Multiple sequence alignment - TraesCS7D01G489100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G489100 chr7D 100.000 4263 0 0 1 4263 598721991 598726253 0.000000e+00 7873.0
1 TraesCS7D01G489100 chr7D 84.802 908 77 22 882 1772 599045610 599046473 0.000000e+00 856.0
2 TraesCS7D01G489100 chr7D 88.906 640 58 10 2905 3541 599067186 599067815 0.000000e+00 776.0
3 TraesCS7D01G489100 chr7D 92.807 431 31 0 2481 2911 599066797 599067227 3.620000e-175 625.0
4 TraesCS7D01G489100 chr7D 92.737 179 11 2 2291 2469 599066563 599066739 1.520000e-64 257.0
5 TraesCS7D01G489100 chr7D 77.628 371 62 13 2553 2911 396389632 396389993 5.590000e-49 206.0
6 TraesCS7D01G489100 chr7D 90.000 100 6 3 3568 3663 137854804 137854705 4.470000e-25 126.0
7 TraesCS7D01G489100 chr7D 85.057 87 8 5 1980 2062 574759822 574759907 2.730000e-12 84.2
8 TraesCS7D01G489100 chr7D 92.857 42 3 0 2905 2946 598724860 598724901 1.280000e-05 62.1
9 TraesCS7D01G489100 chr7D 92.857 42 3 0 2870 2911 598724895 598724936 1.280000e-05 62.1
10 TraesCS7D01G489100 chr5D 96.511 3353 70 14 917 4263 446100520 446097209 0.000000e+00 5500.0
11 TraesCS7D01G489100 chr5D 92.857 42 3 0 2870 2911 446098554 446098513 1.280000e-05 62.1
12 TraesCS7D01G489100 chr5D 92.857 42 3 0 2905 2946 446098589 446098548 1.280000e-05 62.1
13 TraesCS7D01G489100 chr7A 90.990 1010 44 17 879 1859 691271215 691272206 0.000000e+00 1317.0
14 TraesCS7D01G489100 chr7A 90.090 666 45 5 2905 3568 691272866 691273512 0.000000e+00 845.0
15 TraesCS7D01G489100 chr7A 88.962 607 46 6 2964 3568 691286523 691287110 0.000000e+00 730.0
16 TraesCS7D01G489100 chr7A 90.766 444 38 1 2468 2911 691272467 691272907 1.320000e-164 590.0
17 TraesCS7D01G489100 chr7A 90.541 444 39 1 2468 2911 691277528 691277968 6.140000e-163 584.0
18 TraesCS7D01G489100 chr7A 89.333 450 27 13 3670 4107 691273497 691273937 2.900000e-151 545.0
19 TraesCS7D01G489100 chr7A 89.310 449 28 12 3670 4107 691287095 691287534 2.900000e-151 545.0
20 TraesCS7D01G489100 chr7A 93.220 177 11 1 2291 2467 691272242 691272417 4.230000e-65 259.0
21 TraesCS7D01G489100 chr7A 74.784 464 90 20 2304 2761 450004285 450004727 2.620000e-42 183.0
22 TraesCS7D01G489100 chr7A 95.455 88 4 0 2380 2467 691277391 691277478 1.600000e-29 141.0
23 TraesCS7D01G489100 chr7A 82.857 175 11 12 1688 1857 691277034 691277194 5.750000e-29 139.0
24 TraesCS7D01G489100 chr7B 93.245 903 25 18 893 1784 678337187 678338064 0.000000e+00 1297.0
25 TraesCS7D01G489100 chr7B 91.106 877 68 4 1 871 215969986 215970858 0.000000e+00 1179.0
