Multiple sequence alignment - TraesCS7D01G488100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G488100 chr7D 100.000 2534 0 0 1 2534 598334590 598337123 0.000000e+00 4680.0
1 TraesCS7D01G488100 chr7D 82.751 916 112 26 5 907 598314615 598315497 0.000000e+00 774.0
2 TraesCS7D01G488100 chr7D 97.039 304 8 1 1913 2216 598353744 598354046 6.250000e-141 510.0
3 TraesCS7D01G488100 chr7D 79.970 674 83 33 868 1499 598308214 598308877 1.380000e-122 449.0
4 TraesCS7D01G488100 chr7D 86.190 210 26 2 1422 1631 598353301 598353507 9.120000e-55 224.0
5 TraesCS7D01G488100 chr7D 85.068 221 30 3 10 228 598313152 598313371 3.280000e-54 222.0
6 TraesCS7D01G488100 chr7D 100.000 28 0 0 1896 1923 11669621 11669648 5.000000e-03 52.8
7 TraesCS7D01G488100 chr7D 96.774 31 1 0 584 614 598294777 598294807 5.000000e-03 52.8
8 TraesCS7D01G488100 chr7A 90.476 1218 78 17 366 1582 690838908 690840088 0.000000e+00 1572.0
9 TraesCS7D01G488100 chr7A 89.228 984 89 7 649 1631 690721724 690722691 0.000000e+00 1214.0
10 TraesCS7D01G488100 chr7A 89.808 834 57 12 39 868 690823220 690824029 0.000000e+00 1044.0
11 TraesCS7D01G488100 chr7A 90.449 712 58 5 978 1684 690861057 690861763 0.000000e+00 929.0
12 TraesCS7D01G488100 chr7A 92.763 304 21 1 1913 2216 690861793 690862095 2.990000e-119 438.0
13 TraesCS7D01G488100 chr7A 85.545 422 48 8 868 1282 690776582 690776997 1.800000e-116 429.0
14 TraesCS7D01G488100 chr7A 84.543 427 52 8 868 1286 690676097 690676517 6.520000e-111 411.0
15 TraesCS7D01G488100 chr7A 86.111 324 33 8 518 838 690803881 690804195 3.120000e-89 339.0
16 TraesCS7D01G488100 chr7A 91.515 165 12 1 2093 2257 690726615 690726777 2.540000e-55 226.0
17 TraesCS7D01G488100 chr7A 83.182 220 37 0 1280 1499 690790503 690790722 4.270000e-48 202.0
18 TraesCS7D01G488100 chr7A 91.304 115 8 2 1985 2099 690722955 690723067 3.380000e-34 156.0
19 TraesCS7D01G488100 chr7A 90.566 106 8 1 2157 2262 690824254 690824357 3.400000e-29 139.0
20 TraesCS7D01G488100 chr7A 86.420 81 9 2 1714 1792 690840194 690840274 1.250000e-13 87.9
21 TraesCS7D01G488100 chr7A 91.379 58 5 0 485 542 690857554 690857611 2.090000e-11 80.5
22 TraesCS7D01G488100 chr7B 86.578 1423 147 20 173 1582 677355823 677357214 0.000000e+00 1530.0
23 TraesCS7D01G488100 chr7B 89.321 1208 96 11 7 1196 677218596 677217404 0.000000e+00 1485.0
24 TraesCS7D01G488100 chr7B 82.811 861 88 20 774 1631 677406526 677407329 0.000000e+00 715.0
25 TraesCS7D01G488100 chr7B 86.364 660 71 10 2 653 677239320 677239968 0.000000e+00 702.0
26 TraesCS7D01G488100 chr7B 82.570 786 94 22 3 776 677405511 677406265 0.000000e+00 652.0
27 TraesCS7D01G488100 chr7B 93.791 306 16 2 1913 2216 677407555 677407859 8.260000e-125 457.0
28 TraesCS7D01G488100 chr7B 80.241 663 83 29 874 1499 677400052 677400703 2.970000e-124 455.0
29 TraesCS7D01G488100 chr7B 82.846 513 52 11 260 768 677345553 677346033 6.480000e-116 427.0
30 TraesCS7D01G488100 chr7B 84.507 426 53 8 868 1286 677303878 677304297 2.350000e-110 409.0
31 TraesCS7D01G488100 chr7B 91.118 304 22 3 1913 2216 677242448 677242746 8.440000e-110 407.0
32 TraesCS7D01G488100 chr7B 85.119 336 45 3 951 1286 677188753 677189083 3.120000e-89 339.0
33 TraesCS7D01G488100 chr7B 79.250 400 61 19 1369 1757 677206101 677205713 2.500000e-65 259.0
34 TraesCS7D01G488100 chr7B 88.406 207 21 3 30 234 677220092 677219887 1.950000e-61 246.0
35 TraesCS7D01G488100 chr7B 85.526 228 29 3 2 229 677345333 677345556 4.210000e-58 235.0
36 TraesCS7D01G488100 chr7B 89.617 183 12 4 54 230 677334060 677334241 2.540000e-55 226.0
37 TraesCS7D01G488100 chr7B 84.188 234 29 5 3 234 677237263 677237490 1.180000e-53 220.0
38 TraesCS7D01G488100 chr7B 81.707 246 30 10 1921 2160 677358602 677358838 9.250000e-45 191.0
39 TraesCS7D01G488100 chr7B 89.000 100 9 2 2163 2262 677205223 677205126 3.420000e-24 122.0
40 TraesCS7D01G488100 chr3D 95.833 120 5 0 1798 1917 11463422 11463541 7.150000e-46 195.0
41 TraesCS7D01G488100 chr5D 98.039 102 1 1 1802 1903 440118528 440118428 2.590000e-40 176.0
42 TraesCS7D01G488100 chr2B 93.277 119 4 2 1802 1916 743741016 743740898 3.350000e-39 172.0
43 TraesCS7D01G488100 chr2B 90.984 122 7 1 1795 1916 779852703 779852820 7.250000e-36 161.0
44 TraesCS7D01G488100 chr4D 91.379 116 9 1 1802 1916 409462668 409462783 9.380000e-35 158.0
45 TraesCS7D01G488100 chr1B 91.525 118 4 2 1802 1919 637627086 637627197 9.380000e-35 158.0
46 TraesCS7D01G488100 chr4A 91.304 115 8 1 1802 1916 688239331 688239219 3.380000e-34 156.0
47 TraesCS7D01G488100 chr2D 90.164 122 8 1 1799 1920 576293426 576293543 3.380000e-34 156.0
48 TraesCS7D01G488100 chr4B 91.892 111 6 1 1801 1908 464223348 464223238 4.370000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G488100 chr7D 598334590 598337123 2533 False 4680.00 4680 100.000000 1 2534 1 chr7D.!!$F4 2533
1 TraesCS7D01G488100 chr7D 598313152 598315497 2345 False 498.00 774 83.909500 5 907 2 chr7D.!!$F5 902
2 TraesCS7D01G488100 chr7D 598308214 598308877 663 False 449.00 449 79.970000 868 1499 1 chr7D.!!$F3 631
3 TraesCS7D01G488100 chr7D 598353301 598354046 745 False 367.00 510 91.614500 1422 2216 2 chr7D.!!$F6 794
4 TraesCS7D01G488100 chr7A 690838908 690840274 1366 False 829.95 1572 88.448000 366 1792 2 chr7A.!!$F7 1426
5 TraesCS7D01G488100 chr7A 690823220 690824357 1137 False 591.50 1044 90.187000 39 2262 2 chr7A.!!$F6 2223
6 TraesCS7D01G488100 chr7A 690721724 690726777 5053 False 532.00 1214 90.682333 649 2257 3 chr7A.!!$F5 1608
7 TraesCS7D01G488100 chr7A 690857554 690862095 4541 False 482.50 929 91.530333 485 2216 3 chr7A.!!$F8 1731
8 TraesCS7D01G488100 chr7B 677217404 677220092 2688 True 865.50 1485 88.863500 7 1196 2 chr7B.!!$R2 1189
9 TraesCS7D01G488100 chr7B 677355823 677358838 3015 False 860.50 1530 84.142500 173 2160 2 chr7B.!!$F7 1987
10 TraesCS7D01G488100 chr7B 677405511 677407859 2348 False 608.00 715 86.390667 3 2216 3 chr7B.!!$F8 2213
11 TraesCS7D01G488100 chr7B 677400052 677400703 651 False 455.00 455 80.241000 874 1499 1 chr7B.!!$F4 625
12 TraesCS7D01G488100 chr7B 677237263 677242746 5483 False 443.00 702 87.223333 2 2216 3 chr7B.!!$F5 2214
13 TraesCS7D01G488100 chr7B 677345333 677346033 700 False 331.00 427 84.186000 2 768 2 chr7B.!!$F6 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 2709 0.111061 AAGCTTGTGGACATCTGGCA 59.889 50.0 0.0 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2380 15002 0.167908 GTGCGGATGTCGATGCAAAA 59.832 50.0 0.0 0.0 42.43 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 2225 4.415501 GTGCGCGCGTCTTGTCTG 62.416 66.667 32.35 0.00 0.00 3.51
27 2234 2.597520 GCGTCTTGTCTGTACCTCTTC 58.402 52.381 0.00 0.00 0.00 2.87
171 2382 0.741221 GACCTTGTGGGCATCTCGTC 60.741 60.000 0.00 0.00 42.34 4.20
