Multiple sequence alignment - TraesCS7D01G494200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G494200 chr7D 100.000 2951 0 0 1 2951 602076974 602074024 0.000000e+00 5450.0
1 TraesCS7D01G494200 chr7D 83.067 939 124 19 1020 1938 602262507 602263430 0.000000e+00 821.0
2 TraesCS7D01G494200 chrUn 87.364 1567 140 28 637 2169 87249071 87250613 0.000000e+00 1744.0
3 TraesCS7D01G494200 chrUn 87.364 1567 140 28 637 2169 235064930 235066472 0.000000e+00 1744.0
4 TraesCS7D01G494200 chrUn 86.420 1377 138 25 831 2169 87255463 87256828 0.000000e+00 1461.0
5 TraesCS7D01G494200 chrUn 86.420 1377 138 25 831 2169 235071322 235072687 0.000000e+00 1461.0
6 TraesCS7D01G494200 chrUn 90.449 534 41 2 15 540 87246009 87246540 0.000000e+00 695.0
7 TraesCS7D01G494200 chrUn 88.291 316 30 5 1896 2206 87258020 87258333 3.590000e-99 372.0
8 TraesCS7D01G494200 chrUn 88.291 316 30 5 1896 2206 235073879 235074192 3.590000e-99 372.0
9 TraesCS7D01G494200 chrUn 87.342 316 33 5 1896 2206 87266240 87265927 3.620000e-94 355.0
10 TraesCS7D01G494200 chrUn 93.443 61 2 1 2242 2300 87258560 87258620 4.050000e-14 89.8
11 TraesCS7D01G494200 chrUn 93.443 61 2 1 2242 2300 235074419 235074479 4.050000e-14 89.8
12 TraesCS7D01G494200 chrUn 97.727 44 1 0 539 582 87246637 87246680 3.150000e-10 76.8
13 TraesCS7D01G494200 chr7A 87.603 1339 110 25 635 1954 693841777 693840476 0.000000e+00 1502.0
14 TraesCS7D01G494200 chr7A 95.131 534 26 0 7 540 693842554 693842021 0.000000e+00 843.0
15 TraesCS7D01G494200 chr7A 81.988 966 109 30 1020 1938 694036484 694037431 0.000000e+00 760.0
16 TraesCS7D01G494200 chr7A 93.519 108 7 0 539 646 693841925 693841818 8.460000e-36 161.0
17 TraesCS7D01G494200 chr7A 86.364 110 15 0 387 496 694031938 694032047 1.440000e-23 121.0
18 TraesCS7D01G494200 chr7B 87.602 1226 111 22 756 1952 682743388 682744601 0.000000e+00 1384.0
19 TraesCS7D01G494200 chr7B 85.520 1174 111 24 637 1775 681790383 681789234 0.000000e+00 1171.0
20 TraesCS7D01G494200 chr7B 93.097 507 35 0 34 540 681791111 681790605 0.000000e+00 743.0
21 TraesCS7D01G494200 chr7B 87.342 316 33 5 1896 2206 682756928 682757241 3.620000e-94 355.0
22 TraesCS7D01G494200 chr7B 95.575 113 4 1 534 646 681790515 681790404 2.340000e-41 180.0
23 TraesCS7D01G494200 chr6D 86.653 487 59 5 2461 2942 337846661 337847146 4.330000e-148 534.0
24 TraesCS7D01G494200 chr4B 84.898 490 64 8 2464 2946 400701374 400701860 1.230000e-133 486.0
25 TraesCS7D01G494200 chr6B 84.677 496 63 10 2464 2951 482470024 482469534 1.590000e-132 483.0
26 TraesCS7D01G494200 chr3D 84.082 490 71 6 2464 2949 374036598 374036112 1.600000e-127 466.0
27 TraesCS7D01G494200 chr6A 83.768 499 68 11 2461 2951 478311082 478311575 7.450000e-126 460.0
28 TraesCS7D01G494200 chr4D 84.134 479 63 10 2481 2951 58273728 58274201 4.490000e-123 451.0
29 TraesCS7D01G494200 chr4D 81.524 525 78 16 2432 2946 362800803 362801318 5.880000e-112 414.0
30 TraesCS7D01G494200 chr1D 83.200 500 75 5 2458 2951 347407741 347408237 1.610000e-122 449.0
31 TraesCS7D01G494200 chr3A 83.402 482 70 8 2464 2939 496047748 496047271 3.490000e-119 438.0
32 TraesCS7D01G494200 chr5D 84.332 217 25 7 1231 1444 107553712 107553502 1.390000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G494200 chr7D 602074024 602076974 2950 True 5450.000000 5450 100.000000 1 2951 1 chr7D.!!$R1 2950
1 TraesCS7D01G494200 chr7D 602262507 602263430 923 False 821.000000 821 83.067000 1020 1938 1 chr7D.!!$F1 918
2 TraesCS7D01G494200 chrUn 235064930 235066472 1542 False 1744.000000 1744 87.364000 637 2169 1 chrUn.!!$F1 1532
3 TraesCS7D01G494200 chrUn 87246009 87250613 4604 False 838.600000 1744 91.846667 15 2169 3 chrUn.!!$F2 2154
4 TraesCS7D01G494200 chrUn 87255463 87258620 3157 False 640.933333 1461 89.384667 831 2300 3 chrUn.!!$F3 1469
5 TraesCS7D01G494200 chrUn 235071322 235074479 3157 False 640.933333 1461 89.384667 831 2300 3 chrUn.!!$F4 1469
6 TraesCS7D01G494200 chr7A 693840476 693842554 2078 True 835.333333 1502 92.084333 7 1954 3 chr7A.!!$R1 1947
7 TraesCS7D01G494200 chr7A 694036484 694037431 947 False 760.000000 760 81.988000 1020 1938 1 chr7A.!!$F2 918
8 TraesCS7D01G494200 chr7B 682743388 682744601 1213 False 1384.000000 1384 87.602000 756 1952 1 chr7B.!!$F1 1196
9 TraesCS7D01G494200 chr7B 681789234 681791111 1877 True 698.000000 1171 91.397333 34 1775 3 chr7B.!!$R1 1741
10 TraesCS7D01G494200 chr4D 362800803 362801318 515 False 414.000000 414 81.524000 2432 2946 1 chr4D.!!$F2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 3290 1.001487 TGCTTTGCTGAACGACCATTG 60.001 47.619 0.0 0.0 0.0 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 6631 0.027194 CAAGCTGATCATCCGTTGCG 59.973 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.160607 TGGACAGTTTATCCCTGTACTTG 57.839 43.478 4.56 0.00 43.04 3.16
50 51 5.320549 ACTTGTCAATGCTGAATTCATCC 57.679 39.130 8.96 4.03 31.88 3.51
104 105 6.547510 AGGTAATATTCTCCAAGAATGCAACC 59.452 38.462 11.51 13.46 44.14 3.77
404 413 4.930696 TCATCTGGGACTACTTCTACACA 58.069 43.478 0.00 0.00 0.00 3.72
500 509 2.303311 GGATTCTCCCTACACTATGCCC 59.697 54.545 0.00 0.00 0.00 5.36
529 538 2.266055 GGAGGCGTCCAGGTGAAG 59.734 66.667 20.47 0.00 43.31 3.02
712 3185 5.189736 ACCTGCTTGTGTCCTCTTATATTCA 59.810 40.000 0.00 0.00 0.00 2.57
716 3189 7.492524 TGCTTGTGTCCTCTTATATTCAGTAG 58.507 38.462 0.00 0.00 0.00 2.57
717 3190 7.124298 TGCTTGTGTCCTCTTATATTCAGTAGT 59.876 37.037 0.00 0.00 0.00 2.73
718 3191 8.630917 GCTTGTGTCCTCTTATATTCAGTAGTA 58.369 37.037 0.00 0.00 0.00 1.82
719 3192 9.953697 CTTGTGTCCTCTTATATTCAGTAGTAC 57.046 37.037 0.00 0.00 0.00 2.73
720 3193 9.696572 TTGTGTCCTCTTATATTCAGTAGTACT 57.303 33.333 0.00 0.00 0.00 2.73
801 3277 2.159393 TCAAGTGTGTCAACTGCTTTGC 60.159 45.455 0.00 0.00 34.88 3.68
