Multiple sequence alignment - TraesCS7D01G487800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G487800 chr7D 100.000 5110 0 0 1 5110 597962474 597967583 0.000000e+00 9437.0
1 TraesCS7D01G487800 chr7D 98.159 1575 17 5 1317 2880 570482889 570481316 0.000000e+00 2737.0
2 TraesCS7D01G487800 chr7D 91.045 871 64 4 1315 2181 518104480 518105340 0.000000e+00 1164.0
3 TraesCS7D01G487800 chr7D 83.157 1134 166 17 2878 3998 597570049 597568928 0.000000e+00 1013.0
4 TraesCS7D01G487800 chr7D 79.137 1251 195 40 2878 4110 597654154 597652952 0.000000e+00 804.0
5 TraesCS7D01G487800 chr7D 81.226 1028 160 14 2974 4000 597574871 597573876 0.000000e+00 798.0
6 TraesCS7D01G487800 chr7D 83.974 755 66 18 2164 2877 518105352 518106092 0.000000e+00 673.0
7 TraesCS7D01G487800 chr7D 97.452 157 4 0 146 302 255677162 255677006 8.430000e-68 268.0
8 TraesCS7D01G487800 chr7D 91.525 59 5 0 338 396 597623423 597623365 1.180000e-11 82.4
9 TraesCS7D01G487800 chr7B 97.125 1565 39 6 1317 2877 23077191 23078753 0.000000e+00 2636.0
10 TraesCS7D01G487800 chr7B 90.023 1744 127 27 2878 4606 676210832 676209121 0.000000e+00 2213.0
11 TraesCS7D01G487800 chr7B 88.661 1023 88 12 305 1317 676217781 676216777 0.000000e+00 1221.0
12 TraesCS7D01G487800 chr7B 87.879 1023 96 10 305 1317 676211828 676210824 0.000000e+00 1177.0
13 TraesCS7D01G487800 chr7B 94.935 691 32 3 305 993 676220354 676219665 0.000000e+00 1079.0
14 TraesCS7D01G487800 chr7B 91.842 711 39 7 3433 4133 676215590 676214889 0.000000e+00 974.0
15 TraesCS7D01G487800 chr7B 82.067 1132 173 16 2878 3998 676534755 676533643 0.000000e+00 939.0
16 TraesCS7D01G487800 chr7B 79.752 1131 178 34 2998 4110 676424417 676425514 0.000000e+00 773.0
17 TraesCS7D01G487800 chr7B 96.721 366 12 0 2878 3243 676216785 676216420 1.220000e-170 610.0
18 TraesCS7D01G487800 chr7B 81.700 694 118 8 3313 4000 676452933 676453623 2.060000e-158 569.0
19 TraesCS7D01G487800 chr7B 96.500 200 6 1 3242 3440 676216257 676216058 3.810000e-86 329.0
20 TraesCS7D01G487800 chr7B 81.663 409 55 9 2878 3269 676452526 676452931 6.380000e-84 322.0
21 TraesCS7D01G487800 chr7B 91.111 135 3 3 1027 1152 676219669 676219535 1.890000e-39 174.0
22 TraesCS7D01G487800 chr7B 77.099 131 22 8 2751 2877 614830146 614830272 9.180000e-08 69.4
23 TraesCS7D01G487800 chr1D 98.816 1351 11 3 1531 2880 491867090 491865744 0.000000e+00 2401.0
24 TraesCS7D01G487800 chr1D 97.872 94 2 0 1 94 433100854 433100761 4.090000e-36 163.0
25 TraesCS7D01G487800 chr7A 98.426 1271 18 1 2878 4146 690195597 690194327 0.000000e+00 2235.0
26 TraesCS7D01G487800 chr7A 95.366 928 34 5 4183 5110 690194328 690193410 0.000000e+00 1467.0
27 TraesCS7D01G487800 chr7A 92.299 935 38 15 393 1317 690196499 690195589 0.000000e+00 1297.0
28 TraesCS7D01G487800 chr7A 79.028 1235 192 46 2878 4092 690400005 690401192 0.000000e+00 784.0
29 TraesCS7D01G487800 chr7A 81.273 801 128 17 3321 4110 690412994 690413783 3.360000e-176 628.0
30 TraesCS7D01G487800 chr7A 96.178 157 6 0 147 303 712326172 712326016 1.830000e-64 257.0