255 2472 4.035792 ACTTGTAGTAAACGCACATGCAAA 59.964 37.500 4.49 0.00 42.21 3.68
320 2549 3.004171 GGGCATGTGTCGTGTTGTATTA 58.996 45.455 0.00 0.00 0.00 0.98
335 2564 6.885702 GTGTTGTATTATAACGCGCGTATATG 59.114 38.462 37.93 5.92 0.00 1.78
359 2588 5.748630 GGCCAAACTCTCTTTGTAACTTTTG 59.251 40.000 0.00 0.00 0.00 2.44
409 2642 1.818785 GAGCCAGCTCATCACCAGC 60.819 63.158 14.70 0.00 42.31 4.85
462 2709 0.111061 AAGCTTGTGGACATCTGGCA 59.889 50.000 0.00 0.00 0.00 4.92
464 2711 1.180029 GCTTGTGGACATCTGGCATT 58.820 50.000 0.00 0.00 0.00 3.56
482 2729 3.322369 CATTGTACTTGTCGGCTGTACA 58.678 45.455 17.78 17.78 42.92 2.90
490 2743 1.411246 TGTCGGCTGTACATCCATACC 59.589 52.381 15.72 1.14 0.00 2.73
506 2767 4.587262 TCCATACCTAGCATACGACAACAT 59.413 41.667 0.00 0.00 0.00 2.71
640 2924 5.973565 GCTGTGATATGAAGGCAATAACAAC 59.026 40.000 0.00 0.00 0.00 3.32
698 4208 3.068590 ACATTTTGGCTTCAAGTCACCAG 59.931 43.478 0.00 0.00 32.79 4.00
813 7743 4.695455 GTGACACAAGCATGTTACACCTAT 59.305 41.667 13.79 0.00 38.58 2.57
840 7770 5.652994 TGAAATATTTTTAGGCAAGGCGT 57.347 34.783 1.43 0.00 0.00 5.68
966 8678 2.482326 GCCACAGCAAGTACATCCC 58.518 57.895 0.00 0.00 39.53 3.85
992 8737 7.294473 GTCTCTTCTCAAGCAAAACAAGATAC 58.706 38.462 0.00 0.00 0.00 2.24
1236 9011 3.997397 TCCAGCGCGTGCAAGGTA 61.997 61.111 24.79 11.28 46.23 3.08
1266 9041 1.395826 GGAGGATCGTGAGGAGGTGG 61.396 65.000 0.00 0.00 34.37 4.61
1539 9319 5.067023 ACTTAGAAAGCAGGCATGATTAAGC 59.933 40.000 0.83 0.00 32.81 3.09
1582 9362 1.335051 GCTTTTGCGGACAGAAAGACC 60.335 52.381 4.02 0.00 33.35 3.85
1685 9495 5.900123 AGGTCCTATCAGTGTATAGTGCTTT 59.100 40.000 0.00 0.00 0.00 3.51
1686 9496 5.986135 GGTCCTATCAGTGTATAGTGCTTTG 59.014 44.000 0.00 0.00 0.00 2.77
1712 9798 5.926214 CTACTATAGCTAGTTGAGTGCGA 57.074 43.478 0.00 0.00 39.04 5.10
1750 9836 2.238144 TGATCAGCAGAGAGAAAAGGGG 59.762 50.000 0.00 0.00 0.00 4.79
1763 10747 0.639943 AAAGGGGGCCCGGAATTATT 59.360 50.000 17.79 0.41 41.95 1.40
1767 10753 1.491668 GGGGCCCGGAATTATTTGTT 58.508 50.000 17.79 0.00 0.00 2.83
1768 10754 1.138069 GGGGCCCGGAATTATTTGTTG 59.862 52.381 17.79 0.00 0.00 3.33
1785 10771 6.645700 TTTGTTGATCAGCAAAACTTTGTC 57.354 33.333 28.70 0.00 38.31 3.18
1803 10789 6.865205 ACTTTGTCGTGTCCAATAAGTAGTAC 59.135 38.462 0.00 0.00 0.00 2.73
1804 10790 6.579666 TTGTCGTGTCCAATAAGTAGTACT 57.420 37.500 0.00 0.00 0.00 2.73
1805 10791 6.187125 TGTCGTGTCCAATAAGTAGTACTC 57.813 41.667 2.58 0.00 0.00 2.59
1806 10792 5.124457 TGTCGTGTCCAATAAGTAGTACTCC 59.876 44.000 2.58 0.00 0.00 3.85
1807 10793 4.641989 TCGTGTCCAATAAGTAGTACTCCC 59.358 45.833 2.58 0.00 0.00 4.30
1808 10794 4.643784 CGTGTCCAATAAGTAGTACTCCCT 59.356 45.833 2.58 0.00 0.00 4.20
1809 10795 5.221009 CGTGTCCAATAAGTAGTACTCCCTC 60.221 48.000 2.58 0.00 0.00 4.30
1810 10796 5.068855 GTGTCCAATAAGTAGTACTCCCTCC 59.931 48.000 2.58 0.00 0.00 4.30
1811 10797 4.277921 GTCCAATAAGTAGTACTCCCTCCG 59.722 50.000 2.58 0.00 0.00 4.63
1812 10798 4.079558 TCCAATAAGTAGTACTCCCTCCGT 60.080 45.833 2.58 0.00 0.00 4.69
1813 10799 4.648307 CCAATAAGTAGTACTCCCTCCGTT 59.352 45.833 2.58 0.00 0.00 4.44
1814 10800 5.221204 CCAATAAGTAGTACTCCCTCCGTTC 60.221 48.000 2.58 0.00 0.00 3.95
1815 10801 2.433662 AGTAGTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
1816 10802 1.637553 AGTAGTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
1817 10803 2.042162 AGTAGTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
1818 10804 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1819 10805 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1820 10806 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1821 10807 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1822 10808 4.720273 AGTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
1823 10809 5.901276 AGTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
1824 10810 5.906772 ACTCCCTCCGTTCCAAAATATAT 57.093 39.130 0.00 0.00 0.00 0.86
1825 10811 5.621193 ACTCCCTCCGTTCCAAAATATATG 58.379 41.667 0.00 0.00 0.00 1.78
1826 10812 5.368523 ACTCCCTCCGTTCCAAAATATATGA 59.631 40.000 0.00 0.00 0.00 2.15
1827 10813 5.617252 TCCCTCCGTTCCAAAATATATGAC 58.383 41.667 0.00 0.00 0.00 3.06
1828 10814 4.760204 CCCTCCGTTCCAAAATATATGACC 59.240 45.833 0.00 0.00 0.00 4.02
1829 10815 4.760204 CCTCCGTTCCAAAATATATGACCC 59.240 45.833 0.00 0.00 0.00 4.46
1830 10816 5.373222 CTCCGTTCCAAAATATATGACCCA 58.627 41.667 0.00 0.00 0.00 4.51
1831 10817 5.756918 TCCGTTCCAAAATATATGACCCAA 58.243 37.500 0.00 0.00 0.00 4.12
1832 10818 5.591067 TCCGTTCCAAAATATATGACCCAAC 59.409 40.000 0.00 0.00 0.00 3.77
1833 10819 5.592688 CCGTTCCAAAATATATGACCCAACT 59.407 40.000 0.00 0.00 0.00 3.16
1834 10820 6.096282 CCGTTCCAAAATATATGACCCAACTT 59.904 38.462 0.00 0.00 0.00 2.66
1835 10821 7.363443 CCGTTCCAAAATATATGACCCAACTTT 60.363 37.037 0.00 0.00 0.00 2.66
1836 10822 7.487829 CGTTCCAAAATATATGACCCAACTTTG 59.512 37.037 0.00 0.00 0.00 2.77
1837 10823 8.311109 GTTCCAAAATATATGACCCAACTTTGT 58.689 33.333 0.00 0.00 0.00 2.83
1838 10824 9.535170 TTCCAAAATATATGACCCAACTTTGTA 57.465 29.630 0.00 0.00 0.00 2.41
1839 10825 8.962679 TCCAAAATATATGACCCAACTTTGTAC 58.037 33.333 0.00 0.00 0.00 2.90
1840 10826 8.966868 CCAAAATATATGACCCAACTTTGTACT 58.033 33.333 0.00 0.00 0.00 2.73
1848 10834 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
1849 10835 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
1850 10836 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
1863 10849 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
1864 10850 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
1865 10851 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
1866 10852 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
1867 10853 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
1868 10854 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
1869 10855 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
1870 10856 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
1871 10857 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1872 10858 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1873 10859 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1874 10860 5.838521 ACAAAGTTGGGTCATCTATTTTGGT 59.161 36.000 0.00 0.00 0.00 3.67
1875 10861 6.326323 ACAAAGTTGGGTCATCTATTTTGGTT 59.674 34.615 0.00 0.00 0.00 3.67
1876 10862 7.507616 ACAAAGTTGGGTCATCTATTTTGGTTA 59.492 33.333 0.00 0.00 0.00 2.85
1877 10863 7.703058 AAGTTGGGTCATCTATTTTGGTTAG 57.297 36.000 0.00 0.00 0.00 2.34
1878 10864 6.790319 AGTTGGGTCATCTATTTTGGTTAGT 58.210 36.000 0.00 0.00 0.00 2.24
1879 10865 7.924541 AGTTGGGTCATCTATTTTGGTTAGTA 58.075 34.615 0.00 0.00 0.00 1.82
1880 10866 7.827729 AGTTGGGTCATCTATTTTGGTTAGTAC 59.172 37.037 0.00 0.00 0.00 2.73