814 3290 1.001487 TGCTTTGCTGAACGACCATTG 60.001 47.619 0.00 0.00 0.00 2.82
819 3295 1.079503 GCTGAACGACCATTGGACTC 58.920 55.000 10.37 0.00 0.00 3.36
842 3318 8.212312 ACTCTACCTATATGATAGTACGATGGG 58.788 40.741 0.00 0.00 0.00 4.00
851 3327 4.899457 TGATAGTACGATGGGGACTTGATT 59.101 41.667 0.00 0.00 0.00 2.57
863 3339 5.724370 TGGGGACTTGATTCTGTGTAATCTA 59.276 40.000 0.00 0.00 36.90 1.98
864 3340 6.214615 TGGGGACTTGATTCTGTGTAATCTAA 59.785 38.462 0.00 0.00 36.90 2.10
865 3341 7.092444 TGGGGACTTGATTCTGTGTAATCTAAT 60.092 37.037 0.00 0.00 36.90 1.73
901 3377 5.576447 AGAAAATTTCAACGACAACACCT 57.424 34.783 8.55 0.00 0.00 4.00
921 3416 3.563808 CCTTCAATGTTCCTTTCGTGTGA 59.436 43.478 0.00 0.00 0.00 3.58
936 3431 5.004922 TCGTGTGATACATCATGCACTAA 57.995 39.130 0.00 0.00 39.30 2.24
937 3432 5.600696 TCGTGTGATACATCATGCACTAAT 58.399 37.500 0.00 0.00 39.30 1.73
946 3444 9.903682 GATACATCATGCACTAATTTTATGCTT 57.096 29.630 0.00 1.81 40.13 3.91
948 3446 8.415192 ACATCATGCACTAATTTTATGCTTTG 57.585 30.769 0.00 7.28 40.13 2.77
980 3478 3.170717 TGACAACTAACTACTCCCCCAG 58.829 50.000 0.00 0.00 0.00 4.45
1089 3603 3.075005 GCCCTAGTCCTGGCGTCA 61.075 66.667 0.00 0.00 38.00 4.35
1112 3629 2.076622 CTATGCCTCTACCACGCGCT 62.077 60.000 5.73 0.00 0.00 5.92
1184 3701 0.870307 GGTTCGTCGATCATCGTGGG 60.870 60.000 7.00 0.00 41.35 4.61
1203 3720 2.181777 GGCGACGCACTCATCAGA 59.818 61.111 23.09 0.00 0.00 3.27
1212 3729 1.271054 GCACTCATCAGACCACCAACT 60.271 52.381 0.00 0.00 0.00 3.16
1384 3913 1.077429 GCCTTCTTCCTCGGCCATT 60.077 57.895 2.24 0.00 37.86 3.16
1462 4030 3.228017 TGGCGGTGGAGTTCGACA 61.228 61.111 0.00 0.00 42.60 4.35
1473 4041 3.071023 TGGAGTTCGACACTTTCCTCAAT 59.929 43.478 0.00 0.00 35.01 2.57
1480 4048 3.372206 CGACACTTTCCTCAATCATGTCC 59.628 47.826 0.00 0.00 33.09 4.02
1729 4306 3.814268 CCTTTGCCGGGATGCACG 61.814 66.667 2.18 0.00 41.88 5.34
1890 4470 0.797249 CGACGAGGTGTGTCCGAATC 60.797 60.000 0.00 0.00 41.99 2.52
1905 4485 3.304382 CGAATCGGATTTCAGTTTCGG 57.696 47.619 4.47 0.57 38.57 4.30
1912 4492 3.364964 CGGATTTCAGTTTCGGTTCAAGG 60.365 47.826 0.00 0.00 0.00 3.61
1923 4508 2.046285 GTTCAAGGCATCACCGGGG 61.046 63.158 6.32 0.00 46.52 5.73
1959 4544 5.950758 CTGTCCTAGCATAGTACAGTAGG 57.049 47.826 0.00 0.00 46.71 3.18
1960 4545 5.622180 CTGTCCTAGCATAGTACAGTAGGA 58.378 45.833 0.00 0.44 46.71 2.94
1961 4546 5.622180 TGTCCTAGCATAGTACAGTAGGAG 58.378 45.833 0.00 0.00 39.94 3.69
1962 4547 5.132312 TGTCCTAGCATAGTACAGTAGGAGT 59.868 44.000 0.00 0.00 39.94 3.85
1963 4548 6.328410 TGTCCTAGCATAGTACAGTAGGAGTA 59.672 42.308 0.00 0.00 39.94 2.59
1996 4600 5.861787 GCATGTAAAGAACCGCTGTAAAAAT 59.138 36.000 0.00 0.00 0.00 1.82
2002 4606 1.516169 CCGCTGTAAAAATGCCCGC 60.516 57.895 0.00 0.00 0.00 6.13
2004 4608 1.516169 GCTGTAAAAATGCCCGCGG 60.516 57.895 21.04 21.04 0.00 6.46
2025 4629 5.411669 GCGGGAAATAGAGAGAGAAACAAAA 59.588 40.000 0.00 0.00 0.00 2.44
2080 4684 4.201950 GGCATACTGAATTGTGTGGATCAC 60.202 45.833 0.00 0.00 46.31 3.06
2094 4698 0.803380 GATCACGGCTTTTGGCATGC 60.803 55.000 9.90 9.90 46.39 4.06
2098 4702 0.969917 ACGGCTTTTGGCATGCCATA 60.970 50.000 38.78 31.21 46.64 2.74
2130 4734 0.776810 TTGATGCCAACTTGGGAGGA 59.223 50.000 9.95 0.00 42.59 3.71
2133 4737 0.685458 ATGCCAACTTGGGAGGATGC 60.685 55.000 9.95 0.00 42.59 3.91
2154 4758 5.953183 TGCGATTTGAATAATTTGTGAGCT 58.047 33.333 0.00 0.00 0.00 4.09
2155 4759 6.389091 TGCGATTTGAATAATTTGTGAGCTT 58.611 32.000 0.00 0.00 0.00 3.74
2199 6271 3.764885 GGTGACCACTGCAATTGATAC 57.235 47.619 10.34 0.00 0.00 2.24
2206 6278 3.379057 CCACTGCAATTGATACTGCATCA 59.621 43.478 10.34 0.00 46.87 3.07
2208 6280 4.976116 CACTGCAATTGATACTGCATCATG 59.024 41.667 10.34 0.00 46.87 3.07
2211 6283 4.641094 TGCAATTGATACTGCATCATGACA 59.359 37.500 10.34 0.00 43.44 3.58
2213 6285 5.685954 GCAATTGATACTGCATCATGACAAG 59.314 40.000 10.34 0.00 43.26 3.16
2214 6286 6.679638 GCAATTGATACTGCATCATGACAAGT 60.680 38.462 10.34 4.76 43.26 3.16
2215 6287 7.467675 GCAATTGATACTGCATCATGACAAGTA 60.468 37.037 10.34 13.47 43.26 2.24
2216 6288 6.908870 TTGATACTGCATCATGACAAGTAC 57.091 37.500 13.40 9.63 43.26 2.73
2217 6289 6.225981 TGATACTGCATCATGACAAGTACT 57.774 37.500 13.40 0.00 38.79 2.73
2218 6290 7.346751 TGATACTGCATCATGACAAGTACTA 57.653 36.000 13.40 5.98 38.79 1.82
2219 6291 7.781056 TGATACTGCATCATGACAAGTACTAA 58.219 34.615 13.40 3.65 38.79 2.24
2223 6295 4.941263 TGCATCATGACAAGTACTAAACCC 59.059 41.667 0.00 0.00 0.00 4.11
2224 6296 5.186198 GCATCATGACAAGTACTAAACCCT 58.814 41.667 0.00 0.00 0.00 4.34
2225 6297 5.648092 GCATCATGACAAGTACTAAACCCTT 59.352 40.000 0.00 0.00 0.00 3.95
2227 6299 5.001232 TCATGACAAGTACTAAACCCTTGC 58.999 41.667 0.00 0.00 39.30 4.01
2228 6300 4.425180 TGACAAGTACTAAACCCTTGCA 57.575 40.909 0.00 0.00 39.30 4.08
2229 6301 4.385825 TGACAAGTACTAAACCCTTGCAG 58.614 43.478 0.00 0.00 39.30 4.41
2232 6304 6.123045 ACAAGTACTAAACCCTTGCAGTAT 57.877 37.500 0.00 0.00 39.30 2.12
2233 6305 5.938125 ACAAGTACTAAACCCTTGCAGTATG 59.062 40.000 0.00 0.00 39.30 2.39
2234 6306 5.099042 AGTACTAAACCCTTGCAGTATGG 57.901 43.478 0.00 0.00 35.86 2.74
2236 6308 4.382386 ACTAAACCCTTGCAGTATGGTT 57.618 40.909 5.69 5.69 42.73 3.67
2237 6309 5.508280 ACTAAACCCTTGCAGTATGGTTA 57.492 39.130 10.45 0.01 40.10 2.85
2239 6311 7.202972 ACTAAACCCTTGCAGTATGGTTATA 57.797 36.000 10.45 6.28 40.10 0.98
2244 6507 6.769512 ACCCTTGCAGTATGGTTATAGTATG 58.230 40.000 0.00 0.00 35.86 2.39
2300 6565 4.523173 TCTCAGATCTAAACCAAGTCGTGT 59.477 41.667 0.00 0.00 0.00 4.49
2301 6566 5.010719 TCTCAGATCTAAACCAAGTCGTGTT 59.989 40.000 0.00 0.00 0.00 3.32
2302 6567 5.227908 TCAGATCTAAACCAAGTCGTGTTC 58.772 41.667 0.00 0.00 0.00 3.18
2303 6568 4.090066 CAGATCTAAACCAAGTCGTGTTCG 59.910 45.833 0.00 0.00 38.55 3.95
2304 6569 3.713858 TCTAAACCAAGTCGTGTTCGA 57.286 42.857 0.00 0.00 44.12 3.71
