Multiple sequence alignment - TraesCS7D01G490000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G490000 chr7D 100.000 5278 0 0 1 5278 599485439 599480162 0.000000e+00 9747.0
1 TraesCS7D01G490000 chr7D 90.860 186 15 2 4691 4876 602908056 602908239 1.140000e-61 248.0
2 TraesCS7D01G490000 chr7A 90.873 3002 175 39 235 3176 691600242 691603204 0.000000e+00 3934.0
3 TraesCS7D01G490000 chr7A 89.684 1454 87 27 3158 4591 691603216 691604626 0.000000e+00 1796.0
4 TraesCS7D01G490000 chr7A 92.432 185 10 4 4695 4876 691604769 691604952 1.460000e-65 261.0
5 TraesCS7D01G490000 chr7A 91.892 185 14 1 4692 4876 694552527 694552710 1.890000e-64 257.0
6 TraesCS7D01G490000 chr7A 86.818 220 26 3 4869 5086 691604970 691605188 5.280000e-60 243.0
7 TraesCS7D01G490000 chr7B 92.051 2453 141 23 2005 4441 678772902 678770488 0.000000e+00 3400.0
8 TraesCS7D01G490000 chr7B 88.046 1581 97 33 451 1987 678774399 678772867 0.000000e+00 1788.0
9 TraesCS7D01G490000 chr7B 87.643 437 24 5 4677 5085 678770212 678769778 1.030000e-131 481.0
10 TraesCS7D01G490000 chr7B 89.617 183 18 1 4694 4876 683562587 683562768 1.140000e-56 231.0
11 TraesCS7D01G490000 chr7B 89.071 183 18 2 4694 4876 683757856 683758036 5.320000e-55 226.0
12 TraesCS7D01G490000 chr7B 85.022 227 6 9 5080 5278 678769750 678769524 6.930000e-49 206.0
13 TraesCS7D01G490000 chr7B 89.404 151 14 2 4694 4844 683757264 683757412 6.980000e-44 189.0
14 TraesCS7D01G490000 chr3B 90.000 170 16 1 1783 1951 737333684 737333515 8.900000e-53 219.0
15 TraesCS7D01G490000 chr3B 87.500 184 15 5 1772 1952 737379363 737379185 6.930000e-49 206.0
16 TraesCS7D01G490000 chr2A 92.308 52 2 2 1899 1949 491460717 491460767 7.330000e-09 73.1
17 TraesCS7D01G490000 chr2A 83.117 77 8 4 184 257 726755081 726755155 1.230000e-06 65.8
18 TraesCS7D01G490000 chr1D 92.308 52 2 2 1899 1949 486921105 486921155 7.330000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G490000 chr7D 599480162 599485439 5277 True 9747.00 9747 100.00000 1 5278 1 chr7D.!!$R1 5277
1 TraesCS7D01G490000 chr7A 691600242 691605188 4946 False 1558.50 3934 89.95175 235 5086 4 chr7A.!!$F2 4851
2 TraesCS7D01G490000 chr7B 678769524 678774399 4875 True 1468.75 3400 88.19050 451 5278 4 chr7B.!!$R1 4827
3 TraesCS7D01G490000 chr7B 683757264 683758036 772 False 207.50 226 89.23750 4694 4876 2 chr7B.!!$F2 182

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.035630 AATGTGAGGCTGACTCTGGC 60.036 55.000 12.54 2.94 46.72 4.85 F
300 301 0.179062 GCTGACTCTGGCGATGGAAT 60.179 55.000 0.00 0.00 0.00 3.01 F
322 323 0.249911 ACAGAGACGGTGTTTGGCTC 60.250 55.000 1.00 0.00 0.00 4.70 F
1374 1418 0.901827 TGGAGACATGCGAGGCTAAA 59.098 50.000 0.00 0.00 33.40 1.85 F
2182 2260 1.291184 TTCATGCACGCTCCGAACAG 61.291 55.000 0.00 0.00 0.00 3.16 F
3181 3301 1.004862 TCAGAGTGATCGACCTGAGGT 59.995 52.381 2.41 2.41 39.44 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 1661 0.396435 TCCACCGAACAGCTGAACAT 59.604 50.000 23.35 3.00 0.00 2.71 R
2231 2309 0.951040 GGGACTTGAGTCGGTTGCTG 60.951 60.000 5.16 0.00 45.65 4.41 R
2240 2318 4.330250 CATCAAATGACTGGGACTTGAGT 58.670 43.478 0.00 0.00 30.10 3.41 R
2501 2579 0.036577 CTCTTCAGTGACCTGCAGGG 60.037 60.000 35.42 18.05 38.66 4.45 R
4148 4281 0.316204 GCAAGTGCAGCACCTGAAAT 59.684 50.000 25.61 2.50 41.59 2.17 R
4665 4875 0.249363 TGCGCTGCTGCAAAAATGAA 60.249 45.000 16.29 0.00 43.02 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.340814 AATGTTGAGAAGATGTCGGCT 57.659 42.857 0.00 0.00 0.00 5.52
22 23 4.471904 AATGTTGAGAAGATGTCGGCTA 57.528 40.909 0.00 0.00 0.00 3.93
25 26 5.791336 TGTTGAGAAGATGTCGGCTATAT 57.209 39.130 0.00 0.00 0.00 0.86
26 27 6.161855 TGTTGAGAAGATGTCGGCTATATT 57.838 37.500 0.00 0.00 0.00 1.28
28 29 5.048153 TGAGAAGATGTCGGCTATATTCG 57.952 43.478 0.00 0.00 32.55 3.34
29 30 4.760204 TGAGAAGATGTCGGCTATATTCGA 59.240 41.667 0.00 0.00 32.55 3.71
30 31 5.416013 TGAGAAGATGTCGGCTATATTCGAT 59.584 40.000 0.00 0.00 37.73 3.59
31 32 5.885881 AGAAGATGTCGGCTATATTCGATC 58.114 41.667 0.00 0.00 37.73 3.69
32 33 5.650266 AGAAGATGTCGGCTATATTCGATCT 59.350 40.000 0.00 0.00 37.73 2.75
33 34 5.493133 AGATGTCGGCTATATTCGATCTC 57.507 43.478 0.00 2.85 37.73 2.75
34 35 5.189928 AGATGTCGGCTATATTCGATCTCT 58.810 41.667 0.00 4.54 37.73 3.10
37 38 3.690139 GTCGGCTATATTCGATCTCTCCA 59.310 47.826 0.00 0.00 37.73 3.86
38 39 4.336993 GTCGGCTATATTCGATCTCTCCAT 59.663 45.833 0.00 0.00 37.73 3.41
39 40 4.576873 TCGGCTATATTCGATCTCTCCATC 59.423 45.833 0.00 0.00 0.00 3.51
40 41 4.336713 CGGCTATATTCGATCTCTCCATCA 59.663 45.833 0.00 0.00 0.00 3.07
41 42 5.163612 CGGCTATATTCGATCTCTCCATCAA 60.164 44.000 0.00 0.00 0.00 2.57
42 43 6.039616 GGCTATATTCGATCTCTCCATCAAC 58.960 44.000 0.00 0.00 0.00 3.18
43 44 6.350528 GGCTATATTCGATCTCTCCATCAACA 60.351 42.308 0.00 0.00 0.00 3.33
45 46 4.743057 ATTCGATCTCTCCATCAACACA 57.257 40.909 0.00 0.00 0.00 3.72
46 47 4.535526 TTCGATCTCTCCATCAACACAA 57.464 40.909 0.00 0.00 0.00 3.33
47 48 4.743057 TCGATCTCTCCATCAACACAAT 57.257 40.909 0.00 0.00 0.00 2.71
48 49 5.852282 TCGATCTCTCCATCAACACAATA 57.148 39.130 0.00 0.00 0.00 1.90
50 51 6.218746 TCGATCTCTCCATCAACACAATATG 58.781 40.000 0.00 0.00 0.00 1.78
51 52 6.040842 TCGATCTCTCCATCAACACAATATGA 59.959 38.462 0.00 0.00 0.00 2.15
52 53 6.703165 CGATCTCTCCATCAACACAATATGAA 59.297 38.462 0.00 0.00 0.00 2.57
54 55 7.186570 TCTCTCCATCAACACAATATGAAGA 57.813 36.000 0.00 0.00 0.00 2.87
56 57 7.550551 TCTCTCCATCAACACAATATGAAGAAC 59.449 37.037 0.00 0.00 0.00 3.01
57 58 7.397221 TCTCCATCAACACAATATGAAGAACT 58.603 34.615 0.00 0.00 0.00 3.01
59 60 8.492673 TCCATCAACACAATATGAAGAACTAC 57.507 34.615 0.00 0.00 0.00 2.73
60 61 8.321353 TCCATCAACACAATATGAAGAACTACT 58.679 33.333 0.00 0.00 0.00 2.57
62 63 9.154847 CATCAACACAATATGAAGAACTACTCA 57.845 33.333 0.00 0.00 0.00 3.41
63 64 9.725019 ATCAACACAATATGAAGAACTACTCAA 57.275 29.630 0.00 0.00 0.00 3.02
64 65 9.208022 TCAACACAATATGAAGAACTACTCAAG 57.792 33.333 0.00 0.00 0.00 3.02
65 66 9.208022 CAACACAATATGAAGAACTACTCAAGA 57.792 33.333 0.00 0.00 0.00 3.02
66 67 9.950496 AACACAATATGAAGAACTACTCAAGAT 57.050 29.630 0.00 0.00 0.00 2.40
73 74 7.265647 TGAAGAACTACTCAAGATATCGAGG 57.734 40.000 11.05 0.13 33.36 4.63
75 76 7.721842 TGAAGAACTACTCAAGATATCGAGGAT 59.278 37.037 11.05 0.00 33.36 3.24
76 77 9.221933 GAAGAACTACTCAAGATATCGAGGATA 57.778 37.037 11.05 0.00 33.36 2.59