26 TraesCS7D01G489100 chr7B 87.461 638 66 10 2909 3541 678338874 678339502 0.000000e+00 723.0
27 TraesCS7D01G489100 chr7B 93.409 440 29 0 2472 2911 678338472 678338911 0.000000e+00 652.0
28 TraesCS7D01G489100 chr7B 77.898 371 63 11 2553 2911 399788847 399789210 3.340000e-51 213.0
29 TraesCS7D01G489100 chr7B 80.124 161 30 2 2565 2725 399797848 399798006 7.490000e-23 119.0
30 TraesCS7D01G489100 chr7B 91.935 62 4 1 1810 1870 678338120 678338181 7.590000e-13 86.1
31 TraesCS7D01G489100 chr4B 92.308 871 61 4 2 871 76567459 76566594 0.000000e+00 1232.0
32 TraesCS7D01G489100 chr3B 92.096 873 64 3 1 872 244978174 244977306 0.000000e+00 1225.0
33 TraesCS7D01G489100 chr3B 91.982 873 62 6 1 871 744217369 744218235 0.000000e+00 1218.0
34 TraesCS7D01G489100 chr3B 91.264 870 72 2 1 870 174452189 174453054 0.000000e+00 1182.0
35 TraesCS7D01G489100 chr3B 85.981 107 11 2 3565 3667 676971162 676971268 1.250000e-20 111.0
36 TraesCS7D01G489100 chr1D 91.963 871 66 2 1 871 424924089 424924955 0.000000e+00 1218.0
37 TraesCS7D01G489100 chr1D 89.908 109 7 3 3568 3672 412510268 412510160 2.070000e-28 137.0
38 TraesCS7D01G489100 chr1D 90.909 99 4 3 3570 3663 452830258 452830356 1.240000e-25 128.0
39 TraesCS7D01G489100 chr1B 91.734 871 66 4 1 871 433645914 433645050 0.000000e+00 1205.0
40 TraesCS7D01G489100 chr1B 91.628 872 66 4 1 871 635152920 635152055 0.000000e+00 1199.0
41 TraesCS7D01G489100 chr1B 78.977 176 29 7 1955 2123 398155118 398154944 3.480000e-21 113.0
42 TraesCS7D01G489100 chr3D 91.743 872 62 7 4 872 614469823 614468959 0.000000e+00 1203.0
43 TraesCS7D01G489100 chr3D 89.000 100 5 4 3568 3663 64866710 64866613 7.490000e-23 119.0
44 TraesCS7D01G489100 chr5A 80.503 318 41 8 1970 2282 493032941 493032640 1.540000e-54 224.0
45 TraesCS7D01G489100 chr5A 90.000 100 6 3 3568 3663 334005538 334005637 4.470000e-25 126.0
46 TraesCS7D01G489100 chr2B 76.689 296 56 11 1958 2245 436001094 436001384 7.380000e-33 152.0
47 TraesCS7D01G489100 chr5B 91.089 101 5 2 3567 3663 219059000 219059100 2.670000e-27 134.0
48 TraesCS7D01G489100 chr5B 85.981 107 11 3 3568 3670 541095705 541095599 1.250000e-20 111.0
49 TraesCS7D01G489100 chr4D 77.844 167 26 10 1889 2048 308375561 308375723 4.540000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G489100 chr7D 598721991 598726253 4262 False 2665.733333 7873 95.238000 1 4263 3 chr7D.!!$F4 4262
1 TraesCS7D01G489100 chr7D 599045610 599046473 863 False 856.000000 856 84.802000 882 1772 1 chr7D.!!$F3 890
2 TraesCS7D01G489100 chr7D 599066563 599067815 1252 False 552.666667 776 91.483333 2291 3541 3 chr7D.!!$F5 1250