2317 6582 5.179045 TCGTGTTCGATAAATCCTCTACC 57.821 43.478 0.00 0.00 41.35 3.18
2318 6583 4.641541 TCGTGTTCGATAAATCCTCTACCA 59.358 41.667 0.00 0.00 41.35 3.25
2319 6584 5.125900 TCGTGTTCGATAAATCCTCTACCAA 59.874 40.000 0.00 0.00 41.35 3.67
2320 6585 5.983720 CGTGTTCGATAAATCCTCTACCAAT 59.016 40.000 0.00 0.00 39.71 3.16
2321 6586 6.144080 CGTGTTCGATAAATCCTCTACCAATC 59.856 42.308 0.00 0.00 39.71 2.67
2322 6587 7.210873 GTGTTCGATAAATCCTCTACCAATCT 58.789 38.462 0.00 0.00 0.00 2.40
2323 6588 8.358148 GTGTTCGATAAATCCTCTACCAATCTA 58.642 37.037 0.00 0.00 0.00 1.98
2324 6589 9.090103 TGTTCGATAAATCCTCTACCAATCTAT 57.910 33.333 0.00 0.00 0.00 1.98
2327 6592 8.904834 TCGATAAATCCTCTACCAATCTATAGC 58.095 37.037 0.00 0.00 0.00 2.97
2328 6593 7.858382 CGATAAATCCTCTACCAATCTATAGCG 59.142 40.741 0.00 0.00 0.00 4.26
2329 6594 6.919775 AAATCCTCTACCAATCTATAGCGT 57.080 37.500 0.00 0.00 0.00 5.07
2330 6595 9.696572 ATAAATCCTCTACCAATCTATAGCGTA 57.303 33.333 0.00 0.00 0.00 4.42
2331 6596 8.418597 AAATCCTCTACCAATCTATAGCGTAA 57.581 34.615 0.00 0.00 0.00 3.18
2332 6597 6.814506 TCCTCTACCAATCTATAGCGTAAC 57.185 41.667 0.00 0.00 0.00 2.50
2333 6598 6.301486 TCCTCTACCAATCTATAGCGTAACA 58.699 40.000 0.00 0.00 0.00 2.41
2334 6599 6.430308 TCCTCTACCAATCTATAGCGTAACAG 59.570 42.308 0.00 0.00 0.00 3.16
2335 6600 6.010294 TCTACCAATCTATAGCGTAACAGC 57.990 41.667 0.00 0.00 37.41 4.40
2336 6601 4.665833 ACCAATCTATAGCGTAACAGCA 57.334 40.909 0.00 0.00 40.15 4.41
2337 6602 4.369182 ACCAATCTATAGCGTAACAGCAC 58.631 43.478 0.00 0.00 40.15 4.40
2338 6603 4.142026 ACCAATCTATAGCGTAACAGCACA 60.142 41.667 0.00 0.00 40.15 4.57
2339 6604 4.991056 CCAATCTATAGCGTAACAGCACAT 59.009 41.667 0.00 0.00 40.15 3.21
2340 6605 5.107337 CCAATCTATAGCGTAACAGCACATG 60.107 44.000 0.00 0.00 40.15 3.21
2341 6606 4.911514 TCTATAGCGTAACAGCACATGA 57.088 40.909 0.00 0.00 40.15 3.07
2342 6607 4.607955 TCTATAGCGTAACAGCACATGAC 58.392 43.478 0.00 0.00 40.15 3.06
2343 6608 2.734276 TAGCGTAACAGCACATGACA 57.266 45.000 0.00 0.00 40.15 3.58
2344 6609 1.877637 AGCGTAACAGCACATGACAA 58.122 45.000 0.00 0.00 40.15 3.18
2345 6610 2.217750 AGCGTAACAGCACATGACAAA 58.782 42.857 0.00 0.00 40.15 2.83
2346 6611 2.032030 AGCGTAACAGCACATGACAAAC 60.032 45.455 0.00 0.00 40.15 2.93
2347 6612 2.286713 GCGTAACAGCACATGACAAACA 60.287 45.455 0.00 0.00 37.05 2.83
2348 6613 3.609175 GCGTAACAGCACATGACAAACAT 60.609 43.478 0.00 0.00 37.06 2.71
2349 6614 4.536065 CGTAACAGCACATGACAAACATT 58.464 39.130 0.00 0.00 37.07 2.71
2350 6615 4.975502 CGTAACAGCACATGACAAACATTT 59.024 37.500 0.00 0.00 37.07 2.32
2351 6616 5.115472 CGTAACAGCACATGACAAACATTTC 59.885 40.000 0.00 0.00 37.07 2.17
2352 6617 4.652421 ACAGCACATGACAAACATTTCA 57.348 36.364 0.00 0.00 37.07 2.69
2353 6618 5.008619 ACAGCACATGACAAACATTTCAA 57.991 34.783 0.00 0.00 37.07 2.69
2354 6619 5.417811 ACAGCACATGACAAACATTTCAAA 58.582 33.333 0.00 0.00 37.07 2.69
2355 6620 5.873712 ACAGCACATGACAAACATTTCAAAA 59.126 32.000 0.00 0.00 37.07 2.44
2356 6621 6.036300 ACAGCACATGACAAACATTTCAAAAG 59.964 34.615 0.00 0.00 37.07 2.27
2357 6622 5.006941 AGCACATGACAAACATTTCAAAAGC 59.993 36.000 0.00 0.00 37.07 3.51
2358 6623 5.220624 GCACATGACAAACATTTCAAAAGCA 60.221 36.000 0.00 0.00 37.07 3.91
2359 6624 6.675002 GCACATGACAAACATTTCAAAAGCAA 60.675 34.615 0.00 0.00 37.07 3.91
2360 6625 7.242079 CACATGACAAACATTTCAAAAGCAAA 58.758 30.769 0.00 0.00 37.07 3.68
2361 6626 7.749570 CACATGACAAACATTTCAAAAGCAAAA 59.250 29.630 0.00 0.00 37.07 2.44
2362 6627 8.460428 ACATGACAAACATTTCAAAAGCAAAAT 58.540 25.926 0.00 0.00 37.07 1.82
2363 6628 9.291664 CATGACAAACATTTCAAAAGCAAAATT 57.708 25.926 0.00 0.00 37.07 1.82
2364 6629 9.857957 ATGACAAACATTTCAAAAGCAAAATTT 57.142 22.222 0.00 0.00 35.45 1.82
2365 6630 9.688592 TGACAAACATTTCAAAAGCAAAATTTT 57.311 22.222 0.00 0.00 32.65 1.82
2367 6632 8.848528 ACAAACATTTCAAAAGCAAAATTTTCG 58.151 25.926 0.00 0.00 30.01 3.46
2368 6633 7.435203 AACATTTCAAAAGCAAAATTTTCGC 57.565 28.000 13.93 13.93 30.01 4.70
2369 6634 6.549952 ACATTTCAAAAGCAAAATTTTCGCA 58.450 28.000 20.12 5.49 30.01 5.10
2370 6635 7.025963 ACATTTCAAAAGCAAAATTTTCGCAA 58.974 26.923 20.12 10.01 30.01 4.85
2371 6636 6.845272 TTTCAAAAGCAAAATTTTCGCAAC 57.155 29.167 20.12 3.42 30.01 4.17
2372 6637 4.572845 TCAAAAGCAAAATTTTCGCAACG 58.427 34.783 20.12 4.38 30.01 4.10
2373 6638 3.584095 AAAGCAAAATTTTCGCAACGG 57.416 38.095 20.12 3.81 0.00 4.44
2374 6639 2.500509 AGCAAAATTTTCGCAACGGA 57.499 40.000 20.12 0.00 0.00 4.69
2375 6640 3.025287 AGCAAAATTTTCGCAACGGAT 57.975 38.095 20.12 0.00 0.00 4.18
2376 6641 2.730928 AGCAAAATTTTCGCAACGGATG 59.269 40.909 20.12 2.60 0.00 3.51
2377 6642 2.728839 GCAAAATTTTCGCAACGGATGA 59.271 40.909 15.81 0.00 0.00 2.92
2378 6643 3.367630 GCAAAATTTTCGCAACGGATGAT 59.632 39.130 15.81 0.00 0.00 2.45
2379 6644 4.490799 GCAAAATTTTCGCAACGGATGATC 60.491 41.667 15.81 0.00 0.00 2.92
2380 6645 4.433186 AAATTTTCGCAACGGATGATCA 57.567 36.364 0.00 0.00 0.00 2.92
2381 6646 3.680642 ATTTTCGCAACGGATGATCAG 57.319 42.857 0.09 0.00 0.00 2.90
2382 6647 0.726827 TTTCGCAACGGATGATCAGC 59.273 50.000 1.26 1.26 0.00 4.26
2383 6648 0.108186 TTCGCAACGGATGATCAGCT 60.108 50.000 11.34 0.00 0.00 4.24
2384 6649 0.108186 TCGCAACGGATGATCAGCTT 60.108 50.000 11.34 0.00 0.00 3.74
2385 6650 0.027194 CGCAACGGATGATCAGCTTG 59.973 55.000 11.34 9.55 0.00 4.01
2386 6651 0.248377 GCAACGGATGATCAGCTTGC 60.248 55.000 18.38 18.38 0.00 4.01
2387 6652 1.089112 CAACGGATGATCAGCTTGCA 58.911 50.000 11.34 0.00 0.00 4.08
2388 6653 1.674441 CAACGGATGATCAGCTTGCAT 59.326 47.619 11.34 0.00 0.00 3.96
2389 6654 2.874086 CAACGGATGATCAGCTTGCATA 59.126 45.455 11.34 0.00 0.00 3.14
2390 6655 3.198409 ACGGATGATCAGCTTGCATAA 57.802 42.857 11.34 0.00 0.00 1.90