77 78 9.747898 AAGAACTACTCAAGATATCGAGGATAT 57.252 33.333 11.05 0.00 37.87 1.63
94 95 9.238368 TCGAGGATATATACATGATTGTACACA 57.762 33.333 0.00 0.00 41.02 3.72
95 96 9.290483 CGAGGATATATACATGATTGTACACAC 57.710 37.037 0.00 0.00 41.02 3.82
96 97 9.290483 GAGGATATATACATGATTGTACACACG 57.710 37.037 0.00 0.00 41.02 4.49
98 99 8.248253 GGATATATACATGATTGTACACACGGA 58.752 37.037 0.00 0.00 41.02 4.69
99 100 9.634163 GATATATACATGATTGTACACACGGAA 57.366 33.333 0.00 0.00 41.02 4.30
100 101 7.709269 ATATACATGATTGTACACACGGAAC 57.291 36.000 0.00 0.00 41.02 3.62
101 102 3.734463 ACATGATTGTACACACGGAACA 58.266 40.909 0.00 0.00 33.16 3.18
102 103 4.130857 ACATGATTGTACACACGGAACAA 58.869 39.130 0.00 0.00 37.51 2.83
103 104 4.759693 ACATGATTGTACACACGGAACAAT 59.240 37.500 0.00 0.00 44.35 2.71
104 105 5.935206 ACATGATTGTACACACGGAACAATA 59.065 36.000 0.00 0.00 42.35 1.90
105 106 6.597672 ACATGATTGTACACACGGAACAATAT 59.402 34.615 0.00 0.00 42.35 1.28
106 107 6.415798 TGATTGTACACACGGAACAATATG 57.584 37.500 0.00 0.00 42.35 1.78
108 109 4.274602 TGTACACACGGAACAATATGGT 57.725 40.909 0.00 0.00 0.00 3.55
111 112 3.869065 ACACACGGAACAATATGGTAGG 58.131 45.455 0.00 0.00 0.00 3.18
112 113 3.262405 ACACACGGAACAATATGGTAGGT 59.738 43.478 0.00 0.00 0.00 3.08
113 114 4.258543 CACACGGAACAATATGGTAGGTT 58.741 43.478 0.00 0.00 0.00 3.50
114 115 5.046448 ACACACGGAACAATATGGTAGGTTA 60.046 40.000 0.00 0.00 0.00 2.85
115 116 6.053005 CACACGGAACAATATGGTAGGTTAT 58.947 40.000 0.00 0.00 0.00 1.89
116 117 6.018262 CACACGGAACAATATGGTAGGTTATG 60.018 42.308 0.00 0.00 0.00 1.90
118 119 6.540914 CACGGAACAATATGGTAGGTTATGTT 59.459 38.462 0.00 0.00 0.00 2.71
120 121 8.434392 ACGGAACAATATGGTAGGTTATGTTAT 58.566 33.333 0.00 0.00 0.00 1.89
121 122 9.932207 CGGAACAATATGGTAGGTTATGTTATA 57.068 33.333 0.00 0.00 0.00 0.98
135 136 9.326413 AGGTTATGTTATATGAAGAAGAAACGG 57.674 33.333 0.00 0.00 0.00 4.44
136 137 9.321562 GGTTATGTTATATGAAGAAGAAACGGA 57.678 33.333 0.00 0.00 0.00 4.69
138 139 9.542462 TTATGTTATATGAAGAAGAAACGGAGG 57.458 33.333 0.00 0.00 0.00 4.30
139 140 7.177832 TGTTATATGAAGAAGAAACGGAGGA 57.822 36.000 0.00 0.00 0.00 3.71
140 141 7.617225 TGTTATATGAAGAAGAAACGGAGGAA 58.383 34.615 0.00 0.00 0.00 3.36
141 142 8.098286 TGTTATATGAAGAAGAAACGGAGGAAA 58.902 33.333 0.00 0.00 0.00 3.13
142 143 9.110502 GTTATATGAAGAAGAAACGGAGGAAAT 57.889 33.333 0.00 0.00 0.00 2.17
143 144 9.681062 TTATATGAAGAAGAAACGGAGGAAATT 57.319 29.630 0.00 0.00 0.00 1.82
144 145 6.901081 ATGAAGAAGAAACGGAGGAAATTT 57.099 33.333 0.00 0.00 0.00 1.82
146 147 5.825679 TGAAGAAGAAACGGAGGAAATTTGA 59.174 36.000 0.00 0.00 0.00 2.69
147 148 6.490040 TGAAGAAGAAACGGAGGAAATTTGAT 59.510 34.615 0.00 0.00 0.00 2.57
148 149 6.259550 AGAAGAAACGGAGGAAATTTGATG 57.740 37.500 0.00 0.00 0.00 3.07
150 151 3.193479 AGAAACGGAGGAAATTTGATGGC 59.807 43.478 0.00 0.00 0.00 4.40
151 152 2.214376 ACGGAGGAAATTTGATGGCA 57.786 45.000 0.00 0.00 0.00 4.92
152 153 2.738743 ACGGAGGAAATTTGATGGCAT 58.261 42.857 0.00 0.00 0.00 4.40
153 154 3.099141 ACGGAGGAAATTTGATGGCATT 58.901 40.909 0.00 0.00 0.00 3.56
154 155 4.277476 ACGGAGGAAATTTGATGGCATTA 58.723 39.130 0.00 0.00 0.00 1.90
156 157 5.221303 ACGGAGGAAATTTGATGGCATTATG 60.221 40.000 0.00 0.00 0.00 1.90
157 158 5.221303 CGGAGGAAATTTGATGGCATTATGT 60.221 40.000 0.00 0.00 0.00 2.29
158 159 5.987347 GGAGGAAATTTGATGGCATTATGTG 59.013 40.000 0.00 0.00 0.00 3.21
159 160 5.920903 AGGAAATTTGATGGCATTATGTGG 58.079 37.500 0.00 0.00 0.00 4.17
161 162 5.396660 GGAAATTTGATGGCATTATGTGGGT 60.397 40.000 0.00 0.00 0.00 4.51
164 165 8.489676 AAATTTGATGGCATTATGTGGGTATA 57.510 30.769 0.00 0.00 0.00 1.47
166 167 7.465353 TTTGATGGCATTATGTGGGTATATG 57.535 36.000 0.00 0.00 0.00 1.78
167 168 6.385766 TGATGGCATTATGTGGGTATATGA 57.614 37.500 0.00 0.00 0.00 2.15
169 170 8.100135 TGATGGCATTATGTGGGTATATGATA 57.900 34.615 0.00 0.00 0.00 2.15
170 171 8.555729 TGATGGCATTATGTGGGTATATGATAA 58.444 33.333 0.00 0.00 0.00 1.75
171 172 8.752005 ATGGCATTATGTGGGTATATGATAAC 57.248 34.615 0.00 0.00 0.00 1.89
172 173 7.116075 TGGCATTATGTGGGTATATGATAACC 58.884 38.462 0.00 0.00 34.85 2.85
173 174 7.116075 GGCATTATGTGGGTATATGATAACCA 58.884 38.462 0.00 0.00 37.51 3.67
183 184 8.939932 TGGGTATATGATAACCACTGTTATTCA 58.060 33.333 0.00 1.45 45.47 2.57
184 185 9.959721 GGGTATATGATAACCACTGTTATTCAT 57.040 33.333 0.00 7.22 45.47 2.57
190 191 9.770097 ATGATAACCACTGTTATTCATCTACAG 57.230 33.333 0.00 0.00 45.47 2.74
192 193 9.817809 GATAACCACTGTTATTCATCTACAGAA 57.182 33.333 8.32 0.00 45.47 3.02
194 195 7.482169 ACCACTGTTATTCATCTACAGAAGA 57.518 36.000 8.32 0.00 41.33 2.87
195 196 8.083828 ACCACTGTTATTCATCTACAGAAGAT 57.916 34.615 8.32 0.00 46.36 2.40
196 197 8.543774 ACCACTGTTATTCATCTACAGAAGATT 58.456 33.333 8.32 0.00 42.62 2.40
197 198 9.388506 CCACTGTTATTCATCTACAGAAGATTT 57.611 33.333 8.32 0.00 42.62 2.17
207 208 8.855110 TCATCTACAGAAGATTTCTAGGATGAC 58.145 37.037 16.93 0.00 42.62 3.06
208 209 8.859090 CATCTACAGAAGATTTCTAGGATGACT 58.141 37.037 15.06 0.00 42.62 3.41
209 210 8.231692 TCTACAGAAGATTTCTAGGATGACTG 57.768 38.462 0.00 0.00 38.11 3.51
210 211 6.865834 ACAGAAGATTTCTAGGATGACTGT 57.134 37.500 0.00 0.00 38.11 3.55
211 212 7.251321 ACAGAAGATTTCTAGGATGACTGTT 57.749 36.000 0.00 0.00 38.11 3.16
212 213 7.684529 ACAGAAGATTTCTAGGATGACTGTTT 58.315 34.615 0.00 0.00 38.11 2.83
213 214 7.605691 ACAGAAGATTTCTAGGATGACTGTTTG 59.394 37.037 0.00 0.00 38.11 2.93
214 215 7.605691 CAGAAGATTTCTAGGATGACTGTTTGT 59.394 37.037 0.00 0.00 38.11 2.83
215 216 8.160106 AGAAGATTTCTAGGATGACTGTTTGTT 58.840 33.333 0.00 0.00 38.49 2.83
216 217 7.913674 AGATTTCTAGGATGACTGTTTGTTC 57.086 36.000 0.00 0.00 0.00 3.18
217 218 7.684529 AGATTTCTAGGATGACTGTTTGTTCT 58.315 34.615 0.00 0.00 0.00 3.01
218 219 8.160106 AGATTTCTAGGATGACTGTTTGTTCTT 58.840 33.333 0.00 0.00 0.00 2.52
219 220 9.436957 GATTTCTAGGATGACTGTTTGTTCTTA 57.563 33.333 0.00 0.00 0.00 2.10
220 221 9.965902 ATTTCTAGGATGACTGTTTGTTCTTAT 57.034 29.630 0.00 0.00 0.00 1.73
221 222 8.777865 TTCTAGGATGACTGTTTGTTCTTATG 57.222 34.615 0.00 0.00 0.00 1.90
222 223 7.331026 TCTAGGATGACTGTTTGTTCTTATGG 58.669 38.462 0.00 0.00 0.00 2.74
223 224 4.702131 AGGATGACTGTTTGTTCTTATGGC 59.298 41.667 0.00 0.00 0.00 4.40
224 225 4.437390 GGATGACTGTTTGTTCTTATGGCG 60.437 45.833 0.00 0.00 0.00 5.69