1881 10867 7.260387 TGGGTCATCTATTTTGGTTAGTACA 57.740 36.000 0.00 0.00 0.00 2.90
1882 10868 7.691213 TGGGTCATCTATTTTGGTTAGTACAA 58.309 34.615 0.00 0.00 0.00 2.41
1883 10869 8.164733 TGGGTCATCTATTTTGGTTAGTACAAA 58.835 33.333 0.00 0.00 36.15 2.83
1884 10870 8.674607 GGGTCATCTATTTTGGTTAGTACAAAG 58.325 37.037 0.00 0.00 38.84 2.77
1885 10871 9.227777 GGTCATCTATTTTGGTTAGTACAAAGT 57.772 33.333 0.00 0.00 38.84 2.66
1888 10874 9.840427 CATCTATTTTGGTTAGTACAAAGTTGG 57.160 33.333 0.00 0.00 38.84 3.77
1889 10875 8.398878 TCTATTTTGGTTAGTACAAAGTTGGG 57.601 34.615 0.00 0.00 38.84 4.12
1890 10876 8.000127 TCTATTTTGGTTAGTACAAAGTTGGGT 59.000 33.333 0.00 0.00 38.84 4.51
1891 10877 6.453926 TTTTGGTTAGTACAAAGTTGGGTC 57.546 37.500 0.00 0.00 38.84 4.46
1892 10878 4.774660 TGGTTAGTACAAAGTTGGGTCA 57.225 40.909 0.00 0.00 0.00 4.02
1893 10879 5.313280 TGGTTAGTACAAAGTTGGGTCAT 57.687 39.130 0.00 0.00 0.00 3.06
1894 10880 5.310451 TGGTTAGTACAAAGTTGGGTCATC 58.690 41.667 0.00 0.00 0.00 2.92
1895 10881 5.072600 TGGTTAGTACAAAGTTGGGTCATCT 59.927 40.000 0.00 0.00 0.00 2.90
1896 10882 6.270463 TGGTTAGTACAAAGTTGGGTCATCTA 59.730 38.462 0.00 0.00 0.00 1.98
1897 10883 7.037873 TGGTTAGTACAAAGTTGGGTCATCTAT 60.038 37.037 0.00 0.00 0.00 1.98
1898 10884 7.827729 GGTTAGTACAAAGTTGGGTCATCTATT 59.172 37.037 0.00 0.00 0.00 1.73
1899 10885 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
1900 10886 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1901 10887 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1902 10888 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1903 10889 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
1904 10890 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
1905 10891 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1906 10892 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1907 10893 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1908 10894 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1909 10895 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1910 10896 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1911 10897 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1961 10947 2.276868 GATCGTGCGTGCATGTGC 60.277 61.111 13.31 4.66 42.50 4.57
2062 11052 5.245075 TCAAAGGAAAAGTTCACAGGTGTTT 59.755 36.000 0.00 0.00 0.00 2.83
2063 11053 4.718940 AGGAAAAGTTCACAGGTGTTTG 57.281 40.909 0.00 0.00 0.00 2.93
2216 14838 4.965532 AGGGAAGAATGTAGCTAGTGACAT 59.034 41.667 0.00 5.98 37.91 3.06
2217 14839 6.040955 CAGGGAAGAATGTAGCTAGTGACATA 59.959 42.308 10.81 0.00 35.21 2.29
2275 14897 9.553064 TTGTACACATATATTCACATGCATACA 57.447 29.630 0.00 0.00 30.17 2.29
2276 14898 9.206870 TGTACACATATATTCACATGCATACAG 57.793 33.333 0.00 0.00 29.41 2.74
2277 14899 9.208022 GTACACATATATTCACATGCATACAGT 57.792 33.333 0.00 0.00 0.00 3.55
2279 14901 9.948964 ACACATATATTCACATGCATACAGTAT 57.051 29.630 0.00 0.00 0.00 2.12
2285 14907 6.603237 TTCACATGCATACAGTATTAGTGC 57.397 37.500 0.00 0.00 36.39 4.40
2286 14908 4.744631 TCACATGCATACAGTATTAGTGCG 59.255 41.667 0.00 0.00 38.58 5.34
2287 14909 3.494626 ACATGCATACAGTATTAGTGCGC 59.505 43.478 0.00 0.00 38.58 6.09
2288 14910 3.172229 TGCATACAGTATTAGTGCGCA 57.828 42.857 5.66 5.66 38.58 6.09
2289 14911 2.863740 TGCATACAGTATTAGTGCGCAC 59.136 45.455 32.79 32.79 38.58 5.34
2290 14912 2.863740 GCATACAGTATTAGTGCGCACA 59.136 45.455 39.21 22.69 0.00 4.57
2299 14921 3.649986 GTGCGCACACACAGGGAC 61.650 66.667 34.52 3.30 46.61 4.46
2300 14922 4.168291 TGCGCACACACAGGGACA 62.168 61.111 5.66 0.00 0.00 4.02
2301 14923 3.349006 GCGCACACACAGGGACAG 61.349 66.667 0.30 0.00 0.00 3.51
2302 14924 2.666190 CGCACACACAGGGACAGG 60.666 66.667 0.00 0.00 0.00 4.00
2303 14925 2.281761 GCACACACAGGGACAGGG 60.282 66.667 0.00 0.00 0.00 4.45
2304 14926 3.120086 GCACACACAGGGACAGGGT 62.120 63.158 0.00 0.00 0.00 4.34
2305 14927 1.071471 CACACACAGGGACAGGGTC 59.929 63.158 0.00 0.00 0.00 4.46
2315 14937 3.212450 GACAGGGTCCTTCGTTGTC 57.788 57.895 0.00 0.00 0.00 3.18
2316 14938 0.680061 GACAGGGTCCTTCGTTGTCT 59.320 55.000 0.00 0.00 36.21 3.41
2317 14939 0.393077 ACAGGGTCCTTCGTTGTCTG 59.607 55.000 0.00 0.00 0.00 3.51
2318 14940 0.393077 CAGGGTCCTTCGTTGTCTGT 59.607 55.000 0.00 0.00 0.00 3.41
2319 14941 0.680061 AGGGTCCTTCGTTGTCTGTC 59.320 55.000 0.00 0.00 0.00 3.51
2320 14942 0.680061 GGGTCCTTCGTTGTCTGTCT 59.320 55.000 0.00 0.00 0.00 3.41
2321 14943 1.336980 GGGTCCTTCGTTGTCTGTCTC 60.337 57.143 0.00 0.00 0.00 3.36
2322 14944 1.614413 GGTCCTTCGTTGTCTGTCTCT 59.386 52.381 0.00 0.00 0.00 3.10
2323 14945 2.608261 GGTCCTTCGTTGTCTGTCTCTG 60.608 54.545 0.00 0.00 0.00 3.35
2324 14946 2.034812 GTCCTTCGTTGTCTGTCTCTGT 59.965 50.000 0.00 0.00 0.00 3.41
2325 14947 2.693591 TCCTTCGTTGTCTGTCTCTGTT 59.306 45.455 0.00 0.00 0.00 3.16
2326 14948 3.887110 TCCTTCGTTGTCTGTCTCTGTTA 59.113 43.478 0.00 0.00 0.00 2.41
2327 14949 3.982058 CCTTCGTTGTCTGTCTCTGTTAC 59.018 47.826 0.00 0.00 0.00 2.50
2328 14950 4.261656 CCTTCGTTGTCTGTCTCTGTTACT 60.262 45.833 0.00 0.00 0.00 2.24
2329 14951 4.485024 TCGTTGTCTGTCTCTGTTACTC 57.515 45.455 0.00 0.00 0.00 2.59
2330 14952 3.252701 TCGTTGTCTGTCTCTGTTACTCC 59.747 47.826 0.00 0.00 0.00 3.85
2331 14953 3.612004 CGTTGTCTGTCTCTGTTACTCCC 60.612 52.174 0.00 0.00 0.00 4.30
2332 14954 3.527507 TGTCTGTCTCTGTTACTCCCT 57.472 47.619 0.00 0.00 0.00 4.20
2333 14955 3.422796 TGTCTGTCTCTGTTACTCCCTC 58.577 50.000 0.00 0.00 0.00 4.30
2334 14956 3.074687 TGTCTGTCTCTGTTACTCCCTCT 59.925 47.826 0.00 0.00 0.00 3.69
2335 14957 3.442273 GTCTGTCTCTGTTACTCCCTCTG 59.558 52.174 0.00 0.00 0.00 3.35
2336 14958 3.074687 TCTGTCTCTGTTACTCCCTCTGT 59.925 47.826 0.00 0.00 0.00 3.41
2337 14959 4.288887 TCTGTCTCTGTTACTCCCTCTGTA 59.711 45.833 0.00 0.00 0.00 2.74
2338 14960 4.333690 TGTCTCTGTTACTCCCTCTGTAC 58.666 47.826 0.00 0.00 0.00 2.90
2339 14961 4.202535 TGTCTCTGTTACTCCCTCTGTACA 60.203 45.833 0.00 0.00 0.00 2.90
2340 14962 4.156373 GTCTCTGTTACTCCCTCTGTACAC 59.844 50.000 0.00 0.00 0.00 2.90
2341 14963 4.043059 TCTCTGTTACTCCCTCTGTACACT 59.957 45.833 0.00 0.00 0.00 3.55
2342 14964 5.250082 TCTCTGTTACTCCCTCTGTACACTA 59.750 44.000 0.00 0.00 0.00 2.74
2343 14965 5.884322 TCTGTTACTCCCTCTGTACACTAA 58.116 41.667 0.00 0.00 0.00 2.24
2344 14966 6.491383 TCTGTTACTCCCTCTGTACACTAAT 58.509 40.000 0.00 0.00 0.00 1.73
2345 14967 6.377429 TCTGTTACTCCCTCTGTACACTAATG 59.623 42.308 0.00 0.00 0.00 1.90
2346 14968 6.014647 TGTTACTCCCTCTGTACACTAATGT 58.985 40.000 0.00 0.00 43.30 2.71
2347 14969 7.177184 TGTTACTCCCTCTGTACACTAATGTA 58.823 38.462 0.00 0.00 40.48 2.29
2348 14970 7.670979 TGTTACTCCCTCTGTACACTAATGTAA 59.329 37.037 0.00 0.00 42.99 2.41
2349 14971 8.526147 GTTACTCCCTCTGTACACTAATGTAAA 58.474 37.037 0.00 0.00 42.99 2.01
2350 14972 7.549147 ACTCCCTCTGTACACTAATGTAAAA 57.451 36.000 0.00 0.00 42.99 1.52
