Multiple sequence alignment - TraesCS7D01G491300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G491300 chr7D 100.000 5334 0 0 2430 7763 600749910 600755243 0.000000e+00 9851.0
1 TraesCS7D01G491300 chr7D 97.547 3709 82 3 2430 6130 263003644 263007351 0.000000e+00 6336.0
2 TraesCS7D01G491300 chr7D 100.000 1603 0 0 567 2169 600748047 600749649 0.000000e+00 2961.0
3 TraesCS7D01G491300 chr7D 94.220 692 14 3 1471 2149 263002923 263003601 0.000000e+00 1033.0
4 TraesCS7D01G491300 chr7D 88.753 489 41 7 991 1468 600703656 600703171 3.120000e-163 586.0
5 TraesCS7D01G491300 chr7D 100.000 239 0 0 1 239 600747481 600747719 7.150000e-120 442.0
6 TraesCS7D01G491300 chr7D 93.651 189 12 0 6545 6733 600702603 600702415 4.590000e-72 283.0
7 TraesCS7D01G491300 chr7D 78.105 475 82 16 1001 1468 600873620 600874079 1.650000e-71 281.0
8 TraesCS7D01G491300 chr7D 84.000 275 36 5 6211 6479 600703043 600702771 2.780000e-64 257.0
9 TraesCS7D01G491300 chr4A 93.441 3705 213 8 2430 6124 85052953 85056637 0.000000e+00 5469.0
10 TraesCS7D01G491300 chr4A 93.042 3708 245 7 2430 6126 616118136 616114431 0.000000e+00 5406.0
11 TraesCS7D01G491300 chr4A 91.942 695 42 3 1469 2149 85052218 85052912 0.000000e+00 961.0
12 TraesCS7D01G491300 chr7A 93.195 3703 244 2 2430 6124 638137868 638134166 0.000000e+00 5435.0
13 TraesCS7D01G491300 chr7A 93.313 643 23 10 6131 6768 692612846 692613473 0.000000e+00 931.0
14 TraesCS7D01G491300 chr7A 89.062 704 61 7 1470 2159 638138601 638137900 0.000000e+00 859.0
15 TraesCS7D01G491300 chr7A 89.800 549 46 6 675 1215 692611077 692611623 0.000000e+00 695.0
16 TraesCS7D01G491300 chr7A 86.466 532 50 11 942 1468 692523442 692522928 1.460000e-156 564.0
17 TraesCS7D01G491300 chr7A 85.675 363 46 4 880 1239 692617283 692616924 2.040000e-100 377.0
18 TraesCS7D01G491300 chr7A 93.651 189 12 0 6545 6733 692522290 692522102 4.590000e-72 283.0
19 TraesCS7D01G491300 chr7A 86.328 256 15 9 1212 1466 692612621 692612857 2.150000e-65 261.0
20 TraesCS7D01G491300 chr7A 91.892 185 15 0 6544 6728 692615965 692615781 7.730000e-65 259.0
21 TraesCS7D01G491300 chr7A 86.207 232 31 1 6249 6480 692522754 692522524 4.650000e-62 250.0
22 TraesCS7D01G491300 chr7A 83.588 262 24 11 1220 1468 692616911 692616656 2.180000e-55 228.0
23 TraesCS7D01G491300 chr7A 85.612 139 20 0 1074 1212 692762139 692762277 6.280000e-31 147.0
24 TraesCS7D01G491300 chr7A 97.059 34 1 0 6765 6798 236800071 236800038 3.030000e-04 58.4
25 TraesCS7D01G491300 chr4D 97.044 2639 66 2 3499 6125 324230765 324233403 0.000000e+00 4431.0
26 TraesCS7D01G491300 chr4D 91.449 1918 164 0 3802 5719 484820447 484822364 0.000000e+00 2634.0
27 TraesCS7D01G491300 chr4D 91.228 114 8 2 1098 1211 456047127 456047238 3.750000e-33 154.0
28 TraesCS7D01G491300 chr3D 83.683 2715 427 13 3416 6126 259211872 259214574 0.000000e+00 2545.0
29 TraesCS7D01G491300 chr6A 93.829 1588 97 1 4540 6126 203000006 202998419 0.000000e+00 2388.0
30 TraesCS7D01G491300 chr6A 97.143 35 1 0 6768 6802 447880732 447880698 8.410000e-05 60.2
31 TraesCS7D01G491300 chr5A 92.957 1576 108 2 4494 6069 382543079 382541507 0.000000e+00 2292.0
32 TraesCS7D01G491300 chr5A 97.894 997 18 2 6768 7763 43049468 43048474 0.000000e+00 1722.0
33 TraesCS7D01G491300 chr7B 82.552 2602 436 17 3531 6123 601918848 601921440 0.000000e+00 2274.0
34 TraesCS7D01G491300 chr7B 94.072 641 32 3 6130 6768 679987407 679988043 0.000000e+00 968.0
35 TraesCS7D01G491300 chr7B 87.780 491 55 3 979 1468 679931005 679930519 3.140000e-158 569.0
36 TraesCS7D01G491300 chr7B 89.316 468 22 6 815 1264 679986655 679987112 5.260000e-156 562.0
37 TraesCS7D01G491300 chr7B 84.630 540 56 15 940 1468 680005094 680004571 5.370000e-141 512.0
38 TraesCS7D01G491300 chr7B 82.597 385 37 21 1084 1468 680095603 680095957 5.850000e-81 313.0
39 TraesCS7D01G491300 chr7B 92.574 202 15 0 1267 1468 679987220 679987421 2.740000e-74 291.0
40 TraesCS7D01G491300 chr7B 93.651 189 12 0 6545 6733 679930028 679929840 4.590000e-72 283.0
41 TraesCS7D01G491300 chr7B 92.308 169 13 0 6560 6728 679998626 679998458 2.800000e-59 241.0
42 TraesCS7D01G491300 chr7B 82.857 245 39 2 6211 6453 679930396 679930153 4.720000e-52 217.0
43 TraesCS7D01G491300 chr7B 75.117 213 51 2 2830 3041 578789833 578790044 1.780000e-16 99.0
44 TraesCS7D01G491300 chr3B 78.941 2322 449 29 3813 6123 258697539 258699831 0.000000e+00 1543.0
45 TraesCS7D01G491300 chr2B 98.321 536 9 0 7082 7617 579996957 579997492 0.000000e+00 941.0
46 TraesCS7D01G491300 chr2B 98.333 120 1 1 7645 7763 580000192 580000311 7.890000e-50 209.0
47 TraesCS7D01G491300 chr2B 93.204 103 7 0 6857 6959 794647394 794647496 1.350000e-32 152.0
48 TraesCS7D01G491300 chr2B 93.204 103 7 0 6857 6959 794736998 794737100 1.350000e-32 152.0
49 TraesCS7D01G491300 chr2B 92.632 95 5 2 6768 6862 794646874 794646966 1.360000e-27 135.0
50 TraesCS7D01G491300 chr2B 90.526 95 7 2 6768 6862 794736478 794736570 2.940000e-24 124.0
51 TraesCS7D01G491300 chr2B 100.000 31 0 0 7601 7631 580000164 580000194 3.030000e-04 58.4
52 TraesCS7D01G491300 chr1D 85.124 121 17 1 10 129 449273657 449273777 1.060000e-23 122.0
53 TraesCS7D01G491300 chr4B 80.769 156 28 2 1312 1466 569628940 569629094 3.800000e-23 121.0
54 TraesCS7D01G491300 chr6B 86.869 99 10 3 24 120 1259980 1260077 2.960000e-19 108.0
55 TraesCS7D01G491300 chr6B 97.059 34 1 0 6765 6798 174565720 174565687 3.030000e-04 58.4
56 TraesCS7D01G491300 chr6B 97.059 34 1 0 6765 6798 439072446 439072413 3.030000e-04 58.4
57 TraesCS7D01G491300 chr5B 97.222 36 1 0 6766 6801 248650191 248650226 2.340000e-05 62.1
58 TraesCS7D01G491300 chr6D 97.059 34 1 0 6768 6801 73793725 73793692 3.030000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G491300 chr7D 600747481 600755243 7762 False 4418.000000 9851 100.000000 1 7763 3 chr7D.!!$F3 7762
1 TraesCS7D01G491300 chr7D 263002923 263007351 4428 False 3684.500000 6336 95.883500 1471 6130 2 chr7D.!!$F2 4659
2 TraesCS7D01G491300 chr7D 600702415 600703656 1241 True 375.333333 586 88.801333 991 6733 3 chr7D.!!$R1 5742
3 TraesCS7D01G491300 chr4A 616114431 616118136 3705 True 5406.000000 5406 93.042000 2430 6126 1 chr4A.!!$R1 3696
4 TraesCS7D01G491300 chr4A 85052218 85056637 4419 False 3215.000000 5469 92.691500 1469 6124 2 chr4A.!!$F1 4655
5 TraesCS7D01G491300 chr7A 638134166 638138601 4435 True 3147.000000 5435 91.128500 1470 6124 2 chr7A.!!$R2 4654
6 TraesCS7D01G491300 chr7A 692611077 692613473 2396 False 629.000000 931 89.813667 675 6768 3 chr7A.!!$F2 6093
7 TraesCS7D01G491300 chr7A 692522102 692523442 1340 True 365.666667 564 88.774667 942 6733 3 chr7A.!!$R3 5791
8 TraesCS7D01G491300 chr7A 692615781 692617283 1502 True 288.000000 377 87.051667 880 6728 3 chr7A.!!$R4 5848
9 TraesCS7D01G491300 chr4D 324230765 324233403 2638 False 4431.000000 4431 97.044000 3499 6125 1 chr4D.!!$F1 2626
10 TraesCS7D01G491300 chr4D 484820447 484822364 1917 False 2634.000000 2634 91.449000 3802 5719 1 chr4D.!!$F3 1917
11 TraesCS7D01G491300 chr3D 259211872 259214574 2702 False 2545.000000 2545 83.683000 3416 6126 1 chr3D.!!$F1 2710
12 TraesCS7D01G491300 chr6A 202998419 203000006 1587 True 2388.000000 2388 93.829000 4540 6126 1 chr6A.!!$R1 1586
13 TraesCS7D01G491300 chr5A 382541507 382543079 1572 True 2292.000000 2292 92.957000 4494 6069 1 chr5A.!!$R2 1575
14 TraesCS7D01G491300 chr5A 43048474 43049468 994 True 1722.000000 1722 97.894000 6768 7763 1 chr5A.!!$R1 995
15 TraesCS7D01G491300 chr7B 601918848 601921440 2592 False 2274.000000 2274 82.552000 3531 6123 1 chr7B.!!$F2 2592
16 TraesCS7D01G491300 chr7B 679986655 679988043 1388 False 607.000000 968 91.987333 815 6768 3 chr7B.!!$F4 5953