2391 6656 3.136763 ACGGATGATCAGCTTGCATAAG 58.863 45.455 11.34 0.00 36.97 1.73
2392 6657 2.483106 CGGATGATCAGCTTGCATAAGG 59.517 50.000 11.34 0.00 34.40 2.69
2393 6658 2.818432 GGATGATCAGCTTGCATAAGGG 59.182 50.000 11.34 0.00 34.40 3.95
2394 6659 3.484407 GATGATCAGCTTGCATAAGGGT 58.516 45.455 3.07 0.00 34.40 4.34
2395 6660 3.370840 TGATCAGCTTGCATAAGGGTT 57.629 42.857 0.00 0.00 34.40 4.11
2396 6661 3.700538 TGATCAGCTTGCATAAGGGTTT 58.299 40.909 0.00 0.00 34.40 3.27
2397 6662 3.444742 TGATCAGCTTGCATAAGGGTTTG 59.555 43.478 0.00 0.00 34.40 2.93
2398 6663 3.153369 TCAGCTTGCATAAGGGTTTGA 57.847 42.857 0.00 0.00 34.40 2.69
2399 6664 3.084039 TCAGCTTGCATAAGGGTTTGAG 58.916 45.455 0.00 0.00 34.40 3.02
2400 6665 2.165030 CAGCTTGCATAAGGGTTTGAGG 59.835 50.000 0.00 0.00 34.40 3.86
2401 6666 2.041620 AGCTTGCATAAGGGTTTGAGGA 59.958 45.455 0.00 0.00 34.40 3.71
2402 6667 2.424956 GCTTGCATAAGGGTTTGAGGAG 59.575 50.000 0.00 0.00 34.40 3.69
2403 6668 3.873801 GCTTGCATAAGGGTTTGAGGAGA 60.874 47.826 0.00 0.00 34.40 3.71
2404 6669 4.335416 CTTGCATAAGGGTTTGAGGAGAA 58.665 43.478 0.00 0.00 0.00 2.87
2405 6670 4.380843 TGCATAAGGGTTTGAGGAGAAA 57.619 40.909 0.00 0.00 0.00 2.52
2406 6671 4.735369 TGCATAAGGGTTTGAGGAGAAAA 58.265 39.130 0.00 0.00 0.00 2.29
2407 6672 4.766891 TGCATAAGGGTTTGAGGAGAAAAG 59.233 41.667 0.00 0.00 0.00 2.27
2408 6673 4.380973 GCATAAGGGTTTGAGGAGAAAAGC 60.381 45.833 0.00 0.00 34.93 3.51
2409 6674 3.312736 AAGGGTTTGAGGAGAAAAGCA 57.687 42.857 0.00 0.00 36.88 3.91
2410 6675 2.587522 AGGGTTTGAGGAGAAAAGCAC 58.412 47.619 0.00 0.00 36.88 4.40
2411 6676 2.091885 AGGGTTTGAGGAGAAAAGCACA 60.092 45.455 0.00 0.00 36.88 4.57
2412 6677 2.294512 GGGTTTGAGGAGAAAAGCACAG 59.705 50.000 0.00 0.00 36.88 3.66
2413 6678 2.952310 GGTTTGAGGAGAAAAGCACAGT 59.048 45.455 0.00 0.00 35.58 3.55
2414 6679 3.381590 GGTTTGAGGAGAAAAGCACAGTT 59.618 43.478 0.00 0.00 35.58 3.16
2415 6680 4.354587 GTTTGAGGAGAAAAGCACAGTTG 58.645 43.478 0.00 0.00 0.00 3.16
2416 6681 3.558931 TGAGGAGAAAAGCACAGTTGA 57.441 42.857 0.00 0.00 0.00 3.18
2417 6682 4.090761 TGAGGAGAAAAGCACAGTTGAT 57.909 40.909 0.00 0.00 0.00 2.57
2418 6683 3.817084 TGAGGAGAAAAGCACAGTTGATG 59.183 43.478 0.00 0.00 0.00 3.07
2419 6684 3.817647 GAGGAGAAAAGCACAGTTGATGT 59.182 43.478 0.00 0.00 45.43 3.06
2430 6695 4.552166 ACAGTTGATGTGGAAGAAAACG 57.448 40.909 0.00 0.00 41.91 3.60
2447 6712 2.927004 CGCAAGTAGGGTCAAGCAA 58.073 52.632 0.00 0.00 0.00 3.91
2453 6718 3.577805 AGTAGGGTCAAGCAAAACACT 57.422 42.857 0.00 0.00 32.80 3.55
2455 6720 2.143876 AGGGTCAAGCAAAACACTGT 57.856 45.000 0.00 0.00 0.00 3.55
2456 6721 2.024414 AGGGTCAAGCAAAACACTGTC 58.976 47.619 0.00 0.00 0.00 3.51
2462 6728 1.583054 AGCAAAACACTGTCCTCGTC 58.417 50.000 0.00 0.00 0.00 4.20
2469 6735 1.614413 ACACTGTCCTCGTCTTCCTTC 59.386 52.381 0.00 0.00 0.00 3.46
2475 6741 3.032459 GTCCTCGTCTTCCTTCCCTAAT 58.968 50.000 0.00 0.00 0.00 1.73
2477 6743 2.365941 CCTCGTCTTCCTTCCCTAATCC 59.634 54.545 0.00 0.00 0.00 3.01
2491 6757 0.903454 TAATCCTAGGCGGCTAGGGC 60.903 60.000 46.11 7.00 44.94 5.19
2495 6761 1.523938 CTAGGCGGCTAGGGCAAAC 60.524 63.158 32.50 0.00 40.87 2.93
2497 6763 1.968050 TAGGCGGCTAGGGCAAACTC 61.968 60.000 15.70 0.00 40.87 3.01
2499 6765 1.815840 GCGGCTAGGGCAAACTCTC 60.816 63.158 0.00 0.00 40.87 3.20
2500 6766 1.901085 CGGCTAGGGCAAACTCTCT 59.099 57.895 0.00 0.00 40.87 3.10
2501 6767 0.179097 CGGCTAGGGCAAACTCTCTC 60.179 60.000 0.00 0.00 40.87 3.20
2510 6776 1.801178 GCAAACTCTCTCCTCCAAACG 59.199 52.381 0.00 0.00 0.00 3.60
2511 6777 1.801178 CAAACTCTCTCCTCCAAACGC 59.199 52.381 0.00 0.00 0.00 4.84
2513 6779 1.153745 CTCTCTCCTCCAAACGCCG 60.154 63.158 0.00 0.00 0.00 6.46
2516 6782 3.121030 CTCCTCCAAACGCCGCTG 61.121 66.667 0.00 0.00 0.00 5.18
2540 6806 1.557269 AAGCCTGTGGATTCGCCTCT 61.557 55.000 0.00 0.00 37.63 3.69
2549 6815 1.077429 ATTCGCCTCTCCTTTGCCC 60.077 57.895 0.00 0.00 0.00 5.36
2550 6816 2.876368 ATTCGCCTCTCCTTTGCCCG 62.876 60.000 0.00 0.00 0.00 6.13
2552 6818 4.416738 GCCTCTCCTTTGCCCGCT 62.417 66.667 0.00 0.00 0.00 5.52
2556 6822 3.437795 CTCCTTTGCCCGCTGCTG 61.438 66.667 0.00 0.00 42.00 4.41
2596 6862 1.522569 GGAATCCCAGTGTCTCCGG 59.477 63.158 0.00 0.00 0.00 5.14
2599 6865 1.265454 AATCCCAGTGTCTCCGGTCC 61.265 60.000 0.00 0.00 0.00 4.46
2601 6867 2.675423 CCAGTGTCTCCGGTCCGA 60.675 66.667 14.39 0.00 0.00 4.55
2603 6869 1.605058 CCAGTGTCTCCGGTCCGATT 61.605 60.000 14.39 0.00 0.00 3.34
2604 6870 1.100510 CAGTGTCTCCGGTCCGATTA 58.899 55.000 14.39 0.00 0.00 1.75
2605 6871 1.065701 CAGTGTCTCCGGTCCGATTAG 59.934 57.143 14.39 7.37 0.00 1.73
2606 6872 1.101331 GTGTCTCCGGTCCGATTAGT 58.899 55.000 14.39 0.00 0.00 2.24
2607 6873 2.092753 AGTGTCTCCGGTCCGATTAGTA 60.093 50.000 14.39 0.00 0.00 1.82
2608 6874 2.290093 GTGTCTCCGGTCCGATTAGTAG 59.710 54.545 14.39 0.37 0.00 2.57
2611 6877 3.379688 GTCTCCGGTCCGATTAGTAGTTT 59.620 47.826 14.39 0.00 0.00 2.66
2619 6885 6.514048 CGGTCCGATTAGTAGTTTAGGTTAGG 60.514 46.154 4.91 0.00 0.00 2.69
2624 6890 7.708322 CCGATTAGTAGTTTAGGTTAGGGTTTC 59.292 40.741 0.00 0.00 0.00 2.78
2628 6894 9.828691 TTAGTAGTTTAGGTTAGGGTTTCTAGT 57.171 33.333 0.00 0.00 0.00 2.57
2629 6895 8.359875 AGTAGTTTAGGTTAGGGTTTCTAGTC 57.640 38.462 0.00 0.00 0.00 2.59
2630 6896 6.278172 AGTTTAGGTTAGGGTTTCTAGTCG 57.722 41.667 0.00 0.00 0.00 4.18
2631 6897 5.777223 AGTTTAGGTTAGGGTTTCTAGTCGT 59.223 40.000 0.00 0.00 0.00 4.34
2632 6898 5.649782 TTAGGTTAGGGTTTCTAGTCGTG 57.350 43.478 0.00 0.00 0.00 4.35
2639 6909 1.012486 GTTTCTAGTCGTGGGTGCGG 61.012 60.000 0.00 0.00 0.00 5.69
2652 6922 3.381983 TGCGGTGCTCGGTCAGAT 61.382 61.111 2.61 0.00 39.69 2.90
2655 6925 2.512515 GGTGCTCGGTCAGATGGC 60.513 66.667 0.00 0.00 0.00 4.40
2659 6929 4.147449 CTCGGTCAGATGGCGGCA 62.147 66.667 16.34 16.34 0.00 5.69
2661 6931 4.457496 CGGTCAGATGGCGGCACT 62.457 66.667 16.34 11.17 0.00 4.40
