGAG 57.850 36.000 29.22 9.20 46.92 2.85
3623 3822 1.432807 ACCCATCCCACTGGAAACAAT 59.567 47.619 0.00 0.00 45.98 2.71
3695 3895 3.003480 GCTCCAAGTAAGCTGACGAAAT 58.997 45.455 0.00 0.00 36.80 2.17
3794 3995 4.335594 GTGTCCTGCAGTATGGGAAATAAC 59.664 45.833 13.81 0.00 35.86 1.89
3795 3996 4.227300 AGTGTCCTGCAGTATGGGAAATAA 59.773 41.667 13.81 0.00 35.86 1.40
3796 3997 3.780294 AGTGTCCTGCAGTATGGGAAATA 59.220 43.478 13.81 0.00 35.86 1.40
3801 4004 2.388735 TCTAGTGTCCTGCAGTATGGG 58.611 52.381 13.81 0.00 35.86 4.00
3804 4007 5.939764 TTGATTCTAGTGTCCTGCAGTAT 57.060 39.130 13.81 0.00 32.98 2.12
3856 4059 6.680810 TGATTTCCTGCAAACTGACATTAAG 58.319 36.000 0.00 0.00 0.00 1.85
3928 4196 9.304731 GACACCAACTCGTATATGTTTGTATAA 57.695 33.333 7.72 0.00 0.00 0.98
3988 4280 8.578151 GTTCAAATAATTAGGTGTGTGGGTAAA 58.422 33.333 0.00 0.00 0.00 2.01
4026 4318 1.205417 ACAACAAGCATTAGCATGGGC 59.795 47.619 0.00 0.00 43.41 5.36
4082 4374 2.203750 TGCCCCAGGGTGCAATTT 59.796 55.556 17.01 0.00 37.65 1.82
4083 4375 2.604382 GTGCCCCAGGGTGCAATT 60.604 61.111 20.04 0.00 39.57 2.32
4084 4376 4.702274 GGTGCCCCAGGGTGCAAT 62.702 66.667 20.04 0.00 39.57 3.56
4089 4492 3.966543 CGAAAGGTGCCCCAGGGT 61.967 66.667 4.22 0.00 37.65 4.34
4095 4498 4.133796 GCCATGCGAAAGGTGCCC 62.134 66.667 0.00 0.00 0.00 5.36
4122 4525 4.218635 TCTTCACAAGCACTACTAGTCTGG 59.781 45.833 0.00 0.00 0.00 3.86
4130 4533 4.624882 CAGAGACATCTTCACAAGCACTAC 59.375 45.833 0.00 0.00 31.64 2.73
4132 4535 3.323115 TCAGAGACATCTTCACAAGCACT 59.677 43.478 0.00 0.00 31.64 4.40
4133 4536 3.657634 TCAGAGACATCTTCACAAGCAC 58.342 45.455 0.00 0.00 31.64 4.40
4167 4570 1.335597 GGTACAAGCTCCCAAAAACGC 60.336 52.381 0.00 0.00 0.00 4.84
4170 4573 2.091555 ACCAGGTACAAGCTCCCAAAAA 60.092 45.455 0.00 0.00 0.00 1.94
4207 4612 3.481559 ACCCAGATCAGAAGAGGAGAA 57.518 47.619 0.00 0.00 0.00 2.87
4216 4621 3.724478 ACATGGTCTTACCCAGATCAGA 58.276 45.455 0.00 0.00 46.37 3.27
4256 4662 6.414109 CGAGTACCATAAAGTATCGACAAGTG 59.586 42.308 0.00 0.00 31.10 3.16
4376 4782 3.244353 CCATGTATTCGCAGATCCTCCTT 60.244 47.826 0.00 0.00 35.04 3.36
4404 4818 5.186409 ACAACTCTTCAATTTGGATGGATGG 59.814 40.000 0.00 0.00 0.00 3.51
4405 4819 6.276832 ACAACTCTTCAATTTGGATGGATG 57.723 37.500 0.00 0.00 0.00 3.51
4406 4820 7.405292 TCTACAACTCTTCAATTTGGATGGAT 58.595 34.615 0.00 0.00 0.00 3.41
4407 4821 6.778821 TCTACAACTCTTCAATTTGGATGGA 58.221 36.000 0.00 0.00 0.00 3.41
4417 4831 4.388485 TGCTTGCATCTACAACTCTTCAA 58.612 39.130 0.00 0.00 0.00 2.69
4441 4855 7.840342 ACACTAGACAAGCAAAGATATCTTG 57.160 36.000 18.61 13.15 41.99 3.02
4470 4884 5.163982 GGTCTTTCTAGCACGTATGAACAAC 60.164 44.000 0.00 0.00 0.00 3.32
4522 4946 6.634805 ACACTAGTGTAATGTCAATGGAGAG 58.365 40.000 26.91 0.00 42.90 3.20
4524 4948 6.893958 GACACTAGTGTAATGTCAATGGAG 57.106 41.667 27.98 0.00 45.05 3.86
4549 4973 9.673454 GAACGTTCCATAATGTAAGAAGTTTTT 57.327 29.630 17.68 0.00 33.61 1.94
4551 4975 8.287503 GTGAACGTTCCATAATGTAAGAAGTTT 58.712 33.333 24.78 0.00 33.61 2.66
4553 4977 7.117812 CAGTGAACGTTCCATAATGTAAGAAGT 59.882 37.037 24.78 2.14 33.61 3.01
4554 4978 7.117812 ACAGTGAACGTTCCATAATGTAAGAAG 59.882 37.037 24.78 1.83 33.61 2.85
4556 4980 6.460781 ACAGTGAACGTTCCATAATGTAAGA 58.539 36.000 24.78 0.00 33.61 2.10