17 TraesCS7D01G491300 chr7B 680004571 680005094 523 True 512.000000 512 84.630000 940 1468 1 chr7B.!!$R2 528
18 TraesCS7D01G491300 chr7B 679929840 679931005 1165 True 356.333333 569 88.096000 979 6733 3 chr7B.!!$R3 5754
19 TraesCS7D01G491300 chr3B 258697539 258699831 2292 False 1543.000000 1543 78.941000 3813 6123 1 chr3B.!!$F1 2310
20 TraesCS7D01G491300 chr2B 579996957 580000311 3354 False 402.800000 941 98.884667 7082 7763 3 chr2B.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.034896 TCTCAGGTCCGTTGGCTTTC 59.965 55.0 0.00 0.00 0.00 2.62 F
216 217 0.102481 ACGGTCTATCACGGCATCAC 59.898 55.0 0.00 0.00 0.00 3.06 F
588 589 0.105039 CGCCTCCCTCACCTATTGAC 59.895 60.0 0.00 0.00 0.00 3.18 F
665 666 0.107654 GCATTACTGAGGCGACCCTT 60.108 55.0 0.00 0.00 43.12 3.95 F
805 808 0.167470 CTGAACCGCTTGCACTGATG 59.833 55.0 0.00 0.00 0.00 3.07 F
2165 3340 0.034767 ATGTGTGAGGCATGACTGGG 60.035 55.0 5.31 0.00 0.00 4.45 F
3117 4299 0.673985 CTTCGACCACTGTCCACTCA 59.326 55.0 0.00 0.00 38.32 3.41 F
4195 5380 0.464373 ATCGCCAAGGCATTCGACAT 60.464 50.0 12.19 0.00 42.06 3.06 F
4790 5978 0.251354 CCTGCAAAGCCTCTCTGCTA 59.749 55.0 0.00 0.00 41.80 3.49 F
5707 6909 1.097232 CACGACATCATGGCATGGTT 58.903 50.0 26.15 12.27 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1271 2405 0.935196 GCCGATTTGTACCGATGGTC 59.065 55.000 0.00 0.0 37.09 4.02 R
1447 2595 1.727335 GCTCGAGGTAGAACTTGTTGC 59.273 52.381 15.58 0.0 0.00 4.17 R
2149 3324 2.352422 GCCCAGTCATGCCTCACA 59.648 61.111 0.00 0.0 0.00 3.58 R
2150 3325 2.821366 CGCCCAGTCATGCCTCAC 60.821 66.667 0.00 0.0 0.00 3.51 R
2866 4048 0.803768 CTTGTCAGCGATGGAGGTCG 60.804 60.000 0.00 0.0 44.14 4.79 R
3887 5071 0.460109 GTTTGCGAAATCCCATGCCC 60.460 55.000 0.00 0.0 0.00 5.36 R
4775 5963 1.539929 CGGGATAGCAGAGAGGCTTTG 60.540 57.143 0.00 0.0 42.71 2.77 R
5331 6522 0.249280 ACATATTCGATGACCGCGCA 60.249 50.000 8.75 0.0 38.37 6.09 R
6289 7799 0.180642 TGTTGGCCGTTGTACTTGGA 59.819 50.000 0.00 0.0 0.00 3.53 R
7535 9232 0.251386 AGCGACTGGACTCAAGGAGA 60.251 55.000 0.00 0.0 33.32 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.128349 ACCGATGTTTATGTGATACCGC 58.872 45.455 0.00 0.00 0.00 5.68
23 24 2.154963 CCGATGTTTATGTGATACCGCG 59.845 50.000 0.00 0.00 0.00 6.46
24 25 3.047093 CGATGTTTATGTGATACCGCGA 58.953 45.455 8.23 0.00 0.00 5.87
25 26 3.673338 CGATGTTTATGTGATACCGCGAT 59.327 43.478 8.23 0.00 0.00 4.58
26 27 4.854839 CGATGTTTATGTGATACCGCGATA 59.145 41.667 8.23 0.00 0.00 2.92
27 28 5.219969 CGATGTTTATGTGATACCGCGATAC 60.220 44.000 8.23 0.00 0.00 2.24
28 29 3.976306 TGTTTATGTGATACCGCGATACG 59.024 43.478 8.23 0.00 43.15 3.06
37 38 4.647615 CGCGATACGGGCTCCTGG 62.648 72.222 0.00 0.00 38.44 4.45
38 39 4.301027 GCGATACGGGCTCCTGGG 62.301 72.222 0.00 0.00 0.00 4.45
39 40 2.520982 CGATACGGGCTCCTGGGA 60.521 66.667 0.00 0.00 0.00 4.37
40 41 2.565645 CGATACGGGCTCCTGGGAG 61.566 68.421 11.97 11.97 44.56 4.30
48 49 3.745546 CTCCTGGGAGCCATTGGA 58.254 61.111 6.95 0.00 35.31 3.53
49 50 2.238530 CTCCTGGGAGCCATTGGAT 58.761 57.895 6.95 0.00 35.31 3.41
50 51 0.110104 CTCCTGGGAGCCATTGGATC 59.890 60.000 12.62 12.62 37.39 3.36
51 52 0.327867 TCCTGGGAGCCATTGGATCT 60.328 55.000 19.72 1.62 38.31 2.75
52 53 0.110104 CCTGGGAGCCATTGGATCTC 59.890 60.000 19.72 17.06 39.36 2.75
54 55 0.841961 TGGGAGCCATTGGATCTCAG 59.158 55.000 19.47 0.00 44.25 3.35
55 56 0.110104 GGGAGCCATTGGATCTCAGG 59.890 60.000 19.72 0.00 38.66 3.86
56 57 0.842635 GGAGCCATTGGATCTCAGGT 59.157 55.000 19.72 0.00 38.31 4.00
57 58 1.202746 GGAGCCATTGGATCTCAGGTC 60.203 57.143 19.72 0.00 38.31 3.85
58 59 0.842635 AGCCATTGGATCTCAGGTCC 59.157 55.000 6.95 0.00 36.26 4.46
59 60 0.533755 GCCATTGGATCTCAGGTCCG 60.534 60.000 6.95 0.00 38.64 4.79
60 61 0.833287 CCATTGGATCTCAGGTCCGT 59.167 55.000 0.00 0.00 38.64 4.69
61 62 1.210478 CCATTGGATCTCAGGTCCGTT 59.790 52.381 0.00 0.00 38.64 4.44
62 63 2.283298 CATTGGATCTCAGGTCCGTTG 58.717 52.381 0.00 0.00 38.64 4.10
63 64 0.613260 TTGGATCTCAGGTCCGTTGG 59.387 55.000 0.00 0.00 38.64 3.77
64 65 1.153349 GGATCTCAGGTCCGTTGGC 60.153 63.158 0.00 0.00 0.00 4.52
65 66 1.617947 GGATCTCAGGTCCGTTGGCT 61.618 60.000 0.00 0.00 0.00 4.75
66 67 0.250513 GATCTCAGGTCCGTTGGCTT 59.749 55.000 0.00 0.00 0.00 4.35
67 68 0.693049 ATCTCAGGTCCGTTGGCTTT 59.307 50.000 0.00 0.00 0.00 3.51
68 69 0.034896 TCTCAGGTCCGTTGGCTTTC 59.965 55.000 0.00 0.00 0.00 2.62
69 70 1.291877 CTCAGGTCCGTTGGCTTTCG 61.292 60.000 0.00 0.00 0.00 3.46
70 71 2.032071 AGGTCCGTTGGCTTTCGG 59.968 61.111 8.69 8.69 46.93 4.30
71 72 3.053896 GGTCCGTTGGCTTTCGGG 61.054 66.667 13.33 0.00 45.79 5.14
72 73 2.031465 GTCCGTTGGCTTTCGGGA 59.969 61.111 13.33 0.00 45.79 5.14
73 74 2.033194 GTCCGTTGGCTTTCGGGAG 61.033 63.158 13.33 0.00 45.79 4.30
74 75 3.431725 CCGTTGGCTTTCGGGAGC 61.432 66.667 7.46 2.79 42.61 4.70
75 76 2.358737 CGTTGGCTTTCGGGAGCT 60.359 61.111 10.09 0.00 42.32 4.09
76 77 2.391389 CGTTGGCTTTCGGGAGCTC 61.391 63.158 4.71 4.71 42.32 4.09
77 78 1.003233 GTTGGCTTTCGGGAGCTCT 60.003 57.895 14.64 0.00 42.32 4.09
78 79 0.606673 GTTGGCTTTCGGGAGCTCTT 60.607 55.000 14.64 0.00 42.32 2.85
79 80 0.606401 TTGGCTTTCGGGAGCTCTTG 60.606 55.000 14.64 6.54 42.32 3.02
80 81 1.296715 GGCTTTCGGGAGCTCTTGA 59.703 57.895 14.64 8.99 42.32 3.02
81 82 0.321653 GGCTTTCGGGAGCTCTTGAA 60.322 55.000 14.64 14.55 42.32 2.69
82 83 0.799393 GCTTTCGGGAGCTCTTGAAC 59.201 55.000 14.64 3.91 39.57 3.18
83 84 1.878102 GCTTTCGGGAGCTCTTGAACA 60.878 52.381 14.64 8.00 39.57 3.18
84 85 2.704572 CTTTCGGGAGCTCTTGAACAT 58.295 47.619 14.64 0.00 0.00 2.71
85 86 2.859165 TTCGGGAGCTCTTGAACATT 57.141 45.000 14.64 0.00 0.00 2.71
86 87 2.859165 TCGGGAGCTCTTGAACATTT 57.141 45.000 14.64 0.00 0.00 2.32
87 88 3.140325 TCGGGAGCTCTTGAACATTTT 57.860 42.857 14.64 0.00 0.00 1.82
88 89 2.813754 TCGGGAGCTCTTGAACATTTTG 59.186 45.455 14.64 0.00 0.00 2.44
89 90 2.669391 CGGGAGCTCTTGAACATTTTGC 60.669 50.000 14.64 0.00 0.00 3.68
90 91 2.297033 GGGAGCTCTTGAACATTTTGCA 59.703 45.455 14.64 0.00 0.00 4.08
91 92 3.243839 GGGAGCTCTTGAACATTTTGCAA 60.244 43.478 14.64 0.00 0.00 4.08
92 93 4.370917 GGAGCTCTTGAACATTTTGCAAA 58.629 39.130 14.64 8.05 0.00 3.68
93 94 4.810491 GGAGCTCTTGAACATTTTGCAAAA 59.190 37.500 25.76 25.76 0.00 2.44
94 95 5.050567 GGAGCTCTTGAACATTTTGCAAAAG 60.051 40.000 27.08 20.55 0.00 2.27
95 96 4.271776 AGCTCTTGAACATTTTGCAAAAGC 59.728 37.500 27.08 20.89 36.21 3.51
96 97 4.553351 GCTCTTGAACATTTTGCAAAAGCC 60.553 41.667 27.08 16.44 31.28 4.35
97 98 4.511527 TCTTGAACATTTTGCAAAAGCCA 58.488 34.783 27.08 18.41 0.00 4.75
98 99 5.124645 TCTTGAACATTTTGCAAAAGCCAT 58.875 33.333 27.08 14.57 0.00 4.40
99 100 5.236911 TCTTGAACATTTTGCAAAAGCCATC 59.763 36.000 27.08 20.98 0.00 3.51
100 101 4.706035 TGAACATTTTGCAAAAGCCATCT 58.294 34.783 27.08 8.99 0.00 2.90
101 102 5.851720 TGAACATTTTGCAAAAGCCATCTA 58.148 33.333 27.08 9.63 0.00 1.98
102 103 6.286758 TGAACATTTTGCAAAAGCCATCTAA 58.713 32.000 27.08 3.89 0.00 2.10
103 104 6.424509 TGAACATTTTGCAAAAGCCATCTAAG 59.575 34.615 27.08 11.77 0.00 2.18
104 105 6.100404 ACATTTTGCAAAAGCCATCTAAGA 57.900 33.333 27.08 2.63 0.00 2.10
105 106 5.928264 ACATTTTGCAAAAGCCATCTAAGAC 59.072 36.000 27.08 0.00 0.00 3.01
106 107 5.789643 TTTTGCAAAAGCCATCTAAGACT 57.210 34.783 20.46 0.00 0.00 3.24
107 108 5.376854 TTTGCAAAAGCCATCTAAGACTC 57.623 39.130 10.02 0.00 0.00 3.36
108 109 3.347216 TGCAAAAGCCATCTAAGACTCC 58.653 45.455 0.00 0.00 0.00 3.85
109 110 3.009473 TGCAAAAGCCATCTAAGACTCCT 59.991 43.478 0.00 0.00 0.00 3.69
110 111 4.225042 TGCAAAAGCCATCTAAGACTCCTA 59.775 41.667 0.00 0.00 0.00 2.94
111 112 5.186198 GCAAAAGCCATCTAAGACTCCTAA 58.814 41.667 0.00 0.00 0.00 2.69