31 TraesCS7D01G487800 chr7A 86.709 158 18 3 147 302 96561836 96561992 6.800000e-39 172.0
32 TraesCS7D01G487800 chr7A 97.872 94 2 0 1 94 28120792 28120699 4.090000e-36 163.0
33 TraesCS7D01G487800 chr7A 97.872 94 2 0 1 94 716413881 716413788 4.090000e-36 163.0
34 TraesCS7D01G487800 chr7A 95.960 99 3 1 1 99 7287866 7287963 5.300000e-35 159.0
35 TraesCS7D01G487800 chr5D 86.683 1622 137 23 1317 2877 46605858 46604255 0.000000e+00 1725.0
36 TraesCS7D01G487800 chr5D 89.286 56 6 0 2822 2877 463017957 463017902 2.550000e-08 71.3
37 TraesCS7D01G487800 chr4A 85.337 1630 144 55 1316 2877 721941860 721940258 0.000000e+00 1598.0
38 TraesCS7D01G487800 chr4A 97.872 94 2 0 1 94 742132794 742132887 4.090000e-36 163.0
39 TraesCS7D01G487800 chr5B 85.915 1569 128 29 1317 2824 685672530 685674066 0.000000e+00 1587.0
40 TraesCS7D01G487800 chr3B 86.411 1354 113 17 1317 2616 42349891 42348555 0.000000e+00 1415.0
41 TraesCS7D01G487800 chr3B 96.203 158 6 0 146 303 771052031 771052188 5.080000e-65 259.0
42 TraesCS7D01G487800 chr3B 95.000 160 7 1 147 305 13921403 13921244 3.050000e-62 250.0
43 TraesCS7D01G487800 chr3B 82.528 269 38 6 2614 2877 42347816 42347552 1.430000e-55 228.0
44 TraesCS7D01G487800 chr3B 96.970 99 2 1 1 98 585031626 585031528 1.140000e-36 165.0
45 TraesCS7D01G487800 chrUn 85.148 1185 109 30 1745 2875 18088822 18087651 0.000000e+00 1151.0
46 TraesCS7D01G487800 chrUn 97.872 94 2 0 1 94 71118653 71118746 4.090000e-36 163.0
47 TraesCS7D01G487800 chrUn 95.960 99 3 1 1 98 16446652 16446750 5.300000e-35 159.0
48 TraesCS7D01G487800 chr6A 84.570 1024 92 20 1912 2878 23716412 23717426 0.000000e+00 955.0
49 TraesCS7D01G487800 chr6A 91.435 467 30 5 1317 1782 23715951 23716408 2.600000e-177 632.0
50 TraesCS7D01G487800 chr6A 97.872 94 2 0 1 94 6897580 6897673 4.090000e-36 163.0
51 TraesCS7D01G487800 chr1B 89.736 682 56 7 1316 1996 662639912 662640580 0.000000e+00 859.0
52 TraesCS7D01G487800 chr1B 83.315 905 84 23 2030 2874 662640814 662641711 0.000000e+00 773.0
53 TraesCS7D01G487800 chr2A 96.178 157 6 0 147 303 26840166 26840322 1.830000e-64 257.0
54 TraesCS7D01G487800 chr6D 93.590 156 10 0 147 302 470138653 470138498 3.080000e-57 233.0
55 TraesCS7D01G487800 chr6D 82.857 140 24 0 3000 3139 90347911 90348050 5.370000e-25 126.0
56 TraesCS7D01G487800 chr5A 86.709 158 19 2 147 303 469904263 469904107 1.890000e-39 174.0
57 TraesCS7D01G487800 chr6B 82.692 156 23 3 2985 3139 172368885 172368733 8.920000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G487800 chr7D 597962474 597967583 5109 False 9437.000000 9437 100.000000 1 5110 1 chr7D.!!$F1 5109
1 TraesCS7D01G487800 chr7D 570481316 570482889 1573 True 2737.000000 2737 98.159000 1317 2880 1 chr7D.!!$R2 1563
2 TraesCS7D01G487800 chr7D 518104480 518106092 1612 False 918.500000 1164 87.509500 1315 2877 2 chr7D.!!$F2 1562
3 TraesCS7D01G487800 chr7D 597568928 597574871 5943 True 905.500000 1013 82.191500 2878 4000 2 chr7D.!!$R5 1122