225 226 3.472652 TGACTGTTTGTTCTTATGGCGT 58.527 40.909 0.00 0.00 0.00 5.68
226 227 3.880490 TGACTGTTTGTTCTTATGGCGTT 59.120 39.130 0.00 0.00 0.00 4.84
227 228 4.219033 GACTGTTTGTTCTTATGGCGTTG 58.781 43.478 0.00 0.00 0.00 4.10
228 229 3.004315 ACTGTTTGTTCTTATGGCGTTGG 59.996 43.478 0.00 0.00 0.00 3.77
229 230 2.952978 TGTTTGTTCTTATGGCGTTGGT 59.047 40.909 0.00 0.00 0.00 3.67
230 231 3.003897 TGTTTGTTCTTATGGCGTTGGTC 59.996 43.478 0.00 0.00 0.00 4.02
231 232 1.816074 TGTTCTTATGGCGTTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
232 233 1.072489 TGTTCTTATGGCGTTGGTCCA 59.928 47.619 0.00 0.00 38.09 4.02
233 234 1.737793 GTTCTTATGGCGTTGGTCCAG 59.262 52.381 0.00 0.00 36.98 3.86
237 238 2.535485 TATGGCGTTGGTCCAGCTGG 62.535 60.000 27.87 27.87 36.98 4.85
256 257 2.067013 GGACCTTAGCACGACAACTTC 58.933 52.381 0.00 0.00 0.00 3.01
258 259 1.068474 CCTTAGCACGACAACTTCCG 58.932 55.000 0.00 0.00 0.00 4.30
260 261 0.947180 TTAGCACGACAACTTCCGGC 60.947 55.000 0.00 0.00 0.00 6.13
262 263 2.280524 CACGACAACTTCCGGCCA 60.281 61.111 2.24 0.00 0.00 5.36
263 264 2.280592 ACGACAACTTCCGGCCAC 60.281 61.111 2.24 0.00 0.00 5.01
264 265 2.280524 CGACAACTTCCGGCCACA 60.281 61.111 2.24 0.00 0.00 4.17
266 267 1.440938 CGACAACTTCCGGCCACAAA 61.441 55.000 2.24 0.00 0.00 2.83
278 279 1.673626 GGCCACAAAGGATGCAATGTG 60.674 52.381 13.21 13.21 42.10 3.21
283 284 1.822990 CAAAGGATGCAATGTGAGGCT 59.177 47.619 0.00 0.00 0.00 4.58
289 290 0.689055 TGCAATGTGAGGCTGACTCT 59.311 50.000 12.54 0.00 46.72 3.24
291 292 1.735386 CAATGTGAGGCTGACTCTGG 58.265 55.000 12.54 0.00 46.72 3.86
292 293 0.035630 AATGTGAGGCTGACTCTGGC 60.036 55.000 12.54 2.94 46.72 4.85
299 300 1.219124 GCTGACTCTGGCGATGGAA 59.781 57.895 0.00 0.00 0.00 3.53
300 301 0.179062 GCTGACTCTGGCGATGGAAT 60.179 55.000 0.00 0.00 0.00 3.01
322 323 0.249911 ACAGAGACGGTGTTTGGCTC 60.250 55.000 1.00 0.00 0.00 4.70
328 329 3.858247 AGACGGTGTTTGGCTCTATTAC 58.142 45.455 0.00 0.00 0.00 1.89
343 344 7.450634 TGGCTCTATTACGACCTGATTATAACT 59.549 37.037 0.00 0.00 0.00 2.24
374 375 5.350504 AGGATGTCTTGTATCACTGGAAG 57.649 43.478 0.00 0.00 42.29 3.46
412 413 9.886132 AAGTAAATCTAGAGCCTTATTCGAAAA 57.114 29.630 0.00 0.00 0.00 2.29
510 514 2.049433 CGGTCGTTCTTCGGCACT 60.049 61.111 0.00 0.00 46.87 4.40
514 518 1.429463 GTCGTTCTTCGGCACTGATT 58.571 50.000 0.00 0.00 44.22 2.57
515 519 2.602878 GTCGTTCTTCGGCACTGATTA 58.397 47.619 0.00 0.00 44.22 1.75
518 522 4.982916 GTCGTTCTTCGGCACTGATTATAT 59.017 41.667 0.00 0.00 44.22 0.86
567 573 6.071984 AGATGTCAGATTAGATCGGTTACCT 58.928 40.000 0.00 0.00 0.00 3.08
573 579 6.493802 TCAGATTAGATCGGTTACCTAATGCT 59.506 38.462 0.00 0.00 34.37 3.79
616 622 2.569059 CATGAGCCAATCCTAGGTGTG 58.431 52.381 9.08 8.01 0.00 3.82
923 942 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
924 943 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
925 944 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
926 945 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
927 946 2.127980 GTCGTCGTCGTCGTCGTT 60.128 61.111 18.44 0.00 45.27 3.85
928 947 2.128017 TCGTCGTCGTCGTCGTTG 60.128 61.111 18.44 5.92 45.27 4.10
929 948 2.424157 CGTCGTCGTCGTCGTTGT 60.424 61.111 12.51 0.00 41.73 3.32
995 1023 3.412408 GCTGGGGAGGGGAGGTTC 61.412 72.222 0.00 0.00 0.00 3.62
1101 1144 2.983592 GTGCCCAACAACTCCCGG 60.984 66.667 0.00 0.00 0.00 5.73
1104 1147 3.253838 CCCAACAACTCCCGGGGA 61.254 66.667 23.50 16.55 41.49 4.81
1238 1282 6.991485 GGATACAATCTTTGTTGTTGTGTG 57.009 37.500 0.00 0.00 42.22 3.82
1239 1283 6.503524 GGATACAATCTTTGTTGTTGTGTGT 58.496 36.000 0.00 0.00 42.22 3.72
1240 1284 6.978080 GGATACAATCTTTGTTGTTGTGTGTT 59.022 34.615 0.00 0.00 42.22 3.32
1241 1285 7.043458 GGATACAATCTTTGTTGTTGTGTGTTG 60.043 37.037 0.00 0.00 42.22 3.33
1245 1289 4.742417 TCTTTGTTGTTGTGTGTTGATGG 58.258 39.130 0.00 0.00 0.00 3.51
1275 1319 1.067060 GCTGTTCTTGGTGGTGGTTTC 59.933 52.381 0.00 0.00 0.00 2.78
1371 1415 2.581354 GTGGAGACATGCGAGGCT 59.419 61.111 0.00 0.00 46.14 4.58
1374 1418 0.901827 TGGAGACATGCGAGGCTAAA 59.098 50.000 0.00 0.00 33.40 1.85
1385 1429 1.443802 GAGGCTAAACAGGTGCAGAC 58.556 55.000 0.00 0.00 0.00 3.51
1400 1444 4.531332 GTGCAGACTGATCAAAGAACAAC 58.469 43.478 6.65 0.00 0.00 3.32
1403 1447 4.274459 GCAGACTGATCAAAGAACAACACT 59.726 41.667 6.65 0.00 0.00 3.55
1422 1466 8.981647 ACAACACTATTTCAATTCTGCAATTTC 58.018 29.630 0.00 0.00 28.97 2.17
1483 1527 9.842775 AATTTCTGAACATAGCTTCTGATGATA 57.157 29.630 0.00 0.00 30.75 2.15
1518 1562 7.225931 TCAGTTCTTAGTTTACATTTCTTGCGT 59.774 33.333 0.00 0.00 0.00 5.24
1526 1570 8.950403 AGTTTACATTTCTTGCGTCTATTTTC 57.050 30.769 0.00 0.00 0.00 2.29
1542 1588 9.255568 CGTCTATTTTCTTTTCATTTCTCTTCG 57.744 33.333 0.00 0.00 0.00 3.79
1548 1594 4.997395 TCTTTTCATTTCTCTTCGGGTGAG 59.003 41.667 0.00 0.00 0.00 3.51
1573 1619 1.880027 GTGTAGTGGCAACTTGGAAGG 59.120 52.381 0.00 0.00 37.88 3.46
1587 1633 1.946768 TGGAAGGAAAGTTTGTGCTCG 59.053 47.619 0.00 0.00 0.00 5.03
1614 1661 3.500448 TTGAGTTTGGTGGCATGTCTA 57.500 42.857 0.00 0.00 0.00 2.59
1651 1698 1.483415 GGAATTAGTACGGTGGCCTGA 59.517 52.381 3.32 0.00 0.00 3.86
1792 1864 3.744660 TCCTCTGTTTTCTCTGCCTTTC 58.255 45.455 0.00 0.00 0.00 2.62
1910 1982 5.977489 TTCTAGTCGTTGGAAGATCAAGA 57.023 39.130 0.00 0.00 0.00 3.02
2182 2260 1.291184 TTCATGCACGCTCCGAACAG 61.291 55.000 0.00 0.00 0.00 3.16
2186 2264 3.782244 CACGCTCCGAACAGCTGC 61.782 66.667 15.27 0.00 37.25 5.25
2240 2318 3.240134 GACCCAGAGCAGCAACCGA 62.240 63.158 0.00 0.00 0.00 4.69
2249 2327 1.569479 GCAGCAACCGACTCAAGTCC 61.569 60.000 4.63 0.00 41.86 3.85
2268 2346 3.191371 GTCCCAGTCATTTGATGGTGAAC 59.809 47.826 7.68 0.00 31.85 3.18
2269 2347 3.074390 TCCCAGTCATTTGATGGTGAACT 59.926 43.478 7.68 0.00 31.85 3.01
2271 2349 4.281688 CCCAGTCATTTGATGGTGAACTTT 59.718 41.667 7.68 0.00 31.85 2.66
2311 2389 3.572584 CTTCTTCTGAAAACAGGCATGC 58.427 45.455 9.90 9.90 0.00 4.06
2312 2390 2.867624 TCTTCTGAAAACAGGCATGCT 58.132 42.857 18.92 0.11 0.00 3.79
2321 2399 4.870123 AAACAGGCATGCTTGTTCATTA 57.130 36.364 38.20 0.00 43.79 1.90
2323 2401 4.178545 ACAGGCATGCTTGTTCATTAAC 57.821 40.909 27.97 1.76 32.14 2.01
2324 2402 3.573538 ACAGGCATGCTTGTTCATTAACA 59.426 39.130 27.97 0.00 43.85 2.41
2393 2471 4.206375 TCAAGTTCAACATGGAGCAGAAA 58.794 39.130 0.00 0.00 0.00 2.52
2422 2500 4.436242 AAACTACTTCGATCAAGCTCGA 57.564 40.909 0.00 0.00 45.32 4.04