112 113 5.648092 GCAAAAGCCATCTAAGACTCCTAAA 59.352 40.000 0.00 0.00 0.00 1.85
113 114 6.151144 GCAAAAGCCATCTAAGACTCCTAAAA 59.849 38.462 0.00 0.00 0.00 1.52
114 115 7.148000 GCAAAAGCCATCTAAGACTCCTAAAAT 60.148 37.037 0.00 0.00 0.00 1.82
115 116 8.743714 CAAAAGCCATCTAAGACTCCTAAAATT 58.256 33.333 0.00 0.00 0.00 1.82
116 117 9.975218 AAAAGCCATCTAAGACTCCTAAAATTA 57.025 29.630 0.00 0.00 0.00 1.40
117 118 8.966069 AAGCCATCTAAGACTCCTAAAATTAC 57.034 34.615 0.00 0.00 0.00 1.89
118 119 7.210873 AGCCATCTAAGACTCCTAAAATTACG 58.789 38.462 0.00 0.00 0.00 3.18
119 120 6.073711 GCCATCTAAGACTCCTAAAATTACGC 60.074 42.308 0.00 0.00 0.00 4.42
120 121 6.144080 CCATCTAAGACTCCTAAAATTACGCG 59.856 42.308 3.53 3.53 0.00 6.01
121 122 5.039333 TCTAAGACTCCTAAAATTACGCGC 58.961 41.667 5.73 0.00 0.00 6.86
122 123 3.241067 AGACTCCTAAAATTACGCGCA 57.759 42.857 5.73 0.00 0.00 6.09
123 124 3.187700 AGACTCCTAAAATTACGCGCAG 58.812 45.455 5.73 2.42 0.00 5.18
124 125 2.277084 ACTCCTAAAATTACGCGCAGG 58.723 47.619 5.73 3.66 0.00 4.85
125 126 2.277084 CTCCTAAAATTACGCGCAGGT 58.723 47.619 5.73 0.00 0.00 4.00
126 127 3.119029 ACTCCTAAAATTACGCGCAGGTA 60.119 43.478 5.73 0.00 0.00 3.08
127 128 3.189285 TCCTAAAATTACGCGCAGGTAC 58.811 45.455 5.73 0.00 0.00 3.34
128 129 2.931325 CCTAAAATTACGCGCAGGTACA 59.069 45.455 5.73 0.00 0.00 2.90
129 130 3.371591 CCTAAAATTACGCGCAGGTACAA 59.628 43.478 5.73 0.00 0.00 2.41
130 131 3.465122 AAAATTACGCGCAGGTACAAG 57.535 42.857 5.73 0.00 0.00 3.16
131 132 2.373540 AATTACGCGCAGGTACAAGA 57.626 45.000 5.73 0.00 0.00 3.02
132 133 1.922570 ATTACGCGCAGGTACAAGAG 58.077 50.000 5.73 0.00 0.00 2.85
133 134 0.734942 TTACGCGCAGGTACAAGAGC 60.735 55.000 5.73 0.00 0.00 4.09
134 135 1.592400 TACGCGCAGGTACAAGAGCT 61.592 55.000 5.73 0.00 35.84 4.09
135 136 2.161486 CGCGCAGGTACAAGAGCTC 61.161 63.158 8.75 5.27 31.94 4.09
136 137 1.811679 GCGCAGGTACAAGAGCTCC 60.812 63.158 10.93 0.00 31.94 4.70
137 138 1.893786 CGCAGGTACAAGAGCTCCT 59.106 57.895 10.93 0.00 31.94 3.69
138 139 0.179124 CGCAGGTACAAGAGCTCCTC 60.179 60.000 10.93 0.00 31.94 3.71
139 140 0.898320 GCAGGTACAAGAGCTCCTCA 59.102 55.000 10.93 0.00 31.94 3.86
140 141 1.276421 GCAGGTACAAGAGCTCCTCAA 59.724 52.381 10.93 0.00 31.94 3.02
141 142 2.289694 GCAGGTACAAGAGCTCCTCAAA 60.290 50.000 10.93 0.00 31.94 2.69
142 143 3.620966 GCAGGTACAAGAGCTCCTCAAAT 60.621 47.826 10.93 0.00 31.94 2.32
143 144 3.937706 CAGGTACAAGAGCTCCTCAAATG 59.062 47.826 10.93 3.07 31.94 2.32
144 145 2.680339 GGTACAAGAGCTCCTCAAATGC 59.320 50.000 10.93 0.00 32.06 3.56
145 146 1.831580 ACAAGAGCTCCTCAAATGCC 58.168 50.000 10.93 0.00 32.06 4.40
146 147 1.074405 ACAAGAGCTCCTCAAATGCCA 59.926 47.619 10.93 0.00 32.06 4.92
147 148 2.291411 ACAAGAGCTCCTCAAATGCCAT 60.291 45.455 10.93 0.00 32.06 4.40
148 149 2.345124 AGAGCTCCTCAAATGCCATC 57.655 50.000 10.93 0.00 32.06 3.51
149 150 1.562942 AGAGCTCCTCAAATGCCATCA 59.437 47.619 10.93 0.00 32.06 3.07
150 151 1.948145 GAGCTCCTCAAATGCCATCAG 59.052 52.381 0.87 0.00 0.00 2.90
151 152 1.030457 GCTCCTCAAATGCCATCAGG 58.970 55.000 0.00 0.00 38.23 3.86
152 153 1.684248 GCTCCTCAAATGCCATCAGGT 60.684 52.381 0.00 0.00 37.19 4.00
153 154 2.295885 CTCCTCAAATGCCATCAGGTC 58.704 52.381 0.00 0.00 37.19 3.85
154 155 1.918262 TCCTCAAATGCCATCAGGTCT 59.082 47.619 0.00 0.00 37.19 3.85
155 156 3.114606 TCCTCAAATGCCATCAGGTCTA 58.885 45.455 0.00 0.00 37.19 2.59
156 157 3.135348 TCCTCAAATGCCATCAGGTCTAG 59.865 47.826 0.00 0.00 37.19 2.43
157 158 3.135348 CCTCAAATGCCATCAGGTCTAGA 59.865 47.826 0.00 0.00 37.19 2.43
158 159 4.202440 CCTCAAATGCCATCAGGTCTAGAT 60.202 45.833 0.00 0.00 37.19 1.98
159 160 4.711399 TCAAATGCCATCAGGTCTAGATG 58.289 43.478 0.00 0.00 41.91 2.90
160 161 4.164796 TCAAATGCCATCAGGTCTAGATGT 59.835 41.667 0.00 0.00 40.93 3.06
161 162 4.348863 AATGCCATCAGGTCTAGATGTC 57.651 45.455 0.00 0.00 40.93 3.06
162 163 3.037851 TGCCATCAGGTCTAGATGTCT 57.962 47.619 0.00 0.00 40.93 3.41
163 164 2.697229 TGCCATCAGGTCTAGATGTCTG 59.303 50.000 0.00 5.14 40.93 3.51
164 165 2.697751 GCCATCAGGTCTAGATGTCTGT 59.302 50.000 15.53 5.78 40.93 3.41
165 166 3.891977 GCCATCAGGTCTAGATGTCTGTA 59.108 47.826 15.53 7.44 40.93 2.74
166 167 4.526262 GCCATCAGGTCTAGATGTCTGTAT 59.474 45.833 15.53 8.76 40.93 2.29
167 168 5.336372 GCCATCAGGTCTAGATGTCTGTATC 60.336 48.000 15.53 0.00 40.93 2.24
168 169 5.772169 CCATCAGGTCTAGATGTCTGTATCA 59.228 44.000 15.53 3.13 40.93 2.15
169 170 6.436847 CCATCAGGTCTAGATGTCTGTATCAT 59.563 42.308 15.53 4.72 40.93 2.45
170 171 6.890979 TCAGGTCTAGATGTCTGTATCATG 57.109 41.667 15.53 0.00 0.00 3.07
171 172 5.772169 TCAGGTCTAGATGTCTGTATCATGG 59.228 44.000 15.53 0.00 0.00 3.66
172 173 5.538053 CAGGTCTAGATGTCTGTATCATGGT 59.462 44.000 0.00 0.00 0.00 3.55
173 174 6.717084 CAGGTCTAGATGTCTGTATCATGGTA 59.283 42.308 0.00 0.00 0.00 3.25
174 175 6.717540 AGGTCTAGATGTCTGTATCATGGTAC 59.282 42.308 9.31 9.31 0.00 3.34
175 176 6.071840 GGTCTAGATGTCTGTATCATGGTACC 60.072 46.154 13.58 4.43 0.00 3.34
176 177 6.490381 GTCTAGATGTCTGTATCATGGTACCA 59.510 42.308 18.99 18.99 0.00 3.25
177 178 5.537300 AGATGTCTGTATCATGGTACCAC 57.463 43.478 19.09 10.38 0.00 4.16
178 179 4.345257 AGATGTCTGTATCATGGTACCACC 59.655 45.833 19.09 3.61 39.22 4.61
179 180 3.719871 TGTCTGTATCATGGTACCACCT 58.280 45.455 19.09 7.35 39.58 4.00
180 181 3.450817 TGTCTGTATCATGGTACCACCTG 59.549 47.826 19.09 13.26 39.58 4.00
181 182 3.704566 GTCTGTATCATGGTACCACCTGA 59.295 47.826 19.09 18.61 39.58 3.86
182 183 4.161565 GTCTGTATCATGGTACCACCTGAA 59.838 45.833 19.09 6.52 39.58 3.02
183 184 4.780554 TCTGTATCATGGTACCACCTGAAA 59.219 41.667 19.09 7.59 39.58 2.69
184 185 4.839121 TGTATCATGGTACCACCTGAAAC 58.161 43.478 19.09 11.38 39.58 2.78
185 186 4.534500 TGTATCATGGTACCACCTGAAACT 59.466 41.667 19.09 6.06 39.58 2.66
186 187 4.657814 ATCATGGTACCACCTGAAACTT 57.342 40.909 19.09 0.00 39.58 2.66
187 188 4.447138 TCATGGTACCACCTGAAACTTT 57.553 40.909 19.09 0.00 39.58 2.66
188 189 4.394729 TCATGGTACCACCTGAAACTTTC 58.605 43.478 19.09 0.00 39.58 2.62
189 190 3.217681 TGGTACCACCTGAAACTTTCC 57.782 47.619 11.60 0.00 39.58 3.13
190 191 2.158579 TGGTACCACCTGAAACTTTCCC 60.159 50.000 11.60 0.00 39.58 3.97
191 192 2.158579 GGTACCACCTGAAACTTTCCCA 60.159 50.000 7.15 0.00 34.73 4.37
192 193 2.067365 ACCACCTGAAACTTTCCCAC 57.933 50.000 0.00 0.00 0.00 4.61
193 194 1.328279 CCACCTGAAACTTTCCCACC 58.672 55.000 0.00 0.00 0.00 4.61
194 195 1.328279 CACCTGAAACTTTCCCACCC 58.672 55.000 0.00 0.00 0.00 4.61
195 196 0.187606 ACCTGAAACTTTCCCACCCC 59.812 55.000 0.00 0.00 0.00 4.95
196 197 0.187361 CCTGAAACTTTCCCACCCCA 59.813 55.000 0.00 0.00 0.00 4.96
197 198 1.412361 CCTGAAACTTTCCCACCCCAA 60.412 52.381 0.00 0.00 0.00 4.12
198 199 1.686587 CTGAAACTTTCCCACCCCAAC 59.313 52.381 0.00 0.00 0.00 3.77
199 200 0.671796 GAAACTTTCCCACCCCAACG 59.328 55.000 0.00 0.00 0.00 4.10
200 201 0.757561 AAACTTTCCCACCCCAACGG 60.758 55.000 0.00 0.00 37.81 4.44
202 203 1.602605 CTTTCCCACCCCAACGGTC 60.603 63.158 0.00 0.00 43.58 4.79
203 204 2.064242 CTTTCCCACCCCAACGGTCT 62.064 60.000 0.00 0.00 43.58 3.85
204 205 0.767446 TTTCCCACCCCAACGGTCTA 60.767 55.000 0.00 0.00 43.58 2.59
205 206 0.548197 TTCCCACCCCAACGGTCTAT 60.548 55.000 0.00 0.00 43.58 1.98
206 207 0.979187 TCCCACCCCAACGGTCTATC 60.979 60.000 0.00 0.00 43.58 2.08
207 208 1.268992 CCCACCCCAACGGTCTATCA 61.269 60.000 0.00 0.00 43.58 2.15
208 209 0.107848 CCACCCCAACGGTCTATCAC 60.108 60.000 0.00 0.00 43.58 3.06
209 210 0.459585 CACCCCAACGGTCTATCACG 60.460 60.000 0.00 0.00 43.58 4.35
210 211 1.143183 CCCCAACGGTCTATCACGG 59.857 63.158 0.00 0.00 0.00 4.94
211 212 1.520787 CCCAACGGTCTATCACGGC 60.521 63.158 0.00 0.00 0.00 5.68