4557 4981 6.721571 ACAGTGAACGTTCCATAATGTAAG 57.278 37.500 24.78 6.18 33.61 2.34
4558 4982 7.499321 AAACAGTGAACGTTCCATAATGTAA 57.501 32.000 24.78 0.26 33.61 2.41
4561 4985 8.450964 AGATAAAACAGTGAACGTTCCATAATG 58.549 33.333 24.78 17.49 0.00 1.90
4564 4988 7.156000 TCAGATAAAACAGTGAACGTTCCATA 58.844 34.615 24.78 4.16 0.00 2.74
4565 4989 5.995282 TCAGATAAAACAGTGAACGTTCCAT 59.005 36.000 24.78 10.96 0.00 3.41
4566 4990 5.361427 TCAGATAAAACAGTGAACGTTCCA 58.639 37.500 24.78 10.71 0.00 3.53
4568 4992 8.709646 AGTATTCAGATAAAACAGTGAACGTTC 58.290 33.333 21.42 21.42 31.94 3.95
4569 4993 8.495949 CAGTATTCAGATAAAACAGTGAACGTT 58.504 33.333 0.00 0.00 31.94 3.99
4570 4994 7.870954 TCAGTATTCAGATAAAACAGTGAACGT 59.129 33.333 0.00 0.00 31.94 3.99
4571 4995 8.239681 TCAGTATTCAGATAAAACAGTGAACG 57.760 34.615 0.00 0.00 31.94 3.95
4610 5150 8.681486 TCATACCCTGATGAACAATATCTTTG 57.319 34.615 0.00 0.00 32.84 2.77
4722 5630 3.554129 GCATTAAACACCCCTCAAACACC 60.554 47.826 0.00 0.00 0.00 4.16
4723 5631 3.068873 TGCATTAAACACCCCTCAAACAC 59.931 43.478 0.00 0.00 0.00 3.32
4724 5632 3.068873 GTGCATTAAACACCCCTCAAACA 59.931 43.478 0.00 0.00 31.67 2.83
4740 5648 1.283029 ACATCTACAGCCAGGTGCATT 59.717 47.619 0.00 0.00 44.83 3.56
4742 5650 0.692476 AACATCTACAGCCAGGTGCA 59.308 50.000 0.00 0.00 44.83 4.57
4745 5653 3.838317 TCTAACAACATCTACAGCCAGGT 59.162 43.478 0.00 0.00 0.00 4.00
4747 5655 6.801539 TTTTCTAACAACATCTACAGCCAG 57.198 37.500 0.00 0.00 0.00 4.85
4749 5657 8.515414 AGAAATTTTCTAACAACATCTACAGCC 58.485 33.333 9.92 0.00 38.49 4.85
4757 5665 9.665719 ACCAAAACAGAAATTTTCTAACAACAT 57.334 25.926 11.21 0.00 38.11 2.71
4758 5666 8.930760 CACCAAAACAGAAATTTTCTAACAACA 58.069 29.630 11.21 0.00 38.11 3.33
4759 5667 9.145865 TCACCAAAACAGAAATTTTCTAACAAC 57.854 29.630 11.21 0.00 38.11 3.32
4760 5668 9.883142 ATCACCAAAACAGAAATTTTCTAACAA 57.117 25.926 11.21 0.00 38.11 2.83
4776 5684 6.071952 TGCCTGATCTTTTCTATCACCAAAAC 60.072 38.462 0.00 0.00 30.38 2.43
4793 5701 3.568007 TGGTAAACACAACTTGCCTGATC 59.432 43.478 0.00 0.00 30.51 2.92
4799 5707 4.314740 TGGAATGGTAAACACAACTTGC 57.685 40.909 0.00 0.00 0.00 4.01
4863 5794 8.559222 TTGTGCGATGCAATAATACAATTAAG 57.441 30.769 0.00 0.00 41.47 1.85
4866 5797 7.824704 TTTTGTGCGATGCAATAATACAATT 57.175 28.000 0.00 0.00 41.47 2.32
4871 5802 6.198778 GCTGAATTTTGTGCGATGCAATAATA 59.801 34.615 0.00 0.00 41.47 0.98
4905 5836 0.689080 TCAAGGCCCCAACTGCAAAA 60.689 50.000 0.00 0.00 0.00 2.44
4939 5870 3.121030 AATGCGCTGTCGGCTCAC 61.121 61.111 9.73 0.00 38.54 3.51
4941 5872 4.527157 GCAATGCGCTGTCGGCTC 62.527 66.667 9.73 0.00 39.13 4.70
4944 5875 3.869272 GAGGCAATGCGCTGTCGG 61.869 66.667 9.73 0.00 41.91 4.79
4945 5876 2.186350 TTTGAGGCAATGCGCTGTCG 62.186 55.000 9.73 0.00 41.91 4.35
4946 5877 0.039256 TTTTGAGGCAATGCGCTGTC 60.039 50.000 9.73 0.00 41.91 3.51
4947 5878 0.388659 TTTTTGAGGCAATGCGCTGT 59.611 45.000 9.73 0.00 41.91 4.40
4948 5879 3.198187 TTTTTGAGGCAATGCGCTG 57.802 47.368 9.73 0.00 41.91 5.18
4970 5901 1.299089 GCGCCGTCAGCTTGTTTTT 60.299 52.632 0.00 0.00 40.39 1.94
4971 5902 2.331451 GCGCCGTCAGCTTGTTTT 59.669 55.556 0.00 0.00 40.39 2.43
4972 5903 2.899838 TGCGCCGTCAGCTTGTTT 60.900 55.556 4.18 0.00 40.39 2.83