2501 2579 1.996187 GACCAGAGGGAGGGGAACC 60.996 68.421 0.00 0.00 45.30 3.62
2619 2697 1.743252 GCTCTGGCTTCCGTTCCTG 60.743 63.158 0.00 0.00 35.22 3.86
2673 2751 2.435059 GGCTGCTCCACGTTCTCC 60.435 66.667 0.00 0.00 34.01 3.71
2676 2754 1.153939 CTGCTCCACGTTCTCCGAG 60.154 63.158 0.00 0.00 40.70 4.63
2790 2873 4.328983 GCCTTCTGTTCATGCATTTGAATG 59.671 41.667 6.05 3.61 37.88 2.67
2842 2931 6.833839 TGCAAAATTCAGCAAGATTTAATGC 58.166 32.000 2.60 12.40 42.87 3.56
2846 2935 9.485591 CAAAATTCAGCAAGATTTAATGCAATC 57.514 29.630 0.00 0.00 44.95 2.67
2852 2941 8.255206 TCAGCAAGATTTAATGCAATCTGATTT 58.745 29.630 0.00 0.00 41.78 2.17
3085 3176 3.709567 AACGGGCTCTACCTGGTC 58.290 61.111 0.63 0.00 43.47 4.02
3155 3246 5.063204 TCCGAATGAATTTCAGTCAGTGTT 58.937 37.500 22.36 3.74 41.11 3.32
3179 3299 2.752354 AGTTCAGAGTGATCGACCTGAG 59.248 50.000 9.61 0.00 34.96 3.35
3181 3301 1.004862 TCAGAGTGATCGACCTGAGGT 59.995 52.381 2.41 2.41 39.44 3.85
3200 3321 2.752903 GGTTTTTGTCAGTGACACTGGT 59.247 45.455 30.39 0.00 45.94 4.00
3216 3348 3.129287 CACTGGTGATAATTGCAGGGAAC 59.871 47.826 0.00 0.00 0.00 3.62
3300 3432 3.670311 CAGTATCTGCACATGTTCTGC 57.330 47.619 0.00 0.00 35.03 4.26
3306 3438 1.080974 GCACATGTTCTGCAGGCAC 60.081 57.895 15.13 11.75 34.56 5.01
3373 3505 3.539604 GATGATTCTGAACCTCAGGTGG 58.460 50.000 0.00 0.00 44.39 4.61
3379 3511 1.550976 CTGAACCTCAGGTGGACCTAC 59.449 57.143 0.00 0.00 46.65 3.18
3397 3529 7.461043 TGGACCTACCATAGCCTATATTTTGAT 59.539 37.037 0.00 0.00 44.64 2.57
3398 3530 8.329502 GGACCTACCATAGCCTATATTTTGATT 58.670 37.037 0.00 0.00 38.79 2.57
3399 3531 9.740710 GACCTACCATAGCCTATATTTTGATTT 57.259 33.333 0.00 0.00 0.00 2.17
3427 3559 9.589461 TGACTCAATTAAAACCACCCTTTTATA 57.411 29.630 0.00 0.00 0.00 0.98
3465 3597 5.261209 TCCAACCAAACAACAATCTTCTG 57.739 39.130 0.00 0.00 0.00 3.02
3473 3605 6.813152 CCAAACAACAATCTTCTGTCAAAAGT 59.187 34.615 0.00 0.00 0.00 2.66
3474 3606 7.973388 CCAAACAACAATCTTCTGTCAAAAGTA 59.027 33.333 0.00 0.00 0.00 2.24
3475 3607 9.352784 CAAACAACAATCTTCTGTCAAAAGTAA 57.647 29.630 0.00 0.00 0.00 2.24
3476 3608 9.921637 AAACAACAATCTTCTGTCAAAAGTAAA 57.078 25.926 0.00 0.00 0.00 2.01
3478 3610 9.520204 ACAACAATCTTCTGTCAAAAGTAAATG 57.480 29.630 0.00 0.00 0.00 2.32
3479 3611 8.971321 CAACAATCTTCTGTCAAAAGTAAATGG 58.029 33.333 0.00 0.00 0.00 3.16
3480 3612 8.463930 ACAATCTTCTGTCAAAAGTAAATGGA 57.536 30.769 0.00 0.00 0.00 3.41
3481 3613 8.571336 ACAATCTTCTGTCAAAAGTAAATGGAG 58.429 33.333 0.00 0.00 0.00 3.86
3482 3614 8.571336 CAATCTTCTGTCAAAAGTAAATGGAGT 58.429 33.333 0.00 0.00 0.00 3.85
3483 3615 9.793259 AATCTTCTGTCAAAAGTAAATGGAGTA 57.207 29.630 0.00 0.00 0.00 2.59
3484 3616 8.603242 TCTTCTGTCAAAAGTAAATGGAGTAC 57.397 34.615 0.00 0.00 0.00 2.73
3485 3617 8.429641 TCTTCTGTCAAAAGTAAATGGAGTACT 58.570 33.333 0.00 0.00 33.12 2.73
3486 3618 8.603242 TTCTGTCAAAAGTAAATGGAGTACTC 57.397 34.615 14.87 14.87 31.32 2.59
3487 3619 7.732025 TCTGTCAAAAGTAAATGGAGTACTCA 58.268 34.615 23.91 10.85 31.32 3.41
3488 3620 8.208224 TCTGTCAAAAGTAAATGGAGTACTCAA 58.792 33.333 23.91 14.25 31.32 3.02
3489 3621 8.378172 TGTCAAAAGTAAATGGAGTACTCAAG 57.622 34.615 23.91 0.00 31.32 3.02
3490 3622 7.990886 TGTCAAAAGTAAATGGAGTACTCAAGT 59.009 33.333 23.91 10.03 31.32 3.16
3532 3664 9.734620 TTGAGAATTATATGCAATGCAAGTAAC 57.265 29.630 13.45 4.12 43.62 2.50
3551 3683 9.086336 CAAGTAACGAAATGGCATTTAATCAAT 57.914 29.630 24.39 10.82 31.47 2.57
3597 3729 6.610075 AATAAGATTGGGCATTTGTCTGTT 57.390 33.333 0.00 0.00 0.00 3.16
3661 3793 3.814504 AAACAATGGACCCATCACTCT 57.185 42.857 1.48 0.00 35.31 3.24
3896 4028 7.403421 CAACGAACAAAACAGTTCACACTATA 58.597 34.615 7.49 0.00 46.32 1.31
3916 4048 7.281774 CACTATATGTGTTTGATCTTTCTGCCT 59.718 37.037 0.00 0.00 41.53 4.75
4065 4197 3.891400 CAATGTGGCGGCCATCGG 61.891 66.667 26.68 11.49 39.69 4.18
4092 4224 4.322049 CGGAGGTACCCATTCATCATAGTC 60.322 50.000 8.74 0.00 34.64 2.59
4116 4248 6.810182 TCGCTAGGTTTAAGTTACTGATGTTC 59.190 38.462 0.00 0.00 0.00 3.18
4134 4267 8.168790 TGATGTTCAGATGAAATGAGAAAACA 57.831 30.769 0.00 0.00 35.58 2.83
4148 4281 9.491675 AAATGAGAAAACAAAATATGTCATGCA 57.508 25.926 0.00 0.00 42.99 3.96
4326 4464 3.994392 TCGATGTGGCTTCTGAGTAAAAC 59.006 43.478 0.00 0.00 0.00 2.43
4352 4490 7.954835 TCAATTGATGGAATATGATTGGGTTC 58.045 34.615 3.38 0.00 0.00 3.62
4354 4492 8.426489 CAATTGATGGAATATGATTGGGTTCTT 58.574 33.333 0.00 0.00 0.00 2.52
4406 4545 5.270083 CACGAACTATGTGCTTTCAAAACA 58.730 37.500 0.00 0.00 0.00 2.83
4410 4549 6.417635 CGAACTATGTGCTTTCAAAACATTGT 59.582 34.615 0.00 0.00 40.39 2.71
4416 4555 5.049167 GTGCTTTCAAAACATTGTCATGGA 58.951 37.500 0.00 0.00 34.27 3.41
4419 4558 6.766944 TGCTTTCAAAACATTGTCATGGATTT 59.233 30.769 0.00 0.00 34.27 2.17
4436 4575 0.179032 TTTTTGTCCAGCTCCGCTCA 60.179 50.000 0.00 0.00 36.40 4.26
4448 4588 4.923942 CGCTCATCCGGCATGGCT 62.924 66.667 18.09 0.00 37.80 4.75
4449 4589 2.427320 GCTCATCCGGCATGGCTA 59.573 61.111 18.09 5.65 37.80 3.93
4450 4590 1.963338 GCTCATCCGGCATGGCTAC 60.963 63.158 18.09 0.00 37.80 3.58
4451 4591 1.665916 CTCATCCGGCATGGCTACG 60.666 63.158 18.09 4.66 37.80 3.51
4456 4596 3.333414 CGGCATGGCTACGGAATG 58.667 61.111 18.09 0.00 0.00 2.67
4509 4666 2.628657 GCCTCCTTCCACTGTACGATAT 59.371 50.000 0.00 0.00 0.00 1.63
4511 4668 4.082679 GCCTCCTTCCACTGTACGATATAG 60.083 50.000 0.00 0.00 0.00 1.31
4517 4674 8.195436 TCCTTCCACTGTACGATATAGAAAAAG 58.805 37.037 0.00 0.00 0.00 2.27
4571 4729 9.956720 AAAAGTGTGATATGAAAAAGAGACAAG 57.043 29.630 0.00 0.00 0.00 3.16
4612 4822 5.005012 CGCGTAACCAAGAGATCGAAATTTA 59.995 40.000 0.00 0.00 0.00 1.40
4638 4848 9.777297 ATGAACAATTTTATAACCTGCAGTTTT 57.223 25.926 13.81 7.98 40.05 2.43
4639 4849 9.606631 TGAACAATTTTATAACCTGCAGTTTTT 57.393 25.926 13.81 2.25 40.05 1.94
4645 4855 8.874744 TTTTATAACCTGCAGTTTTTAACCAC 57.125 30.769 13.81 0.00 40.05 4.16
4646 4856 7.584122 TTATAACCTGCAGTTTTTAACCACA 57.416 32.000 13.81 0.00 40.05 4.17
4647 4857 6.664428 ATAACCTGCAGTTTTTAACCACAT 57.336 33.333 13.81 0.00 40.05 3.21
4655 4865 5.276820 GCAGTTTTTAACCACATTCTGCAAC 60.277 40.000 0.00 0.00 43.99 4.17
4659 4869 7.277760 AGTTTTTAACCACATTCTGCAACTTTC 59.722 33.333 0.00 0.00 0.00 2.62
4678 4888 6.545508 ACTTTCAAAAGTTCATTTTTGCAGC 58.454 32.000 2.30 0.00 46.52 5.25