2666 6936 0.175760 TCAGATGGCGGCACTACTTC 59.824 55.000 16.34 7.75 0.00 3.01
2677 6947 3.391049 GGCACTACTTCTTCGAGTTTGT 58.609 45.455 0.00 0.00 0.00 2.83
2688 6958 0.602905 CGAGTTTGTCTTCCGGGCTT 60.603 55.000 0.00 0.00 0.00 4.35
2689 6959 1.605753 GAGTTTGTCTTCCGGGCTTT 58.394 50.000 0.00 0.00 0.00 3.51
2726 6996 2.343484 TCCGTCTGGATGTAGTCGAT 57.657 50.000 0.00 0.00 40.17 3.59
2728 6998 1.001268 CCGTCTGGATGTAGTCGATGG 60.001 57.143 0.00 0.00 37.49 3.51
2730 7000 2.031595 CGTCTGGATGTAGTCGATGGAG 60.032 54.545 0.00 0.00 32.30 3.86
2736 7006 1.101635 TGTAGTCGATGGAGCTCCGG 61.102 60.000 27.43 18.63 39.43 5.14
2748 7018 1.007154 GCTCCGGCGTAGATTCCTC 60.007 63.158 2.79 0.00 0.00 3.71
2749 7019 1.660917 CTCCGGCGTAGATTCCTCC 59.339 63.158 6.01 0.00 0.00 4.30
2751 7021 2.131709 CCGGCGTAGATTCCTCCCA 61.132 63.158 6.01 0.00 0.00 4.37
2756 7026 2.243810 GCGTAGATTCCTCCCATCTCT 58.756 52.381 0.00 0.00 32.94 3.10
2791 7062 3.064931 GGTTAGGTTTCTCGTCTTGTGG 58.935 50.000 0.00 0.00 0.00 4.17
2804 7075 0.109597 CTTGTGGCGAGATTTGGTGC 60.110 55.000 0.00 0.00 0.00 5.01
2824 7095 2.103771 GCCAGGTGCTTCAGATCTATGA 59.896 50.000 0.00 0.00 36.87 2.15
2825 7096 3.432749 GCCAGGTGCTTCAGATCTATGAA 60.433 47.826 0.00 0.00 37.60 2.57
2827 7098 5.188434 CCAGGTGCTTCAGATCTATGAAAA 58.812 41.667 0.00 0.00 38.66 2.29
2829 7100 6.111382 CAGGTGCTTCAGATCTATGAAAAGA 58.889 40.000 0.00 0.00 38.66 2.52
2844 7115 5.356882 TGAAAAGATTCAATGGTGACGAC 57.643 39.130 0.00 0.00 42.47 4.34
2877 7148 2.436646 CTGGCCCTTAGGTGCACG 60.437 66.667 11.45 0.00 34.57 5.34
2879 7150 2.746277 GGCCCTTAGGTGCACGTG 60.746 66.667 21.78 12.28 34.57 4.49
2891 7162 1.201825 GCACGTGCACGAAGACTTC 59.798 57.895 42.94 19.21 43.02 3.01
2892 7163 1.853319 CACGTGCACGAAGACTTCC 59.147 57.895 42.94 0.00 43.02 3.46
2893 7164 1.300697 ACGTGCACGAAGACTTCCC 60.301 57.895 42.94 0.00 43.02 3.97
2895 7166 2.027625 GTGCACGAAGACTTCCCGG 61.028 63.158 9.63 0.00 0.00 5.73
2896 7167 3.119096 GCACGAAGACTTCCCGGC 61.119 66.667 9.63 7.06 0.00 6.13
2897 7168 2.657237 CACGAAGACTTCCCGGCT 59.343 61.111 9.63 0.00 0.00 5.52
2898 7169 1.738099 CACGAAGACTTCCCGGCTG 60.738 63.158 9.63 0.00 0.00 4.85
2899 7170 2.207924 ACGAAGACTTCCCGGCTGT 61.208 57.895 9.63 0.00 0.00 4.40
2900 7171 1.446272 CGAAGACTTCCCGGCTGTC 60.446 63.158 9.63 3.58 0.00 3.51
2901 7172 1.671742 GAAGACTTCCCGGCTGTCA 59.328 57.895 17.64 0.00 33.56 3.58
2903 7174 0.250513 AAGACTTCCCGGCTGTCATC 59.749 55.000 17.64 2.48 33.56 2.92
2904 7175 0.904865 AGACTTCCCGGCTGTCATCA 60.905 55.000 17.64 0.00 33.56 3.07
2912 7183 1.238439 CGGCTGTCATCAACAAGGTT 58.762 50.000 0.00 0.00 37.45 3.50
2942 7213 3.766691 GTAGGGGAGCGGCGACAA 61.767 66.667 12.98 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.354087 AGGGATAAACTGTCCAGGAGTTTT 59.646 41.667 11.16 4.17 40.04 2.43
3 4 3.916989 AGGGATAAACTGTCCAGGAGTTT 59.083 43.478 10.79 10.79 44.13 2.66
4 5 3.264450 CAGGGATAAACTGTCCAGGAGTT 59.736 47.826 0.00 0.00 37.49 3.01
5 6 2.840651 CAGGGATAAACTGTCCAGGAGT 59.159 50.000 0.00 0.00 37.49 3.85
23 24 5.181811 TGAATTCAGCATTGACAAGTACAGG 59.818 40.000 3.38 0.00 31.71 4.00
32 33 4.978083 AGTGGATGAATTCAGCATTGAC 57.022 40.909 23.99 14.17 33.17 3.18
104 105 2.580867 GCTACGAGCAGCCTCACG 60.581 66.667 0.00 0.00 41.89 4.35
404 413 1.004440 GAAGCTCACTCCAGCCGTT 60.004 57.895 0.00 0.00 40.65 4.44
528 537 5.059833 AGCAAAGAAAACGAACTGATCTCT 58.940 37.500 0.00 0.00 0.00 3.10
529 538 5.349824 AGCAAAGAAAACGAACTGATCTC 57.650 39.130 0.00 0.00 0.00 2.75
801 3277 2.751166 AGAGTCCAATGGTCGTTCAG 57.249 50.000 0.00 0.00 0.00 3.02
814 3290 9.263538 CATCGTACTATCATATAGGTAGAGTCC 57.736 40.741 0.00 0.00 0.00 3.85
819 3295 7.444792 GTCCCCATCGTACTATCATATAGGTAG 59.555 44.444 0.00 0.00 0.00 3.18
869 3345 7.227910 TGTCGTTGAAATTTTCTAGTTAAGGCT 59.772 33.333 10.33 0.00 0.00 4.58
901 3377 5.760743 TGTATCACACGAAAGGAACATTGAA 59.239 36.000 0.00 0.00 0.00 2.69
936 3431 8.992073 GTCAAGGTCAAATTCAAAGCATAAAAT 58.008 29.630 0.00 0.00 0.00 1.82
937 3432 7.984050 TGTCAAGGTCAAATTCAAAGCATAAAA 59.016 29.630 0.00 0.00 0.00 1.52
946 3444 7.639113 AGTTAGTTGTCAAGGTCAAATTCAA 57.361 32.000 0.00 0.00 0.00 2.69
948 3446 8.379457 AGTAGTTAGTTGTCAAGGTCAAATTC 57.621 34.615 0.00 0.00 0.00 2.17
980 3478 6.187727 TCATGAAATAGGGAATGGGTCTAC 57.812 41.667 0.00 0.00 0.00 2.59
983 3481 4.219288 GCATCATGAAATAGGGAATGGGTC 59.781 45.833 0.00 0.00 0.00 4.46
1016 3515 3.086600 GTGCCTGGGAGGGAGGAG 61.087 72.222 0.00 0.00 35.94 3.69
1089 3603 1.541233 GCGTGGTAGAGGCATAGCAAT 60.541 52.381 3.63 0.00 35.12 3.56
1184 3701 2.432456 TGATGAGTGCGTCGCCAC 60.432 61.111 15.88 12.72 35.98 5.01
1203 3720 0.764369 TCAGCTGGAGAGTTGGTGGT 60.764 55.000 15.13 0.00 31.53 4.16
1212 3729 2.483876 CTGTTTTTCGTCAGCTGGAGA 58.516 47.619 15.13 10.86 0.00 3.71
1249 3766 3.052082 CCAGAGCGGCACCTTGTG 61.052 66.667 1.45 0.00 36.51 3.33
1384 3913 2.576832 GGACGTCCACGGAAGGGAA 61.577 63.158 29.75 0.00 44.95 3.97
1462 4030 2.290260 TGCGGACATGATTGAGGAAAGT 60.290 45.455 0.00 0.00 0.00 2.66
1480 4048 2.298629 CGGAGCTGATGTCGATGCG 61.299 63.158 0.00 0.00 0.00 4.73
1540 4111 0.318784 GACGTCGTGAGGTTCTTGCT 60.319 55.000 0.63 0.00 0.00 3.91
1729 4306 2.344025 GAACGACCACAACAGTATCCC 58.656 52.381 0.00 0.00 0.00 3.85
1890 4470 3.364964 CCTTGAACCGAAACTGAAATCCG 60.365 47.826 0.00 0.00 0.00 4.18
1905 4485 2.046285 CCCCGGTGATGCCTTGAAC 61.046 63.158 0.00 0.00 34.25 3.18
1912 4492 3.961838 TAACACGCCCCGGTGATGC 62.962 63.158 0.00 0.00 40.38 3.91
1923 4508 1.574702 GGACAGCCAAGGTAACACGC 61.575 60.000 0.00 0.00 41.41 5.34
1996 4600 2.028125 CTCTCTATTTCCCGCGGGCA 62.028 60.000 39.89 28.66 34.68 5.36
2002 4606 6.874134 TCTTTTGTTTCTCTCTCTATTTCCCG 59.126 38.462 0.00 0.00 0.00 5.14
2004 4608 8.840833 ACTCTTTTGTTTCTCTCTCTATTTCC 57.159 34.615 0.00 0.00 0.00 3.13