4973 5904 3.649986 GTGCGCCGTCAGCTTGTT 61.650 61.111 4.18 0.00 40.39 2.83
4979 5910 2.954753 GAAAGTGGTGCGCCGTCAG 61.955 63.158 12.58 0.00 37.67 3.51
4980 5911 2.970324 GAAAGTGGTGCGCCGTCA 60.970 61.111 12.58 0.00 37.67 4.35
4981 5912 2.665185 AGAAAGTGGTGCGCCGTC 60.665 61.111 12.58 7.51 37.67 4.79
4982 5913 2.972505 CAGAAAGTGGTGCGCCGT 60.973 61.111 12.58 0.00 37.67 5.68
4983 5914 2.058829 AAACAGAAAGTGGTGCGCCG 62.059 55.000 12.58 0.00 37.67 6.46
4984 5915 0.317854 GAAACAGAAAGTGGTGCGCC 60.318 55.000 10.11 10.11 0.00 6.53
4985 5916 0.317854 GGAAACAGAAAGTGGTGCGC 60.318 55.000 0.00 0.00 0.00 6.09
4986 5917 0.041312 CGGAAACAGAAAGTGGTGCG 60.041 55.000 0.00 0.00 0.00 5.34
4987 5918 0.310854 CCGGAAACAGAAAGTGGTGC 59.689 55.000 0.00 0.00 0.00 5.01
4988 5919 0.310854 GCCGGAAACAGAAAGTGGTG 59.689 55.000 5.05 0.00 0.00 4.17
4989 5920 1.164041 CGCCGGAAACAGAAAGTGGT 61.164 55.000 5.05 0.00 0.00 4.16
4990 5921 1.574428 CGCCGGAAACAGAAAGTGG 59.426 57.895 5.05 0.00 0.00 4.00
4991 5922 1.574428 CCGCCGGAAACAGAAAGTG 59.426 57.895 5.05 0.00 0.00 3.16
4992 5923 2.258726 GCCGCCGGAAACAGAAAGT 61.259 57.895 7.68 0.00 0.00 2.66
4993 5924 2.561373 GCCGCCGGAAACAGAAAG 59.439 61.111 7.68 0.00 0.00 2.62
4994 5925 3.350612 CGCCGCCGGAAACAGAAA 61.351 61.111 7.68 0.00 0.00 2.52
4995 5926 4.612412 ACGCCGCCGGAAACAGAA 62.612 61.111 7.68 0.00 39.22 3.02
4996 5927 4.612412 AACGCCGCCGGAAACAGA 62.612 61.111 7.68 0.00 39.22 3.41
4997 5928 4.383602 CAACGCCGCCGGAAACAG 62.384 66.667 7.68 0.00 39.22 3.16
5034 5965 4.699522 AAGGGAGTTCACGCCGCC 62.700 66.667 0.00 0.00 36.62 6.13
5035 5966 2.668550 AAAGGGAGTTCACGCCGC 60.669 61.111 0.00 0.00 36.62 6.53
5036 5967 1.291877 CTGAAAGGGAGTTCACGCCG 61.292 60.000 0.00 0.00 36.62 6.46
5037 5968 2.544726 CTGAAAGGGAGTTCACGCC 58.455 57.895 0.00 0.00 33.92 5.68
5049 5980 2.866028 GCTCGTGCTGCCTGAAAG 59.134 61.111 1.41 0.00 36.03 2.62
5050 5981 3.043713 CGCTCGTGCTGCCTGAAA 61.044 61.111 7.97 0.00 36.97 2.69
5074 6005 4.831307 ACTAAGACGCGCCGCTCG 62.831 66.667 5.73 0.23 42.12 5.03
5075 6006 3.248171 CACTAAGACGCGCCGCTC 61.248 66.667 5.73 3.85 0.00 5.03
5084 6015 4.789075 TCGCCGCCGCACTAAGAC 62.789 66.667 0.00 0.00 34.03 3.01
5085 6016 3.365291 ATTCGCCGCCGCACTAAGA 62.365 57.895 0.00 0.00 34.03 2.10
5086 6017 2.871427 GATTCGCCGCCGCACTAAG 61.871 63.158 0.00 0.00 34.03 2.18
5087 6018 2.888534 GATTCGCCGCCGCACTAA 60.889 61.111 0.00 0.00 34.03 2.24
5088 6019 4.884257 GGATTCGCCGCCGCACTA 62.884 66.667 0.00 0.00 34.03 2.74
5441 6372 0.589229 CGTGCCACTAGATCGACGTC 60.589 60.000 5.18 5.18 0.00 4.34
5442 6373 1.428219 CGTGCCACTAGATCGACGT 59.572 57.895 0.00 0.00 0.00 4.34
5443 6374 1.298413 CCGTGCCACTAGATCGACG 60.298 63.158 0.00 0.00 0.00 5.12
5444 6375 1.589196 GCCGTGCCACTAGATCGAC 60.589 63.158 0.00 0.00 0.00 4.20
5445 6376 2.805546 GCCGTGCCACTAGATCGA 59.194 61.111 0.00 0.00 0.00 3.59
5446 6377 2.655364 CGCCGTGCCACTAGATCG 60.655 66.667 0.00 0.00 0.00 3.69
5447 6378 2.279517 CCGCCGTGCCACTAGATC 60.280 66.667 0.00 0.00 0.00 2.75
5448 6379 3.849951 CCCGCCGTGCCACTAGAT 61.850 66.667 0.00 0.00 0.00 1.98
5460 6391 4.699522 AGGTCTCAAACGCCCGCC 62.700 66.667 0.00 0.00 0.00 6.13