2351 14973 7.970102 ACTCCCTCTGTACACTAATGTAAAAA 58.030 34.615 0.00 0.00 42.99 1.94
2352 14974 7.876582 ACTCCCTCTGTACACTAATGTAAAAAC 59.123 37.037 0.00 0.00 42.99 2.43
2353 14975 6.869913 TCCCTCTGTACACTAATGTAAAAACG 59.130 38.462 0.00 0.00 42.99 3.60
2354 14976 6.647895 CCCTCTGTACACTAATGTAAAAACGT 59.352 38.462 0.00 0.00 42.99 3.99
2355 14977 7.148689 CCCTCTGTACACTAATGTAAAAACGTC 60.149 40.741 0.00 0.00 42.99 4.34
2356 14978 7.597743 CCTCTGTACACTAATGTAAAAACGTCT 59.402 37.037 0.00 0.00 42.99 4.18
2357 14979 8.876275 TCTGTACACTAATGTAAAAACGTCTT 57.124 30.769 0.00 0.00 42.99 3.01
2358 14980 9.964303 TCTGTACACTAATGTAAAAACGTCTTA 57.036 29.630 0.00 0.00 42.99 2.10
2370 14992 9.964303 TGTAAAAACGTCTTATTAGTGTACTGA 57.036 29.630 0.00 0.00 0.00 3.41
2372 14994 8.530269 AAAAACGTCTTATTAGTGTACTGAGG 57.470 34.615 0.00 0.00 0.00 3.86
2373 14995 6.830873 AACGTCTTATTAGTGTACTGAGGT 57.169 37.500 0.00 0.00 0.00 3.85
2374 14996 7.928307 AACGTCTTATTAGTGTACTGAGGTA 57.072 36.000 0.00 0.00 0.00 3.08
2375 14997 7.551035 ACGTCTTATTAGTGTACTGAGGTAG 57.449 40.000 0.00 0.00 0.00 3.18
2376 14998 7.108847 ACGTCTTATTAGTGTACTGAGGTAGT 58.891 38.462 0.00 0.00 43.56 2.73
2377 14999 8.260818 ACGTCTTATTAGTGTACTGAGGTAGTA 58.739 37.037 0.00 0.00 40.89 1.82
2389 15011 4.929808 ACTGAGGTAGTACTTTTTGCATCG 59.070 41.667 0.00 0.00 38.04 3.84
2390 15012 5.142061 TGAGGTAGTACTTTTTGCATCGA 57.858 39.130 0.00 0.00 0.00 3.59
2391 15013 4.927425 TGAGGTAGTACTTTTTGCATCGAC 59.073 41.667 0.00 0.00 0.00 4.20
2392 15014 4.890088 AGGTAGTACTTTTTGCATCGACA 58.110 39.130 0.00 0.00 0.00 4.35
2393 15015 5.488341 AGGTAGTACTTTTTGCATCGACAT 58.512 37.500 0.00 0.00 0.00 3.06
2394 15016 5.581085 AGGTAGTACTTTTTGCATCGACATC 59.419 40.000 0.00 0.00 0.00 3.06
2395 15017 4.946784 AGTACTTTTTGCATCGACATCC 57.053 40.909 0.00 0.00 0.00 3.51
2396 15018 2.900122 ACTTTTTGCATCGACATCCG 57.100 45.000 0.00 0.00 40.25 4.18
2397 15019 1.135689 ACTTTTTGCATCGACATCCGC 60.136 47.619 0.00 0.00 38.37 5.54
2398 15020 0.877743 TTTTTGCATCGACATCCGCA 59.122 45.000 0.00 0.00 38.37 5.69
2399 15021 0.167908 TTTTGCATCGACATCCGCAC 59.832 50.000 0.00 0.00 38.37 5.34
2400 15022 1.643868 TTTGCATCGACATCCGCACC 61.644 55.000 0.00 0.00 38.37 5.01
2401 15023 2.511373 GCATCGACATCCGCACCA 60.511 61.111 0.00 0.00 38.37 4.17
2402 15024 1.889105 GCATCGACATCCGCACCAT 60.889 57.895 0.00 0.00 38.37 3.55
2403 15025 1.936658 CATCGACATCCGCACCATG 59.063 57.895 0.00 0.00 38.37 3.66
2404 15026 0.811219 CATCGACATCCGCACCATGT 60.811 55.000 0.00 0.00 37.18 3.21
2405 15027 0.750249 ATCGACATCCGCACCATGTA 59.250 50.000 0.00 0.00 34.49 2.29
2406 15028 0.533032 TCGACATCCGCACCATGTAA 59.467 50.000 0.00 0.00 34.49 2.41
2407 15029 0.650512 CGACATCCGCACCATGTAAC 59.349 55.000 0.00 0.00 34.49 2.50
2408 15030 1.739035 CGACATCCGCACCATGTAACT 60.739 52.381 0.00 0.00 34.49 2.24
2409 15031 2.356135 GACATCCGCACCATGTAACTT 58.644 47.619 0.00 0.00 34.49 2.66
2410 15032 3.527533 GACATCCGCACCATGTAACTTA 58.472 45.455 0.00 0.00 34.49 2.24
2411 15033 3.936453 GACATCCGCACCATGTAACTTAA 59.064 43.478 0.00 0.00 34.49 1.85
2412 15034 3.687698 ACATCCGCACCATGTAACTTAAC 59.312 43.478 0.00 0.00 32.48 2.01
2413 15035 3.688694 TCCGCACCATGTAACTTAACT 57.311 42.857 0.00 0.00 0.00 2.24
2414 15036 4.804868 TCCGCACCATGTAACTTAACTA 57.195 40.909 0.00 0.00 0.00 2.24
2415 15037 4.497300 TCCGCACCATGTAACTTAACTAC 58.503 43.478 0.00 0.00 0.00 2.73
2416 15038 4.221262 TCCGCACCATGTAACTTAACTACT 59.779 41.667 0.00 0.00 0.00 2.57
2417 15039 5.418524 TCCGCACCATGTAACTTAACTACTA 59.581 40.000 0.00 0.00 0.00 1.82
2418 15040 5.517770 CCGCACCATGTAACTTAACTACTAC 59.482 44.000 0.00 0.00 0.00 2.73
2419 15041 6.327934 CGCACCATGTAACTTAACTACTACT 58.672 40.000 0.00 0.00 0.00 2.57
2420 15042 7.415541 CCGCACCATGTAACTTAACTACTACTA 60.416 40.741 0.00 0.00 0.00 1.82
2421 15043 8.133627 CGCACCATGTAACTTAACTACTACTAT 58.866 37.037 0.00 0.00 0.00 2.12
2440 15062 9.587772 ACTACTATAACACAATGTCATCAGAAC 57.412 33.333 0.00 0.00 0.00 3.01
2441 15063 9.809096 CTACTATAACACAATGTCATCAGAACT 57.191 33.333 0.00 0.00 0.00 3.01
2446 15068 9.725019 ATAACACAATGTCATCAGAACTAAGAA 57.275 29.630 0.00 0.00 0.00 2.52
2447 15069 8.450578 AACACAATGTCATCAGAACTAAGAAA 57.549 30.769 0.00 0.00 0.00 2.52
2448 15070 8.450578 ACACAATGTCATCAGAACTAAGAAAA 57.549 30.769 0.00 0.00 0.00 2.29
2449 15071 8.562892 ACACAATGTCATCAGAACTAAGAAAAG 58.437 33.333 0.00 0.00 0.00 2.27
2450 15072 7.536622 CACAATGTCATCAGAACTAAGAAAAGC 59.463 37.037 0.00 0.00 0.00 3.51
2451 15073 7.229306 ACAATGTCATCAGAACTAAGAAAAGCA 59.771 33.333 0.00 0.00 0.00 3.91
2452 15074 7.750229 ATGTCATCAGAACTAAGAAAAGCAA 57.250 32.000 0.00 0.00 0.00 3.91
2453 15075 6.959361 TGTCATCAGAACTAAGAAAAGCAAC 58.041 36.000 0.00 0.00 0.00 4.17
2454 15076 6.542005 TGTCATCAGAACTAAGAAAAGCAACA 59.458 34.615 0.00 0.00 0.00 3.33
2455 15077 7.229306 TGTCATCAGAACTAAGAAAAGCAACAT 59.771 33.333 0.00 0.00 0.00 2.71
2456 15078 8.078596 GTCATCAGAACTAAGAAAAGCAACATT 58.921 33.333 0.00 0.00 0.00 2.71
2457 15079 8.632679 TCATCAGAACTAAGAAAAGCAACATTT 58.367 29.630 0.00 0.00 0.00 2.32
2458 15080 8.909671 CATCAGAACTAAGAAAAGCAACATTTC 58.090 33.333 0.00 0.00 37.11 2.17
2459 15081 7.132213 TCAGAACTAAGAAAAGCAACATTTCG 58.868 34.615 0.00 0.00 40.78 3.46
2460 15082 6.912591 CAGAACTAAGAAAAGCAACATTTCGT 59.087 34.615 0.00 0.00 40.78 3.85
2461 15083 8.067784 CAGAACTAAGAAAAGCAACATTTCGTA 58.932 33.333 0.00 0.00 40.78 3.43
2462 15084 8.784043 AGAACTAAGAAAAGCAACATTTCGTAT 58.216 29.630 0.00 0.00 40.78 3.06
2463 15085 9.394477 GAACTAAGAAAAGCAACATTTCGTATT 57.606 29.630 0.00 0.00 40.78 1.89
2464 15086 9.744468 AACTAAGAAAAGCAACATTTCGTATTT 57.256 25.926 0.00 0.00 40.78 1.40
2465 15087 9.180678 ACTAAGAAAAGCAACATTTCGTATTTG 57.819 29.630 0.00 0.00 40.78 2.32
2466 15088 7.406799 AAGAAAAGCAACATTTCGTATTTGG 57.593 32.000 0.00 0.00 40.78 3.28
2467 15089 6.744112 AGAAAAGCAACATTTCGTATTTGGA 58.256 32.000 0.00 0.00 40.78 3.53
2468 15090 6.863126 AGAAAAGCAACATTTCGTATTTGGAG 59.137 34.615 0.00 0.00 40.78 3.86
2469 15091 5.705609 AAGCAACATTTCGTATTTGGAGT 57.294 34.783 0.00 0.00 0.00 3.85
2470 15092 5.705609 AGCAACATTTCGTATTTGGAGTT 57.294 34.783 0.00 0.00 0.00 3.01
2471 15093 6.084326 AGCAACATTTCGTATTTGGAGTTT 57.916 33.333 0.00 0.00 0.00 2.66
2472 15094 5.920273 AGCAACATTTCGTATTTGGAGTTTG 59.080 36.000 0.00 0.00 0.00 2.93
2473 15095 5.118510 GCAACATTTCGTATTTGGAGTTTGG 59.881 40.000 0.00 0.00 0.00 3.28
2474 15096 6.442952 CAACATTTCGTATTTGGAGTTTGGA 58.557 36.000 0.00 0.00 0.00 3.53
2475 15097 6.009115 ACATTTCGTATTTGGAGTTTGGAC 57.991 37.500 0.00 0.00 0.00 4.02
2476 15098 5.048294 ACATTTCGTATTTGGAGTTTGGACC 60.048 40.000 0.00 0.00 0.00 4.46
2477 15099 3.773418 TCGTATTTGGAGTTTGGACCA 57.227 42.857 0.00 0.00 0.00 4.02
2478 15100 4.088056 TCGTATTTGGAGTTTGGACCAA 57.912 40.909 1.69 1.69 43.22 3.67