212 213 1.216977 CCAACGGTCTATCACGGCA 59.783 57.895 0.00 0.00 0.00 5.69
213 214 0.179084 CCAACGGTCTATCACGGCAT 60.179 55.000 0.00 0.00 0.00 4.40
214 215 1.209128 CAACGGTCTATCACGGCATC 58.791 55.000 0.00 0.00 0.00 3.91
215 216 0.821517 AACGGTCTATCACGGCATCA 59.178 50.000 0.00 0.00 0.00 3.07
216 217 0.102481 ACGGTCTATCACGGCATCAC 59.898 55.000 0.00 0.00 0.00 3.06
217 218 0.597637 CGGTCTATCACGGCATCACC 60.598 60.000 0.00 0.00 0.00 4.02
218 219 0.753262 GGTCTATCACGGCATCACCT 59.247 55.000 0.00 0.00 35.61 4.00
219 220 1.961394 GGTCTATCACGGCATCACCTA 59.039 52.381 0.00 0.00 35.61 3.08
220 221 2.364324 GGTCTATCACGGCATCACCTAA 59.636 50.000 0.00 0.00 35.61 2.69
221 222 3.553096 GGTCTATCACGGCATCACCTAAG 60.553 52.174 0.00 0.00 35.61 2.18
222 223 3.318275 GTCTATCACGGCATCACCTAAGA 59.682 47.826 0.00 0.00 35.61 2.10
223 224 3.958147 TCTATCACGGCATCACCTAAGAA 59.042 43.478 0.00 0.00 35.61 2.52
224 225 3.845781 ATCACGGCATCACCTAAGAAT 57.154 42.857 0.00 0.00 35.61 2.40
225 226 3.627395 TCACGGCATCACCTAAGAATT 57.373 42.857 0.00 0.00 35.61 2.17
226 227 3.950397 TCACGGCATCACCTAAGAATTT 58.050 40.909 0.00 0.00 35.61 1.82
227 228 3.938963 TCACGGCATCACCTAAGAATTTC 59.061 43.478 0.00 0.00 35.61 2.17
228 229 3.065371 CACGGCATCACCTAAGAATTTCC 59.935 47.826 0.00 0.00 35.61 3.13
229 230 3.278574 CGGCATCACCTAAGAATTTCCA 58.721 45.455 0.00 0.00 35.61 3.53
230 231 3.313526 CGGCATCACCTAAGAATTTCCAG 59.686 47.826 0.00 0.00 35.61 3.86
231 232 3.633986 GGCATCACCTAAGAATTTCCAGG 59.366 47.826 11.38 11.38 34.51 4.45
232 233 4.273318 GCATCACCTAAGAATTTCCAGGT 58.727 43.478 12.41 12.41 42.17 4.00
236 237 4.302559 ACCTAAGAATTTCCAGGTGGTC 57.697 45.455 15.91 0.00 39.93 4.02
237 238 3.270877 CCTAAGAATTTCCAGGTGGTCG 58.729 50.000 6.52 0.00 36.34 4.79
238 239 3.055385 CCTAAGAATTTCCAGGTGGTCGA 60.055 47.826 6.52 0.00 36.34 4.20
583 584 4.075793 AGCCGCCTCCCTCACCTA 62.076 66.667 0.00 0.00 0.00 3.08
584 585 2.844839 GCCGCCTCCCTCACCTAT 60.845 66.667 0.00 0.00 0.00 2.57
585 586 2.444256 GCCGCCTCCCTCACCTATT 61.444 63.158 0.00 0.00 0.00 1.73
586 587 1.447643 CCGCCTCCCTCACCTATTG 59.552 63.158 0.00 0.00 0.00 1.90
587 588 1.048724 CCGCCTCCCTCACCTATTGA 61.049 60.000 0.00 0.00 0.00 2.57
588 589 0.105039 CGCCTCCCTCACCTATTGAC 59.895 60.000 0.00 0.00 0.00 3.18
589 590 1.501582 GCCTCCCTCACCTATTGACT 58.498 55.000 0.00 0.00 0.00 3.41
590 591 2.679082 GCCTCCCTCACCTATTGACTA 58.321 52.381 0.00 0.00 0.00 2.59
591 592 3.039011 GCCTCCCTCACCTATTGACTAA 58.961 50.000 0.00 0.00 0.00 2.24
592 593 3.070302 GCCTCCCTCACCTATTGACTAAG 59.930 52.174 0.00 0.00 0.00 2.18
593 594 3.070302 CCTCCCTCACCTATTGACTAAGC 59.930 52.174 0.00 0.00 0.00 3.09
594 595 3.706594 CTCCCTCACCTATTGACTAAGCA 59.293 47.826 0.00 0.00 0.00 3.91
595 596 4.101114 TCCCTCACCTATTGACTAAGCAA 58.899 43.478 0.00 0.00 0.00 3.91
596 597 4.721776 TCCCTCACCTATTGACTAAGCAAT 59.278 41.667 0.00 0.00 41.15 3.56
597 598 5.059833 CCCTCACCTATTGACTAAGCAATC 58.940 45.833 0.00 0.00 39.15 2.67
598 599 5.163258 CCCTCACCTATTGACTAAGCAATCT 60.163 44.000 0.00 0.00 39.15 2.40
599 600 5.757320 CCTCACCTATTGACTAAGCAATCTG 59.243 44.000 0.00 0.00 39.15 2.90
600 601 6.407412 CCTCACCTATTGACTAAGCAATCTGA 60.407 42.308 0.00 0.00 39.15 3.27
601 602 6.341316 TCACCTATTGACTAAGCAATCTGAC 58.659 40.000 0.00 0.00 39.15 3.51
602 603 6.070824 TCACCTATTGACTAAGCAATCTGACA 60.071 38.462 0.00 0.00 39.15 3.58
603 604 6.595326 CACCTATTGACTAAGCAATCTGACAA 59.405 38.462 0.00 0.00 39.15 3.18
604 605 6.820656 ACCTATTGACTAAGCAATCTGACAAG 59.179 38.462 0.00 0.00 39.15 3.16
605 606 6.820656 CCTATTGACTAAGCAATCTGACAAGT 59.179 38.462 0.00 0.00 39.15 3.16
606 607 7.335422 CCTATTGACTAAGCAATCTGACAAGTT 59.665 37.037 0.00 0.00 39.15 2.66
607 608 9.371136 CTATTGACTAAGCAATCTGACAAGTTA 57.629 33.333 0.00 0.00 39.15 2.24
608 609 7.658179 TTGACTAAGCAATCTGACAAGTTAG 57.342 36.000 0.00 0.00 0.00 2.34
609 610 5.639506 TGACTAAGCAATCTGACAAGTTAGC 59.360 40.000 0.00 0.00 0.00 3.09
610 611 4.938226 ACTAAGCAATCTGACAAGTTAGCC 59.062 41.667 0.00 0.00 0.00 3.93
611 612 2.716217 AGCAATCTGACAAGTTAGCCC 58.284 47.619 0.00 0.00 0.00 5.19
612 613 2.040278 AGCAATCTGACAAGTTAGCCCA 59.960 45.455 0.00 0.00 0.00 5.36
613 614 2.162408 GCAATCTGACAAGTTAGCCCAC 59.838 50.000 0.00 0.00 0.00 4.61
614 615 3.679389 CAATCTGACAAGTTAGCCCACT 58.321 45.455 0.00 0.00 0.00 4.00
615 616 4.074970 CAATCTGACAAGTTAGCCCACTT 58.925 43.478 0.00 0.00 37.49 3.16
616 617 5.245531 CAATCTGACAAGTTAGCCCACTTA 58.754 41.667 0.00 0.00 35.10 2.24
617 618 4.537135 TCTGACAAGTTAGCCCACTTAG 57.463 45.455 0.00 0.00 35.10 2.18
618 619 3.901844 TCTGACAAGTTAGCCCACTTAGT 59.098 43.478 0.00 0.59 35.10 2.24
619 620 5.081728 TCTGACAAGTTAGCCCACTTAGTA 58.918 41.667 0.00 0.00 35.10 1.82
620 621 5.541101 TCTGACAAGTTAGCCCACTTAGTAA 59.459 40.000 0.00 0.00 35.10 2.24
621 622 6.042322 TCTGACAAGTTAGCCCACTTAGTAAA 59.958 38.462 0.00 0.00 35.10 2.01
622 623 5.993441 TGACAAGTTAGCCCACTTAGTAAAC 59.007 40.000 0.00 0.00 35.10 2.01
623 624 5.311265 ACAAGTTAGCCCACTTAGTAAACC 58.689 41.667 0.00 0.00 35.10 3.27
624 625 4.564782 AGTTAGCCCACTTAGTAAACCC 57.435 45.455 0.00 0.00 0.00 4.11
625 626 4.173594 AGTTAGCCCACTTAGTAAACCCT 58.826 43.478 0.00 0.00 0.00 4.34
626 627 4.019591 AGTTAGCCCACTTAGTAAACCCTG 60.020 45.833 0.00 0.00 0.00 4.45
627 628 2.345560 AGCCCACTTAGTAAACCCTGT 58.654 47.619 0.00 0.00 0.00 4.00
628 629 3.523792 AGCCCACTTAGTAAACCCTGTA 58.476 45.455 0.00 0.00 0.00 2.74
629 630 3.911894 AGCCCACTTAGTAAACCCTGTAA 59.088 43.478 0.00 0.00 0.00 2.41
630 631 4.351704 AGCCCACTTAGTAAACCCTGTAAA 59.648 41.667 0.00 0.00 0.00 2.01
631 632 5.014860 AGCCCACTTAGTAAACCCTGTAAAT 59.985 40.000 0.00 0.00 0.00 1.40
632 633 5.713389 GCCCACTTAGTAAACCCTGTAAATT 59.287 40.000 0.00 0.00 0.00 1.82
633 634 6.885918 GCCCACTTAGTAAACCCTGTAAATTA 59.114 38.462 0.00 0.00 0.00 1.40
634 635 7.558807 GCCCACTTAGTAAACCCTGTAAATTAT 59.441 37.037 0.00 0.00 0.00 1.28
635 636 9.470399 CCCACTTAGTAAACCCTGTAAATTATT 57.530 33.333 0.00 0.00 0.00 1.40
642 643 9.948964 AGTAAACCCTGTAAATTATTCTTACGT 57.051 29.630 0.00 0.00 32.87 3.57
643 644 9.977762 GTAAACCCTGTAAATTATTCTTACGTG 57.022 33.333 0.00 0.00 32.87 4.49
644 645 8.625786 AAACCCTGTAAATTATTCTTACGTGT 57.374 30.769 0.00 0.00 32.87 4.49
645 646 9.723601 AAACCCTGTAAATTATTCTTACGTGTA 57.276 29.630 0.00 0.00 32.87 2.90
646 647 8.937634 ACCCTGTAAATTATTCTTACGTGTAG 57.062 34.615 0.00 0.00 32.87 2.74
647 648 7.493645 ACCCTGTAAATTATTCTTACGTGTAGC 59.506 37.037 0.00 0.00 32.87 3.58
648 649 7.493320 CCCTGTAAATTATTCTTACGTGTAGCA 59.507 37.037 0.00 0.00 32.87 3.49
649 650 9.042008 CCTGTAAATTATTCTTACGTGTAGCAT 57.958 33.333 0.00 0.00 32.87 3.79
655 656 9.811995 AATTATTCTTACGTGTAGCATTACTGA 57.188 29.630 0.00 0.00 0.00 3.41
656 657 8.851960 TTATTCTTACGTGTAGCATTACTGAG 57.148 34.615 0.00 0.00 0.00 3.35
657 658 5.244785 TCTTACGTGTAGCATTACTGAGG 57.755 43.478 0.00 0.00 0.00 3.86
658 659 2.295253 ACGTGTAGCATTACTGAGGC 57.705 50.000 0.00 0.00 0.00 4.70
659 660 1.200483 CGTGTAGCATTACTGAGGCG 58.800 55.000 0.00 0.00 0.00 5.52
660 661 1.202256 CGTGTAGCATTACTGAGGCGA 60.202 52.381 0.00 0.00 0.00 5.54
661 662 2.194271 GTGTAGCATTACTGAGGCGAC 58.806 52.381 0.00 0.00 34.37 5.19
662 663 1.136305 TGTAGCATTACTGAGGCGACC 59.864 52.381 0.00 0.00 33.07 4.79
663 664 0.750850 TAGCATTACTGAGGCGACCC 59.249 55.000 0.00 0.00 0.00 4.46
664 665 0.978146 AGCATTACTGAGGCGACCCT 60.978 55.000 0.00 0.00 46.74 4.34
665 666 0.107654 GCATTACTGAGGCGACCCTT 60.108 55.000 0.00 0.00 43.12 3.95
666 667 1.656652 CATTACTGAGGCGACCCTTG 58.343 55.000 0.00 0.00 43.12 3.61
667 668 1.066143 CATTACTGAGGCGACCCTTGT 60.066 52.381 0.00 0.00 43.12 3.16