5461 6392 3.119096 GAGGTCTCAAACGCCCGC 61.119 66.667 0.00 0.00 0.00 6.13
5462 6393 2.809601 CGAGGTCTCAAACGCCCG 60.810 66.667 0.00 0.00 0.00 6.13
5463 6394 3.119096 GCGAGGTCTCAAACGCCC 61.119 66.667 0.00 0.00 44.27 6.13
5466 6397 1.361668 CCCATGCGAGGTCTCAAACG 61.362 60.000 0.00 0.00 0.00 3.60
5467 6398 1.026718 CCCCATGCGAGGTCTCAAAC 61.027 60.000 0.00 0.00 0.00 2.93
5468 6399 1.299648 CCCCATGCGAGGTCTCAAA 59.700 57.895 0.00 0.00 0.00 2.69
5469 6400 1.918293 ACCCCATGCGAGGTCTCAA 60.918 57.895 0.00 0.00 0.00 3.02
5470 6401 2.284625 ACCCCATGCGAGGTCTCA 60.285 61.111 0.00 0.00 0.00 3.27
5474 6405 0.609131 CAAAAGACCCCATGCGAGGT 60.609 55.000 0.32 0.32 39.75 3.85
5475 6406 0.609131 ACAAAAGACCCCATGCGAGG 60.609 55.000 0.00 0.00 0.00 4.63
5476 6407 0.804989 GACAAAAGACCCCATGCGAG 59.195 55.000 0.00 0.00 0.00 5.03
5477 6408 0.953471 CGACAAAAGACCCCATGCGA 60.953 55.000 0.00 0.00 0.00 5.10
5478 6409 1.501741 CGACAAAAGACCCCATGCG 59.498 57.895 0.00 0.00 0.00 4.73
5479 6410 1.883021 CCGACAAAAGACCCCATGC 59.117 57.895 0.00 0.00 0.00 4.06
5480 6411 1.883021 GCCGACAAAAGACCCCATG 59.117 57.895 0.00 0.00 0.00 3.66
5481 6412 1.674322 CGCCGACAAAAGACCCCAT 60.674 57.895 0.00 0.00 0.00 4.00
5482 6413 2.281208 CGCCGACAAAAGACCCCA 60.281 61.111 0.00 0.00 0.00 4.96
5483 6414 2.791501 TAGCGCCGACAAAAGACCCC 62.792 60.000 2.29 0.00 0.00 4.95
5484 6415 1.375013 TAGCGCCGACAAAAGACCC 60.375 57.895 2.29 0.00 0.00 4.46
5485 6416 0.669625 AGTAGCGCCGACAAAAGACC 60.670 55.000 2.29 0.00 0.00 3.85
5486 6417 0.714439 GAGTAGCGCCGACAAAAGAC 59.286 55.000 2.29 0.00 0.00 3.01
5487 6418 0.601558 AGAGTAGCGCCGACAAAAGA 59.398 50.000 2.29 0.00 0.00 2.52
5488 6419 0.716108 CAGAGTAGCGCCGACAAAAG 59.284 55.000 2.29 0.00 0.00 2.27
5489 6420 0.669318 CCAGAGTAGCGCCGACAAAA 60.669 55.000 2.29 0.00 0.00 2.44
5490 6421 1.080093 CCAGAGTAGCGCCGACAAA 60.080 57.895 2.29 0.00 0.00 2.83
5491 6422 2.571757 CCAGAGTAGCGCCGACAA 59.428 61.111 2.29 0.00 0.00 3.18
5492 6423 4.129737 GCCAGAGTAGCGCCGACA 62.130 66.667 2.29 0.00 0.00 4.35
5493 6424 4.874977 GGCCAGAGTAGCGCCGAC 62.875 72.222 2.29 2.03 31.92 4.79
5500 6431 3.854669 CTGCCGGGGCCAGAGTAG 61.855 72.222 4.39 0.68 41.09 2.57
5512 6443 4.162690 GTAGGTCCTGGGCTGCCG 62.163 72.222 13.40 0.00 0.00 5.69
5513 6444 1.054406 TATGTAGGTCCTGGGCTGCC 61.054 60.000 11.05 11.05 0.00 4.85
5514 6445 1.059913 ATATGTAGGTCCTGGGCTGC 58.940 55.000 0.00 0.00 0.00 5.25
5515 6446 2.039084 GGAATATGTAGGTCCTGGGCTG 59.961 54.545 0.00 0.00 0.00 4.85
5516 6447 2.339769 GGAATATGTAGGTCCTGGGCT 58.660 52.381 0.00 0.00 0.00 5.19
5517 6448 1.002087 CGGAATATGTAGGTCCTGGGC 59.998 57.143 0.00 0.00 0.00 5.36
5518 6449 1.623811 CCGGAATATGTAGGTCCTGGG 59.376 57.143 0.00 0.00 0.00 4.45
5519 6450 1.002087 GCCGGAATATGTAGGTCCTGG 59.998 57.143 5.05 0.00 0.00 4.45
5520 6451 1.336887 CGCCGGAATATGTAGGTCCTG 60.337 57.143 5.05 0.00 0.00 3.86
5521 6452 0.966920 CGCCGGAATATGTAGGTCCT 59.033 55.000 5.05 0.00 0.00 3.85
5522 6453 0.677842 ACGCCGGAATATGTAGGTCC 59.322 55.000 5.05 0.00 0.00 4.46
5523 6454 1.612463 AGACGCCGGAATATGTAGGTC 59.388 52.381 5.05 0.00 0.00 3.85
5524 6455 1.700955 AGACGCCGGAATATGTAGGT 58.299 50.000 5.05 0.00 0.00 3.08
5525 6456 3.428999 CCATAGACGCCGGAATATGTAGG 60.429 52.174 5.05 0.00 0.00 3.18