4 TraesCS7D01G487800 chr7D 597652952 597654154 1202 True 804.000000 804 79.137000 2878 4110 1 chr7D.!!$R4 1232
5 TraesCS7D01G487800 chr7B 23077191 23078753 1562 False 2636.000000 2636 97.125000 1317 2877 1 chr7B.!!$F1 1560
6 TraesCS7D01G487800 chr7B 676209121 676220354 11233 True 972.125000 2213 92.209000 305 4606 8 chr7B.!!$R2 4301
7 TraesCS7D01G487800 chr7B 676533643 676534755 1112 True 939.000000 939 82.067000 2878 3998 1 chr7B.!!$R1 1120
8 TraesCS7D01G487800 chr7B 676424417 676425514 1097 False 773.000000 773 79.752000 2998 4110 1 chr7B.!!$F3 1112
9 TraesCS7D01G487800 chr7B 676452526 676453623 1097 False 445.500000 569 81.681500 2878 4000 2 chr7B.!!$F4 1122
10 TraesCS7D01G487800 chr1D 491865744 491867090 1346 True 2401.000000 2401 98.816000 1531 2880 1 chr1D.!!$R2 1349
11 TraesCS7D01G487800 chr7A 690193410 690196499 3089 True 1666.333333 2235 95.363667 393 5110 3 chr7A.!!$R4 4717
12 TraesCS7D01G487800 chr7A 690400005 690401192 1187 False 784.000000 784 79.028000 2878 4092 1 chr7A.!!$F3 1214
13 TraesCS7D01G487800 chr7A 690412994 690413783 789 False 628.000000 628 81.273000 3321 4110 1 chr7A.!!$F4 789
14 TraesCS7D01G487800 chr5D 46604255 46605858 1603 True 1725.000000 1725 86.683000 1317 2877 1 chr5D.!!$R1 1560
15 TraesCS7D01G487800 chr4A 721940258 721941860 1602 True 1598.000000 1598 85.337000 1316 2877 1 chr4A.!!$R1 1561
16 TraesCS7D01G487800 chr5B 685672530 685674066 1536 False 1587.000000 1587 85.915000 1317 2824 1 chr5B.!!$F1 1507
17 TraesCS7D01G487800 chr3B 42347552 42349891 2339 True 821.500000 1415 84.469500 1317 2877 2 chr3B.!!$R3 1560
18 TraesCS7D01G487800 chrUn 18087651 18088822 1171 True 1151.000000 1151 85.148000 1745 2875 1 chrUn.!!$R1 1130
19 TraesCS7D01G487800 chr6A 23715951 23717426 1475 False 793.500000 955 88.002500 1317 2878 2 chr6A.!!$F2 1561
20 TraesCS7D01G487800 chr1B 662639912 662641711 1799 False 816.000000 859 86.525500 1316 2874 2 chr1B.!!$F1 1558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.107654 AGTCATTTCCTACAGCCGGC 60.108 55.0 21.89 21.89 0.0 6.13 F
296 297 0.318699 GTTTTTGGGTCAAGCTCCGC 60.319 55.0 0.00 0.00 0.0 5.54 F
1310 3882 0.546988 AGACCTACTTCCACCACCCC 60.547 60.0 0.00 0.00 0.0 4.95 F
2988 6710 0.386605 CGCGTGCTAAATTTGGTGCA 60.387 50.0 0.00 6.13 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 3724 0.039346 GACCCTAGATTAGCGTCGCC 60.039 60.0 14.86 0.0 0.00 5.54 R
1920 4511 0.178068 ACTCGTTGCCACTGTCACTT 59.822 50.0 0.00 0.0 0.00 3.16 R
3275 7165 0.889994 TGGTGCATGCAGAAATGTCC 59.110 50.0 23.41 17.2 0.00 4.02 R
4767 14462 0.171903 TGGCTTAGTTCCGTCTACGC 59.828 55.0 0.00 0.0 38.18 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.383368 CATCTAGCTATGCAGAGGCC 57.617 55.000 10.92 0.00 40.13 5.19
27 28 2.164865 CTAGCTATGCAGAGGCCGGG 62.165 65.000 10.92 0.00 40.13 5.73
29 30 3.554342 CTATGCAGAGGCCGGGCT 61.554 66.667 33.40 33.40 40.13 5.19
30 31 3.089874 TATGCAGAGGCCGGGCTT 61.090 61.111 33.28 18.37 40.13 4.35
31 32 2.615227 CTATGCAGAGGCCGGGCTTT 62.615 60.000 33.28 24.87 40.13 3.51