668 669 0.320374 TTACTGAGGCGACCCTTGTG 59.680 55.000 0.00 0.00 43.12 3.33
669 670 0.830444 TACTGAGGCGACCCTTGTGT 60.830 55.000 0.00 0.00 43.12 3.72
670 671 1.071471 CTGAGGCGACCCTTGTGTT 59.929 57.895 0.00 0.00 43.12 3.32
671 672 0.535102 CTGAGGCGACCCTTGTGTTT 60.535 55.000 0.00 0.00 43.12 2.83
672 673 0.534203 TGAGGCGACCCTTGTGTTTC 60.534 55.000 0.00 0.00 43.12 2.78
673 674 1.228154 AGGCGACCCTTGTGTTTCC 60.228 57.895 0.00 0.00 38.74 3.13
677 678 0.865769 CGACCCTTGTGTTTCCTTCG 59.134 55.000 0.00 0.00 0.00 3.79
720 721 2.802667 CTTTCCTGCGCGGTCATCG 61.803 63.158 16.49 0.00 42.76 3.84
727 728 2.795973 CGCGGTCATCGTCAGGTA 59.204 61.111 0.00 0.00 41.72 3.08
732 733 1.001268 CGGTCATCGTCAGGTAGATGG 60.001 57.143 5.73 0.00 43.13 3.51
767 770 2.153913 CGTGGTTCGCTCCTTCAAG 58.846 57.895 0.00 0.00 0.00 3.02
783 786 3.371102 TCAAGTCAACCTCTTCAGTCG 57.629 47.619 0.00 0.00 0.00 4.18
805 808 0.167470 CTGAACCGCTTGCACTGATG 59.833 55.000 0.00 0.00 0.00 3.07
808 811 1.001378 GAACCGCTTGCACTGATGTTT 60.001 47.619 0.00 0.00 0.00 2.83
809 812 1.890876 ACCGCTTGCACTGATGTTTA 58.109 45.000 0.00 0.00 0.00 2.01
1229 2256 7.881232 CCAGGTGACTAACTAAAGTTTTCCATA 59.119 37.037 0.00 0.00 40.21 2.74
1310 2458 2.288948 GCAATGAATTCTTGGGTGTGCA 60.289 45.455 7.05 0.00 0.00 4.57
1311 2459 3.319755 CAATGAATTCTTGGGTGTGCAC 58.680 45.455 10.75 10.75 0.00 4.57
1326 2474 1.751927 GCACAGGAGCTTGATGGGG 60.752 63.158 0.00 0.00 0.00 4.96
1763 2914 2.903855 CAGATCCCCCATGCACGC 60.904 66.667 0.00 0.00 0.00 5.34
1859 3010 4.772231 TTCTCGCTACCCCGGCCT 62.772 66.667 0.00 0.00 0.00 5.19
2153 3328 1.293179 CTCACCGAGGCATGTGTGA 59.707 57.895 0.00 0.39 36.40 3.58
2155 3330 1.742880 CACCGAGGCATGTGTGAGG 60.743 63.158 0.00 0.00 0.00 3.86
2156 3331 2.821366 CCGAGGCATGTGTGAGGC 60.821 66.667 0.00 0.00 0.00 4.70
2157 3332 2.046988 CGAGGCATGTGTGAGGCA 60.047 61.111 0.00 0.00 30.95 4.75
2159 3334 1.712018 CGAGGCATGTGTGAGGCATG 61.712 60.000 0.00 0.00 44.62 4.06
2160 3335 0.393402 GAGGCATGTGTGAGGCATGA 60.393 55.000 9.17 0.00 44.60 3.07
2163 3338 0.450583 GCATGTGTGAGGCATGACTG 59.549 55.000 5.31 0.00 44.60 3.51
2165 3340 0.034767 ATGTGTGAGGCATGACTGGG 60.035 55.000 5.31 0.00 0.00 4.45
2167 3342 2.821366 GTGAGGCATGACTGGGCG 60.821 66.667 5.31 0.00 35.71 6.13
2168 3343 3.321648 TGAGGCATGACTGGGCGT 61.322 61.111 5.31 0.00 35.71 5.68
2618 3800 1.960953 GCCGACTTCTACTTCCTCCCT 60.961 57.143 0.00 0.00 0.00 4.20
2713 3895 1.000506 GACCTACCACGTCTCTGCAAA 59.999 52.381 0.00 0.00 0.00 3.68
2866 4048 2.480555 CGGCGACTTCAACATGGC 59.519 61.111 0.00 0.00 0.00 4.40
3117 4299 0.673985 CTTCGACCACTGTCCACTCA 59.326 55.000 0.00 0.00 38.32 3.41
3887 5071 7.410942 GCTTTCGACAAACTCTACACTATGAAG 60.411 40.741 0.00 0.00 0.00 3.02
4123 5307 7.444183 TGATAACTTTCTTCTCGTCCAACAAAT 59.556 33.333 0.00 0.00 0.00 2.32
4195 5380 0.464373 ATCGCCAAGGCATTCGACAT 60.464 50.000 12.19 0.00 42.06 3.06
4267 5452 1.334960 GCGTTGGTGTGAGTGGATTTG 60.335 52.381 0.00 0.00 0.00 2.32
4518 5703 1.918293 ATCTTCTGCCACCCCGACA 60.918 57.895 0.00 0.00 0.00 4.35
4745 5933 2.034221 GCCCTCCTTCCGCTTGTT 59.966 61.111 0.00 0.00 0.00 2.83
4775 5963 1.136147 CATGAAGCTCGCAACCTGC 59.864 57.895 0.00 0.00 40.69 4.85
4790 5978 0.251354 CCTGCAAAGCCTCTCTGCTA 59.749 55.000 0.00 0.00 41.80 3.49
5203 6394 2.803155 GATCACTGGCTCAACGGGCA 62.803 60.000 0.00 0.00 39.84 5.36
5228 6419 1.107538 TCCCCGAGATTGCTCCTACG 61.108 60.000 0.00 0.00 37.91 3.51
5243 6434 1.407437 CCTACGCTTTCTGCCCTCATT 60.407 52.381 0.00 0.00 38.78 2.57
5315 6506 3.304251 TGGATCGCCGACATCCAA 58.696 55.556 6.96 0.00 45.73 3.53
5331 6522 1.767692 CAAGGCACCTTACACCCCT 59.232 57.895 0.61 0.00 34.50 4.79
5707 6909 1.097232 CACGACATCATGGCATGGTT 58.903 50.000 26.15 12.27 0.00 3.67
5728 6930 3.420482 CATTCCCGCCCTTCCCCT 61.420 66.667 0.00 0.00 0.00 4.79
6130 7337 4.091509 GCAACTTGCGTATTCGGGATATAG 59.908 45.833 0.00 0.00 37.56 1.31
6131 7338 5.227908 CAACTTGCGTATTCGGGATATAGT 58.772 41.667 0.00 0.00 37.56 2.12
6132 7339 5.464030 ACTTGCGTATTCGGGATATAGTT 57.536 39.130 0.00 0.00 37.56 2.24
6133 7340 5.467705 ACTTGCGTATTCGGGATATAGTTC 58.532 41.667 0.00 0.00 37.56 3.01
6147 7354 6.171921 GGATATAGTTCTACCTCGAGCACTA 58.828 44.000 6.99 7.84 31.17 2.74
6164 7371 3.830755 GCACTACCCGAATATCTTCCCTA 59.169 47.826 0.00 0.00 0.00 3.53
6184 7391 1.369625 CCGTCTGGTAAGGATTGCAC 58.630 55.000 0.00 0.00 29.70 4.57
6193 7640 5.754782 TGGTAAGGATTGCACATATGACTT 58.245 37.500 10.38 4.74 29.70 3.01
6306 7816 0.535553 GGTCCAAGTACAACGGCCAA 60.536 55.000 2.24 0.00 0.00 4.52
6312 7822 0.181824 AGTACAACGGCCAACACCTT 59.818 50.000 2.24 0.00 0.00 3.50
6375 7885 1.388093 CAGACGCTCAAGAACATCGTG 59.612 52.381 0.00 0.00 33.21 4.35
6420 7930 2.503356 CCACCAGCCTACAATCTTCTCT 59.497 50.000 0.00 0.00 0.00 3.10
6433 7943 9.221933 CTACAATCTTCTCTACCTATGACGTAT 57.778 37.037 0.00 0.00 0.00 3.06
6819 8516 5.064325 GGGTTGTCTGAACCATAAATCGTAC 59.936 44.000 5.96 0.00 42.03 3.67
7007 8704 2.289694 GCATACCTGAAGTGGACAGTGT 60.290 50.000 0.00 0.00 34.04 3.55
7211 8908 5.924356 TCGATCAACCATGTATGTACCAAT 58.076 37.500 0.00 0.00 0.00 3.16
7327 9024 4.213564 AGCTCTCTTTGTCCGATGAAAT 57.786 40.909 0.00 0.00 0.00 2.17
7579 9276 1.302511 ACCACCTCAATCACACCGC 60.303 57.895 0.00 0.00 0.00 5.68
7641 12026 2.161211 GGTTGAGTCAGCTGCTTGATTC 59.839 50.000 9.47 8.32 35.20 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.300803 GCGGTATCACATAAACATCGGTA 58.699 43.478 0.00 0.00 0.00 4.02
2 3 2.154963 CGCGGTATCACATAAACATCGG 59.845 50.000 0.00 0.00 0.00 4.18
4 5 5.219969 CGTATCGCGGTATCACATAAACATC 60.220 44.000 6.13 0.00 36.85 3.06
5 6 4.619760 CGTATCGCGGTATCACATAAACAT 59.380 41.667 6.13 0.00 36.85 2.71
6 7 3.976306 CGTATCGCGGTATCACATAAACA 59.024 43.478 6.13 0.00 36.85 2.83
7 8 4.541778 CGTATCGCGGTATCACATAAAC 57.458 45.455 6.13 0.00 36.85 2.01
20 21 4.647615 CCAGGAGCCCGTATCGCG 62.648 72.222 0.00 0.00 40.95 5.87
21 22 4.301027 CCCAGGAGCCCGTATCGC 62.301 72.222 0.00 0.00 0.00 4.58
22 23 2.520982 TCCCAGGAGCCCGTATCG 60.521 66.667 0.00 0.00 0.00 2.92
23 24 3.460995 CTCCCAGGAGCCCGTATC 58.539 66.667 0.00 0.00 35.31 2.24
31 32 0.110104 GATCCAATGGCTCCCAGGAG 59.890 60.000 9.48 9.48 44.56 3.69
32 33 0.327867 AGATCCAATGGCTCCCAGGA 60.328 55.000 0.00 0.00 36.75 3.86
33 34 0.110104 GAGATCCAATGGCTCCCAGG 59.890 60.000 0.00 0.00 36.75 4.45
34 35 0.841961 TGAGATCCAATGGCTCCCAG 59.158 55.000 0.00 0.00 36.75 4.45
35 36 0.841961 CTGAGATCCAATGGCTCCCA 59.158 55.000 0.00 0.00 38.19 4.37
36 37 0.110104 CCTGAGATCCAATGGCTCCC 59.890 60.000 0.00 0.00 0.00 4.30
37 38 0.842635 ACCTGAGATCCAATGGCTCC 59.157 55.000 0.00 0.00 0.00 4.70
38 39 1.202746 GGACCTGAGATCCAATGGCTC 60.203 57.143 0.00 0.00 36.15 4.70
39 40 0.842635 GGACCTGAGATCCAATGGCT 59.157 55.000 0.00 0.00 36.15 4.75
40 41 0.533755 CGGACCTGAGATCCAATGGC 60.534 60.000 0.00 0.00 35.83 4.40
41 42 0.833287 ACGGACCTGAGATCCAATGG 59.167 55.000 0.00 0.00 35.83 3.16
42 43 2.283298 CAACGGACCTGAGATCCAATG 58.717 52.381 0.00 0.00 35.83 2.82
43 44 1.210478 CCAACGGACCTGAGATCCAAT 59.790 52.381 0.00 0.00 35.83 3.16
44 45 0.613260 CCAACGGACCTGAGATCCAA 59.387 55.000 0.00 0.00 35.83 3.53
45 46 1.899437 GCCAACGGACCTGAGATCCA 61.899 60.000 0.00 0.00 35.83 3.41
46 47 1.153349 GCCAACGGACCTGAGATCC 60.153 63.158 0.00 0.00 0.00 3.36
47 48 0.250513 AAGCCAACGGACCTGAGATC 59.749 55.000 0.00 0.00 0.00 2.75
48 49 0.693049 AAAGCCAACGGACCTGAGAT 59.307 50.000 0.00 0.00 0.00 2.75
49 50 0.034896 GAAAGCCAACGGACCTGAGA 59.965 55.000 0.00 0.00 0.00 3.27
50 51 1.291877 CGAAAGCCAACGGACCTGAG 61.292 60.000 0.00 0.00 0.00 3.35
51 52 1.301401 CGAAAGCCAACGGACCTGA 60.301 57.895 0.00 0.00 0.00 3.86
52 53 3.253955 CGAAAGCCAACGGACCTG 58.746 61.111 0.00 0.00 0.00 4.00