5526 6457 3.192844 ACCATAGACGCCGGAATATGTAG 59.807 47.826 5.05 0.00 0.00 2.74
5527 6458 3.159472 ACCATAGACGCCGGAATATGTA 58.841 45.455 5.05 0.00 0.00 2.29
5528 6459 1.968493 ACCATAGACGCCGGAATATGT 59.032 47.619 5.05 0.00 0.00 2.29
5529 6460 2.743636 ACCATAGACGCCGGAATATG 57.256 50.000 5.05 7.14 0.00 1.78
5530 6461 3.399330 CAAACCATAGACGCCGGAATAT 58.601 45.455 5.05 0.00 0.00 1.28
5531 6462 2.828877 CAAACCATAGACGCCGGAATA 58.171 47.619 5.05 0.00 0.00 1.75
5532 6463 1.663695 CAAACCATAGACGCCGGAAT 58.336 50.000 5.05 0.00 0.00 3.01
5533 6464 1.022451 GCAAACCATAGACGCCGGAA 61.022 55.000 5.05 0.00 0.00 4.30
5534 6465 1.448893 GCAAACCATAGACGCCGGA 60.449 57.895 5.05 0.00 0.00 5.14
5535 6466 2.469516 GGCAAACCATAGACGCCGG 61.470 63.158 0.00 0.00 35.26 6.13
5536 6467 1.743623 TGGCAAACCATAGACGCCG 60.744 57.895 0.00 0.00 46.02 6.46
5537 6468 4.312052 TGGCAAACCATAGACGCC 57.688 55.556 0.00 0.00 42.67 5.68
5545 6476 1.187087 AAAAACGACCTGGCAAACCA 58.813 45.000 0.00 0.00 46.51 3.67
5577 6508 3.139029 GGATGAACCGGTCACTGAC 57.861 57.895 8.04 0.00 39.72 3.51
5588 6519 4.875713 ATGCCCGGGCGGATGAAC 62.876 66.667 39.00 12.45 45.51 3.18
5589 6520 3.653664 AAATGCCCGGGCGGATGAA 62.654 57.895 39.00 22.45 45.51 2.57
5590 6521 4.122149 AAATGCCCGGGCGGATGA 62.122 61.111 39.00 23.27 45.51 2.92
5591 6522 3.903282 CAAATGCCCGGGCGGATG 61.903 66.667 39.00 30.76 45.51 3.51
5592 6523 4.122149 TCAAATGCCCGGGCGGAT 62.122 61.111 39.00 26.11 45.51 4.18
5593 6524 4.794648 CTCAAATGCCCGGGCGGA 62.795 66.667 39.00 29.59 45.51 5.54
5597 6528 4.060667 ACCCCTCAAATGCCCGGG 62.061 66.667 19.09 19.09 39.85 5.73
5598 6529 2.755469 CACCCCTCAAATGCCCGG 60.755 66.667 0.00 0.00 0.00 5.73
5599 6530 1.184970 AAACACCCCTCAAATGCCCG 61.185 55.000 0.00 0.00 0.00 6.13
5600 6531 1.931635 TAAACACCCCTCAAATGCCC 58.068 50.000 0.00 0.00 0.00 5.36
5601 6532 2.233676 CCTTAAACACCCCTCAAATGCC 59.766 50.000 0.00 0.00 0.00 4.40
5602 6533 2.353704 GCCTTAAACACCCCTCAAATGC 60.354 50.000 0.00 0.00 0.00 3.56
5603 6534 2.896685 TGCCTTAAACACCCCTCAAATG 59.103 45.455 0.00 0.00 0.00 2.32
5604 6535 2.897326 GTGCCTTAAACACCCCTCAAAT 59.103 45.455 0.00 0.00 31.67 2.32
5605 6536 2.312390 GTGCCTTAAACACCCCTCAAA 58.688 47.619 0.00 0.00 31.67 2.69
5606 6537 1.989706 GTGCCTTAAACACCCCTCAA 58.010 50.000 0.00 0.00 31.67 3.02
5607 6538 3.737702 GTGCCTTAAACACCCCTCA 57.262 52.632 0.00 0.00 31.67 3.86
5613 6544 0.598065 CAGCCAGGTGCCTTAAACAC 59.402 55.000 0.61 0.61 42.71 3.32
5614 6545 0.184933 ACAGCCAGGTGCCTTAAACA 59.815 50.000 0.00 0.00 42.71 2.83
5615 6546 2.084546 CTACAGCCAGGTGCCTTAAAC 58.915 52.381 0.00 0.00 42.71 2.01
5616 6547 1.982226 TCTACAGCCAGGTGCCTTAAA 59.018 47.619 0.00 0.00 42.71 1.52
5617 6548 1.651737 TCTACAGCCAGGTGCCTTAA 58.348 50.000 0.00 0.00 42.71 1.85
5618 6549 1.486310 CATCTACAGCCAGGTGCCTTA 59.514 52.381 0.00 0.00 42.71 2.69
5619 6550 0.254178 CATCTACAGCCAGGTGCCTT 59.746 55.000 0.00 0.00 42.71 4.35
5620 6551 1.910722 CATCTACAGCCAGGTGCCT 59.089 57.895 0.00 0.00 42.71 4.75
5621 6552 1.821332 GCATCTACAGCCAGGTGCC 60.821 63.158 4.82 0.00 45.24 5.01
5622 6553 3.819188 GCATCTACAGCCAGGTGC 58.181 61.111 0.58 0.58 44.87 5.01
5628 6559 9.013937 AGAAATTTTCTAACGGCATCTACAGCC 62.014 40.741 9.92 0.00 42.76 4.85