2042 4646 4.021456 CAGTATGCCGAGGGTGATGTATAA 60.021 45.833 0.00 0.00 0.00 0.98
2094 4698 7.156000 TGGCATCAAATGATTAATGCTTATGG 58.844 34.615 18.78 0.00 43.14 2.74
2098 4702 6.646267 AGTTGGCATCAAATGATTAATGCTT 58.354 32.000 18.78 6.19 43.14 3.91
2112 4716 1.002069 ATCCTCCCAAGTTGGCATCA 58.998 50.000 17.07 0.36 35.79 3.07
2117 4721 0.107017 ATCGCATCCTCCCAAGTTGG 60.107 55.000 15.52 15.52 37.25 3.77
2130 4734 6.567050 AGCTCACAAATTATTCAAATCGCAT 58.433 32.000 0.00 0.00 0.00 4.73
2154 4758 9.713713 CCCATTGATTAATGATGCATCATAAAA 57.286 29.630 36.00 30.79 46.22 1.52
2155 4759 8.872134 ACCCATTGATTAATGATGCATCATAAA 58.128 29.630 36.00 25.78 46.22 1.40
2162 4766 4.341806 GGTCACCCATTGATTAATGATGCA 59.658 41.667 11.57 0.00 45.21 3.96
2178 6250 1.549203 ATCAATTGCAGTGGTCACCC 58.451 50.000 0.00 0.00 0.00 4.61
2199 6271 5.065218 GGGTTTAGTACTTGTCATGATGCAG 59.935 44.000 0.00 0.00 0.00 4.41
2206 6278 4.980573 TGCAAGGGTTTAGTACTTGTCAT 58.019 39.130 0.00 0.00 42.60 3.06
2208 6280 4.386711 ACTGCAAGGGTTTAGTACTTGTC 58.613 43.478 0.00 0.00 42.60 3.18
2211 6283 5.013808 ACCATACTGCAAGGGTTTAGTACTT 59.986 40.000 0.00 0.00 39.30 2.24
2213 6285 4.840271 ACCATACTGCAAGGGTTTAGTAC 58.160 43.478 0.00 0.00 39.30 2.73
2214 6286 5.508280 AACCATACTGCAAGGGTTTAGTA 57.492 39.130 1.64 0.00 40.59 1.82
2215 6287 4.382386 AACCATACTGCAAGGGTTTAGT 57.618 40.909 1.64 0.00 40.59 2.24
2216 6288 7.280356 ACTATAACCATACTGCAAGGGTTTAG 58.720 38.462 12.32 14.12 40.59 1.85
2217 6289 7.202972 ACTATAACCATACTGCAAGGGTTTA 57.797 36.000 12.32 5.21 40.59 2.01
2218 6290 6.074698 ACTATAACCATACTGCAAGGGTTT 57.925 37.500 12.32 4.43 40.59 3.27
2219 6291 5.710409 ACTATAACCATACTGCAAGGGTT 57.290 39.130 11.82 11.82 45.15 4.11
2223 6295 8.311650 GGTTCATACTATAACCATACTGCAAG 57.688 38.462 0.00 0.00 43.84 4.01
2301 6566 8.904834 GCTATAGATTGGTAGAGGATTTATCGA 58.095 37.037 3.21 0.00 0.00 3.59
2302 6567 7.858382 CGCTATAGATTGGTAGAGGATTTATCG 59.142 40.741 3.21 0.00 0.00 2.92
2303 6568 8.688151 ACGCTATAGATTGGTAGAGGATTTATC 58.312 37.037 3.21 0.00 0.00 1.75
2304 6569 8.596781 ACGCTATAGATTGGTAGAGGATTTAT 57.403 34.615 3.21 0.00 0.00 1.40
2305 6570 9.524496 TTACGCTATAGATTGGTAGAGGATTTA 57.476 33.333 3.21 0.00 0.00 1.40
2306 6571 6.919775 ACGCTATAGATTGGTAGAGGATTT 57.080 37.500 3.21 0.00 0.00 2.17
2307 6572 7.450634 TGTTACGCTATAGATTGGTAGAGGATT 59.549 37.037 3.21 0.00 0.00 3.01
2308 6573 6.946583 TGTTACGCTATAGATTGGTAGAGGAT 59.053 38.462 3.21 0.00 0.00 3.24
2309 6574 6.301486 TGTTACGCTATAGATTGGTAGAGGA 58.699 40.000 3.21 0.00 0.00 3.71
2310 6575 6.570672 TGTTACGCTATAGATTGGTAGAGG 57.429 41.667 3.21 0.00 0.00 3.69
2311 6576 6.087522 GCTGTTACGCTATAGATTGGTAGAG 58.912 44.000 3.21 2.09 0.00 2.43
2312 6577 5.533528 TGCTGTTACGCTATAGATTGGTAGA 59.466 40.000 3.21 0.00 0.00 2.59
2313 6578 5.629849 GTGCTGTTACGCTATAGATTGGTAG 59.370 44.000 3.21 0.00 0.00 3.18
2314 6579 5.068067 TGTGCTGTTACGCTATAGATTGGTA 59.932 40.000 3.21 0.00 0.00 3.25
2315 6580 4.142026 TGTGCTGTTACGCTATAGATTGGT 60.142 41.667 3.21 0.00 0.00 3.67
2316 6581 4.368315 TGTGCTGTTACGCTATAGATTGG 58.632 43.478 3.21 0.00 0.00 3.16
2317 6582 5.691754 TCATGTGCTGTTACGCTATAGATTG 59.308 40.000 3.21 0.00 0.00 2.67
2318 6583 5.692204 GTCATGTGCTGTTACGCTATAGATT 59.308 40.000 3.21 0.00 0.00 2.40
2319 6584 5.221244 TGTCATGTGCTGTTACGCTATAGAT 60.221 40.000 3.21 0.00 0.00 1.98
2320 6585 4.097286 TGTCATGTGCTGTTACGCTATAGA 59.903 41.667 3.21 0.00 0.00 1.98
2321 6586 4.359706 TGTCATGTGCTGTTACGCTATAG 58.640 43.478 0.00 0.00 0.00 1.31
2322 6587 4.379339 TGTCATGTGCTGTTACGCTATA 57.621 40.909 0.00 0.00 0.00 1.31
2323 6588 3.245518 TGTCATGTGCTGTTACGCTAT 57.754 42.857 0.00 0.00 0.00 2.97
2324 6589 2.734276 TGTCATGTGCTGTTACGCTA 57.266 45.000 0.00 0.00 0.00 4.26
2325 6590 1.877637 TTGTCATGTGCTGTTACGCT 58.122 45.000 0.00 0.00 0.00 5.07
2326 6591 2.286713 TGTTTGTCATGTGCTGTTACGC 60.287 45.455 0.00 0.00 0.00 4.42
2327 6592 3.600717 TGTTTGTCATGTGCTGTTACG 57.399 42.857 0.00 0.00 0.00 3.18
2328 6593 5.976534 TGAAATGTTTGTCATGTGCTGTTAC 59.023 36.000 0.00 0.00 36.81 2.50
2329 6594 6.141560 TGAAATGTTTGTCATGTGCTGTTA 57.858 33.333 0.00 0.00 36.81 2.41
2330 6595 5.008619 TGAAATGTTTGTCATGTGCTGTT 57.991 34.783 0.00 0.00 36.81 3.16
2331 6596 4.652421 TGAAATGTTTGTCATGTGCTGT 57.348 36.364 0.00 0.00 36.81 4.40
2332 6597 5.970140 TTTGAAATGTTTGTCATGTGCTG 57.030 34.783 0.00 0.00 36.81 4.41
2333 6598 5.006941 GCTTTTGAAATGTTTGTCATGTGCT 59.993 36.000 0.00 0.00 36.81 4.40
2334 6599 5.199726 GCTTTTGAAATGTTTGTCATGTGC 58.800 37.500 0.00 0.00 36.81 4.57
2335 6600 6.347270 TGCTTTTGAAATGTTTGTCATGTG 57.653 33.333 0.00 0.00 36.81 3.21
2336 6601 6.981762 TTGCTTTTGAAATGTTTGTCATGT 57.018 29.167 0.00 0.00 36.81 3.21
2337 6602 8.844441 ATTTTGCTTTTGAAATGTTTGTCATG 57.156 26.923 0.00 0.00 36.81 3.07
2338 6603 9.857957 AAATTTTGCTTTTGAAATGTTTGTCAT 57.142 22.222 0.00 0.00 38.57 3.06
2339 6604 9.688592 AAAATTTTGCTTTTGAAATGTTTGTCA 57.311 22.222 1.75 0.00 0.00 3.58
2341 6606 8.848528 CGAAAATTTTGCTTTTGAAATGTTTGT 58.151 25.926 8.47 0.00 0.00 2.83
2342 6607 7.835541 GCGAAAATTTTGCTTTTGAAATGTTTG 59.164 29.630 8.47 0.00 31.38 2.93
2343 6608 7.540055 TGCGAAAATTTTGCTTTTGAAATGTTT 59.460 25.926 17.73 0.00 0.00 2.83
2344 6609 7.025963 TGCGAAAATTTTGCTTTTGAAATGTT 58.974 26.923 17.73 0.00 0.00 2.71
2345 6610 6.549952 TGCGAAAATTTTGCTTTTGAAATGT 58.450 28.000 17.73 0.00 0.00 2.71
2346 6611 7.321532 GTTGCGAAAATTTTGCTTTTGAAATG 58.678 30.769 17.73 0.00 0.00 2.32
2347 6612 6.194325 CGTTGCGAAAATTTTGCTTTTGAAAT 59.806 30.769 17.73 0.00 0.00 2.17
2348 6613 5.506138 CGTTGCGAAAATTTTGCTTTTGAAA 59.494 32.000 17.73 1.43 0.00 2.69
2349 6614 5.018240 CGTTGCGAAAATTTTGCTTTTGAA 58.982 33.333 17.73 2.09 0.00 2.69
2350 6615 4.493220 CCGTTGCGAAAATTTTGCTTTTGA 60.493 37.500 17.73 0.00 0.00 2.69