3 TraesCS7D01G489100 chr5D 446097209 446100520 3311 True 1874.733333 5500 94.075000 917 4263 3 chr5D.!!$R1 3346
4 TraesCS7D01G489100 chr7A 691286523 691287534 1011 False 637.500000 730 89.136000 2964 4107 2 chr7A.!!$F3 1143
5 TraesCS7D01G489100 chr7A 691271215 691277968 6753 False 552.500000 1317 90.406500 879 4107 8 chr7A.!!$F2 3228
6 TraesCS7D01G489100 chr7B 215969986 215970858 872 False 1179.000000 1179 91.106000 1 871 1 chr7B.!!$F1 870
7 TraesCS7D01G489100 chr7B 678337187 678339502 2315 False 689.525000 1297 91.512500 893 3541 4 chr7B.!!$F4 2648
8 TraesCS7D01G489100 chr4B 76566594 76567459 865 True 1232.000000 1232 92.308000 2 871 1 chr4B.!!$R1 869
9 TraesCS7D01G489100 chr3B 244977306 244978174 868 True 1225.000000 1225 92.096000 1 872 1 chr3B.!!$R1 871
10 TraesCS7D01G489100 chr3B 744217369 744218235 866 False 1218.000000 1218 91.982000 1 871 1 chr3B.!!$F3 870
11 TraesCS7D01G489100 chr3B 174452189 174453054 865 False 1182.000000 1182 91.264000 1 870 1 chr3B.!!$F1 869
12 TraesCS7D01G489100 chr1D 424924089 424924955 866 False 1218.000000 1218 91.963000 1 871 1 chr1D.!!$F1 870
13 TraesCS7D01G489100 chr1B 433645050 433645914 864 True 1205.000000 1205 91.734000 1 871 1 chr1B.!!$R2 870
14 TraesCS7D01G489100 chr1B 635152055 635152920 865 True 1199.000000 1199 91.628000 1 871 1 chr1B.!!$R3 870
15 TraesCS7D01G489100 chr3D 614468959 614469823 864 True 1203.000000 1203 91.743000 4 872 1 chr3D.!!$R2 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 939 0.330267 GGCTGGCAAAAGGGGTAGTA 59.670 55.000 0.00 0.0 0.00 1.82 F
1933 2033 1.250476 GCTACTGCGTGCGAAAAATG 58.750 50.000 0.00 0.0 0.00 2.32 F
2077 2179 2.095161 CGCCAAAAGTTACCGCCAAATA 60.095 45.455 0.00 0.0 0.00 1.40 F
2413 2556 2.771372 TGCAGAGACCATATGTGCCTTA 59.229 45.455 11.46 0.0 36.18 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2201 2.288666 ACAGCAATGTTTCGTCAGTGT 58.711 42.857 0.0 0.0 36.09 3.55 R
3151 3347 1.485066 ACATTAACGCCCTGAGGTAGG 59.515 52.381 0.0 0.0 46.88 3.18 R
3155 3351 4.202010 CCATAAAACATTAACGCCCTGAGG 60.202 45.833 0.0 0.0 0.00 3.86 R
4070 4279 5.183713 TGGTCATTTCTCCATCAAATGTGAC 59.816 40.000 0.0 0.0 40.63 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.003173 CAGGAGTCTTCCCCGCCA 61.003 66.667 0.00 0.00 45.24 5.69
76 82 4.608774 TCGTCGGTGGTGAGGGGT 62.609 66.667 0.00 0.00 0.00 4.95
132 138 8.763984 TTCTCTCGTAGATTAGGATTTTAGGT 57.236 34.615 0.00 0.00 33.89 3.08
214 220 1.139095 CCTACTCCAACGAGGCGAC 59.861 63.158 0.00 0.00 40.77 5.19
240 246 4.320398 TCCTATGGTTGGGGATGGATTTA 58.680 43.478 0.00 0.00 0.00 1.40