4679 4889 6.149142 ACTTTCAAAAGTTCATTTTTGCAGCA 59.851 30.769 2.30 0.00 46.52 4.41
4680 4890 5.721876 TCAAAAGTTCATTTTTGCAGCAG 57.278 34.783 0.00 0.00 44.04 4.24
4681 4891 4.034279 TCAAAAGTTCATTTTTGCAGCAGC 59.966 37.500 0.00 0.00 44.04 5.25
4682 4892 1.774639 AGTTCATTTTTGCAGCAGCG 58.225 45.000 0.00 0.00 46.23 5.18
4683 4893 0.162294 GTTCATTTTTGCAGCAGCGC 59.838 50.000 0.00 0.00 46.23 5.92
4729 4966 0.250513 GTTGGAGTAGGCTGTGAGGG 59.749 60.000 0.00 0.00 0.00 4.30
4932 5198 1.153353 CAACGTTCACGCCACCTTAT 58.847 50.000 0.00 0.00 44.43 1.73
4933 5199 1.533731 CAACGTTCACGCCACCTTATT 59.466 47.619 0.00 0.00 44.43 1.40
4944 5211 2.305607 ACCTTATTGCCCCCGCTCA 61.306 57.895 0.00 0.00 35.36 4.26
5015 5282 2.503895 ATTTAAGCTGGTCTGCTGCT 57.496 45.000 0.00 0.00 43.24 4.24
5024 5291 2.433838 TCTGCTGCTTGCTCGCTC 60.434 61.111 0.00 0.00 43.37 5.03
5044 5311 1.450025 GGCGAGGTGGGACTAAAAAG 58.550 55.000 0.00 0.00 0.00 2.27
5133 5434 3.267483 GCCCGTGAAGCTAATAAGTGAA 58.733 45.455 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.471904 AGCCGACATCTTCTCAACATTA 57.528 40.909 0.00 0.00 0.00 1.90
3 4 5.791336 ATATAGCCGACATCTTCTCAACA 57.209 39.130 0.00 0.00 0.00 3.33
5 6 5.240844 TCGAATATAGCCGACATCTTCTCAA 59.759 40.000 0.00 0.00 0.00 3.02
6 7 4.760204 TCGAATATAGCCGACATCTTCTCA 59.240 41.667 0.00 0.00 0.00 3.27
7 8 5.298197 TCGAATATAGCCGACATCTTCTC 57.702 43.478 0.00 0.00 0.00 2.87
8 9 5.650266 AGATCGAATATAGCCGACATCTTCT 59.350 40.000 0.00 0.00 37.64 2.85
10 11 5.650266 AGAGATCGAATATAGCCGACATCTT 59.350 40.000 0.00 0.00 37.64 2.40
11 12 5.189928 AGAGATCGAATATAGCCGACATCT 58.810 41.667 0.00 5.79 37.64 2.90
13 14 4.336993 GGAGAGATCGAATATAGCCGACAT 59.663 45.833 0.00 0.00 37.64 3.06
15 16 3.690139 TGGAGAGATCGAATATAGCCGAC 59.310 47.826 0.00 0.00 37.64 4.79
16 17 3.951663 TGGAGAGATCGAATATAGCCGA 58.048 45.455 0.00 2.38 39.25 5.54
17 18 4.336713 TGATGGAGAGATCGAATATAGCCG 59.663 45.833 0.00 0.00 0.00 5.52
18 19 5.843673 TGATGGAGAGATCGAATATAGCC 57.156 43.478 0.00 0.00 0.00 3.93
20 21 7.597386 TGTGTTGATGGAGAGATCGAATATAG 58.403 38.462 0.00 0.00 0.00 1.31
21 22 7.524717 TGTGTTGATGGAGAGATCGAATATA 57.475 36.000 0.00 0.00 0.00 0.86
22 23 6.410942 TGTGTTGATGGAGAGATCGAATAT 57.589 37.500 0.00 0.00 0.00 1.28
25 26 4.535526 TTGTGTTGATGGAGAGATCGAA 57.464 40.909 0.00 0.00 0.00 3.71
26 27 4.743057 ATTGTGTTGATGGAGAGATCGA 57.257 40.909 0.00 0.00 0.00 3.59
28 29 7.930325 TCTTCATATTGTGTTGATGGAGAGATC 59.070 37.037 0.00 0.00 31.51 2.75
29 30 7.799081 TCTTCATATTGTGTTGATGGAGAGAT 58.201 34.615 0.00 0.00 31.51 2.75
30 31 7.186570 TCTTCATATTGTGTTGATGGAGAGA 57.813 36.000 0.00 0.00 31.51 3.10
31 32 7.551974 AGTTCTTCATATTGTGTTGATGGAGAG 59.448 37.037 0.00 0.00 36.72 3.20
32 33 7.397221 AGTTCTTCATATTGTGTTGATGGAGA 58.603 34.615 0.00 0.00 34.10 3.71
33 34 7.621428 AGTTCTTCATATTGTGTTGATGGAG 57.379 36.000 0.00 0.00 0.00 3.86
34 35 8.321353 AGTAGTTCTTCATATTGTGTTGATGGA 58.679 33.333 0.00 0.00 0.00 3.41
37 38 9.725019 TTGAGTAGTTCTTCATATTGTGTTGAT 57.275 29.630 0.00 0.00 0.00 2.57
38 39 9.208022 CTTGAGTAGTTCTTCATATTGTGTTGA 57.792 33.333 0.00 0.00 0.00 3.18
39 40 9.208022 TCTTGAGTAGTTCTTCATATTGTGTTG 57.792 33.333 0.00 0.00 0.00 3.33
40 41 9.950496 ATCTTGAGTAGTTCTTCATATTGTGTT 57.050 29.630 0.00 0.00 0.00 3.32
47 48 9.004717 CCTCGATATCTTGAGTAGTTCTTCATA 57.995 37.037 0.34 0.00 31.72 2.15
48 49 7.721842 TCCTCGATATCTTGAGTAGTTCTTCAT 59.278 37.037 0.34 0.00 31.72 2.57
50 51 7.499321 TCCTCGATATCTTGAGTAGTTCTTC 57.501 40.000 0.34 0.00 31.72 2.87
51 52 9.747898 ATATCCTCGATATCTTGAGTAGTTCTT 57.252 33.333 0.34 0.00 30.35 2.52
68 69 9.238368 TGTGTACAATCATGTATATATCCTCGA 57.762 33.333 0.00 0.00 43.60 4.04
70 71 9.290483 CGTGTGTACAATCATGTATATATCCTC 57.710 37.037 0.00 0.00 43.60 3.71
71 72 8.251026 CCGTGTGTACAATCATGTATATATCCT 58.749 37.037 0.00 0.00 43.60 3.24
72 73 8.248253 TCCGTGTGTACAATCATGTATATATCC 58.752 37.037 0.00 0.00 43.60 2.59
73 74 9.634163 TTCCGTGTGTACAATCATGTATATATC 57.366 33.333 0.00 0.00 43.60 1.63
75 76 8.414778 TGTTCCGTGTGTACAATCATGTATATA 58.585 33.333 0.00 0.00 43.60 0.86
76 77 7.269316 TGTTCCGTGTGTACAATCATGTATAT 58.731 34.615 0.00 0.00 43.60 0.86
77 78 6.631962 TGTTCCGTGTGTACAATCATGTATA 58.368 36.000 0.00 0.00 43.60 1.47
78 79 5.483811 TGTTCCGTGTGTACAATCATGTAT 58.516 37.500 0.00 0.00 43.60 2.29
80 81 3.734463 TGTTCCGTGTGTACAATCATGT 58.266 40.909 0.00 0.00 43.74 3.21
81 82 4.740741 TTGTTCCGTGTGTACAATCATG 57.259 40.909 0.00 0.00 0.00 3.07
83 84 5.352846 CCATATTGTTCCGTGTGTACAATCA 59.647 40.000 0.00 0.00 40.56 2.57
85 86 5.250200 ACCATATTGTTCCGTGTGTACAAT 58.750 37.500 0.00 0.00 43.02 2.71
86 87 4.643463 ACCATATTGTTCCGTGTGTACAA 58.357 39.130 0.00 0.00 36.35 2.41
87 88 4.274602 ACCATATTGTTCCGTGTGTACA 57.725 40.909 0.00 0.00 0.00 2.90
89 90 4.467082 ACCTACCATATTGTTCCGTGTGTA 59.533 41.667 0.00 0.00 0.00 2.90
91 92 3.869065 ACCTACCATATTGTTCCGTGTG 58.131 45.455 0.00 0.00 0.00 3.82
92 93 4.563140 AACCTACCATATTGTTCCGTGT 57.437 40.909 0.00 0.00 0.00 4.49
93 94 6.053005 ACATAACCTACCATATTGTTCCGTG 58.947 40.000 0.00 0.00 0.00 4.94
94 95 6.243216 ACATAACCTACCATATTGTTCCGT 57.757 37.500 0.00 0.00 0.00 4.69
95 96 8.842358 ATAACATAACCTACCATATTGTTCCG 57.158 34.615 0.00 0.00 0.00 4.30
112 113 9.542462 CCTCCGTTTCTTCTTCATATAACATAA 57.458 33.333 0.00 0.00 0.00 1.90
113 114 8.920174 TCCTCCGTTTCTTCTTCATATAACATA 58.080 33.333 0.00 0.00 0.00 2.29
114 115 7.792032 TCCTCCGTTTCTTCTTCATATAACAT 58.208 34.615 0.00 0.00 0.00 2.71
115 116 7.177832 TCCTCCGTTTCTTCTTCATATAACA 57.822 36.000 0.00 0.00 0.00 2.41
116 117 8.488651 TTTCCTCCGTTTCTTCTTCATATAAC 57.511 34.615 0.00 0.00 0.00 1.89
118 119 9.681062 AAATTTCCTCCGTTTCTTCTTCATATA 57.319 29.630 0.00 0.00 0.00 0.86
120 121 7.663905 TCAAATTTCCTCCGTTTCTTCTTCATA 59.336 33.333 0.00 0.00 0.00 2.15
121 122 6.490040 TCAAATTTCCTCCGTTTCTTCTTCAT 59.510 34.615 0.00 0.00 0.00 2.57
122 123 5.825679 TCAAATTTCCTCCGTTTCTTCTTCA 59.174 36.000 0.00 0.00 0.00 3.02
123 124 6.313744 TCAAATTTCCTCCGTTTCTTCTTC 57.686 37.500 0.00 0.00 0.00 2.87
124 125 6.294731 CCATCAAATTTCCTCCGTTTCTTCTT 60.295 38.462 0.00 0.00 0.00 2.52
125 126 5.183904 CCATCAAATTTCCTCCGTTTCTTCT 59.816 40.000 0.00 0.00 0.00 2.85
127 128 4.321974 GCCATCAAATTTCCTCCGTTTCTT 60.322 41.667 0.00 0.00 0.00 2.52
128 129 3.193479 GCCATCAAATTTCCTCCGTTTCT 59.807 43.478 0.00 0.00 0.00 2.52
129 130 3.056891 TGCCATCAAATTTCCTCCGTTTC 60.057 43.478 0.00 0.00 0.00 2.78