2351 6616 3.718377 CCGTTGCGAAAATTTTGCTTTTG 59.282 39.130 17.73 6.35 0.00 2.44
2352 6617 3.619038 TCCGTTGCGAAAATTTTGCTTTT 59.381 34.783 17.73 0.00 0.00 2.27
2353 6618 3.190874 TCCGTTGCGAAAATTTTGCTTT 58.809 36.364 17.73 0.00 0.00 3.51
2354 6619 2.815478 TCCGTTGCGAAAATTTTGCTT 58.185 38.095 17.73 0.00 0.00 3.91
2355 6620 2.500509 TCCGTTGCGAAAATTTTGCT 57.499 40.000 17.73 0.00 0.00 3.91
2356 6621 2.728839 TCATCCGTTGCGAAAATTTTGC 59.271 40.909 8.47 10.86 0.00 3.68
2357 6622 4.620609 TGATCATCCGTTGCGAAAATTTTG 59.379 37.500 8.47 2.31 0.00 2.44
2358 6623 4.804108 TGATCATCCGTTGCGAAAATTTT 58.196 34.783 2.28 2.28 0.00 1.82
2359 6624 4.414852 CTGATCATCCGTTGCGAAAATTT 58.585 39.130 0.00 0.00 0.00 1.82
2360 6625 3.731867 GCTGATCATCCGTTGCGAAAATT 60.732 43.478 0.00 0.00 0.00 1.82
2361 6626 2.223340 GCTGATCATCCGTTGCGAAAAT 60.223 45.455 0.00 0.00 0.00 1.82
2362 6627 1.130373 GCTGATCATCCGTTGCGAAAA 59.870 47.619 0.00 0.00 0.00 2.29
2363 6628 0.726827 GCTGATCATCCGTTGCGAAA 59.273 50.000 0.00 0.00 0.00 3.46
2364 6629 0.108186 AGCTGATCATCCGTTGCGAA 60.108 50.000 0.00 0.00 0.00 4.70
2365 6630 0.108186 AAGCTGATCATCCGTTGCGA 60.108 50.000 0.00 0.00 0.00 5.10
2366 6631 0.027194 CAAGCTGATCATCCGTTGCG 59.973 55.000 0.00 0.00 0.00 4.85
2367 6632 0.248377 GCAAGCTGATCATCCGTTGC 60.248 55.000 12.77 12.77 34.10 4.17
2368 6633 1.089112 TGCAAGCTGATCATCCGTTG 58.911 50.000 0.00 0.00 0.00 4.10
2369 6634 2.048444 ATGCAAGCTGATCATCCGTT 57.952 45.000 0.00 0.00 0.00 4.44
2370 6635 2.916702 TATGCAAGCTGATCATCCGT 57.083 45.000 0.00 0.00 0.00 4.69
2371 6636 2.483106 CCTTATGCAAGCTGATCATCCG 59.517 50.000 0.00 0.00 0.00 4.18
2372 6637 2.818432 CCCTTATGCAAGCTGATCATCC 59.182 50.000 0.00 0.00 0.00 3.51
2373 6638 3.484407 ACCCTTATGCAAGCTGATCATC 58.516 45.455 0.00 0.00 0.00 2.92
2374 6639 3.589951 ACCCTTATGCAAGCTGATCAT 57.410 42.857 0.00 0.00 0.00 2.45
2375 6640 3.370840 AACCCTTATGCAAGCTGATCA 57.629 42.857 0.00 0.00 0.00 2.92
2376 6641 3.696051 TCAAACCCTTATGCAAGCTGATC 59.304 43.478 0.00 0.00 0.00 2.92
2377 6642 3.698040 CTCAAACCCTTATGCAAGCTGAT 59.302 43.478 0.00 0.00 0.00 2.90
2378 6643 3.084039 CTCAAACCCTTATGCAAGCTGA 58.916 45.455 0.00 0.00 0.00 4.26
2379 6644 2.165030 CCTCAAACCCTTATGCAAGCTG 59.835 50.000 0.00 0.00 0.00 4.24
2380 6645 2.041620 TCCTCAAACCCTTATGCAAGCT 59.958 45.455 0.00 0.00 0.00 3.74
2381 6646 2.424956 CTCCTCAAACCCTTATGCAAGC 59.575 50.000 0.00 0.00 0.00 4.01
2382 6647 3.955471 TCTCCTCAAACCCTTATGCAAG 58.045 45.455 0.00 0.00 0.00 4.01
2383 6648 4.380843 TTCTCCTCAAACCCTTATGCAA 57.619 40.909 0.00 0.00 0.00 4.08
2384 6649 4.380843 TTTCTCCTCAAACCCTTATGCA 57.619 40.909 0.00 0.00 0.00 3.96
2385 6650 4.380973 GCTTTTCTCCTCAAACCCTTATGC 60.381 45.833 0.00 0.00 0.00 3.14
2386 6651 4.766891 TGCTTTTCTCCTCAAACCCTTATG 59.233 41.667 0.00 0.00 0.00 1.90
2387 6652 4.767409 GTGCTTTTCTCCTCAAACCCTTAT 59.233 41.667 0.00 0.00 0.00 1.73
2388 6653 4.142038 GTGCTTTTCTCCTCAAACCCTTA 58.858 43.478 0.00 0.00 0.00 2.69
2389 6654 2.959030 GTGCTTTTCTCCTCAAACCCTT 59.041 45.455 0.00 0.00 0.00 3.95
2390 6655 2.091885 TGTGCTTTTCTCCTCAAACCCT 60.092 45.455 0.00 0.00 0.00 4.34
2391 6656 2.294512 CTGTGCTTTTCTCCTCAAACCC 59.705 50.000 0.00 0.00 0.00 4.11
2392 6657 2.952310 ACTGTGCTTTTCTCCTCAAACC 59.048 45.455 0.00 0.00 0.00 3.27
2393 6658 4.096382 TCAACTGTGCTTTTCTCCTCAAAC 59.904 41.667 0.00 0.00 0.00 2.93
2394 6659 4.269183 TCAACTGTGCTTTTCTCCTCAAA 58.731 39.130 0.00 0.00 0.00 2.69
2395 6660 3.884895 TCAACTGTGCTTTTCTCCTCAA 58.115 40.909 0.00 0.00 0.00 3.02
2396 6661 3.558931 TCAACTGTGCTTTTCTCCTCA 57.441 42.857 0.00 0.00 0.00 3.86
2397 6662 3.817647 ACATCAACTGTGCTTTTCTCCTC 59.182 43.478 0.00 0.00 36.48 3.71
2398 6663 3.825328 ACATCAACTGTGCTTTTCTCCT 58.175 40.909 0.00 0.00 36.48 3.69
2409 6674 3.243068 GCGTTTTCTTCCACATCAACTGT 60.243 43.478 0.00 0.00 39.20 3.55
2410 6675 3.243035 TGCGTTTTCTTCCACATCAACTG 60.243 43.478 0.00 0.00 0.00 3.16
2411 6676 2.948979 TGCGTTTTCTTCCACATCAACT 59.051 40.909 0.00 0.00 0.00 3.16
2412 6677 3.347958 TGCGTTTTCTTCCACATCAAC 57.652 42.857 0.00 0.00 0.00 3.18
2413 6678 3.380004 ACTTGCGTTTTCTTCCACATCAA 59.620 39.130 0.00 0.00 0.00 2.57
2414 6679 2.948979 ACTTGCGTTTTCTTCCACATCA 59.051 40.909 0.00 0.00 0.00 3.07
2415 6680 3.626028 ACTTGCGTTTTCTTCCACATC 57.374 42.857 0.00 0.00 0.00 3.06
2416 6681 3.502211 CCTACTTGCGTTTTCTTCCACAT 59.498 43.478 0.00 0.00 0.00 3.21
2417 6682 2.875933 CCTACTTGCGTTTTCTTCCACA 59.124 45.455 0.00 0.00 0.00 4.17
2418 6683 2.225727 CCCTACTTGCGTTTTCTTCCAC 59.774 50.000 0.00 0.00 0.00 4.02
2419 6684 2.158726 ACCCTACTTGCGTTTTCTTCCA 60.159 45.455 0.00 0.00 0.00 3.53
2420 6685 2.483106 GACCCTACTTGCGTTTTCTTCC 59.517 50.000 0.00 0.00 0.00 3.46
2421 6686 3.135994 TGACCCTACTTGCGTTTTCTTC 58.864 45.455 0.00 0.00 0.00 2.87
2422 6687 3.202829 TGACCCTACTTGCGTTTTCTT 57.797 42.857 0.00 0.00 0.00 2.52
2423 6688 2.922740 TGACCCTACTTGCGTTTTCT 57.077 45.000 0.00 0.00 0.00 2.52
2424 6689 2.350484 GCTTGACCCTACTTGCGTTTTC 60.350 50.000 0.00 0.00 0.00 2.29
2425 6690 1.607148 GCTTGACCCTACTTGCGTTTT 59.393 47.619 0.00 0.00 0.00 2.43
2426 6691 1.235724 GCTTGACCCTACTTGCGTTT 58.764 50.000 0.00 0.00 0.00 3.60
2427 6692 0.107831 TGCTTGACCCTACTTGCGTT 59.892 50.000 0.00 0.00 0.00 4.84
2428 6693 0.107831 TTGCTTGACCCTACTTGCGT 59.892 50.000 0.00 0.00 0.00 5.24
2429 6694 1.234821 TTTGCTTGACCCTACTTGCG 58.765 50.000 0.00 0.00 0.00 4.85
2430 6695 2.360801 TGTTTTGCTTGACCCTACTTGC 59.639 45.455 0.00 0.00 0.00 4.01
2436 6701 2.024414 GACAGTGTTTTGCTTGACCCT 58.976 47.619 0.00 0.00 0.00 4.34
2437 6702 1.067060 GGACAGTGTTTTGCTTGACCC 59.933 52.381 0.00 0.00 0.00 4.46
2439 6704 2.286418 CGAGGACAGTGTTTTGCTTGAC 60.286 50.000 0.00 0.00 0.00 3.18
2440 6705 1.939934 CGAGGACAGTGTTTTGCTTGA 59.060 47.619 0.00 0.00 0.00 3.02
2447 6712 2.040178 AGGAAGACGAGGACAGTGTTT 58.960 47.619 0.00 0.00 0.00 2.83