2479 15101 3.816523 TCGTATTTGGAGTTTGGACCAAC 59.183 43.478 6.36 2.56 44.34 3.77
2480 15102 3.566322 CGTATTTGGAGTTTGGACCAACA 59.434 43.478 6.36 0.00 44.34 3.33
2481 15103 4.036971 CGTATTTGGAGTTTGGACCAACAA 59.963 41.667 6.36 5.14 44.34 2.83
2482 15104 5.450688 CGTATTTGGAGTTTGGACCAACAAA 60.451 40.000 18.00 18.00 44.34 2.83
2483 15105 4.891992 TTTGGAGTTTGGACCAACAAAA 57.108 36.364 14.93 5.36 44.34 2.44
2484 15106 4.891992 TTGGAGTTTGGACCAACAAAAA 57.108 36.364 6.36 0.00 41.53 1.94
2485 15107 4.464069 TGGAGTTTGGACCAACAAAAAG 57.536 40.909 6.36 0.00 41.53 2.27
2486 15108 4.090090 TGGAGTTTGGACCAACAAAAAGA 58.910 39.130 6.36 0.00 41.53 2.52
2487 15109 4.528596 TGGAGTTTGGACCAACAAAAAGAA 59.471 37.500 6.36 0.00 41.53 2.52
2488 15110 5.188751 TGGAGTTTGGACCAACAAAAAGAAT 59.811 36.000 6.36 0.00 41.53 2.40
2489 15111 6.381420 TGGAGTTTGGACCAACAAAAAGAATA 59.619 34.615 6.36 0.00 41.53 1.75
2490 15112 7.070571 TGGAGTTTGGACCAACAAAAAGAATAT 59.929 33.333 6.36 0.00 41.53 1.28
2491 15113 8.581578 GGAGTTTGGACCAACAAAAAGAATATA 58.418 33.333 6.36 0.00 41.53 0.86
2492 15114 9.406828 GAGTTTGGACCAACAAAAAGAATATAC 57.593 33.333 6.36 0.00 41.53 1.47
2493 15115 8.919145 AGTTTGGACCAACAAAAAGAATATACA 58.081 29.630 6.36 0.00 41.53 2.29
2494 15116 9.705290 GTTTGGACCAACAAAAAGAATATACAT 57.295 29.630 6.36 0.00 41.53 2.29
2514 15136 8.798859 ATACATTTTCTTCAACTCATAGTGCT 57.201 30.769 0.00 0.00 0.00 4.40
2515 15137 9.890629 ATACATTTTCTTCAACTCATAGTGCTA 57.109 29.630 0.00 0.00 0.00 3.49
2516 15138 8.034058 ACATTTTCTTCAACTCATAGTGCTAC 57.966 34.615 0.00 0.00 0.00 3.58
2517 15139 7.661437 ACATTTTCTTCAACTCATAGTGCTACA 59.339 33.333 0.00 0.00 0.00 2.74
2518 15140 7.658179 TTTTCTTCAACTCATAGTGCTACAG 57.342 36.000 0.00 0.00 0.00 2.74
2519 15141 6.590234 TTCTTCAACTCATAGTGCTACAGA 57.410 37.500 0.00 0.00 0.00 3.41
2520 15142 6.590234 TCTTCAACTCATAGTGCTACAGAA 57.410 37.500 0.00 0.00 0.00 3.02
2521 15143 7.175347 TCTTCAACTCATAGTGCTACAGAAT 57.825 36.000 0.00 0.00 0.00 2.40
2522 15144 8.293699 TCTTCAACTCATAGTGCTACAGAATA 57.706 34.615 0.00 0.00 0.00 1.75
2523 15145 8.918116 TCTTCAACTCATAGTGCTACAGAATAT 58.082 33.333 0.00 0.00 0.00 1.28
2524 15146 8.877808 TTCAACTCATAGTGCTACAGAATATG 57.122 34.615 0.00 0.00 0.00 1.78
2525 15147 8.011844 TCAACTCATAGTGCTACAGAATATGT 57.988 34.615 0.00 0.00 46.45 2.29
2526 15148 8.478066 TCAACTCATAGTGCTACAGAATATGTT 58.522 33.333 0.00 0.00 39.96 2.71
2527 15149 8.759641 CAACTCATAGTGCTACAGAATATGTTC 58.240 37.037 0.00 0.00 39.96 3.18
2528 15150 8.011844 ACTCATAGTGCTACAGAATATGTTCA 57.988 34.615 4.92 0.00 39.96 3.18
2529 15151 8.140628 ACTCATAGTGCTACAGAATATGTTCAG 58.859 37.037 4.92 0.00 39.96 3.02
2530 15152 8.011844 TCATAGTGCTACAGAATATGTTCAGT 57.988 34.615 4.92 5.29 39.96 3.41
2531 15153 8.478066 TCATAGTGCTACAGAATATGTTCAGTT 58.522 33.333 5.60 0.00 39.96 3.16
2532 15154 6.974932 AGTGCTACAGAATATGTTCAGTTG 57.025 37.500 5.60 5.39 39.96 3.16
2533 15155 6.467677 AGTGCTACAGAATATGTTCAGTTGT 58.532 36.000 5.60 3.65 39.96 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.647615 AGACAAGACGCGCGCACT 62.648 61.111 32.58 25.93 0.00 4.40
2 3 3.545707 TACAGACAAGACGCGCGCA 62.546 57.895 32.58 3.07 0.00 6.09
8 9 2.094649 GGGAAGAGGTACAGACAAGACG 60.095 54.545 0.00 0.00 0.00 4.18
9 10 3.166679 AGGGAAGAGGTACAGACAAGAC 58.833 50.000 0.00 0.00 0.00 3.01
42 2249 2.096860 GCTTTCGAAAGTTGGAGACGTC 60.097 50.000 32.32 7.70 38.28 4.34
136 2347 4.080299 ACAAGGTCTTCCAAAGTCTCAAGT 60.080 41.667 0.00 0.00 35.89 3.16
171 2382 5.999600 TGAATACATGATGGGCAAGTATGAG 59.000 40.000 0.00 0.00 39.68 2.90
207 2421 6.612247 TTATCATTGTCTGTTGTCGTTTGT 57.388 33.333 0.00 0.00 0.00 2.83
255 2472 3.507622 TCTCAACGTCTCATCATCACACT 59.492 43.478 0.00 0.00 0.00 3.55
320 2549 0.038067 TGGCCATATACGCGCGTTAT 60.038 50.000 42.10 30.25 0.00 1.89
335 2564 5.515797 AAAGTTACAAAGAGAGTTTGGCC 57.484 39.130 0.00 0.00 33.92 5.36
359 2588 2.229792 TGGTCACACAGAAATGGCTTC 58.770 47.619 0.00 0.00 0.00 3.86
400 2633 8.339344 TGATGGTAATATAATTGCTGGTGATG 57.661 34.615 0.00 0.00 0.00 3.07
409 2642 7.541783 CCCAAACGCATGATGGTAATATAATTG 59.458 37.037 0.00 0.00 32.13 2.32
462 2709 3.671008 TGTACAGCCGACAAGTACAAT 57.329 42.857 5.06 0.00 43.46 2.71
482 2729 4.587262 TGTTGTCGTATGCTAGGTATGGAT 59.413 41.667 0.00 0.00 0.00 3.41
490 2743 7.756722 TGATGATGATATGTTGTCGTATGCTAG 59.243 37.037 0.00 0.00 0.00 3.42
698 4208 2.515523 AGTGCCAGATCCGCATGC 60.516 61.111 7.91 7.91 38.76 4.06
813 7743 9.906660 CGCCTTGCCTAAAAATATTTCATATAA 57.093 29.630 0.10 0.00 0.00 0.98
840 7770 4.141597 TGTGGATGTGGTGTCACTAAAAGA 60.142 41.667 2.35 0.00 43.94 2.52
966 8678 4.271049 TCTTGTTTTGCTTGAGAAGAGACG 59.729 41.667 0.00 0.00 0.00 4.18
992 8737 5.065731 GTGTTAGGATCTTTCATGGCTTCTG 59.934 44.000 0.00 0.00 0.00 3.02
1236 9011 1.326213 CGATCCTCCTGCACCTCTGT 61.326 60.000 0.00 0.00 0.00 3.41
1557 9337 1.370900 CTGTCCGCAAAAGCACTGC 60.371 57.895 0.00 0.00 36.41 4.40
1571 9351 1.971357 TGGAGACCAGGTCTTTCTGTC 59.029 52.381 23.78 9.50 43.53 3.51
1582 9362 2.038689 CCCTGATCATCATGGAGACCAG 59.961 54.545 2.80 3.45 36.75 4.00
1711 9797 4.512944 TGATCAACAAAGAGTGCAGTCTTC 59.487 41.667 31.73 20.06 35.65 2.87
1712 9798 4.454678 TGATCAACAAAGAGTGCAGTCTT 58.545 39.130 27.60 27.60 38.48 3.01
1750 9836 3.383185 TGATCAACAAATAATTCCGGGCC 59.617 43.478 0.00 0.00 0.00 5.80
1763 10747 4.797868 CGACAAAGTTTTGCTGATCAACAA 59.202 37.500 7.45 7.45 41.79 2.83
1767 10753 3.376859 ACACGACAAAGTTTTGCTGATCA 59.623 39.130 4.58 0.00 41.79 2.92
1768 10754 3.952535 ACACGACAAAGTTTTGCTGATC 58.047 40.909 4.58 0.00 41.79 2.92
1785 10771 4.643784 AGGGAGTACTACTTATTGGACACG 59.356 45.833 4.77 0.00 0.00 4.49
1803 10789 5.701290 GTCATATATTTTGGAACGGAGGGAG 59.299 44.000 0.00 0.00 0.00 4.30
1804 10790 5.455612 GGTCATATATTTTGGAACGGAGGGA 60.456 44.000 0.00 0.00 0.00 4.20
1805 10791 4.760204 GGTCATATATTTTGGAACGGAGGG 59.240 45.833 0.00 0.00 0.00 4.30
1806 10792 4.760204 GGGTCATATATTTTGGAACGGAGG 59.240 45.833 0.00 0.00 0.00 4.30
1807 10793 5.373222 TGGGTCATATATTTTGGAACGGAG 58.627 41.667 0.00 0.00 0.00 4.63
1808 10794 5.375283 TGGGTCATATATTTTGGAACGGA 57.625 39.130 0.00 0.00 0.00 4.69
1809 10795 5.592688 AGTTGGGTCATATATTTTGGAACGG 59.407 40.000 0.00 0.00 0.00 4.44
1810 10796 6.693315 AGTTGGGTCATATATTTTGGAACG 57.307 37.500 0.00 0.00 0.00 3.95
1811 10797 8.311109 ACAAAGTTGGGTCATATATTTTGGAAC 58.689 33.333 7.01 0.00 0.00 3.62
1812 10798 8.429237 ACAAAGTTGGGTCATATATTTTGGAA 57.571 30.769 7.01 0.00 0.00 3.53
1813 10799 8.962679 GTACAAAGTTGGGTCATATATTTTGGA 58.037 33.333 7.01 0.00 0.00 3.53
1814 10800 8.966868 AGTACAAAGTTGGGTCATATATTTTGG 58.033 33.333 0.00 0.00 0.00 3.28
1822 10808 9.715121 CTAACTTTAGTACAAAGTTGGGTCATA 57.285 33.333 27.85 15.67 46.41 2.15
1823 10809 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