130 131 2.896685 TGCCATCAAATTTCCTCCGTTT 59.103 40.909 0.00 0.00 0.00 3.60
131 132 2.524306 TGCCATCAAATTTCCTCCGTT 58.476 42.857 0.00 0.00 0.00 4.44
132 133 2.214376 TGCCATCAAATTTCCTCCGT 57.786 45.000 0.00 0.00 0.00 4.69
133 134 3.806625 AATGCCATCAAATTTCCTCCG 57.193 42.857 0.00 0.00 0.00 4.63
134 135 5.987347 CACATAATGCCATCAAATTTCCTCC 59.013 40.000 0.00 0.00 0.00 4.30
135 136 5.987347 CCACATAATGCCATCAAATTTCCTC 59.013 40.000 0.00 0.00 0.00 3.71
136 137 5.163280 CCCACATAATGCCATCAAATTTCCT 60.163 40.000 0.00 0.00 0.00 3.36
137 138 5.058490 CCCACATAATGCCATCAAATTTCC 58.942 41.667 0.00 0.00 0.00 3.13
138 139 5.673514 ACCCACATAATGCCATCAAATTTC 58.326 37.500 0.00 0.00 0.00 2.17
139 140 5.697082 ACCCACATAATGCCATCAAATTT 57.303 34.783 0.00 0.00 0.00 1.82
140 141 6.999705 ATACCCACATAATGCCATCAAATT 57.000 33.333 0.00 0.00 0.00 1.82
141 142 7.894897 TCATATACCCACATAATGCCATCAAAT 59.105 33.333 0.00 0.00 0.00 2.32
142 143 7.237255 TCATATACCCACATAATGCCATCAAA 58.763 34.615 0.00 0.00 0.00 2.69
143 144 6.788218 TCATATACCCACATAATGCCATCAA 58.212 36.000 0.00 0.00 0.00 2.57
144 145 6.385766 TCATATACCCACATAATGCCATCA 57.614 37.500 0.00 0.00 0.00 3.07
146 147 7.779798 GGTTATCATATACCCACATAATGCCAT 59.220 37.037 0.00 0.00 0.00 4.40
147 148 7.116075 GGTTATCATATACCCACATAATGCCA 58.884 38.462 0.00 0.00 0.00 4.92
148 149 7.067008 GTGGTTATCATATACCCACATAATGCC 59.933 40.741 8.33 0.00 43.96 4.40
150 151 9.166173 CAGTGGTTATCATATACCCACATAATG 57.834 37.037 13.92 2.67 46.34 1.90
151 152 8.890472 ACAGTGGTTATCATATACCCACATAAT 58.110 33.333 13.92 0.00 46.34 1.28
152 153 8.270137 ACAGTGGTTATCATATACCCACATAA 57.730 34.615 13.92 0.00 46.34 1.90
153 154 7.865530 ACAGTGGTTATCATATACCCACATA 57.134 36.000 13.92 0.00 46.34 2.29
154 155 6.763715 ACAGTGGTTATCATATACCCACAT 57.236 37.500 13.92 1.95 46.34 3.21
156 157 9.216117 GAATAACAGTGGTTATCATATACCCAC 57.784 37.037 5.71 5.71 46.79 4.61
157 158 8.939932 TGAATAACAGTGGTTATCATATACCCA 58.060 33.333 0.00 0.00 46.79 4.51
158 159 9.959721 ATGAATAACAGTGGTTATCATATACCC 57.040 33.333 6.60 0.00 46.79 3.69
164 165 9.770097 CTGTAGATGAATAACAGTGGTTATCAT 57.230 33.333 7.82 7.82 46.79 2.45
166 167 9.817809 TTCTGTAGATGAATAACAGTGGTTATC 57.182 33.333 0.00 0.00 46.79 1.75
169 170 7.907389 TCTTCTGTAGATGAATAACAGTGGTT 58.093 34.615 0.00 0.00 41.12 3.67
170 171 7.482169 TCTTCTGTAGATGAATAACAGTGGT 57.518 36.000 0.00 0.00 41.12 4.16
171 172 8.954950 AATCTTCTGTAGATGAATAACAGTGG 57.045 34.615 0.00 0.00 42.90 4.00
180 181 9.426534 TCATCCTAGAAATCTTCTGTAGATGAA 57.573 33.333 16.90 8.03 42.90 2.57
181 182 8.855110 GTCATCCTAGAAATCTTCTGTAGATGA 58.145 37.037 16.05 16.05 42.90 2.92
183 184 8.859090 CAGTCATCCTAGAAATCTTCTGTAGAT 58.141 37.037 0.00 0.00 45.70 1.98
184 185 7.836685 ACAGTCATCCTAGAAATCTTCTGTAGA 59.163 37.037 0.00 0.00 40.94 2.59
185 186 8.006298 ACAGTCATCCTAGAAATCTTCTGTAG 57.994 38.462 0.00 0.00 40.94 2.74
186 187 7.962995 ACAGTCATCCTAGAAATCTTCTGTA 57.037 36.000 0.00 0.00 40.94 2.74
187 188 6.865834 ACAGTCATCCTAGAAATCTTCTGT 57.134 37.500 0.00 0.00 40.94 3.41
188 189 7.605691 ACAAACAGTCATCCTAGAAATCTTCTG 59.394 37.037 0.00 0.00 40.94 3.02
189 190 7.684529 ACAAACAGTCATCCTAGAAATCTTCT 58.315 34.615 0.00 0.00 43.72 2.85
190 191 7.913674 ACAAACAGTCATCCTAGAAATCTTC 57.086 36.000 0.00 0.00 0.00 2.87
192 193 7.684529 AGAACAAACAGTCATCCTAGAAATCT 58.315 34.615 0.00 0.00 0.00 2.40
194 195 9.965902 ATAAGAACAAACAGTCATCCTAGAAAT 57.034 29.630 0.00 0.00 0.00 2.17
195 196 9.219603 CATAAGAACAAACAGTCATCCTAGAAA 57.780 33.333 0.00 0.00 0.00 2.52
196 197 7.824289 CCATAAGAACAAACAGTCATCCTAGAA 59.176 37.037 0.00 0.00 0.00 2.10
197 198 7.331026 CCATAAGAACAAACAGTCATCCTAGA 58.669 38.462 0.00 0.00 0.00 2.43
198 199 6.037610 GCCATAAGAACAAACAGTCATCCTAG 59.962 42.308 0.00 0.00 0.00 3.02
199 200 5.880332 GCCATAAGAACAAACAGTCATCCTA 59.120 40.000 0.00 0.00 0.00 2.94
201 202 4.437390 CGCCATAAGAACAAACAGTCATCC 60.437 45.833 0.00 0.00 0.00 3.51
202 203 4.154195 ACGCCATAAGAACAAACAGTCATC 59.846 41.667 0.00 0.00 0.00 2.92
203 204 4.072131 ACGCCATAAGAACAAACAGTCAT 58.928 39.130 0.00 0.00 0.00 3.06
204 205 3.472652 ACGCCATAAGAACAAACAGTCA 58.527 40.909 0.00 0.00 0.00 3.41
207 208 3.004315 ACCAACGCCATAAGAACAAACAG 59.996 43.478 0.00 0.00 0.00 3.16
208 209 2.952978 ACCAACGCCATAAGAACAAACA 59.047 40.909 0.00 0.00 0.00 2.83
209 210 3.561503 GACCAACGCCATAAGAACAAAC 58.438 45.455 0.00 0.00 0.00 2.93
210 211 2.554893 GGACCAACGCCATAAGAACAAA 59.445 45.455 0.00 0.00 0.00 2.83
211 212 2.156098 GGACCAACGCCATAAGAACAA 58.844 47.619 0.00 0.00 0.00 2.83
212 213 1.072489 TGGACCAACGCCATAAGAACA 59.928 47.619 0.00 0.00 0.00 3.18
213 214 1.737793 CTGGACCAACGCCATAAGAAC 59.262 52.381 0.00 0.00 34.33 3.01
214 215 1.948611 GCTGGACCAACGCCATAAGAA 60.949 52.381 0.00 0.00 34.33 2.52
215 216 0.392461 GCTGGACCAACGCCATAAGA 60.392 55.000 0.00 0.00 34.33 2.10
216 217 0.392998 AGCTGGACCAACGCCATAAG 60.393 55.000 2.19 0.00 34.33 1.73
217 218 0.676466 CAGCTGGACCAACGCCATAA 60.676 55.000 5.57 0.00 34.33 1.90
218 219 1.078497 CAGCTGGACCAACGCCATA 60.078 57.895 5.57 0.00 34.33 2.74
219 220 2.360350 CAGCTGGACCAACGCCAT 60.360 61.111 5.57 0.00 34.33 4.40
220 221 4.641645 CCAGCTGGACCAACGCCA 62.642 66.667 29.88 0.00 37.39 5.69
221 222 4.329545 TCCAGCTGGACCAACGCC 62.330 66.667 32.00 0.00 39.78 5.68
229 230 1.888436 CGTGCTAAGGTCCAGCTGGA 61.888 60.000 32.00 32.00 43.08 3.86
230 231 1.448540 CGTGCTAAGGTCCAGCTGG 60.449 63.158 27.87 27.87 39.83 4.85
231 232 0.737715 GTCGTGCTAAGGTCCAGCTG 60.738 60.000 6.78 6.78 39.83 4.24
232 233 1.185618 TGTCGTGCTAAGGTCCAGCT 61.186 55.000 3.08 0.00 39.83 4.24
233 234 0.320421 TTGTCGTGCTAAGGTCCAGC 60.320 55.000 0.00 0.00 39.56 4.85
237 238 2.067013 GGAAGTTGTCGTGCTAAGGTC 58.933 52.381 0.00 0.00 0.00 3.85
239 240 1.068474 CGGAAGTTGTCGTGCTAAGG 58.932 55.000 0.00 0.00 0.00 2.69
256 257 1.606885 ATTGCATCCTTTGTGGCCGG 61.607 55.000 0.00 0.00 35.26 6.13
258 259 0.609662 ACATTGCATCCTTTGTGGCC 59.390 50.000 0.00 0.00 35.26 5.36
260 261 2.094390 CCTCACATTGCATCCTTTGTGG 60.094 50.000 11.71 2.77 39.86 4.17
262 263 1.547372 GCCTCACATTGCATCCTTTGT 59.453 47.619 0.00 0.00 0.00 2.83
263 264 1.822990 AGCCTCACATTGCATCCTTTG 59.177 47.619 0.00 0.00 0.00 2.77
264 265 1.822990 CAGCCTCACATTGCATCCTTT 59.177 47.619 0.00 0.00 0.00 3.11
266 267 0.622136 TCAGCCTCACATTGCATCCT 59.378 50.000 0.00 0.00 0.00 3.24