58 59 2.358737 AGCTCCCGAAAGCCAACG 60.359 61.111 5.51 0.00 43.56 4.10
59 60 0.606673 AAGAGCTCCCGAAAGCCAAC 60.607 55.000 10.93 0.00 43.56 3.77
60 61 0.606401 CAAGAGCTCCCGAAAGCCAA 60.606 55.000 10.93 0.00 43.56 4.52
61 62 1.003355 CAAGAGCTCCCGAAAGCCA 60.003 57.895 10.93 0.00 43.56 4.75
62 63 0.321653 TTCAAGAGCTCCCGAAAGCC 60.322 55.000 10.93 0.00 43.56 4.35
63 64 0.799393 GTTCAAGAGCTCCCGAAAGC 59.201 55.000 10.93 0.00 42.82 3.51
64 65 2.169832 TGTTCAAGAGCTCCCGAAAG 57.830 50.000 10.93 0.00 0.00 2.62
65 66 2.859165 ATGTTCAAGAGCTCCCGAAA 57.141 45.000 10.93 5.32 0.00 3.46
66 67 2.859165 AATGTTCAAGAGCTCCCGAA 57.141 45.000 10.93 10.71 0.00 4.30
67 68 2.813754 CAAAATGTTCAAGAGCTCCCGA 59.186 45.455 10.93 4.11 0.00 5.14
68 69 2.669391 GCAAAATGTTCAAGAGCTCCCG 60.669 50.000 10.93 1.25 0.00 5.14
69 70 2.297033 TGCAAAATGTTCAAGAGCTCCC 59.703 45.455 10.93 0.00 0.00 4.30
70 71 3.648339 TGCAAAATGTTCAAGAGCTCC 57.352 42.857 10.93 0.00 0.00 4.70
71 72 5.557703 GCTTTTGCAAAATGTTCAAGAGCTC 60.558 40.000 24.06 5.27 46.58 4.09
72 73 4.271776 GCTTTTGCAAAATGTTCAAGAGCT 59.728 37.500 24.06 0.00 46.58 4.09
73 74 4.521010 GCTTTTGCAAAATGTTCAAGAGC 58.479 39.130 24.06 16.43 46.58 4.09
88 89 3.615155 AGGAGTCTTAGATGGCTTTTGC 58.385 45.455 0.00 0.00 46.64 3.68
89 90 7.687941 TTTTAGGAGTCTTAGATGGCTTTTG 57.312 36.000 0.00 0.00 0.00 2.44
90 91 8.885693 AATTTTAGGAGTCTTAGATGGCTTTT 57.114 30.769 0.00 0.00 0.00 2.27
91 92 9.397280 GTAATTTTAGGAGTCTTAGATGGCTTT 57.603 33.333 0.00 0.00 0.00 3.51
92 93 7.711339 CGTAATTTTAGGAGTCTTAGATGGCTT 59.289 37.037 0.00 0.00 0.00 4.35
93 94 7.210873 CGTAATTTTAGGAGTCTTAGATGGCT 58.789 38.462 0.00 0.00 0.00 4.75
94 95 6.073711 GCGTAATTTTAGGAGTCTTAGATGGC 60.074 42.308 0.00 0.00 0.00 4.40
95 96 6.144080 CGCGTAATTTTAGGAGTCTTAGATGG 59.856 42.308 0.00 0.00 0.00 3.51
96 97 6.345882 GCGCGTAATTTTAGGAGTCTTAGATG 60.346 42.308 8.43 0.00 0.00 2.90
97 98 5.690857 GCGCGTAATTTTAGGAGTCTTAGAT 59.309 40.000 8.43 0.00 0.00 1.98
98 99 5.039333 GCGCGTAATTTTAGGAGTCTTAGA 58.961 41.667 8.43 0.00 0.00 2.10
99 100 4.802039 TGCGCGTAATTTTAGGAGTCTTAG 59.198 41.667 8.43 0.00 0.00 2.18
100 101 4.746729 TGCGCGTAATTTTAGGAGTCTTA 58.253 39.130 8.43 0.00 0.00 2.10
101 102 3.592059 TGCGCGTAATTTTAGGAGTCTT 58.408 40.909 8.43 0.00 0.00 3.01
102 103 3.187700 CTGCGCGTAATTTTAGGAGTCT 58.812 45.455 8.43 0.00 0.00 3.24
103 104 2.284417 CCTGCGCGTAATTTTAGGAGTC 59.716 50.000 8.43 0.00 0.00 3.36
104 105 2.277084 CCTGCGCGTAATTTTAGGAGT 58.723 47.619 8.43 0.00 0.00 3.85
105 106 2.277084 ACCTGCGCGTAATTTTAGGAG 58.723 47.619 8.43 0.00 0.00 3.69
106 107 2.389962 ACCTGCGCGTAATTTTAGGA 57.610 45.000 8.43 0.00 0.00 2.94
107 108 2.931325 TGTACCTGCGCGTAATTTTAGG 59.069 45.455 8.43 3.40 0.00 2.69
108 109 4.327898 TCTTGTACCTGCGCGTAATTTTAG 59.672 41.667 8.43 0.00 0.00 1.85
109 110 4.244066 TCTTGTACCTGCGCGTAATTTTA 58.756 39.130 8.43 0.00 0.00 1.52
110 111 3.068560 TCTTGTACCTGCGCGTAATTTT 58.931 40.909 8.43 0.00 0.00 1.82
111 112 2.671396 CTCTTGTACCTGCGCGTAATTT 59.329 45.455 8.43 0.00 0.00 1.82
112 113 2.268298 CTCTTGTACCTGCGCGTAATT 58.732 47.619 8.43 0.00 0.00 1.40
113 114 1.922570 CTCTTGTACCTGCGCGTAAT 58.077 50.000 8.43 0.00 0.00 1.89
114 115 0.734942 GCTCTTGTACCTGCGCGTAA 60.735 55.000 8.43 0.00 0.00 3.18
115 116 1.153901 GCTCTTGTACCTGCGCGTA 60.154 57.895 8.43 0.71 0.00 4.42
116 117 2.432628 GCTCTTGTACCTGCGCGT 60.433 61.111 8.43 0.00 0.00 6.01
117 118 2.125912 AGCTCTTGTACCTGCGCG 60.126 61.111 0.00 0.00 0.00 6.86
118 119 1.811679 GGAGCTCTTGTACCTGCGC 60.812 63.158 14.64 0.00 0.00 6.09
119 120 0.179124 GAGGAGCTCTTGTACCTGCG 60.179 60.000 14.64 0.00 32.53 5.18
120 121 0.898320 TGAGGAGCTCTTGTACCTGC 59.102 55.000 14.64 0.00 32.53 4.85
121 122 3.685139 TTTGAGGAGCTCTTGTACCTG 57.315 47.619 14.64 0.00 32.53 4.00
122 123 3.620966 GCATTTGAGGAGCTCTTGTACCT 60.621 47.826 14.64 0.48 35.29 3.08
123 124 2.680339 GCATTTGAGGAGCTCTTGTACC 59.320 50.000 14.64 0.00 0.00 3.34
124 125 2.680339 GGCATTTGAGGAGCTCTTGTAC 59.320 50.000 14.64 0.00 0.00 2.90
125 126 2.305635 TGGCATTTGAGGAGCTCTTGTA 59.694 45.455 14.64 0.00 0.00 2.41
126 127 1.074405 TGGCATTTGAGGAGCTCTTGT 59.926 47.619 14.64 0.00 0.00 3.16
127 128 1.830279 TGGCATTTGAGGAGCTCTTG 58.170 50.000 14.64 3.68 0.00 3.02
128 129 2.025605 TGATGGCATTTGAGGAGCTCTT 60.026 45.455 14.64 5.66 0.00 2.85
129 130 1.562942 TGATGGCATTTGAGGAGCTCT 59.437 47.619 14.64 0.00 0.00 4.09
130 131 1.948145 CTGATGGCATTTGAGGAGCTC 59.052 52.381 4.71 4.71 0.00 4.09
131 132 1.409802 CCTGATGGCATTTGAGGAGCT 60.410 52.381 13.26 0.00 0.00 4.09
132 133 1.030457 CCTGATGGCATTTGAGGAGC 58.970 55.000 13.26 0.00 0.00 4.70
133 134 2.092538 AGACCTGATGGCATTTGAGGAG 60.093 50.000 21.44 4.96 36.63 3.69
134 135 1.918262 AGACCTGATGGCATTTGAGGA 59.082 47.619 21.44 0.00 36.63 3.71
135 136 2.431954 AGACCTGATGGCATTTGAGG 57.568 50.000 15.76 15.76 36.63 3.86
136 137 4.412796 TCTAGACCTGATGGCATTTGAG 57.587 45.455 0.00 0.00 36.63 3.02
137 138 4.164796 ACATCTAGACCTGATGGCATTTGA 59.835 41.667 0.00 0.00 43.88 2.69
138 139 4.458397 ACATCTAGACCTGATGGCATTTG 58.542 43.478 0.00 0.00 43.88 2.32
139 140 4.712476 GACATCTAGACCTGATGGCATTT 58.288 43.478 0.00 0.00 46.27 2.32
140 141 4.348863 GACATCTAGACCTGATGGCATT 57.651 45.455 0.00 0.00 46.27 3.56
144 145 5.772169 TGATACAGACATCTAGACCTGATGG 59.228 44.000 19.49 4.40 43.88 3.51
145 146 6.890979 TGATACAGACATCTAGACCTGATG 57.109 41.667 19.49 11.37 44.79 3.07
146 147 6.436847 CCATGATACAGACATCTAGACCTGAT 59.563 42.308 19.49 11.49 0.00 2.90
147 148 5.772169 CCATGATACAGACATCTAGACCTGA 59.228 44.000 19.49 8.44 0.00 3.86
148 149 5.538053 ACCATGATACAGACATCTAGACCTG 59.462 44.000 13.86 13.86 0.00 4.00
149 150 5.710646 ACCATGATACAGACATCTAGACCT 58.289 41.667 0.00 0.00 0.00 3.85
150 151 6.071840 GGTACCATGATACAGACATCTAGACC 60.072 46.154 7.15 0.00 0.00 3.85
151 152 6.490381 TGGTACCATGATACAGACATCTAGAC 59.510 42.308 11.60 0.00 0.00 2.59
152 153 6.490381 GTGGTACCATGATACAGACATCTAGA 59.510 42.308 19.72 0.00 0.00 2.43
153 154 6.294787 GGTGGTACCATGATACAGACATCTAG 60.295 46.154 19.72 0.00 38.42 2.43
154 155 5.538813 GGTGGTACCATGATACAGACATCTA 59.461 44.000 19.72 0.00 38.42 1.98
155 156 4.345257 GGTGGTACCATGATACAGACATCT 59.655 45.833 19.72 0.00 38.42 2.90
156 157 4.345257 AGGTGGTACCATGATACAGACATC 59.655 45.833 19.72 0.00 41.95 3.06
157 158 4.101585 CAGGTGGTACCATGATACAGACAT 59.898 45.833 19.72 0.00 41.95 3.06
158 159 3.450817 CAGGTGGTACCATGATACAGACA 59.549 47.826 19.72 0.00 41.95 3.41
159 160 3.704566 TCAGGTGGTACCATGATACAGAC 59.295 47.826 19.72 0.91 41.95 3.51
160 161 3.989056 TCAGGTGGTACCATGATACAGA 58.011 45.455 19.72 6.93 41.95 3.41
161 162 4.753516 TTCAGGTGGTACCATGATACAG 57.246 45.455 19.72 4.62 41.95 2.74
162 163 4.534500 AGTTTCAGGTGGTACCATGATACA 59.466 41.667 27.01 11.16 41.95 2.29
163 164 5.099042 AGTTTCAGGTGGTACCATGATAC 57.901 43.478 19.72 21.17 41.95 2.24
164 165 5.772393 AAGTTTCAGGTGGTACCATGATA 57.228 39.130 19.72 10.97 41.95 2.15
165 166 4.657814 AAGTTTCAGGTGGTACCATGAT 57.342 40.909 19.72 4.12 41.95 2.45
166 167 4.394729 GAAAGTTTCAGGTGGTACCATGA 58.605 43.478 19.72 15.99 41.95 3.07
167 168 3.506067 GGAAAGTTTCAGGTGGTACCATG 59.494 47.826 19.72 13.67 41.95 3.66
168 169 3.499745 GGGAAAGTTTCAGGTGGTACCAT 60.500 47.826 19.72 0.00 41.95 3.55
169 170 2.158579 GGGAAAGTTTCAGGTGGTACCA 60.159 50.000 11.60 11.60 41.95 3.25
170 171 2.158579 TGGGAAAGTTTCAGGTGGTACC 60.159 50.000 17.16 4.43 38.99 3.34
171 172 2.882761 GTGGGAAAGTTTCAGGTGGTAC 59.117 50.000 17.16 2.16 0.00 3.34
172 173 2.158579 GGTGGGAAAGTTTCAGGTGGTA 60.159 50.000 17.16 0.00 0.00 3.25
173 174 1.411074 GGTGGGAAAGTTTCAGGTGGT 60.411 52.381 17.16 0.00 0.00 4.16