1824 10810 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
1837 10823 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
1838 10824 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
1839 10825 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
1840 10826 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
1841 10827 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
1842 10828 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
1843 10829 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
1844 10830 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
1845 10831 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1846 10832 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1847 10833 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
1848 10834 7.039993 ACCAAAATAGATGACCCAACTTTGTAC 60.040 37.037 0.00 0.00 0.00 2.90
1849 10835 7.007723 ACCAAAATAGATGACCCAACTTTGTA 58.992 34.615 0.00 0.00 0.00 2.41
1850 10836 5.838521 ACCAAAATAGATGACCCAACTTTGT 59.161 36.000 0.00 0.00 0.00 2.83
1851 10837 6.345096 ACCAAAATAGATGACCCAACTTTG 57.655 37.500 0.00 0.00 0.00 2.77
1852 10838 6.994421 AACCAAAATAGATGACCCAACTTT 57.006 33.333 0.00 0.00 0.00 2.66
1853 10839 7.238710 ACTAACCAAAATAGATGACCCAACTT 58.761 34.615 0.00 0.00 0.00 2.66
1854 10840 6.790319 ACTAACCAAAATAGATGACCCAACT 58.210 36.000 0.00 0.00 0.00 3.16
1855 10841 7.608761 TGTACTAACCAAAATAGATGACCCAAC 59.391 37.037 0.00 0.00 0.00 3.77
1856 10842 7.691213 TGTACTAACCAAAATAGATGACCCAA 58.309 34.615 0.00 0.00 0.00 4.12
1857 10843 7.260387 TGTACTAACCAAAATAGATGACCCA 57.740 36.000 0.00 0.00 0.00 4.51
1858 10844 8.570068 TTTGTACTAACCAAAATAGATGACCC 57.430 34.615 0.00 0.00 0.00 4.46
1859 10845 9.227777 ACTTTGTACTAACCAAAATAGATGACC 57.772 33.333 0.00 0.00 31.86 4.02
1862 10848 9.840427 CCAACTTTGTACTAACCAAAATAGATG 57.160 33.333 0.00 0.00 31.86 2.90
1863 10849 9.020731 CCCAACTTTGTACTAACCAAAATAGAT 57.979 33.333 0.00 0.00 31.86 1.98
1864 10850 8.000127 ACCCAACTTTGTACTAACCAAAATAGA 59.000 33.333 0.00 0.00 31.86 1.98
1865 10851 8.173542 ACCCAACTTTGTACTAACCAAAATAG 57.826 34.615 0.00 0.00 31.86 1.73
1866 10852 7.778853 TGACCCAACTTTGTACTAACCAAAATA 59.221 33.333 0.00 0.00 31.86 1.40
1867 10853 6.608002 TGACCCAACTTTGTACTAACCAAAAT 59.392 34.615 0.00 0.00 31.86 1.82
1868 10854 5.950549 TGACCCAACTTTGTACTAACCAAAA 59.049 36.000 0.00 0.00 31.86 2.44
1869 10855 5.507637 TGACCCAACTTTGTACTAACCAAA 58.492 37.500 0.00 0.00 0.00 3.28
1870 10856 5.113446 TGACCCAACTTTGTACTAACCAA 57.887 39.130 0.00 0.00 0.00 3.67
1871 10857 4.774660 TGACCCAACTTTGTACTAACCA 57.225 40.909 0.00 0.00 0.00 3.67
1872 10858 5.557866 AGATGACCCAACTTTGTACTAACC 58.442 41.667 0.00 0.00 0.00 2.85
1873 10859 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
1874 10860 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1875 10861 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1876 10862 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
1877 10863 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
1878 10864 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1879 10865 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
1880 10866 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1881 10867 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1882 10868 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1883 10869 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1884 10870 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1885 10871 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1886 10872 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1887 10873 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1888 10874 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1889 10875 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1890 10876 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1891 10877 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1892 10878 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1893 10879 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1894 10880 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1895 10881 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
1896 10882 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
1897 10883 4.076394 CAAATACTCCCTCCGTTCCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
1898 10884 3.328343 TCAAATACTCCCTCCGTTCCAAA 59.672 43.478 0.00 0.00 0.00 3.28
1899 10885 2.907696 TCAAATACTCCCTCCGTTCCAA 59.092 45.455 0.00 0.00 0.00 3.53
1900 10886 2.500098 CTCAAATACTCCCTCCGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
1901 10887 2.500504 ACTCAAATACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
1902 10888 3.056035 ACACTCAAATACTCCCTCCGTTC 60.056 47.826 0.00 0.00 0.00 3.95
1903 10889 2.904434 ACACTCAAATACTCCCTCCGTT 59.096 45.455 0.00 0.00 0.00 4.44
1904 10890 2.233922 CACACTCAAATACTCCCTCCGT 59.766 50.000 0.00 0.00 0.00 4.69
1905 10891 2.233922 ACACACTCAAATACTCCCTCCG 59.766 50.000 0.00 0.00 0.00 4.63
1906 10892 3.260884 TCACACACTCAAATACTCCCTCC 59.739 47.826 0.00 0.00 0.00 4.30
1907 10893 4.537135 TCACACACTCAAATACTCCCTC 57.463 45.455 0.00 0.00 0.00 4.30
1908 10894 4.974645 TTCACACACTCAAATACTCCCT 57.025 40.909 0.00 0.00 0.00 4.20
1909 10895 5.531287 ACTTTTCACACACTCAAATACTCCC 59.469 40.000 0.00 0.00 0.00 4.30
1910 10896 6.619801 ACTTTTCACACACTCAAATACTCC 57.380 37.500 0.00 0.00 0.00 3.85
1911 10897 6.414987 GCAACTTTTCACACACTCAAATACTC 59.585 38.462 0.00 0.00 0.00 2.59
1961 10947 5.810525 ACAACAGAACTTGAATTCGAACTG 58.189 37.500 0.00 16.19 33.57 3.16
2062 11052 5.991933 TTCATTTGGCAGCTTATTTACCA 57.008 34.783 0.00 0.00 0.00 3.25
2063 11053 7.334171 ACATTTTCATTTGGCAGCTTATTTACC 59.666 33.333 0.00 0.00 0.00 2.85
2161 14783 7.568199 TTATTAGACTTAATTTCCCAGCTGC 57.432 36.000 8.66 0.00 31.97 5.25
2262 14884 5.234116 CGCACTAATACTGTATGCATGTGAA 59.766 40.000 10.16 0.00 36.02 3.18
2263 14885 4.744631 CGCACTAATACTGTATGCATGTGA 59.255 41.667 10.16 0.00 36.02 3.58
2264 14886 4.609113 GCGCACTAATACTGTATGCATGTG 60.609 45.833 10.16 6.55 36.02 3.21
2265 14887 3.494626 GCGCACTAATACTGTATGCATGT 59.505 43.478 10.16 0.85 36.02 3.21
2266 14888 3.494251 TGCGCACTAATACTGTATGCATG 59.506 43.478 5.66 0.00 36.02 4.06
2267 14889 3.494626 GTGCGCACTAATACTGTATGCAT 59.505 43.478 32.55 3.79 36.02 3.96
2268 14890 2.863740 GTGCGCACTAATACTGTATGCA 59.136 45.455 32.55 7.72 36.02 3.96
2269 14891 2.863740 TGTGCGCACTAATACTGTATGC 59.136 45.455 37.59 9.94 0.00 3.14
2270 14892 3.862845 TGTGTGCGCACTAATACTGTATG 59.137 43.478 37.59 0.00 45.44 2.39
2271 14893 3.863424 GTGTGTGCGCACTAATACTGTAT 59.137 43.478 37.59 0.00 45.44 2.29
2272 14894 3.247442 GTGTGTGCGCACTAATACTGTA 58.753 45.455 37.59 14.52 45.44 2.74