5629 6560 5.485662 AATTTTCTAACGGCATCTACAGC 57.514 39.130 0.00 0.00 0.00 4.40
5630 6561 7.308782 AGAAATTTTCTAACGGCATCTACAG 57.691 36.000 9.92 0.00 38.49 2.74
5631 6562 8.958119 ATAGAAATTTTCTAACGGCATCTACA 57.042 30.769 19.82 0.00 44.75 2.74
5634 6565 9.573133 CAAAATAGAAATTTTCTAACGGCATCT 57.427 29.630 19.82 1.84 44.75 2.90
5635 6566 8.807581 CCAAAATAGAAATTTTCTAACGGCATC 58.192 33.333 19.82 0.00 44.75 3.91
5636 6567 8.527810 TCCAAAATAGAAATTTTCTAACGGCAT 58.472 29.630 19.82 3.98 44.75 4.40
5637 6568 7.887381 TCCAAAATAGAAATTTTCTAACGGCA 58.113 30.769 19.82 1.86 44.75 5.69
5638 6569 8.241367 TCTCCAAAATAGAAATTTTCTAACGGC 58.759 33.333 19.82 0.00 44.75 5.68
5652 6583 9.553064 GCTGATCTTTTCTATCTCCAAAATAGA 57.447 33.333 0.00 0.00 34.66 1.98
5653 6584 9.558396 AGCTGATCTTTTCTATCTCCAAAATAG 57.442 33.333 0.00 0.00 0.00 1.73
5655 6586 9.336171 GTAGCTGATCTTTTCTATCTCCAAAAT 57.664 33.333 0.00 0.00 0.00 1.82
5656 6587 7.492669 CGTAGCTGATCTTTTCTATCTCCAAAA 59.507 37.037 0.00 0.00 0.00 2.44
5657 6588 6.980978 CGTAGCTGATCTTTTCTATCTCCAAA 59.019 38.462 0.00 0.00 0.00 3.28
5658 6589 6.096987 ACGTAGCTGATCTTTTCTATCTCCAA 59.903 38.462 0.00 0.00 0.00 3.53
5659 6590 5.594725 ACGTAGCTGATCTTTTCTATCTCCA 59.405 40.000 0.00 0.00 0.00 3.86
5660 6591 6.079424 ACGTAGCTGATCTTTTCTATCTCC 57.921 41.667 0.00 0.00 0.00 3.71
5661 6592 6.975772 ACAACGTAGCTGATCTTTTCTATCTC 59.024 38.462 0.00 0.00 0.00 2.75
5662 6593 6.754209 CACAACGTAGCTGATCTTTTCTATCT 59.246 38.462 0.00 0.00 0.00 1.98
5663 6594 6.531948 ACACAACGTAGCTGATCTTTTCTATC 59.468 38.462 0.00 0.00 0.00 2.08
5664 6595 6.398918 ACACAACGTAGCTGATCTTTTCTAT 58.601 36.000 0.00 0.00 0.00 1.98
5665 6596 5.779922 ACACAACGTAGCTGATCTTTTCTA 58.220 37.500 0.00 0.00 0.00 2.10
5666 6597 4.632153 ACACAACGTAGCTGATCTTTTCT 58.368 39.130 0.00 0.00 0.00 2.52
5667 6598 4.992381 ACACAACGTAGCTGATCTTTTC 57.008 40.909 0.00 0.00 0.00 2.29
5668 6599 5.751243 AAACACAACGTAGCTGATCTTTT 57.249 34.783 0.00 0.00 0.00 2.27
5669 6600 5.178809 GGTAAACACAACGTAGCTGATCTTT 59.821 40.000 0.00 0.00 0.00 2.52
5670 6601 4.689345 GGTAAACACAACGTAGCTGATCTT 59.311 41.667 0.00 0.00 0.00 2.40
5671 6602 4.243270 GGTAAACACAACGTAGCTGATCT 58.757 43.478 0.00 0.00 0.00 2.75
5672 6603 3.991773 TGGTAAACACAACGTAGCTGATC 59.008 43.478 0.00 0.00 0.00 2.92
5673 6604 3.997762 TGGTAAACACAACGTAGCTGAT 58.002 40.909 0.00 0.00 0.00 2.90
5674 6605 3.455990 TGGTAAACACAACGTAGCTGA 57.544 42.857 0.00 0.00 0.00 4.26
5675 6606 4.378046 GGAATGGTAAACACAACGTAGCTG 60.378 45.833 0.00 0.00 0.00 4.24
5676 6607 3.749609 GGAATGGTAAACACAACGTAGCT 59.250 43.478 0.00 0.00 0.00 3.32
5677 6608 3.499157 TGGAATGGTAAACACAACGTAGC 59.501 43.478 0.00 0.00 0.00 3.58
5678 6609 5.873179 ATGGAATGGTAAACACAACGTAG 57.127 39.130 0.00 0.00 0.00 3.51
5679 6610 7.228108 TGTTTATGGAATGGTAAACACAACGTA 59.772 33.333 6.60 0.00 42.59 3.57
5680 6611 6.039493 TGTTTATGGAATGGTAAACACAACGT 59.961 34.615 6.60 0.00 42.59 3.99
5681 6612 6.439599 TGTTTATGGAATGGTAAACACAACG 58.560 36.000 6.60 0.00 42.59 4.10
5682 6613 8.825667 ATTGTTTATGGAATGGTAAACACAAC 57.174 30.769 9.46 0.00 45.34 3.32
5683 6614 9.838339 AAATTGTTTATGGAATGGTAAACACAA 57.162 25.926 9.46 0.00 45.34 3.33