174 175 1.328279 GGTGGGAAAGTTTCAGGTGG 58.672 55.000 17.16 0.00 0.00 4.61
175 176 1.328279 GGGTGGGAAAGTTTCAGGTG 58.672 55.000 17.16 0.00 0.00 4.00
176 177 0.187606 GGGGTGGGAAAGTTTCAGGT 59.812 55.000 17.16 0.00 0.00 4.00
177 178 0.187361 TGGGGTGGGAAAGTTTCAGG 59.813 55.000 17.16 0.00 0.00 3.86
178 179 1.686587 GTTGGGGTGGGAAAGTTTCAG 59.313 52.381 17.16 0.00 0.00 3.02
179 180 1.783071 GTTGGGGTGGGAAAGTTTCA 58.217 50.000 17.16 0.00 0.00 2.69
180 181 0.671796 CGTTGGGGTGGGAAAGTTTC 59.328 55.000 7.09 7.09 0.00 2.78
181 182 0.757561 CCGTTGGGGTGGGAAAGTTT 60.758 55.000 0.00 0.00 0.00 2.66
182 183 1.152631 CCGTTGGGGTGGGAAAGTT 60.153 57.895 0.00 0.00 0.00 2.66
183 184 2.518933 CCGTTGGGGTGGGAAAGT 59.481 61.111 0.00 0.00 0.00 2.66
192 193 1.143183 CCGTGATAGACCGTTGGGG 59.857 63.158 0.00 0.00 43.62 4.96
193 194 1.520787 GCCGTGATAGACCGTTGGG 60.521 63.158 0.00 0.00 40.11 4.12
194 195 0.179084 ATGCCGTGATAGACCGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
195 196 1.209128 GATGCCGTGATAGACCGTTG 58.791 55.000 0.00 0.00 0.00 4.10
196 197 0.821517 TGATGCCGTGATAGACCGTT 59.178 50.000 0.00 0.00 0.00 4.44
197 198 0.102481 GTGATGCCGTGATAGACCGT 59.898 55.000 0.00 0.00 0.00 4.83
198 199 0.597637 GGTGATGCCGTGATAGACCG 60.598 60.000 0.00 0.00 0.00 4.79
199 200 0.753262 AGGTGATGCCGTGATAGACC 59.247 55.000 0.00 0.00 43.70 3.85
200 201 3.318275 TCTTAGGTGATGCCGTGATAGAC 59.682 47.826 0.00 0.00 43.70 2.59
201 202 3.562182 TCTTAGGTGATGCCGTGATAGA 58.438 45.455 0.00 0.00 43.70 1.98
202 203 4.322080 TTCTTAGGTGATGCCGTGATAG 57.678 45.455 0.00 0.00 43.70 2.08
203 204 4.955811 ATTCTTAGGTGATGCCGTGATA 57.044 40.909 0.00 0.00 43.70 2.15
204 205 3.845781 ATTCTTAGGTGATGCCGTGAT 57.154 42.857 0.00 0.00 43.70 3.06
205 206 3.627395 AATTCTTAGGTGATGCCGTGA 57.373 42.857 0.00 0.00 43.70 4.35
206 207 3.065371 GGAAATTCTTAGGTGATGCCGTG 59.935 47.826 0.00 0.00 43.70 4.94
207 208 3.279434 GGAAATTCTTAGGTGATGCCGT 58.721 45.455 0.00 0.00 43.70 5.68
208 209 3.278574 TGGAAATTCTTAGGTGATGCCG 58.721 45.455 0.00 0.00 43.70 5.69
209 210 3.633986 CCTGGAAATTCTTAGGTGATGCC 59.366 47.826 8.11 0.00 37.58 4.40
210 211 4.273318 ACCTGGAAATTCTTAGGTGATGC 58.727 43.478 17.17 0.00 41.76 3.91
215 216 3.307480 CGACCACCTGGAAATTCTTAGGT 60.307 47.826 13.80 13.80 44.05 3.08
216 217 3.055385 TCGACCACCTGGAAATTCTTAGG 60.055 47.826 0.00 12.79 38.94 2.69
217 218 4.202245 TCGACCACCTGGAAATTCTTAG 57.798 45.455 0.00 0.00 38.94 2.18
566 567 2.898472 AATAGGTGAGGGAGGCGGCT 62.898 60.000 13.09 13.09 0.00 5.52
567 568 2.444256 AATAGGTGAGGGAGGCGGC 61.444 63.158 0.00 0.00 0.00 6.53
568 569 1.048724 TCAATAGGTGAGGGAGGCGG 61.049 60.000 0.00 0.00 0.00 6.13
569 570 0.105039 GTCAATAGGTGAGGGAGGCG 59.895 60.000 0.00 0.00 36.74 5.52
570 571 1.501582 AGTCAATAGGTGAGGGAGGC 58.498 55.000 0.00 0.00 36.74 4.70
571 572 3.070302 GCTTAGTCAATAGGTGAGGGAGG 59.930 52.174 0.00 0.00 36.74 4.30
572 573 3.706594 TGCTTAGTCAATAGGTGAGGGAG 59.293 47.826 0.00 0.00 36.74 4.30
573 574 3.719871 TGCTTAGTCAATAGGTGAGGGA 58.280 45.455 0.00 0.00 36.74 4.20
574 575 4.487714 TTGCTTAGTCAATAGGTGAGGG 57.512 45.455 0.00 0.00 36.74 4.30
575 576 5.757320 CAGATTGCTTAGTCAATAGGTGAGG 59.243 44.000 2.82 0.00 36.74 3.86
576 577 6.478344 GTCAGATTGCTTAGTCAATAGGTGAG 59.522 42.308 2.82 0.00 36.74 3.51
577 578 6.070824 TGTCAGATTGCTTAGTCAATAGGTGA 60.071 38.462 2.82 4.34 36.85 4.02
578 579 6.108687 TGTCAGATTGCTTAGTCAATAGGTG 58.891 40.000 2.82 2.65 36.85 4.00
579 580 6.299805 TGTCAGATTGCTTAGTCAATAGGT 57.700 37.500 2.82 0.00 36.85 3.08
580 581 6.820656 ACTTGTCAGATTGCTTAGTCAATAGG 59.179 38.462 2.82 0.29 36.85 2.57
581 582 7.840342 ACTTGTCAGATTGCTTAGTCAATAG 57.160 36.000 2.82 0.14 36.85 1.73
582 583 9.371136 CTAACTTGTCAGATTGCTTAGTCAATA 57.629 33.333 2.82 0.00 36.85 1.90
583 584 7.148340 GCTAACTTGTCAGATTGCTTAGTCAAT 60.148 37.037 2.51 2.51 39.20 2.57
584 585 6.147821 GCTAACTTGTCAGATTGCTTAGTCAA 59.852 38.462 0.00 0.00 0.00 3.18
585 586 5.639506 GCTAACTTGTCAGATTGCTTAGTCA 59.360 40.000 0.00 0.00 0.00 3.41
586 587 5.064071 GGCTAACTTGTCAGATTGCTTAGTC 59.936 44.000 0.00 0.00 0.00 2.59
587 588 4.938226 GGCTAACTTGTCAGATTGCTTAGT 59.062 41.667 0.00 0.00 0.00 2.24
588 589 4.333926 GGGCTAACTTGTCAGATTGCTTAG 59.666 45.833 0.00 0.00 0.00 2.18
589 590 4.261801 GGGCTAACTTGTCAGATTGCTTA 58.738 43.478 0.00 0.00 0.00 3.09
590 591 3.084786 GGGCTAACTTGTCAGATTGCTT 58.915 45.455 0.00 0.00 0.00 3.91
591 592 2.040278 TGGGCTAACTTGTCAGATTGCT 59.960 45.455 0.00 0.00 0.00 3.91
592 593 2.162408 GTGGGCTAACTTGTCAGATTGC 59.838 50.000 0.00 0.00 0.00 3.56
593 594 3.679389 AGTGGGCTAACTTGTCAGATTG 58.321 45.455 0.00 0.00 0.00 2.67
594 595 4.373156 AAGTGGGCTAACTTGTCAGATT 57.627 40.909 5.51 0.00 38.95 2.40
595 596 4.532521 ACTAAGTGGGCTAACTTGTCAGAT 59.467 41.667 13.92 0.00 40.58 2.90
596 597 3.901844 ACTAAGTGGGCTAACTTGTCAGA 59.098 43.478 13.92 0.00 40.58 3.27
597 598 4.273148 ACTAAGTGGGCTAACTTGTCAG 57.727 45.455 13.92 7.84 40.58 3.51
598 599 5.811796 TTACTAAGTGGGCTAACTTGTCA 57.188 39.130 13.92 2.95 40.58 3.58
599 600 5.410746 GGTTTACTAAGTGGGCTAACTTGTC 59.589 44.000 13.92 2.81 40.58 3.18
600 601 5.311265 GGTTTACTAAGTGGGCTAACTTGT 58.689 41.667 13.92 12.04 40.58 3.16
601 602 4.698780 GGGTTTACTAAGTGGGCTAACTTG 59.301 45.833 13.92 8.17 40.58 3.16
602 603 4.600547 AGGGTTTACTAAGTGGGCTAACTT 59.399 41.667 10.24 10.24 42.89 2.66
603 604 4.019591 CAGGGTTTACTAAGTGGGCTAACT 60.020 45.833 0.00 0.00 0.00 2.24
604 605 4.259356 CAGGGTTTACTAAGTGGGCTAAC 58.741 47.826 0.00 0.00 0.00 2.34
605 606 3.911894 ACAGGGTTTACTAAGTGGGCTAA 59.088 43.478 0.00 0.00 0.00 3.09
606 607 3.523792 ACAGGGTTTACTAAGTGGGCTA 58.476 45.455 0.00 0.00 0.00 3.93
607 608 2.345560 ACAGGGTTTACTAAGTGGGCT 58.654 47.619 0.00 0.00 0.00 5.19
608 609 2.873094 ACAGGGTTTACTAAGTGGGC 57.127 50.000 0.00 0.00 0.00 5.36
609 610 9.470399 AATAATTTACAGGGTTTACTAAGTGGG 57.530 33.333 0.00 0.00 0.00 4.61
616 617 9.948964 ACGTAAGAATAATTTACAGGGTTTACT 57.051 29.630 0.00 0.00 43.62 2.24
617 618 9.977762 CACGTAAGAATAATTTACAGGGTTTAC 57.022 33.333 0.00 0.00 43.62 2.01
618 619 9.723601 ACACGTAAGAATAATTTACAGGGTTTA 57.276 29.630 0.00 0.00 43.62 2.01
619 620 8.625786 ACACGTAAGAATAATTTACAGGGTTT 57.374 30.769 0.00 0.00 43.62 3.27
620 621 9.374838 CTACACGTAAGAATAATTTACAGGGTT 57.625 33.333 0.00 0.00 43.62 4.11
621 622 7.493645 GCTACACGTAAGAATAATTTACAGGGT 59.506 37.037 1.43 0.00 43.62 4.34
622 623 7.493320 TGCTACACGTAAGAATAATTTACAGGG 59.507 37.037 1.43 0.00 43.62 4.45
623 624 8.415192 TGCTACACGTAAGAATAATTTACAGG 57.585 34.615 1.43 0.00 43.62 4.00
629 630 9.811995 TCAGTAATGCTACACGTAAGAATAATT 57.188 29.630 1.43 0.00 43.62 1.40
630 631 9.464714 CTCAGTAATGCTACACGTAAGAATAAT 57.535 33.333 1.43 0.00 43.62 1.28
631 632 7.919091 CCTCAGTAATGCTACACGTAAGAATAA 59.081 37.037 1.43 0.00 43.62 1.40
632 633 7.423199 CCTCAGTAATGCTACACGTAAGAATA 58.577 38.462 1.43 0.00 43.62 1.75
633 634 6.273825 CCTCAGTAATGCTACACGTAAGAAT 58.726 40.000 1.43 0.00 43.62 2.40
634 635 5.647589 CCTCAGTAATGCTACACGTAAGAA 58.352 41.667 1.43 0.00 43.62 2.52
635 636 4.439700 GCCTCAGTAATGCTACACGTAAGA 60.440 45.833 1.43 0.00 43.62 2.10
637 638 3.732774 CGCCTCAGTAATGCTACACGTAA 60.733 47.826 0.00 0.00 0.00 3.18
638 639 2.223409 CGCCTCAGTAATGCTACACGTA 60.223 50.000 0.00 0.00 0.00 3.57
639 640 1.469251 CGCCTCAGTAATGCTACACGT 60.469 52.381 0.00 0.00 0.00 4.49
640 641 1.200483 CGCCTCAGTAATGCTACACG 58.800 55.000 0.00 0.00 0.00 4.49
641 642 2.194271 GTCGCCTCAGTAATGCTACAC 58.806 52.381 0.00 0.00 0.00 2.90
642 643 1.136305 GGTCGCCTCAGTAATGCTACA 59.864 52.381 0.00 0.00 0.00 2.74
643 644 1.538419 GGGTCGCCTCAGTAATGCTAC 60.538 57.143 0.00 0.00 0.00 3.58
644 645 0.750850 GGGTCGCCTCAGTAATGCTA 59.249 55.000 0.00 0.00 0.00 3.49