2273 14895 2.066262 GTGTGTGCGCACTAATACTGT 58.934 47.619 37.59 0.00 45.44 3.55
2274 14896 2.065512 TGTGTGTGCGCACTAATACTG 58.934 47.619 37.59 0.00 45.44 2.74
2275 14897 2.337583 CTGTGTGTGCGCACTAATACT 58.662 47.619 37.59 0.00 45.44 2.12
2276 14898 1.393539 CCTGTGTGTGCGCACTAATAC 59.606 52.381 37.59 27.77 45.44 1.89
2277 14899 1.674519 CCCTGTGTGTGCGCACTAATA 60.675 52.381 37.59 23.18 45.44 0.98
2278 14900 0.955428 CCCTGTGTGTGCGCACTAAT 60.955 55.000 37.59 0.00 45.44 1.73
2279 14901 1.596752 CCCTGTGTGTGCGCACTAA 60.597 57.895 37.59 24.34 45.44 2.24
2280 14902 2.030412 CCCTGTGTGTGCGCACTA 59.970 61.111 37.59 25.06 45.44 2.74
2281 14903 3.860605 TCCCTGTGTGTGCGCACT 61.861 61.111 37.59 0.00 45.44 4.40
2282 14904 3.649986 GTCCCTGTGTGTGCGCAC 61.650 66.667 33.11 33.11 45.44 5.34
2283 14905 4.168291 TGTCCCTGTGTGTGCGCA 62.168 61.111 5.66 5.66 0.00 6.09
2284 14906 3.349006 CTGTCCCTGTGTGTGCGC 61.349 66.667 0.00 0.00 0.00 6.09
2285 14907 2.666190 CCTGTCCCTGTGTGTGCG 60.666 66.667 0.00 0.00 0.00 5.34
2286 14908 2.281761 CCCTGTCCCTGTGTGTGC 60.282 66.667 0.00 0.00 0.00 4.57
2287 14909 1.071471 GACCCTGTCCCTGTGTGTG 59.929 63.158 0.00 0.00 0.00 3.82
2288 14910 2.147387 GGACCCTGTCCCTGTGTGT 61.147 63.158 1.68 0.00 46.19 3.72
2289 14911 2.750350 GGACCCTGTCCCTGTGTG 59.250 66.667 1.68 0.00 46.19 3.82
2297 14919 0.680061 AGACAACGAAGGACCCTGTC 59.320 55.000 0.00 0.00 37.30 3.51
2298 14920 0.393077 CAGACAACGAAGGACCCTGT 59.607 55.000 0.00 0.00 0.00 4.00
2299 14921 0.393077 ACAGACAACGAAGGACCCTG 59.607 55.000 0.00 0.00 0.00 4.45
2300 14922 0.680061 GACAGACAACGAAGGACCCT 59.320 55.000 0.00 0.00 0.00 4.34
2301 14923 0.680061 AGACAGACAACGAAGGACCC 59.320 55.000 0.00 0.00 0.00 4.46
2302 14924 1.614413 AGAGACAGACAACGAAGGACC 59.386 52.381 0.00 0.00 0.00 4.46
2303 14925 2.034812 ACAGAGACAGACAACGAAGGAC 59.965 50.000 0.00 0.00 0.00 3.85
2304 14926 2.307768 ACAGAGACAGACAACGAAGGA 58.692 47.619 0.00 0.00 0.00 3.36
2305 14927 2.802787 ACAGAGACAGACAACGAAGG 57.197 50.000 0.00 0.00 0.00 3.46
2306 14928 4.861210 AGTAACAGAGACAGACAACGAAG 58.139 43.478 0.00 0.00 0.00 3.79
2307 14929 4.261489 GGAGTAACAGAGACAGACAACGAA 60.261 45.833 0.00 0.00 0.00 3.85
2308 14930 3.252701 GGAGTAACAGAGACAGACAACGA 59.747 47.826 0.00 0.00 0.00 3.85
2309 14931 3.566523 GGAGTAACAGAGACAGACAACG 58.433 50.000 0.00 0.00 0.00 4.10
2310 14932 3.574826 AGGGAGTAACAGAGACAGACAAC 59.425 47.826 0.00 0.00 0.00 3.32
2311 14933 3.827302 GAGGGAGTAACAGAGACAGACAA 59.173 47.826 0.00 0.00 0.00 3.18
2312 14934 3.074687 AGAGGGAGTAACAGAGACAGACA 59.925 47.826 0.00 0.00 0.00 3.41
2313 14935 3.442273 CAGAGGGAGTAACAGAGACAGAC 59.558 52.174 0.00 0.00 0.00 3.51
2314 14936 3.074687 ACAGAGGGAGTAACAGAGACAGA 59.925 47.826 0.00 0.00 0.00 3.41
2315 14937 3.426615 ACAGAGGGAGTAACAGAGACAG 58.573 50.000 0.00 0.00 0.00 3.51
2316 14938 3.527507 ACAGAGGGAGTAACAGAGACA 57.472 47.619 0.00 0.00 0.00 3.41
2317 14939 4.156373 GTGTACAGAGGGAGTAACAGAGAC 59.844 50.000 0.00 0.00 0.00 3.36
2318 14940 4.043059 AGTGTACAGAGGGAGTAACAGAGA 59.957 45.833 0.00 0.00 0.00 3.10
2319 14941 4.337145 AGTGTACAGAGGGAGTAACAGAG 58.663 47.826 0.00 0.00 0.00 3.35
2320 14942 4.383931 AGTGTACAGAGGGAGTAACAGA 57.616 45.455 0.00 0.00 0.00 3.41
2321 14943 6.153000 ACATTAGTGTACAGAGGGAGTAACAG 59.847 42.308 0.00 0.00 36.63 3.16
2322 14944 6.014647 ACATTAGTGTACAGAGGGAGTAACA 58.985 40.000 0.00 0.00 36.63 2.41
2323 14945 6.527057 ACATTAGTGTACAGAGGGAGTAAC 57.473 41.667 0.00 0.00 36.63 2.50
2324 14946 8.654485 TTTACATTAGTGTACAGAGGGAGTAA 57.346 34.615 0.00 0.00 40.40 2.24
2325 14947 8.654485 TTTTACATTAGTGTACAGAGGGAGTA 57.346 34.615 0.00 0.00 40.40 2.59
2326 14948 7.549147 TTTTACATTAGTGTACAGAGGGAGT 57.451 36.000 0.00 0.00 40.40 3.85
2327 14949 7.063074 CGTTTTTACATTAGTGTACAGAGGGAG 59.937 40.741 0.00 0.00 40.40 4.30
2328 14950 6.869913 CGTTTTTACATTAGTGTACAGAGGGA 59.130 38.462 0.00 0.00 40.40 4.20
2329 14951 6.647895 ACGTTTTTACATTAGTGTACAGAGGG 59.352 38.462 0.00 0.00 40.40 4.30
2330 14952 7.597743 AGACGTTTTTACATTAGTGTACAGAGG 59.402 37.037 0.00 0.00 40.40 3.69
2331 14953 8.516811 AGACGTTTTTACATTAGTGTACAGAG 57.483 34.615 0.00 0.00 40.40 3.35
2332 14954 8.876275 AAGACGTTTTTACATTAGTGTACAGA 57.124 30.769 0.00 0.00 40.40 3.41
2344 14966 9.964303 TCAGTACACTAATAAGACGTTTTTACA 57.036 29.630 0.00 0.00 0.00 2.41
2346 14968 9.630098 CCTCAGTACACTAATAAGACGTTTTTA 57.370 33.333 0.00 0.00 0.00 1.52
2347 14969 8.146412 ACCTCAGTACACTAATAAGACGTTTTT 58.854 33.333 0.00 0.00 0.00 1.94
2348 14970 7.664758 ACCTCAGTACACTAATAAGACGTTTT 58.335 34.615 0.00 0.00 0.00 2.43
2349 14971 7.224522 ACCTCAGTACACTAATAAGACGTTT 57.775 36.000 0.00 0.00 0.00 3.60
2350 14972 6.830873 ACCTCAGTACACTAATAAGACGTT 57.169 37.500 0.00 0.00 0.00 3.99
2351 14973 7.108847 ACTACCTCAGTACACTAATAAGACGT 58.891 38.462 0.00 0.00 34.98 4.34
2352 14974 7.551035 ACTACCTCAGTACACTAATAAGACG 57.449 40.000 0.00 0.00 34.98 4.18
2365 14987 6.071784 TCGATGCAAAAAGTACTACCTCAGTA 60.072 38.462 0.00 0.00 38.80 2.74
2366 14988 4.929808 CGATGCAAAAAGTACTACCTCAGT 59.070 41.667 0.00 0.00 41.62 3.41
2367 14989 5.062308 GTCGATGCAAAAAGTACTACCTCAG 59.938 44.000 0.00 0.00 0.00 3.35
2368 14990 4.927425 GTCGATGCAAAAAGTACTACCTCA 59.073 41.667 0.00 0.00 0.00 3.86
2369 14991 4.927425 TGTCGATGCAAAAAGTACTACCTC 59.073 41.667 0.00 0.00 0.00 3.85
2370 14992 4.890088 TGTCGATGCAAAAAGTACTACCT 58.110 39.130 0.00 0.00 0.00 3.08
2371 14993 5.220605 GGATGTCGATGCAAAAAGTACTACC 60.221 44.000 0.00 0.00 0.00 3.18
2372 14994 5.500290 CGGATGTCGATGCAAAAAGTACTAC 60.500 44.000 0.00 0.00 42.43 2.73
2373 14995 4.565166 CGGATGTCGATGCAAAAAGTACTA 59.435 41.667 0.00 0.00 42.43 1.82
2374 14996 3.370978 CGGATGTCGATGCAAAAAGTACT 59.629 43.478 0.00 0.00 42.43 2.73
2375 14997 3.670203 CGGATGTCGATGCAAAAAGTAC 58.330 45.455 0.00 0.00 42.43 2.73
2376 14998 2.095213 GCGGATGTCGATGCAAAAAGTA 59.905 45.455 0.00 0.00 42.43 2.24
2377 14999 1.135689 GCGGATGTCGATGCAAAAAGT 60.136 47.619 0.00 0.00 42.43 2.66
2378 15000 1.135717 TGCGGATGTCGATGCAAAAAG 60.136 47.619 0.00 0.00 42.43 2.27
2379 15001 0.877743 TGCGGATGTCGATGCAAAAA 59.122 45.000 0.00 0.00 42.43 1.94
2380 15002 0.167908 GTGCGGATGTCGATGCAAAA 59.832 50.000 0.00 0.00 42.43 2.44
2381 15003 1.643868 GGTGCGGATGTCGATGCAAA 61.644 55.000 0.00 0.00 42.43 3.68
2382 15004 2.106074 GGTGCGGATGTCGATGCAA 61.106 57.895 0.00 0.00 42.43 4.08
2383 15005 2.511373 GGTGCGGATGTCGATGCA 60.511 61.111 0.00 0.00 42.43 3.96
2384 15006 1.889105 ATGGTGCGGATGTCGATGC 60.889 57.895 0.00 0.00 42.43 3.91
2385 15007 0.811219 ACATGGTGCGGATGTCGATG 60.811 55.000 0.00 0.00 42.43 3.84
2386 15008 0.750249 TACATGGTGCGGATGTCGAT 59.250 50.000 0.00 0.00 42.43 3.59
2387 15009 0.533032 TTACATGGTGCGGATGTCGA 59.467 50.000 0.00 0.00 42.43 4.20
2388 15010 0.650512 GTTACATGGTGCGGATGTCG 59.349 55.000 0.00 0.00 42.76 4.35