278 279 1.227205 CATCGCCAGAGTCAGCCTC 60.227 63.158 0.00 0.00 40.80 4.70
283 284 0.103026 CGATTCCATCGCCAGAGTCA 59.897 55.000 0.00 0.00 46.55 3.41
299 300 1.336887 CCAAACACCGTCTCTGTCGAT 60.337 52.381 0.00 0.00 0.00 3.59
300 301 0.031585 CCAAACACCGTCTCTGTCGA 59.968 55.000 0.00 0.00 0.00 4.20
307 308 3.675228 CGTAATAGAGCCAAACACCGTCT 60.675 47.826 0.00 0.00 0.00 4.18
309 310 2.231964 TCGTAATAGAGCCAAACACCGT 59.768 45.455 0.00 0.00 0.00 4.83
386 387 9.886132 TTTTCGAATAAGGCTCTAGATTTACTT 57.114 29.630 0.00 0.00 0.00 2.24
416 417 6.207025 ACAGAAGTACAGAACTAGTGATCGTT 59.793 38.462 0.00 0.00 37.50 3.85
417 418 5.706369 ACAGAAGTACAGAACTAGTGATCGT 59.294 40.000 0.00 0.00 37.50 3.73
418 419 6.184580 ACAGAAGTACAGAACTAGTGATCG 57.815 41.667 0.00 0.00 37.50 3.69
420 421 7.085116 CGAAACAGAAGTACAGAACTAGTGAT 58.915 38.462 0.00 0.00 37.50 3.06
421 422 6.039047 ACGAAACAGAAGTACAGAACTAGTGA 59.961 38.462 0.00 0.00 37.50 3.41
423 424 6.388435 ACGAAACAGAAGTACAGAACTAGT 57.612 37.500 0.00 0.00 37.50 2.57
424 425 8.288208 TCTAACGAAACAGAAGTACAGAACTAG 58.712 37.037 0.00 0.00 37.50 2.57
426 427 7.035840 TCTAACGAAACAGAAGTACAGAACT 57.964 36.000 0.00 0.00 41.49 3.01
427 428 7.689953 TTCTAACGAAACAGAAGTACAGAAC 57.310 36.000 0.00 0.00 0.00 3.01
428 429 8.706492 TTTTCTAACGAAACAGAAGTACAGAA 57.294 30.769 0.00 0.00 38.77 3.02
430 431 7.064064 GCTTTTCTAACGAAACAGAAGTACAG 58.936 38.462 0.00 0.00 38.77 2.74
431 432 6.535865 TGCTTTTCTAACGAAACAGAAGTACA 59.464 34.615 0.00 0.00 38.77 2.90
432 433 6.940714 TGCTTTTCTAACGAAACAGAAGTAC 58.059 36.000 0.00 0.00 38.77 2.73
537 543 5.707764 CCGATCTAATCTGACATCTCTGGTA 59.292 44.000 0.00 0.00 0.00 3.25
567 573 1.284491 TGATTGGGTCCTGCAGCATTA 59.716 47.619 8.66 0.00 0.00 1.90
573 579 0.548031 GGATCTGATTGGGTCCTGCA 59.452 55.000 0.00 0.00 0.00 4.41
659 665 3.100671 ACAAAAGTTGGGTTGCTTGGTA 58.899 40.909 0.00 0.00 34.12 3.25
719 725 4.631247 AAGCTCGCAGCAGCACCA 62.631 61.111 16.20 0.00 45.56 4.17
720 726 3.797546 GAAGCTCGCAGCAGCACC 61.798 66.667 16.20 6.29 45.56 5.01
764 770 5.635120 CCATTTAGCTAGCTTTATTCCCCT 58.365 41.667 24.88 0.00 0.00 4.79
918 937 1.325904 GGACGAAGACAACGACGACG 61.326 60.000 5.58 5.58 45.75 5.12
919 938 0.040603 AGGACGAAGACAACGACGAC 60.041 55.000 0.00 0.00 34.70 4.34
920 939 0.236711 GAGGACGAAGACAACGACGA 59.763 55.000 0.00 0.00 34.70 4.20
921 940 0.728466 GGAGGACGAAGACAACGACG 60.728 60.000 0.00 0.00 34.70 5.12
922 941 3.104014 GGAGGACGAAGACAACGAC 57.896 57.895 0.00 0.00 34.70 4.34
995 1023 1.012086 CTCAATGGCGTCCATGTCTG 58.988 55.000 11.38 7.23 44.40 3.51
1058 1101 0.749649 CAGTATCCTCGAGCCAAGCT 59.250 55.000 6.99 0.00 43.88 3.74
1104 1147 2.186384 GACAGCAGCTCGGAGCAT 59.814 61.111 29.88 13.85 45.56 3.79
1237 1281 3.196463 CAGCAAAAGCAAACCATCAACA 58.804 40.909 0.00 0.00 0.00 3.33
1238 1282 3.197265 ACAGCAAAAGCAAACCATCAAC 58.803 40.909 0.00 0.00 0.00 3.18
1239 1283 3.540314 ACAGCAAAAGCAAACCATCAA 57.460 38.095 0.00 0.00 0.00 2.57
1240 1284 3.132646 AGAACAGCAAAAGCAAACCATCA 59.867 39.130 0.00 0.00 0.00 3.07
1241 1285 3.721035 AGAACAGCAAAAGCAAACCATC 58.279 40.909 0.00 0.00 0.00 3.51
1245 1289 3.062504 CACCAAGAACAGCAAAAGCAAAC 59.937 43.478 0.00 0.00 0.00 2.93
1371 1415 4.350368 TTGATCAGTCTGCACCTGTTTA 57.650 40.909 8.16 0.00 0.00 2.01
1374 1418 2.369860 TCTTTGATCAGTCTGCACCTGT 59.630 45.455 8.16 0.00 0.00 4.00
1385 1429 9.903682 ATTGAAATAGTGTTGTTCTTTGATCAG 57.096 29.630 0.00 0.00 0.00 2.90
1470 1514 6.182627 TGAACACCAAATATCATCAGAAGCT 58.817 36.000 0.00 0.00 0.00 3.74
1483 1527 8.514330 TGTAAACTAAGAACTGAACACCAAAT 57.486 30.769 0.00 0.00 0.00 2.32
1518 1562 8.730680 CCCGAAGAGAAATGAAAAGAAAATAGA 58.269 33.333 0.00 0.00 0.00 1.98
1526 1570 4.997395 TCTCACCCGAAGAGAAATGAAAAG 59.003 41.667 0.00 0.00 39.07 2.27
1542 1588 1.608283 GCCACTACACTGTTCTCACCC 60.608 57.143 0.00 0.00 0.00 4.61
1548 1594 2.290641 CCAAGTTGCCACTACACTGTTC 59.709 50.000 0.00 0.00 30.68 3.18
1573 1619 0.663153 ACCAGCGAGCACAAACTTTC 59.337 50.000 0.00 0.00 0.00 2.62
1587 1633 1.806247 GCCACCAAACTCAAAACCAGC 60.806 52.381 0.00 0.00 0.00 4.85
1614 1661 0.396435 TCCACCGAACAGCTGAACAT 59.604 50.000 23.35 3.00 0.00 2.71
1651 1698 5.635120 AGGAAGCATAAAGGAAGACAAACT 58.365 37.500 0.00 0.00 0.00 2.66
1755 1827 6.636454 ACAGAGGATAAAACTCATAACCCA 57.364 37.500 0.00 0.00 37.43 4.51
1928 2000 9.565090 TTCCCTTTTTAGGAACTTACTAAAGTC 57.435 33.333 6.35 0.00 45.37 3.01
2067 2145 7.834529 CAAACTTGCAGAAAAATACAGTTCAG 58.165 34.615 0.00 0.00 0.00 3.02
2186 2264 4.907034 CCGACCGCGATCACCGAG 62.907 72.222 8.23 0.00 41.76 4.63
2231 2309 0.951040 GGGACTTGAGTCGGTTGCTG 60.951 60.000 5.16 0.00 45.65 4.41
2240 2318 4.330250 CATCAAATGACTGGGACTTGAGT 58.670 43.478 0.00 0.00 30.10 3.41
2249 2327 5.458041 AAAGTTCACCATCAAATGACTGG 57.542 39.130 9.10 9.10 36.09 4.00
2321 2399 7.750229 TGAGCTTCTGAATTAGAACATTGTT 57.250 32.000 0.63 0.63 40.43 2.83
2323 2401 8.295288 AGTTTGAGCTTCTGAATTAGAACATTG 58.705 33.333 0.00 0.00 40.43 2.82
2324 2402 8.295288 CAGTTTGAGCTTCTGAATTAGAACATT 58.705 33.333 0.00 0.00 40.43 2.71
2325 2403 7.574592 GCAGTTTGAGCTTCTGAATTAGAACAT 60.575 37.037 11.41 0.00 40.43 2.71
2341 2419 2.257676 GCTGCCTGCAGTTTGAGC 59.742 61.111 19.45 8.99 45.24 4.26
2393 2471 8.784043 AGCTTGATCGAAGTAGTTTTGTTAATT 58.216 29.630 0.00 0.00 33.73 1.40
2422 2500 1.811266 CGTCAGCCTGCTTGCGTAT 60.811 57.895 0.00 0.00 36.02 3.06
2501 2579 0.036577 CTCTTCAGTGACCTGCAGGG 60.037 60.000 35.42 18.05 38.66 4.45
2528 2606 2.485426 GTGTCATTGCTACATGTGCTGT 59.515 45.455 9.11 1.07 42.13 4.40
2657 2735 2.811317 CGGAGAACGTGGAGCAGC 60.811 66.667 0.00 0.00 37.93 5.25
2664 2742 1.095600 TCTGATCCTCGGAGAACGTG 58.904 55.000 6.58 0.00 44.69 4.49
2673 2751 0.539051 AGGCAGGTTTCTGATCCTCG 59.461 55.000 0.00 0.00 43.49 4.63
2676 2754 0.620556 TCCAGGCAGGTTTCTGATCC 59.379 55.000 0.00 0.00 43.49 3.36
2811 2896 6.519679 TCTTGCTGAATTTTGCATGATACT 57.480 33.333 13.94 0.00 38.07 2.12
2842 2931 6.200286 GCATGAAACCAGCATAAATCAGATTG 59.800 38.462 0.00 0.00 0.00 2.67
2846 2935 5.001237 TGCATGAAACCAGCATAAATCAG 57.999 39.130 0.00 0.00 32.55 2.90
2852 2941 4.779696 TCTACATGCATGAAACCAGCATA 58.220 39.130 32.75 10.34 46.39 3.14
2854 2943 3.070476 TCTACATGCATGAAACCAGCA 57.930 42.857 32.75 4.90 43.14 4.41
2855 2944 5.756195 TTATCTACATGCATGAAACCAGC 57.244 39.130 32.75 0.00 0.00 4.85