645 646 0.978146 AGGGTCGCCTCAGTAATGCT 60.978 55.000 0.00 0.00 0.00 3.79
646 647 0.107654 AAGGGTCGCCTCAGTAATGC 60.108 55.000 0.00 0.00 0.00 3.56
647 648 1.066143 ACAAGGGTCGCCTCAGTAATG 60.066 52.381 0.00 0.00 0.00 1.90
648 649 1.066143 CACAAGGGTCGCCTCAGTAAT 60.066 52.381 0.00 0.00 0.00 1.89
649 650 0.320374 CACAAGGGTCGCCTCAGTAA 59.680 55.000 0.00 0.00 0.00 2.24
650 651 0.830444 ACACAAGGGTCGCCTCAGTA 60.830 55.000 0.00 0.00 0.00 2.74
651 652 1.696097 AACACAAGGGTCGCCTCAGT 61.696 55.000 0.00 0.00 0.00 3.41
652 653 0.535102 AAACACAAGGGTCGCCTCAG 60.535 55.000 0.00 0.00 0.00 3.35
653 654 0.534203 GAAACACAAGGGTCGCCTCA 60.534 55.000 0.00 0.00 0.00 3.86
654 655 1.235281 GGAAACACAAGGGTCGCCTC 61.235 60.000 0.00 0.00 0.00 4.70
655 656 1.228154 GGAAACACAAGGGTCGCCT 60.228 57.895 0.00 0.00 0.00 5.52
656 657 0.822121 AAGGAAACACAAGGGTCGCC 60.822 55.000 0.00 0.00 0.00 5.54
657 658 0.591659 GAAGGAAACACAAGGGTCGC 59.408 55.000 0.00 0.00 0.00 5.19
658 659 0.865769 CGAAGGAAACACAAGGGTCG 59.134 55.000 0.00 0.00 0.00 4.79
659 660 2.249844 TCGAAGGAAACACAAGGGTC 57.750 50.000 0.00 0.00 0.00 4.46
660 661 2.504367 CATCGAAGGAAACACAAGGGT 58.496 47.619 0.00 0.00 0.00 4.34
661 662 1.200020 GCATCGAAGGAAACACAAGGG 59.800 52.381 0.00 0.00 0.00 3.95
662 663 1.879380 TGCATCGAAGGAAACACAAGG 59.121 47.619 0.00 0.00 0.00 3.61
663 664 3.189080 TGATGCATCGAAGGAAACACAAG 59.811 43.478 21.34 0.00 0.00 3.16
664 665 3.058293 GTGATGCATCGAAGGAAACACAA 60.058 43.478 21.34 0.00 0.00 3.33
665 666 2.483877 GTGATGCATCGAAGGAAACACA 59.516 45.455 21.34 0.00 0.00 3.72
666 667 2.159517 GGTGATGCATCGAAGGAAACAC 60.160 50.000 21.34 10.95 0.00 3.32
667 668 2.083774 GGTGATGCATCGAAGGAAACA 58.916 47.619 21.34 0.00 0.00 2.83
668 669 1.062587 CGGTGATGCATCGAAGGAAAC 59.937 52.381 21.34 11.73 40.81 2.78
669 670 1.368641 CGGTGATGCATCGAAGGAAA 58.631 50.000 21.34 0.00 40.81 3.13
670 671 1.089481 GCGGTGATGCATCGAAGGAA 61.089 55.000 21.34 0.00 40.81 3.36
671 672 1.521457 GCGGTGATGCATCGAAGGA 60.521 57.895 21.34 0.56 40.81 3.36
672 673 2.874694 CGCGGTGATGCATCGAAGG 61.875 63.158 21.34 11.54 40.81 3.46
673 674 2.622629 CGCGGTGATGCATCGAAG 59.377 61.111 21.34 14.95 40.81 3.79
713 714 1.269831 GCCATCTACCTGACGATGACC 60.270 57.143 0.00 0.00 39.43 4.02
715 716 0.668535 CGCCATCTACCTGACGATGA 59.331 55.000 0.00 0.00 39.43 2.92
720 721 2.962253 GCGCGCCATCTACCTGAC 60.962 66.667 23.24 0.00 0.00 3.51
749 752 0.600255 ACTTGAAGGAGCGAACCACG 60.600 55.000 0.00 0.00 45.66 4.94
750 753 1.149148 GACTTGAAGGAGCGAACCAC 58.851 55.000 0.00 0.00 0.00 4.16
751 754 0.756294 TGACTTGAAGGAGCGAACCA 59.244 50.000 0.00 0.00 0.00 3.67
752 755 1.531578 GTTGACTTGAAGGAGCGAACC 59.468 52.381 0.00 0.00 0.00 3.62
753 756 1.531578 GGTTGACTTGAAGGAGCGAAC 59.468 52.381 0.00 0.00 0.00 3.95
755 758 1.000955 GAGGTTGACTTGAAGGAGCGA 59.999 52.381 0.00 0.00 0.00 4.93
756 759 1.001406 AGAGGTTGACTTGAAGGAGCG 59.999 52.381 0.00 0.00 0.00 5.03
757 760 2.849294 AGAGGTTGACTTGAAGGAGC 57.151 50.000 0.00 0.00 0.00 4.70
758 761 4.202305 ACTGAAGAGGTTGACTTGAAGGAG 60.202 45.833 0.00 0.00 0.00 3.69
759 762 3.711704 ACTGAAGAGGTTGACTTGAAGGA 59.288 43.478 0.00 0.00 0.00 3.36
761 764 3.738282 CGACTGAAGAGGTTGACTTGAAG 59.262 47.826 0.00 0.00 0.00 3.02
763 766 2.545952 GCGACTGAAGAGGTTGACTTGA 60.546 50.000 0.00 0.00 0.00 3.02
764 767 1.795286 GCGACTGAAGAGGTTGACTTG 59.205 52.381 0.00 0.00 0.00 3.16
767 770 1.140816 GTGCGACTGAAGAGGTTGAC 58.859 55.000 0.00 0.00 0.00 3.18
783 786 2.050985 GTGCAAGCGGTTCAGTGC 60.051 61.111 0.00 0.00 37.51 4.40
793 796 1.466360 CGGCTAAACATCAGTGCAAGC 60.466 52.381 0.00 0.00 0.00 4.01
883 892 5.271598 AGCTTTAAATGGTTGGATGGATGA 58.728 37.500 0.00 0.00 0.00 2.92
929 938 5.108385 ACAAAAGGTTTCTAGATGTTGCG 57.892 39.130 0.00 0.00 0.00 4.85
1172 1195 2.190578 GGAAGGCGAGGATGGTGG 59.809 66.667 0.00 0.00 0.00 4.61
1185 1208 2.999355 CTGGAGCTTTTCTTCGAGGAAG 59.001 50.000 10.08 1.03 40.65 3.46
1229 2256 7.008941 AGCAGGATGATTGCCTAAAGAATTAT 58.991 34.615 0.00 0.00 42.48 1.28
1271 2405 0.935196 GCCGATTTGTACCGATGGTC 59.065 55.000 0.00 0.00 37.09 4.02
1310 2458 2.679716 GCCCCATCAAGCTCCTGT 59.320 61.111 0.00 0.00 0.00 4.00
1311 2459 2.515523 CGCCCCATCAAGCTCCTG 60.516 66.667 0.00 0.00 0.00 3.86
1447 2595 1.727335 GCTCGAGGTAGAACTTGTTGC 59.273 52.381 15.58 0.00 0.00 4.17
1763 2914 2.830370 GGAAGCGCTCCCATTGGG 60.830 66.667 16.26 16.26 46.11 4.12
2149 3324 2.352422 GCCCAGTCATGCCTCACA 59.648 61.111 0.00 0.00 0.00 3.58
2150 3325 2.821366 CGCCCAGTCATGCCTCAC 60.821 66.667 0.00 0.00 0.00 3.51
2866 4048 0.803768 CTTGTCAGCGATGGAGGTCG 60.804 60.000 0.00 0.00 44.14 4.79
3053 4235 2.166907 TGTGGTTGGGGTTGTTGATT 57.833 45.000 0.00 0.00 0.00 2.57
3100 4282 0.888619 GATGAGTGGACAGTGGTCGA 59.111 55.000 0.00 0.00 45.28 4.20
3117 4299 0.905357 CGGGGAGAACAGTCAAGGAT 59.095 55.000 0.00 0.00 0.00 3.24
3887 5071 0.460109 GTTTGCGAAATCCCATGCCC 60.460 55.000 0.00 0.00 0.00 5.36
4466 5651 2.430465 GCGAACATGGATATGCTGGAT 58.570 47.619 0.00 0.00 37.85 3.41
4636 5821 4.740822 GGGAGGCGCCAATGGTGT 62.741 66.667 31.54 5.22 38.95 4.16
4775 5963 1.539929 CGGGATAGCAGAGAGGCTTTG 60.540 57.143 0.00 0.00 42.71 2.77
4894 6082 2.768527 AGGAAATCTCGAATGAGCCTGA 59.231 45.455 0.00 0.00 42.26 3.86
5203 6394 0.692419 AGCAATCTCGGGGATGGAGT 60.692 55.000 0.00 0.00 34.45 3.85
5228 6419 0.392998 TCGGAATGAGGGCAGAAAGC 60.393 55.000 0.00 0.00 44.65 3.51
5315 6506 2.907179 GCAGGGGTGTAAGGTGCCT 61.907 63.158 0.00 0.00 0.00 4.75
5331 6522 0.249280 ACATATTCGATGACCGCGCA 60.249 50.000 8.75 0.00 38.37 6.09
5707 6909 4.483243 GAAGGGCGGGAATGCGGA 62.483 66.667 0.00 0.00 35.06 5.54
6130 7337 1.404748 GGGTAGTGCTCGAGGTAGAAC 59.595 57.143 15.58 0.00 0.00 3.01
6131 7338 1.760192 GGGTAGTGCTCGAGGTAGAA 58.240 55.000 15.58 0.00 0.00 2.10
6132 7339 0.463295 CGGGTAGTGCTCGAGGTAGA 60.463 60.000 15.58 0.00 45.67 2.59
6133 7340 0.463295 TCGGGTAGTGCTCGAGGTAG 60.463 60.000 15.58 0.00 46.45 3.18
6147 7354 2.245582 CGGTAGGGAAGATATTCGGGT 58.754 52.381 0.00 0.00 0.00 5.28
6181 7388 1.256376 CGCGACTGAAGTCATATGTGC 59.744 52.381 0.00 3.96 44.99 4.57
6184 7391 2.492019 TCCGCGACTGAAGTCATATG 57.508 50.000 8.23 0.00 44.99 1.78
6193 7640 1.476488 TGAGATTGATTCCGCGACTGA 59.524 47.619 8.23 0.00 0.00 3.41
6199 7646 2.930040 TCTCGTTTGAGATTGATTCCGC 59.070 45.455 0.00 0.00 46.25 5.54
6289 7799 0.180642 TGTTGGCCGTTGTACTTGGA 59.819 50.000 0.00 0.00 0.00 3.53
6312 7822 1.760613 AGTTCCTTGACGACCTTGTGA 59.239 47.619 0.00 0.00 0.00 3.58
6375 7885 3.931578 CTTCATATCGAAGGTGGGGATC 58.068 50.000 0.00 0.00 46.39 3.36
6420 7930 7.049754 TCTTCTACACACATACGTCATAGGTA 58.950 38.462 0.00 0.00 0.00 3.08
6433 7943 6.054941 TCATTTTTCTGCTCTTCTACACACA 58.945 36.000 0.00 0.00 0.00 3.72
6539 8131 6.208204 CCTCATGGCCTATAAAGATTTCCTTG 59.792 42.308 3.32 0.00 34.79 3.61
6819 8516 1.517242 GAGTGTGGCTTCTTGACTGG 58.483 55.000 0.00 0.00 0.00 4.00
6938 8635 9.192642 ACAGATTGATCATTCATTTGTATGGAA 57.807 29.630 17.49 0.00 32.40 3.53
7049 8746 9.869757 CCAATTTCTTTCTATTCCCGTATTTTT 57.130 29.630 0.00 0.00 0.00 1.94
7211 8908 8.630054 AAACAAAAGTAAGGTATATGTGCTGA 57.370 30.769 0.00 0.00 0.00 4.26
7270 8967 7.765819 CCTCAAAAGAAAACAAAAGTTCCATCT 59.234 33.333 0.00 0.00 0.00 2.90
7327 9024 2.289133 TGCAACATCCAAGTACGTAGCA 60.289 45.455 0.00 0.00 0.00 3.49
7375 9072 1.191489 TCAACATCACTCGCCCTCCA 61.191 55.000 0.00 0.00 0.00 3.86
7535 9232 0.251386 AGCGACTGGACTCAAGGAGA 60.251 55.000 0.00 0.00 33.32 3.71
7579 9276 0.911769 TGATAGTGCAGGTGGGAAGG 59.088 55.000 0.00 0.00 0.00 3.46
7641 12026 2.568623 AGGTAAAGACTTGCCTGGTG 57.431 50.000 9.93 0.00 45.13 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.