2453 6718 0.114560 AGGGAAGGAAGACGAGGACA 59.885 55.000 0.00 0.00 0.00 4.02
2455 6720 2.913603 TTAGGGAAGGAAGACGAGGA 57.086 50.000 0.00 0.00 0.00 3.71
2456 6721 2.365941 GGATTAGGGAAGGAAGACGAGG 59.634 54.545 0.00 0.00 0.00 4.63
2462 6728 2.300437 CGCCTAGGATTAGGGAAGGAAG 59.700 54.545 14.75 0.00 45.66 3.46
2469 6735 1.187087 CTAGCCGCCTAGGATTAGGG 58.813 60.000 14.75 5.93 45.66 3.53
2477 6743 1.523938 GTTTGCCCTAGCCGCCTAG 60.524 63.158 0.00 0.00 40.64 3.02
2491 6757 1.801178 GCGTTTGGAGGAGAGAGTTTG 59.199 52.381 0.00 0.00 0.00 2.93
2495 6761 1.153745 CGGCGTTTGGAGGAGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
2497 6763 2.815647 GCGGCGTTTGGAGGAGAG 60.816 66.667 9.37 0.00 0.00 3.20
2499 6765 3.121030 CAGCGGCGTTTGGAGGAG 61.121 66.667 9.37 0.00 0.00 3.69
2516 6782 3.056313 GAATCCACAGGCTTGCCGC 62.056 63.158 5.95 0.00 38.13 6.53
2517 6783 2.753966 CGAATCCACAGGCTTGCCG 61.754 63.158 5.95 4.19 0.00 5.69
2523 6789 1.522580 GAGAGGCGAATCCACAGGC 60.523 63.158 0.00 0.00 37.29 4.85
2585 6851 1.065701 CTAATCGGACCGGAGACACTG 59.934 57.143 15.25 0.00 0.00 3.66
2586 6852 1.340795 ACTAATCGGACCGGAGACACT 60.341 52.381 15.25 0.00 0.00 3.55
2590 6856 3.287867 AACTACTAATCGGACCGGAGA 57.712 47.619 15.25 4.75 0.00 3.71
2596 6862 6.322456 ACCCTAACCTAAACTACTAATCGGAC 59.678 42.308 0.00 0.00 0.00 4.79
2599 6865 8.473219 AGAAACCCTAACCTAAACTACTAATCG 58.527 37.037 0.00 0.00 0.00 3.34
2603 6869 9.467796 GACTAGAAACCCTAACCTAAACTACTA 57.532 37.037 0.00 0.00 0.00 1.82
2604 6870 7.121907 CGACTAGAAACCCTAACCTAAACTACT 59.878 40.741 0.00 0.00 0.00 2.57
2605 6871 7.094162 ACGACTAGAAACCCTAACCTAAACTAC 60.094 40.741 0.00 0.00 0.00 2.73
2606 6872 6.948309 ACGACTAGAAACCCTAACCTAAACTA 59.052 38.462 0.00 0.00 0.00 2.24
2607 6873 5.777223 ACGACTAGAAACCCTAACCTAAACT 59.223 40.000 0.00 0.00 0.00 2.66
2608 6874 5.866092 CACGACTAGAAACCCTAACCTAAAC 59.134 44.000 0.00 0.00 0.00 2.01
2611 6877 4.019174 CCACGACTAGAAACCCTAACCTA 58.981 47.826 0.00 0.00 0.00 3.08
2619 6885 1.012486 CGCACCCACGACTAGAAACC 61.012 60.000 0.00 0.00 34.06 3.27
2624 6890 2.126071 CACCGCACCCACGACTAG 60.126 66.667 0.00 0.00 34.06 2.57
2639 6909 2.887568 CGCCATCTGACCGAGCAC 60.888 66.667 0.00 0.00 0.00 4.40
2647 6917 0.175760 GAAGTAGTGCCGCCATCTGA 59.824 55.000 0.00 0.00 0.00 3.27
2648 6918 0.176680 AGAAGTAGTGCCGCCATCTG 59.823 55.000 0.00 0.00 0.00 2.90
2649 6919 0.905357 AAGAAGTAGTGCCGCCATCT 59.095 50.000 0.00 0.00 0.00 2.90
2652 6922 1.080093 CGAAGAAGTAGTGCCGCCA 60.080 57.895 0.00 0.00 0.00 5.69
2655 6925 2.349297 AACTCGAAGAAGTAGTGCCG 57.651 50.000 0.00 0.00 34.09 5.69
2658 6928 5.402867 GGAAGACAAACTCGAAGAAGTAGTG 59.597 44.000 0.00 0.00 34.09 2.74
2659 6929 5.530712 GGAAGACAAACTCGAAGAAGTAGT 58.469 41.667 0.00 0.00 34.09 2.73
2661 6931 4.543692 CGGAAGACAAACTCGAAGAAGTA 58.456 43.478 0.00 0.00 34.09 2.24
2666 6936 1.429463 CCCGGAAGACAAACTCGAAG 58.571 55.000 0.73 0.00 0.00 3.79
2677 6947 0.541863 GAGGATCAAAGCCCGGAAGA 59.458 55.000 0.73 0.00 33.17 2.87
2688 6958 1.743958 GACGAACTCGAGGAGGATCAA 59.256 52.381 18.41 0.00 43.02 2.57
2689 6959 1.380524 GACGAACTCGAGGAGGATCA 58.619 55.000 18.41 0.00 43.02 2.92
2717 6987 1.101635 CCGGAGCTCCATCGACTACA 61.102 60.000 31.67 0.00 35.14 2.74
2723 6993 3.544167 CTACGCCGGAGCTCCATCG 62.544 68.421 31.67 31.00 36.60 3.84
2726 6996 1.735376 GAATCTACGCCGGAGCTCCA 61.735 60.000 31.67 11.45 36.60 3.86
2728 6998 1.007154 GGAATCTACGCCGGAGCTC 60.007 63.158 5.05 4.71 36.60 4.09
2730 7000 1.007154 GAGGAATCTACGCCGGAGC 60.007 63.158 5.05 0.00 0.00 4.70
2736 7006 2.243810 AGAGATGGGAGGAATCTACGC 58.756 52.381 0.00 0.00 34.50 4.42
2749 7019 1.000896 ACCGCCCCAAAAGAGATGG 60.001 57.895 0.00 0.00 37.71 3.51
2751 7021 0.035056 CTCACCGCCCCAAAAGAGAT 60.035 55.000 0.00 0.00 0.00 2.75
2756 7026 0.250989 CTAACCTCACCGCCCCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
2764 7034 1.271656 ACGAGAAACCTAACCTCACCG 59.728 52.381 0.00 0.00 0.00 4.94
2791 7062 1.675641 ACCTGGCACCAAATCTCGC 60.676 57.895 0.00 0.00 0.00 5.03
2804 7075 4.412796 TTCATAGATCTGAAGCACCTGG 57.587 45.455 5.18 0.00 31.65 4.45
2824 7095 4.320494 GCAGTCGTCACCATTGAATCTTTT 60.320 41.667 0.00 0.00 31.90 2.27
2825 7096 3.189287 GCAGTCGTCACCATTGAATCTTT 59.811 43.478 0.00 0.00 31.90 2.52
2827 7098 2.350522 GCAGTCGTCACCATTGAATCT 58.649 47.619 0.00 0.00 31.90 2.40
2829 7100 1.078709 CGCAGTCGTCACCATTGAAT 58.921 50.000 0.00 0.00 31.90 2.57
2835 7106 4.357947 GAGCCGCAGTCGTCACCA 62.358 66.667 0.00 0.00 0.00 4.17
2837 7108 4.357947 TGGAGCCGCAGTCGTCAC 62.358 66.667 0.00 0.00 0.00 3.67
2838 7109 4.056125 CTGGAGCCGCAGTCGTCA 62.056 66.667 0.00 0.00 0.00 4.35
2877 7148 2.027625 CCGGGAAGTCTTCGTGCAC 61.028 63.158 6.82 6.82 0.00 4.57
2879 7150 3.119096 GCCGGGAAGTCTTCGTGC 61.119 66.667 2.18 5.37 0.00 5.34
2891 7162 1.308069 CCTTGTTGATGACAGCCGGG 61.308 60.000 2.18 0.00 39.94 5.73
2892 7163 0.606401 ACCTTGTTGATGACAGCCGG 60.606 55.000 0.00 0.00 39.94 6.13
2893 7164 1.238439 AACCTTGTTGATGACAGCCG 58.762 50.000 0.00 0.00 39.94 5.52
2895 7166 4.546570 GGTTTAACCTTGTTGATGACAGC 58.453 43.478 6.92 0.00 39.94 4.40
2896 7167 4.320202 CCGGTTTAACCTTGTTGATGACAG 60.320 45.833 12.66 0.00 35.66 3.51
2897 7168 3.566322 CCGGTTTAACCTTGTTGATGACA 59.434 43.478 12.66 0.00 35.66 3.58
2898 7169 3.610821 GCCGGTTTAACCTTGTTGATGAC 60.611 47.826 12.66 0.00 35.66 3.06
2899 7170 2.554893 GCCGGTTTAACCTTGTTGATGA 59.445 45.455 12.66 0.00 35.66 2.92
2900 7171 2.556622 AGCCGGTTTAACCTTGTTGATG 59.443 45.455 12.66 0.00 35.66 3.07
2901 7172 2.817844 GAGCCGGTTTAACCTTGTTGAT 59.182 45.455 12.66 0.00 35.66 2.57
2903 7174 1.268625 GGAGCCGGTTTAACCTTGTTG 59.731 52.381 12.66 0.00 35.66 3.33
2904 7175 1.612676 GGAGCCGGTTTAACCTTGTT 58.387 50.000 12.66 1.23 35.66 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.