258 264 8.690203 TGGATTTAGAAATCAGTCTGTTCAAA 57.310 30.769 15.11 2.66 45.10 2.69
266 272 8.133627 AGAAATCAGTCTGTTCAAACAAAGATG 58.866 33.333 0.00 0.00 38.66 2.90
448 454 2.030958 GGTTCGCGGTTCGTGGATT 61.031 57.895 6.13 0.00 37.97 3.01
562 572 4.212213 TCGTTCAACGGTAATGGTTTTG 57.788 40.909 10.69 0.00 42.81 2.44
563 573 3.626670 TCGTTCAACGGTAATGGTTTTGT 59.373 39.130 10.69 0.00 42.81 2.83
611 621 4.282950 CAAAGCTGCATATCAACGATGT 57.717 40.909 1.02 0.00 0.00 3.06
672 683 5.528043 TTTTTCTTTAATGGCTGCTGTGA 57.472 34.783 0.00 0.00 0.00 3.58
730 741 8.210946 TCAAGTTCAGAGGTTTCTTCAATCTTA 58.789 33.333 0.00 0.00 0.00 2.10
808 819 2.693074 TCTTTTCAGTTTTGCCAGGTCC 59.307 45.455 0.00 0.00 0.00 4.46
902 913 9.543783 GGTTCTTAACAGGAAATTCGTATATCT 57.456 33.333 0.00 0.00 0.00 1.98
924 935 4.218686 ACGGCTGGCAAAAGGGGT 62.219 61.111 1.08 0.00 0.00 4.95
925 936 2.034999 CGGCTGGCAAAAGGGGTA 59.965 61.111 1.08 0.00 0.00 3.69
926 937 2.046285 CGGCTGGCAAAAGGGGTAG 61.046 63.158 1.08 0.00 0.00 3.18
927 938 1.076727 GGCTGGCAAAAGGGGTAGT 59.923 57.895 0.00 0.00 0.00 2.73
928 939 0.330267 GGCTGGCAAAAGGGGTAGTA 59.670 55.000 0.00 0.00 0.00 1.82
931 942 2.492088 GCTGGCAAAAGGGGTAGTAAAG 59.508 50.000 0.00 0.00 0.00 1.85
935 946 5.209659 TGGCAAAAGGGGTAGTAAAGAAAA 58.790 37.500 0.00 0.00 0.00 2.29
1056 1075 3.812019 ATCTCGGAAGCGCGACGT 61.812 61.111 12.10 0.00 0.00 4.34
1899 1999 4.834357 AAAAGCAAACATCCAATTTGGC 57.166 36.364 10.76 0.00 37.47 4.52
1933 2033 1.250476 GCTACTGCGTGCGAAAAATG 58.750 50.000 0.00 0.00 0.00 2.32
2032 2134 5.299949 AGGTGAAAAGCTTAAGCATTTTGG 58.700 37.500 26.25 0.00 41.29 3.28
2077 2179 2.095161 CGCCAAAAGTTACCGCCAAATA 60.095 45.455 0.00 0.00 0.00 1.40
2090 2192 4.200874 CCGCCAAATATTACACCCAACTA 58.799 43.478 0.00 0.00 0.00 2.24
2118 2220 4.466567 TTACACTGACGAAACATTGCTG 57.533 40.909 0.00 0.00 0.00 4.41
2348 2491 9.836076 CGTTGAGATCTACGGTAATATCAATTA 57.164 33.333 9.71 1.81 40.41 1.40
2413 2556 2.771372 TGCAGAGACCATATGTGCCTTA 59.229 45.455 11.46 0.00 36.18 2.69
2597 2789 3.369175 GGATTCTTGGGAGGAGCATTTT 58.631 45.455 0.00 0.00 0.00 1.82
3151 3347 9.396022 TGATGATTAATTTCCTACTTGTTCCTC 57.604 33.333 0.00 0.00 0.00 3.71
3155 3351 9.327628 GATTAATTTCCTACTTGTTCCTCCTAC 57.672 37.037 0.00 0.00 0.00 3.18
3295 3493 1.480954 TCTCGTGTTCTTAGATGCCCC 59.519 52.381 0.00 0.00 0.00 5.80
3364 3563 8.726988 AGTATATGTTGTAAGTTTCAATTGCGT 58.273 29.630 0.00 0.00 0.00 5.24
3646 3847 1.527433 GGCAAACACCTGGCCTCTTC 61.527 60.000 3.32 0.00 44.32 2.87
3647 3848 0.823356 GCAAACACCTGGCCTCTTCA 60.823 55.000 3.32 0.00 0.00 3.02