5684 6615 9.838339 AAAATTGTTTATGGAATGGTAAACACA 57.162 25.926 9.46 3.93 45.34 3.72
5714 6645 9.855021 GTCAAAAACAGTTAGCCATATTACATT 57.145 29.630 0.00 0.00 0.00 2.71
5715 6646 9.243105 AGTCAAAAACAGTTAGCCATATTACAT 57.757 29.630 0.00 0.00 0.00 2.29
5716 6647 8.630054 AGTCAAAAACAGTTAGCCATATTACA 57.370 30.769 0.00 0.00 0.00 2.41
5721 6652 9.906660 CAATTAAGTCAAAAACAGTTAGCCATA 57.093 29.630 0.00 0.00 0.00 2.74
5722 6653 8.421002 ACAATTAAGTCAAAAACAGTTAGCCAT 58.579 29.630 0.00 0.00 0.00 4.40
5723 6654 7.777095 ACAATTAAGTCAAAAACAGTTAGCCA 58.223 30.769 0.00 0.00 0.00 4.75
5724 6655 9.908152 ATACAATTAAGTCAAAAACAGTTAGCC 57.092 29.630 0.00 0.00 0.00 3.93
5735 6666 9.232082 GCGATGCAATAATACAATTAAGTCAAA 57.768 29.630 0.00 0.00 0.00 2.69
5736 6667 8.401709 TGCGATGCAATAATACAATTAAGTCAA 58.598 29.630 0.00 0.00 34.76 3.18
5737 6668 7.855409 GTGCGATGCAATAATACAATTAAGTCA 59.145 33.333 0.00 0.00 41.47 3.41
5738 6669 7.855409 TGTGCGATGCAATAATACAATTAAGTC 59.145 33.333 0.00 0.00 41.47 3.01
5739 6670 7.702386 TGTGCGATGCAATAATACAATTAAGT 58.298 30.769 0.00 0.00 41.47 2.24
5740 6671 8.559222 TTGTGCGATGCAATAATACAATTAAG 57.441 30.769 0.00 0.00 41.47 1.85
5741 6672 8.917415 TTTGTGCGATGCAATAATACAATTAA 57.083 26.923 0.00 0.00 41.47 1.40
5742 6673 8.802856 GTTTTGTGCGATGCAATAATACAATTA 58.197 29.630 0.00 0.00 41.47 1.40
5743 6674 7.545265 AGTTTTGTGCGATGCAATAATACAATT 59.455 29.630 0.00 0.00 41.47 2.32
5744 6675 7.035004 AGTTTTGTGCGATGCAATAATACAAT 58.965 30.769 0.00 0.00 41.47 2.71
5745 6676 6.385843 AGTTTTGTGCGATGCAATAATACAA 58.614 32.000 0.00 0.00 41.47 2.41
5746 6677 5.948588 AGTTTTGTGCGATGCAATAATACA 58.051 33.333 0.00 0.00 41.47 2.29
5747 6678 6.027131 TGAGTTTTGTGCGATGCAATAATAC 58.973 36.000 0.00 0.00 41.47 1.89
5748 6679 6.188400 TGAGTTTTGTGCGATGCAATAATA 57.812 33.333 0.00 0.00 41.47 0.98
5749 6680 5.058149 TGAGTTTTGTGCGATGCAATAAT 57.942 34.783 0.00 0.00 41.47 1.28
5750 6681 4.475028 CTGAGTTTTGTGCGATGCAATAA 58.525 39.130 0.00 0.00 41.47 1.40
5751 6682 3.670359 GCTGAGTTTTGTGCGATGCAATA 60.670 43.478 0.00 0.00 41.47 1.90
5752 6683 2.923605 GCTGAGTTTTGTGCGATGCAAT 60.924 45.455 0.00 0.00 41.47 3.56
5753 6684 1.600164 GCTGAGTTTTGTGCGATGCAA 60.600 47.619 0.00 0.00 41.47 4.08
5754 6685 0.040157 GCTGAGTTTTGTGCGATGCA 60.040 50.000 0.00 0.00 35.60 3.96
5755 6686 2.716988 GCTGAGTTTTGTGCGATGC 58.283 52.632 0.00 0.00 0.00 3.91
5760 6691 1.664016 CCATCACGCTGAGTTTTGTGC 60.664 52.381 0.00 0.00 32.48 4.57
5761 6692 1.069022 CCCATCACGCTGAGTTTTGTG 60.069 52.381 0.00 0.00 0.00 3.33
5762 6693 1.238439 CCCATCACGCTGAGTTTTGT 58.762 50.000 0.00 0.00 0.00 2.83
5763 6694 0.109597 GCCCATCACGCTGAGTTTTG 60.110 55.000 0.00 0.00 0.00 2.44
5764 6695 0.250901 AGCCCATCACGCTGAGTTTT 60.251 50.000 0.00 0.00 34.56 2.43
5765 6696 0.250901 AAGCCCATCACGCTGAGTTT 60.251 50.000 0.00 0.00 36.47 2.66
5766 6697 0.250901 AAAGCCCATCACGCTGAGTT 60.251 50.000 0.00 0.00 36.47 3.01
5767 6698 0.957395 CAAAGCCCATCACGCTGAGT 60.957 55.000 0.00 0.00 36.47 3.41
5768 6699 1.798735 CAAAGCCCATCACGCTGAG 59.201 57.895 0.00 0.00 36.47 3.35
5769 6700 2.334946 GCAAAGCCCATCACGCTGA 61.335 57.895 0.00 0.00 36.47 4.26
5770 6701 2.180017 GCAAAGCCCATCACGCTG 59.820 61.111 0.00 0.00 36.47 5.18
5771 6702 2.282391 TGCAAAGCCCATCACGCT 60.282 55.556 0.00 0.00 38.53 5.07