2389 15011 2.024176 AGTTACATGGTGCGGATGTC 57.976 50.000 0.00 0.00 35.62 3.06
2390 15012 2.489938 AAGTTACATGGTGCGGATGT 57.510 45.000 0.00 0.00 37.75 3.06
2391 15013 3.938963 AGTTAAGTTACATGGTGCGGATG 59.061 43.478 0.00 0.00 0.00 3.51
2392 15014 4.216411 AGTTAAGTTACATGGTGCGGAT 57.784 40.909 0.00 0.00 0.00 4.18
2393 15015 3.688694 AGTTAAGTTACATGGTGCGGA 57.311 42.857 0.00 0.00 0.00 5.54
2394 15016 4.501071 AGTAGTTAAGTTACATGGTGCGG 58.499 43.478 0.00 0.00 0.00 5.69
2395 15017 6.327934 AGTAGTAGTTAAGTTACATGGTGCG 58.672 40.000 0.00 0.00 0.00 5.34
2414 15036 9.587772 GTTCTGATGACATTGTGTTATAGTAGT 57.412 33.333 0.00 0.00 0.00 2.73
2415 15037 9.809096 AGTTCTGATGACATTGTGTTATAGTAG 57.191 33.333 0.00 0.00 0.00 2.57
2420 15042 9.725019 TTCTTAGTTCTGATGACATTGTGTTAT 57.275 29.630 0.00 0.00 0.00 1.89
2421 15043 9.554395 TTTCTTAGTTCTGATGACATTGTGTTA 57.446 29.630 0.00 0.00 0.00 2.41
2422 15044 8.450578 TTTCTTAGTTCTGATGACATTGTGTT 57.549 30.769 0.00 0.00 0.00 3.32
2423 15045 8.450578 TTTTCTTAGTTCTGATGACATTGTGT 57.549 30.769 0.00 0.00 0.00 3.72
2424 15046 7.536622 GCTTTTCTTAGTTCTGATGACATTGTG 59.463 37.037 0.00 0.00 0.00 3.33
2425 15047 7.229306 TGCTTTTCTTAGTTCTGATGACATTGT 59.771 33.333 0.00 0.00 0.00 2.71
2426 15048 7.587629 TGCTTTTCTTAGTTCTGATGACATTG 58.412 34.615 0.00 0.00 0.00 2.82
2427 15049 7.750229 TGCTTTTCTTAGTTCTGATGACATT 57.250 32.000 0.00 0.00 0.00 2.71
2428 15050 7.229306 TGTTGCTTTTCTTAGTTCTGATGACAT 59.771 33.333 0.00 0.00 0.00 3.06
2429 15051 6.542005 TGTTGCTTTTCTTAGTTCTGATGACA 59.458 34.615 0.00 0.00 0.00 3.58
2430 15052 6.959361 TGTTGCTTTTCTTAGTTCTGATGAC 58.041 36.000 0.00 0.00 0.00 3.06
2431 15053 7.750229 ATGTTGCTTTTCTTAGTTCTGATGA 57.250 32.000 0.00 0.00 0.00 2.92
2432 15054 8.807667 AAATGTTGCTTTTCTTAGTTCTGATG 57.192 30.769 0.00 0.00 0.00 3.07
2433 15055 7.805071 CGAAATGTTGCTTTTCTTAGTTCTGAT 59.195 33.333 0.00 0.00 32.18 2.90
2434 15056 7.132213 CGAAATGTTGCTTTTCTTAGTTCTGA 58.868 34.615 0.00 0.00 32.18 3.27
2435 15057 6.912591 ACGAAATGTTGCTTTTCTTAGTTCTG 59.087 34.615 0.00 0.00 32.18 3.02
2436 15058 7.027778 ACGAAATGTTGCTTTTCTTAGTTCT 57.972 32.000 0.00 0.00 32.18 3.01
2437 15059 8.950403 ATACGAAATGTTGCTTTTCTTAGTTC 57.050 30.769 0.00 0.00 32.18 3.01
2438 15060 9.744468 AAATACGAAATGTTGCTTTTCTTAGTT 57.256 25.926 0.00 0.00 32.18 2.24
2439 15061 9.180678 CAAATACGAAATGTTGCTTTTCTTAGT 57.819 29.630 0.00 0.00 32.18 2.24
2440 15062 8.638565 CCAAATACGAAATGTTGCTTTTCTTAG 58.361 33.333 0.00 0.00 32.18 2.18
2441 15063 8.353684 TCCAAATACGAAATGTTGCTTTTCTTA 58.646 29.630 0.00 0.00 32.18 2.10
2442 15064 7.206687 TCCAAATACGAAATGTTGCTTTTCTT 58.793 30.769 0.00 0.00 32.18 2.52
2443 15065 6.744112 TCCAAATACGAAATGTTGCTTTTCT 58.256 32.000 0.00 0.00 32.18 2.52
2444 15066 6.640907 ACTCCAAATACGAAATGTTGCTTTTC 59.359 34.615 0.00 0.00 0.00 2.29
2445 15067 6.512297 ACTCCAAATACGAAATGTTGCTTTT 58.488 32.000 0.00 0.00 0.00 2.27
2446 15068 6.084326 ACTCCAAATACGAAATGTTGCTTT 57.916 33.333 0.00 0.00 0.00 3.51
2447 15069 5.705609 ACTCCAAATACGAAATGTTGCTT 57.294 34.783 0.00 0.00 0.00 3.91
2448 15070 5.705609 AACTCCAAATACGAAATGTTGCT 57.294 34.783 0.00 0.00 0.00 3.91
2449 15071 5.118510 CCAAACTCCAAATACGAAATGTTGC 59.881 40.000 0.00 0.00 0.00 4.17
2450 15072 6.362283 GTCCAAACTCCAAATACGAAATGTTG 59.638 38.462 0.00 0.00 0.00 3.33
2451 15073 6.443792 GTCCAAACTCCAAATACGAAATGTT 58.556 36.000 0.00 0.00 0.00 2.71
2452 15074 5.048294 GGTCCAAACTCCAAATACGAAATGT 60.048 40.000 0.00 0.00 0.00 2.71
2453 15075 5.048364 TGGTCCAAACTCCAAATACGAAATG 60.048 40.000 0.00 0.00 0.00 2.32
2454 15076 5.074115 TGGTCCAAACTCCAAATACGAAAT 58.926 37.500 0.00 0.00 0.00 2.17
2455 15077 4.462133 TGGTCCAAACTCCAAATACGAAA 58.538 39.130 0.00 0.00 0.00 3.46
2456 15078 4.088056 TGGTCCAAACTCCAAATACGAA 57.912 40.909 0.00 0.00 0.00 3.85
2457 15079 3.773418 TGGTCCAAACTCCAAATACGA 57.227 42.857 0.00 0.00 0.00 3.43
2458 15080 3.566322 TGTTGGTCCAAACTCCAAATACG 59.434 43.478 5.69 0.00 43.89 3.06
2459 15081 5.523438 TTGTTGGTCCAAACTCCAAATAC 57.477 39.130 5.69 0.00 43.89 1.89
2460 15082 6.546428 TTTTGTTGGTCCAAACTCCAAATA 57.454 33.333 15.21 7.22 43.89 1.40
2461 15083 5.428184 TTTTGTTGGTCCAAACTCCAAAT 57.572 34.783 15.21 0.00 43.89 2.32
2462 15084 4.891992 TTTTGTTGGTCCAAACTCCAAA 57.108 36.364 5.69 9.68 43.89 3.28
2463 15085 4.528596 TCTTTTTGTTGGTCCAAACTCCAA 59.471 37.500 5.69 3.55 40.77 3.53
2464 15086 4.090090 TCTTTTTGTTGGTCCAAACTCCA 58.910 39.130 5.69 0.00 34.23 3.86
2465 15087 4.729227 TCTTTTTGTTGGTCCAAACTCC 57.271 40.909 5.69 0.00 34.23 3.85
2466 15088 9.406828 GTATATTCTTTTTGTTGGTCCAAACTC 57.593 33.333 5.69 0.00 34.23 3.01
2467 15089 8.919145 TGTATATTCTTTTTGTTGGTCCAAACT 58.081 29.630 5.69 0.00 34.23 2.66
2468 15090 9.705290 ATGTATATTCTTTTTGTTGGTCCAAAC 57.295 29.630 5.69 1.65 34.23 2.93
2488 15110 9.890629 AGCACTATGAGTTGAAGAAAATGTATA 57.109 29.630 0.00 0.00 0.00 1.47
2489 15111 8.798859 AGCACTATGAGTTGAAGAAAATGTAT 57.201 30.769 0.00 0.00 0.00 2.29
2490 15112 9.151471 GTAGCACTATGAGTTGAAGAAAATGTA 57.849 33.333 0.00 0.00 0.00 2.29
2491 15113 7.661437 TGTAGCACTATGAGTTGAAGAAAATGT 59.339 33.333 0.00 0.00 0.00 2.71
2492 15114 8.032952 TGTAGCACTATGAGTTGAAGAAAATG 57.967 34.615 0.00 0.00 0.00 2.32
2493 15115 8.097038 TCTGTAGCACTATGAGTTGAAGAAAAT 58.903 33.333 0.00 0.00 0.00 1.82
2494 15116 7.441836 TCTGTAGCACTATGAGTTGAAGAAAA 58.558 34.615 0.00 0.00 0.00 2.29
2495 15117 6.993079 TCTGTAGCACTATGAGTTGAAGAAA 58.007 36.000 0.00 0.00 0.00 2.52
2496 15118 6.590234 TCTGTAGCACTATGAGTTGAAGAA 57.410 37.500 0.00 0.00 0.00 2.52
2497 15119 6.590234 TTCTGTAGCACTATGAGTTGAAGA 57.410 37.500 0.00 0.00 0.00 2.87
2498 15120 8.976471 CATATTCTGTAGCACTATGAGTTGAAG 58.024 37.037 0.00 0.00 0.00 3.02
2499 15121 8.478066 ACATATTCTGTAGCACTATGAGTTGAA 58.522 33.333 0.00 0.00 35.91 2.69
2500 15122 8.011844 ACATATTCTGTAGCACTATGAGTTGA 57.988 34.615 0.00 0.00 35.91 3.18
2501 15123 8.654230 AACATATTCTGTAGCACTATGAGTTG 57.346 34.615 0.00 0.00 36.98 3.16
2502 15124 8.478066 TGAACATATTCTGTAGCACTATGAGTT 58.522 33.333 0.00 0.00 36.98 3.01
2503 15125 8.011844 TGAACATATTCTGTAGCACTATGAGT 57.988 34.615 0.00 0.00 36.98 3.41
2504 15126 8.140628 ACTGAACATATTCTGTAGCACTATGAG 58.859 37.037 0.00 0.00 43.09 2.90
2505 15127 8.011844 ACTGAACATATTCTGTAGCACTATGA 57.988 34.615 0.00 0.00 43.09 2.15
2506 15128 8.546244 CAACTGAACATATTCTGTAGCACTATG 58.454 37.037 0.00 0.00 43.84 2.23
2507 15129 8.260818 ACAACTGAACATATTCTGTAGCACTAT 58.739 33.333 0.00 0.00 43.84 2.12
2508 15130 7.611770 ACAACTGAACATATTCTGTAGCACTA 58.388 34.615 0.00 0.00 43.84 2.74
2509 15131 6.467677 ACAACTGAACATATTCTGTAGCACT 58.532 36.000 0.00 0.00 43.84 4.40
2510 15132 6.727824 ACAACTGAACATATTCTGTAGCAC 57.272 37.500 0.00 0.00 43.84 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.