3686 3887 6.710744 CAGAACAAAACAGTGTACCTTCCTAT 59.289 38.462 0.00 0.00 0.00 2.57
3973 4182 9.502091 TTTCTAACATATTTAGCACACTTCAGT 57.498 29.630 0.00 0.00 0.00 3.41
4070 4279 0.595588 TGCAAATAGCCACACCGTTG 59.404 50.000 0.00 0.00 44.83 4.10
4255 7491 6.103997 CGCCCTTTTTCTCACTACATTAGTA 58.896 40.000 0.00 0.00 37.23 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 119 7.198390 TGAACGACCTAAAATCCTAATCTACG 58.802 38.462 0.00 0.00 0.00 3.51
132 138 1.710013 GAAGCCAAGACGATGAACGA 58.290 50.000 0.00 0.00 45.77 3.85
168 174 3.551551 AGAAACTTTATTCAACGCACGC 58.448 40.909 0.00 0.00 0.00 5.34
169 175 4.314708 CGAAGAAACTTTATTCAACGCACG 59.685 41.667 9.07 0.00 0.00 5.34
170 176 4.611366 CCGAAGAAACTTTATTCAACGCAC 59.389 41.667 9.07 0.00 32.80 5.34
171 177 4.512198 TCCGAAGAAACTTTATTCAACGCA 59.488 37.500 9.07 0.00 32.80 5.24
214 220 1.418908 ATCCCCAACCATAGGAGCGG 61.419 60.000 0.00 0.00 31.94 5.52
217 223 1.819753 TCCATCCCCAACCATAGGAG 58.180 55.000 0.00 0.00 31.94 3.69
240 246 7.630242 TCTTTGTTTGAACAGACTGATTTCT 57.370 32.000 10.08 0.00 40.50 2.52
258 264 2.713967 GCCGCCATGCCATCTTTGT 61.714 57.895 0.00 0.00 0.00 2.83
262 268 4.260609 ATCGCCGCCATGCCATCT 62.261 61.111 0.00 0.00 0.00 2.90
318 324 1.137404 GAGCAAACGCCATCGCAAT 59.863 52.632 0.00 0.00 39.84 3.56
371 377 0.729116 GACCACAATCTGCATCCGTG 59.271 55.000 0.00 0.00 0.00 4.94
372 378 0.615331 AGACCACAATCTGCATCCGT 59.385 50.000 0.00 0.00 0.00 4.69
448 454 2.553028 GGAGGAGAAAACCACATCTGCA 60.553 50.000 0.00 0.00 36.58 4.41
534 544 4.570772 CCATTACCGTTGAACGAATCAGAT 59.429 41.667 20.47 1.66 46.05 2.90
605 615 1.647629 CTCGTAGCGGCTACATCGT 59.352 57.895 32.48 0.95 36.83 3.73
653 664 3.444742 CCATCACAGCAGCCATTAAAGAA 59.555 43.478 0.00 0.00 0.00 2.52
654 665 3.018856 CCATCACAGCAGCCATTAAAGA 58.981 45.455 0.00 0.00 0.00 2.52
659 670 1.180029 GAACCATCACAGCAGCCATT 58.820 50.000 0.00 0.00 0.00 3.16
671 682 1.204146 TACCTGCCTCTGGAACCATC 58.796 55.000 0.00 0.00 0.00 3.51
672 683 1.282157 GTTACCTGCCTCTGGAACCAT 59.718 52.381 0.00 0.00 0.00 3.55
696 707 1.867233 CCTCTGAACTTGACACCAACG 59.133 52.381 0.00 0.00 0.00 4.10
786 797 3.321968 GGACCTGGCAAAACTGAAAAGAT 59.678 43.478 0.00 0.00 0.00 2.40
808 819 7.404985 AGTATCATAGTACAAGTCACGTAACG 58.595 38.462 0.00 0.00 0.00 3.18
871 882 6.482973 ACGAATTTCCTGTTAAGAACCGTAAA 59.517 34.615 0.00 0.00 0.00 2.01
874 885 4.383173 ACGAATTTCCTGTTAAGAACCGT 58.617 39.130 0.00 0.00 0.00 4.83
875 886 6.657836 ATACGAATTTCCTGTTAAGAACCG 57.342 37.500 0.00 0.00 0.00 4.44