2973 3064 2.178580 ACTCCTTCTCCTTCTGCTCAG 58.821 52.381 0.00 0.00 0.00 3.35
3155 3246 3.057245 CAGGTCGATCACTCTGAACTTGA 60.057 47.826 0.00 0.00 0.00 3.02
3200 3321 3.355378 CCACTGTTCCCTGCAATTATCA 58.645 45.455 0.00 0.00 0.00 2.15
3216 3348 1.059913 ACTCAAGGACCTTCCCACTG 58.940 55.000 2.91 0.00 37.19 3.66
3300 3432 1.524621 GTGGATGATCCGGTGCCTG 60.525 63.158 7.03 0.00 40.17 4.85
3306 3438 3.911698 TCGCGGTGGATGATCCGG 61.912 66.667 6.13 0.00 45.85 5.14
3373 3505 9.740710 AAATCAAAATATAGGCTATGGTAGGTC 57.259 33.333 17.24 0.00 0.00 3.85
3397 3529 7.189079 AGGGTGGTTTTAATTGAGTCAAAAA 57.811 32.000 10.14 4.15 0.00 1.94
3398 3530 6.800072 AGGGTGGTTTTAATTGAGTCAAAA 57.200 33.333 10.14 0.00 0.00 2.44
3399 3531 6.800072 AAGGGTGGTTTTAATTGAGTCAAA 57.200 33.333 10.14 0.00 0.00 2.69
3400 3532 6.800072 AAAGGGTGGTTTTAATTGAGTCAA 57.200 33.333 8.27 8.27 0.00 3.18
3401 3533 6.800072 AAAAGGGTGGTTTTAATTGAGTCA 57.200 33.333 0.00 0.00 0.00 3.41
3446 3578 5.913137 TGACAGAAGATTGTTGTTTGGTT 57.087 34.783 0.00 0.00 0.00 3.67
3465 3597 8.379457 ACTTGAGTACTCCATTTACTTTTGAC 57.621 34.615 20.11 0.00 29.58 3.18
3475 3607 9.823647 CTGTATCATTTACTTGAGTACTCCATT 57.176 33.333 20.11 6.25 0.00 3.16
3476 3608 8.982723 ACTGTATCATTTACTTGAGTACTCCAT 58.017 33.333 20.11 8.00 0.00 3.41
3477 3609 8.362464 ACTGTATCATTTACTTGAGTACTCCA 57.638 34.615 20.11 8.49 0.00 3.86
3581 3713 3.701542 TGTGTAAACAGACAAATGCCCAA 59.298 39.130 0.00 0.00 0.00 4.12
3597 3729 6.039270 CCCAAAGTCAGAAATCTGTTGTGTAA 59.961 38.462 10.06 0.00 44.12 2.41
3652 3784 1.182667 TGGGTACGACAGAGTGATGG 58.817 55.000 0.00 0.00 0.00 3.51
3808 3940 2.611722 GCTCACCCACTGAAGAAGACTC 60.612 54.545 0.00 0.00 0.00 3.36
3896 4028 5.796424 AAAGGCAGAAAGATCAAACACAT 57.204 34.783 0.00 0.00 0.00 3.21
4092 4224 6.588756 TGAACATCAGTAACTTAAACCTAGCG 59.411 38.462 0.00 0.00 0.00 4.26
4128 4261 9.749490 CTGAAATGCATGACATATTTTGTTTTC 57.251 29.630 0.00 0.00 39.18 2.29
4133 4266 6.237996 GCACCTGAAATGCATGACATATTTTG 60.238 38.462 0.00 0.00 42.88 2.44
4134 4267 5.813672 GCACCTGAAATGCATGACATATTTT 59.186 36.000 0.00 0.00 42.88 1.82
4148 4281 0.316204 GCAAGTGCAGCACCTGAAAT 59.684 50.000 25.61 2.50 41.59 2.17
4326 4464 7.534723 ACCCAATCATATTCCATCAATTGAG 57.465 36.000 14.54 6.16 0.00 3.02
4436 4575 2.842462 TCCGTAGCCATGCCGGAT 60.842 61.111 5.05 0.00 45.20 4.18
4441 4580 1.378531 TTGTCATTCCGTAGCCATGC 58.621 50.000 0.00 0.00 0.00 4.06
4446 4586 1.717194 TCGGTTTGTCATTCCGTAGC 58.283 50.000 13.38 0.00 43.94 3.58
4447 4587 4.390603 TCAAATCGGTTTGTCATTCCGTAG 59.609 41.667 20.07 0.00 44.03 3.51
4448 4588 4.316645 TCAAATCGGTTTGTCATTCCGTA 58.683 39.130 20.07 0.00 44.03 4.02
4449 4589 3.142951 TCAAATCGGTTTGTCATTCCGT 58.857 40.909 20.07 2.52 44.03 4.69
4450 4590 3.188460 ACTCAAATCGGTTTGTCATTCCG 59.812 43.478 20.07 9.14 44.03 4.30
4451 4591 4.766404 ACTCAAATCGGTTTGTCATTCC 57.234 40.909 20.07 0.00 44.03 3.01
4452 4592 8.568732 TTTTTACTCAAATCGGTTTGTCATTC 57.431 30.769 20.07 0.00 44.03 2.67
4475 4615 3.517602 GAAGGAGGCACAAAACGTTTTT 58.482 40.909 23.14 9.04 0.00 1.94
4480 4620 0.310854 GTGGAAGGAGGCACAAAACG 59.689 55.000 0.00 0.00 0.00 3.60
4489 4629 5.314529 TCTATATCGTACAGTGGAAGGAGG 58.685 45.833 0.00 0.00 0.00 4.30
4509 4666 9.104965 TCACATCTCGAAGTTTTTCTTTTTCTA 57.895 29.630 0.00 0.00 36.40 2.10
4511 4668 8.788409 ATCACATCTCGAAGTTTTTCTTTTTC 57.212 30.769 0.00 0.00 36.40 2.29
4531 4688 9.981114 ATATCACACTTTTATACGATGATCACA 57.019 29.630 0.00 0.00 0.00 3.58
4568 4726 3.855950 GCGATTGGAAATTCTCTTGCTTG 59.144 43.478 0.00 0.00 0.00 4.01
4571 4729 2.159517 ACGCGATTGGAAATTCTCTTGC 60.160 45.455 15.93 0.00 0.00 4.01
4612 4822 9.777297 AAAACTGCAGGTTATAAAATTGTTCAT 57.223 25.926 19.31 0.00 37.12 2.57
4622 4832 7.584122 TGTGGTTAAAAACTGCAGGTTATAA 57.416 32.000 19.31 8.67 37.12 0.98
4623 4833 7.768807 ATGTGGTTAAAAACTGCAGGTTATA 57.231 32.000 19.31 3.05 37.12 0.98
4624 4834 6.664428 ATGTGGTTAAAAACTGCAGGTTAT 57.336 33.333 19.31 5.36 37.12 1.89
4625 4835 6.322712 AGAATGTGGTTAAAAACTGCAGGTTA 59.677 34.615 19.31 9.90 37.12 2.85
4626 4836 5.128663 AGAATGTGGTTAAAAACTGCAGGTT 59.871 36.000 19.93 16.37 40.28 3.50
4627 4837 4.649218 AGAATGTGGTTAAAAACTGCAGGT 59.351 37.500 19.93 9.19 0.00 4.00
4629 4839 4.445385 GCAGAATGTGGTTAAAAACTGCAG 59.555 41.667 13.48 13.48 45.48 4.41
4631 4841 4.367450 TGCAGAATGTGGTTAAAAACTGC 58.633 39.130 0.00 0.00 46.07 4.40
4632 4842 6.042143 AGTTGCAGAATGTGGTTAAAAACTG 58.958 36.000 0.00 0.00 39.31 3.16
4634 4844 6.902224 AAGTTGCAGAATGTGGTTAAAAAC 57.098 33.333 0.00 0.00 39.31 2.43
4635 4845 7.099764 TGAAAGTTGCAGAATGTGGTTAAAAA 58.900 30.769 0.00 0.00 39.31 1.94
4636 4846 6.634805 TGAAAGTTGCAGAATGTGGTTAAAA 58.365 32.000 0.00 0.00 39.31 1.52
4637 4847 6.214191 TGAAAGTTGCAGAATGTGGTTAAA 57.786 33.333 0.00 0.00 39.31 1.52
4638 4848 5.843673 TGAAAGTTGCAGAATGTGGTTAA 57.156 34.783 0.00 0.00 39.31 2.01
4639 4849 5.843673 TTGAAAGTTGCAGAATGTGGTTA 57.156 34.783 0.00 0.00 39.31 2.85
4640 4850 4.734398 TTGAAAGTTGCAGAATGTGGTT 57.266 36.364 0.00 0.00 39.31 3.67
4641 4851 4.734398 TTTGAAAGTTGCAGAATGTGGT 57.266 36.364 0.00 0.00 39.31 4.16
4642 4852 5.111293 ACTTTTGAAAGTTGCAGAATGTGG 58.889 37.500 3.37 0.00 46.52 4.17
4655 4865 6.544622 TGCTGCAAAAATGAACTTTTGAAAG 58.455 32.000 11.85 9.21 45.25 2.62
4659 4869 4.276460 GCTGCTGCAAAAATGAACTTTTG 58.724 39.130 11.11 4.77 45.21 2.44
4665 4875 0.249363 TGCGCTGCTGCAAAAATGAA 60.249 45.000 16.29 0.00 43.02 2.57
4666 4876 1.363080 TGCGCTGCTGCAAAAATGA 59.637 47.368 16.29 0.00 43.02 2.57
4834 5072 4.452733 GCTAGGCGTCACGGGCTT 62.453 66.667 0.00 0.00 43.33 4.35
4880 5146 2.555547 GCCTGGTCCAGTTGTGCAC 61.556 63.158 17.85 10.75 0.00 4.57
4881 5147 2.203337 GCCTGGTCCAGTTGTGCA 60.203 61.111 17.85 0.00 0.00 4.57
4923 5189 2.833121 CGGGGGCAATAAGGTGGC 60.833 66.667 0.00 0.00 43.12 5.01
4932 5198 2.931105 TAACCTGAGCGGGGGCAA 60.931 61.111 0.00 0.00 36.97 4.52
4933 5199 3.712907 GTAACCTGAGCGGGGGCA 61.713 66.667 0.00 0.00 36.97 5.36
4975 5242 3.840890 AGCACTCTCTACAAACTCTCG 57.159 47.619 0.00 0.00 0.00 4.04
5024 5291 0.320946 TTTTTAGTCCCACCTCGCCG 60.321 55.000 0.00 0.00 0.00 6.46
5158 5459 4.095410 TGAGCAAAGGCACAATTATTCG 57.905 40.909 0.00 0.00 44.61 3.34
5198 5511 3.849563 TTTTATATCCTGGGACACCGG 57.150 47.619 0.00 0.00 43.21 5.28
5248 5576 8.976353 TGGCATTTCTTACATAACATATTTGGT 58.024 29.630 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.