5772 6703 2.146073 AACTGCAAAGCCCATCACGC 62.146 55.000 0.00 0.00 0.00 5.34
5773 6704 0.387622 CAACTGCAAAGCCCATCACG 60.388 55.000 0.00 0.00 0.00 4.35
5774 6705 0.037975 CCAACTGCAAAGCCCATCAC 60.038 55.000 0.00 0.00 0.00 3.06
5775 6706 1.186917 CCCAACTGCAAAGCCCATCA 61.187 55.000 0.00 0.00 0.00 3.07
5776 6707 1.593265 CCCAACTGCAAAGCCCATC 59.407 57.895 0.00 0.00 0.00 3.51
5777 6708 1.914764 CCCCAACTGCAAAGCCCAT 60.915 57.895 0.00 0.00 0.00 4.00
5778 6709 2.523902 CCCCAACTGCAAAGCCCA 60.524 61.111 0.00 0.00 0.00 5.36
5779 6710 4.007644 GCCCCAACTGCAAAGCCC 62.008 66.667 0.00 0.00 0.00 5.19
5780 6711 4.007644 GGCCCCAACTGCAAAGCC 62.008 66.667 0.00 0.00 0.00 4.35
5781 6712 2.510551 AAGGCCCCAACTGCAAAGC 61.511 57.895 0.00 0.00 0.00 3.51
5782 6713 1.114722 TCAAGGCCCCAACTGCAAAG 61.115 55.000 0.00 0.00 0.00 2.77
5783 6714 1.075674 TCAAGGCCCCAACTGCAAA 60.076 52.632 0.00 0.00 0.00 3.68
5784 6715 1.531365 CTCAAGGCCCCAACTGCAA 60.531 57.895 0.00 0.00 0.00 4.08
5785 6716 2.115910 CTCAAGGCCCCAACTGCA 59.884 61.111 0.00 0.00 0.00 4.41
5786 6717 2.677875 CCTCAAGGCCCCAACTGC 60.678 66.667 0.00 0.00 0.00 4.40
5796 6727 2.034124 CATGGTAATTGGGCCTCAAGG 58.966 52.381 4.53 0.00 38.95 3.61
5797 6728 2.428171 CACATGGTAATTGGGCCTCAAG 59.572 50.000 4.53 0.00 38.95 3.02
5798 6729 2.455557 CACATGGTAATTGGGCCTCAA 58.544 47.619 4.53 5.84 40.01 3.02
5799 6730 1.341877 CCACATGGTAATTGGGCCTCA 60.342 52.381 4.53 0.00 0.00 3.86
5800 6731 1.402787 CCACATGGTAATTGGGCCTC 58.597 55.000 4.53 0.00 0.00 4.70
5801 6732 0.687427 GCCACATGGTAATTGGGCCT 60.687 55.000 4.53 0.00 37.57 5.19
5802 6733 1.822615 GCCACATGGTAATTGGGCC 59.177 57.895 0.00 0.00 37.57 5.80
5803 6734 1.034838 TCGCCACATGGTAATTGGGC 61.035 55.000 0.00 0.00 37.57 5.36
5804 6735 1.024271 CTCGCCACATGGTAATTGGG 58.976 55.000 0.00 0.00 37.57 4.12
5805 6736 1.750193 ACTCGCCACATGGTAATTGG 58.250 50.000 0.00 0.00 37.57 3.16
5806 6737 2.487762 ACAACTCGCCACATGGTAATTG 59.512 45.455 0.00 2.91 37.57 2.32
5807 6738 2.790433 ACAACTCGCCACATGGTAATT 58.210 42.857 0.00 0.00 37.57 1.40
5808 6739 2.489938 ACAACTCGCCACATGGTAAT 57.510 45.000 0.00 0.00 37.57 1.89
5809 6740 2.264005 AACAACTCGCCACATGGTAA 57.736 45.000 0.00 0.00 37.57 2.85
5810 6741 1.876799 CAAACAACTCGCCACATGGTA 59.123 47.619 0.00 0.00 37.57 3.25
5811 6742 0.667993 CAAACAACTCGCCACATGGT 59.332 50.000 0.00 0.00 37.57 3.55
5812 6743 0.667993 ACAAACAACTCGCCACATGG 59.332 50.000 0.00 0.00 38.53 3.66
5813 6744 2.490328 AACAAACAACTCGCCACATG 57.510 45.000 0.00 0.00 0.00 3.21
5814 6745 3.243267 GGTTAACAAACAACTCGCCACAT 60.243 43.478 8.10 0.00 0.00 3.21
5815 6746 2.097791 GGTTAACAAACAACTCGCCACA 59.902 45.455 8.10 0.00 0.00 4.17
5816 6747 2.542205 GGGTTAACAAACAACTCGCCAC 60.542 50.000 8.10 0.00 0.00 5.01
5817 6748 1.677052 GGGTTAACAAACAACTCGCCA 59.323 47.619 8.10 0.00 0.00 5.69
5818 6749 1.951602 AGGGTTAACAAACAACTCGCC 59.048 47.619 8.10 0.00 31.39 5.54
5819 6750 4.719040 CATAGGGTTAACAAACAACTCGC 58.281 43.478 8.10 0.00 31.39 5.03
5820 6751 4.214545 TGCATAGGGTTAACAAACAACTCG 59.785 41.667 8.10 0.00 31.39 4.18
5832 6763 1.352622 CCTGGGCCTGCATAGGGTTA 61.353 60.000 4.53 0.00 44.75 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.