876 887 9.543783 AGATATACGAATTTCCTGTTAAGAACC 57.456 33.333 0.00 0.00 0.00 3.62
886 897 7.122353 AGCCGTGTATAGATATACGAATTTCCT 59.878 37.037 17.25 4.39 46.41 3.36
889 900 7.033791 CCAGCCGTGTATAGATATACGAATTT 58.966 38.462 17.25 1.36 46.41 1.82
902 913 1.680555 CCCTTTTGCCAGCCGTGTATA 60.681 52.381 0.00 0.00 0.00 1.47
903 914 0.965363 CCCTTTTGCCAGCCGTGTAT 60.965 55.000 0.00 0.00 0.00 2.29
924 935 9.793252 ACTACGCGAAGATATTTTTCTTTACTA 57.207 29.630 15.93 0.00 36.10 1.82
925 936 8.699283 ACTACGCGAAGATATTTTTCTTTACT 57.301 30.769 15.93 0.00 36.10 2.24
926 937 7.782055 CGACTACGCGAAGATATTTTTCTTTAC 59.218 37.037 15.93 0.00 36.10 2.01
927 938 7.824673 CGACTACGCGAAGATATTTTTCTTTA 58.175 34.615 15.93 0.00 36.10 1.85
928 939 6.693342 CGACTACGCGAAGATATTTTTCTTT 58.307 36.000 15.93 0.00 36.10 2.52
1607 1671 4.771590 TGATTTTGTAAGCAGAGGCAAG 57.228 40.909 0.00 0.00 44.61 4.01
1608 1672 5.945784 ACTATGATTTTGTAAGCAGAGGCAA 59.054 36.000 3.35 0.00 41.87 4.52
1887 1987 2.950309 CTCTGGAGAGCCAAATTGGATG 59.050 50.000 17.47 0.00 45.41 3.51
2004 2106 8.956533 AAATGCTTAAGCTTTTCACCTAAAAA 57.043 26.923 26.96 6.23 42.36 1.94
2044 2146 3.507786 ACTTTTGGCGTTCAACTTGTTC 58.492 40.909 0.00 0.00 34.67 3.18
2096 2198 4.334203 ACAGCAATGTTTCGTCAGTGTAAA 59.666 37.500 0.00 0.00 36.09 2.01
2099 2201 2.288666 ACAGCAATGTTTCGTCAGTGT 58.711 42.857 0.00 0.00 36.09 3.55
2118 2220 2.719046 CAGTTTTCATGCGAAACGGAAC 59.281 45.455 14.66 0.00 40.84 3.62
2413 2556 3.380142 GCAACAATCATTGTGACGGTTT 58.620 40.909 3.07 0.00 44.59 3.27
2733 2926 3.680490 TGGAAGCATTTTACGATGGACA 58.320 40.909 0.00 0.00 0.00 4.02
2790 2983 3.260475 TCACCGGTATGTCCAAATCAG 57.740 47.619 6.87 0.00 35.57 2.90
3151 3347 1.485066 ACATTAACGCCCTGAGGTAGG 59.515 52.381 0.00 0.00 46.88 3.18
3155 3351 4.202010 CCATAAAACATTAACGCCCTGAGG 60.202 45.833 0.00 0.00 0.00 3.86
3548 3749 6.801862 CGAAAAAGGAAGGTACAATGTTCATC 59.198 38.462 0.00 0.00 0.00 2.92
3646 3847 6.741992 TTTGTTCTGTGCATCCTAACTATG 57.258 37.500 0.00 0.00 0.00 2.23
3647 3848 6.714810 TGTTTTGTTCTGTGCATCCTAACTAT 59.285 34.615 0.00 0.00 0.00 2.12
4070 4279 5.183713 TGGTCATTTCTCCATCAAATGTGAC 59.816 40.000 0.00 0.00 40.63 3.67
4175 4384 7.479980 TCCAATAACTTCTGTTTTCAACACAG 58.520 34.615 0.00 0.00 42.74 3.66
4176 4385 7.397892 TCCAATAACTTCTGTTTTCAACACA 57.602 32.000 0.00 0.00 36.25 3.72
4178 4387 9.311916 CAAATCCAATAACTTCTGTTTTCAACA 57.688 29.630 0.00 0.00 39.52 3.33
4179 4388 9.528018 TCAAATCCAATAACTTCTGTTTTCAAC 57.472 29.630 0.00 0.00 37.59 3.18
4193 7429 9.598517 GTAAATTCCAGCAATCAAATCCAATAA 57.401 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.