33 34 4.416738 GCAGAGGCCGGGCTTTCT 62.417 66.667 33.28 22.65 0.00 2.52
34 35 2.352805 CAGAGGCCGGGCTTTCTT 59.647 61.111 33.28 15.22 0.00 2.52
37 38 1.303317 GAGGCCGGGCTTTCTTTCA 60.303 57.895 33.28 0.00 0.00 2.69
38 39 0.893727 GAGGCCGGGCTTTCTTTCAA 60.894 55.000 33.28 0.00 0.00 2.69
40 41 1.005450 AGGCCGGGCTTTCTTTCAATA 59.995 47.619 27.45 0.00 0.00 1.90
41 42 1.134367 GGCCGGGCTTTCTTTCAATAC 59.866 52.381 22.87 0.00 0.00 1.89
43 44 2.352388 CCGGGCTTTCTTTCAATACGA 58.648 47.619 0.00 0.00 0.00 3.43
44 45 2.943033 CCGGGCTTTCTTTCAATACGAT 59.057 45.455 0.00 0.00 0.00 3.73
47 48 4.142687 CGGGCTTTCTTTCAATACGATTGT 60.143 41.667 0.00 0.00 0.00 2.71
48 49 5.064198 CGGGCTTTCTTTCAATACGATTGTA 59.936 40.000 0.00 0.00 34.45 2.41
49 50 6.238374 CGGGCTTTCTTTCAATACGATTGTAT 60.238 38.462 0.00 0.00 43.14 2.29
51 52 7.201696 GGGCTTTCTTTCAATACGATTGTATCA 60.202 37.037 6.06 0.00 40.42 2.15
52 53 7.640240 GGCTTTCTTTCAATACGATTGTATCAC 59.360 37.037 6.06 0.00 40.42 3.06
55 56 8.420374 TTCTTTCAATACGATTGTATCACCTC 57.580 34.615 6.06 0.00 40.42 3.85
56 57 6.695713 TCTTTCAATACGATTGTATCACCTCG 59.304 38.462 6.06 0.00 40.42 4.63
57 58 5.761165 TCAATACGATTGTATCACCTCGA 57.239 39.130 6.06 0.00 40.42 4.04
58 59 6.327279 TCAATACGATTGTATCACCTCGAT 57.673 37.500 6.06 0.00 40.42 3.59
59 60 7.443259 TCAATACGATTGTATCACCTCGATA 57.557 36.000 6.06 0.00 40.42 2.92
60 61 8.051901 TCAATACGATTGTATCACCTCGATAT 57.948 34.615 6.06 0.00 40.42 1.63
61 62 9.169592 TCAATACGATTGTATCACCTCGATATA 57.830 33.333 6.06 0.00 40.42 0.86
62 63 9.952188 CAATACGATTGTATCACCTCGATATAT 57.048 33.333 6.06 0.00 40.42 0.86
64 65 7.867305 ACGATTGTATCACCTCGATATATCT 57.133 36.000 10.93 0.00 38.85 1.98
65 66 8.959705 ACGATTGTATCACCTCGATATATCTA 57.040 34.615 10.93 0.00 38.85 1.98
134 135 9.692749 ATATGTAACATAATTCATCTTCGACGT 57.307 29.630 0.00 0.00 0.00 4.34
135 136 7.216920 TGTAACATAATTCATCTTCGACGTG 57.783 36.000 0.00 0.00 0.00 4.49
136 137 6.809689 TGTAACATAATTCATCTTCGACGTGT 59.190 34.615 0.00 0.00 0.00 4.49
137 138 6.721571 AACATAATTCATCTTCGACGTGTT 57.278 33.333 0.00 0.00 0.00 3.32
149 150 4.012554 CGTGTTCGTGTGAGCAGT 57.987 55.556 0.00 0.00 35.89 4.40
150 151 1.559814 CGTGTTCGTGTGAGCAGTG 59.440 57.895 0.00 0.00 35.89 3.66
152 153 1.887242 TGTTCGTGTGAGCAGTGGC 60.887 57.895 0.00 0.00 41.61 5.01
204 205 2.996734 CCCAGCCCATGCGGTTTT 60.997 61.111 2.68 0.00 44.33 2.43
205 206 2.573340 CCAGCCCATGCGGTTTTC 59.427 61.111 2.68 0.00 44.33 2.29
207 208 1.213537 CAGCCCATGCGGTTTTCTG 59.786 57.895 2.68 0.00 44.33 3.02
222 223 5.810587 CGGTTTTCTGCAGTGTATATGTAGT 59.189 40.000 14.67 0.00 32.82 2.73
223 224 6.312918 CGGTTTTCTGCAGTGTATATGTAGTT 59.687 38.462 14.67 0.00 32.82 2.24
224 225 7.148474 CGGTTTTCTGCAGTGTATATGTAGTTT 60.148 37.037 14.67 0.00 32.82 2.66
225 226 8.512138 GGTTTTCTGCAGTGTATATGTAGTTTT 58.488 33.333 14.67 0.00 32.82 2.43
227 228 7.609760 TTCTGCAGTGTATATGTAGTTTTGG 57.390 36.000 14.67 0.00 32.82 3.28
228 229 6.112734 TCTGCAGTGTATATGTAGTTTTGGG 58.887 40.000 14.67 0.00 32.82 4.12
229 230 4.638421 TGCAGTGTATATGTAGTTTTGGGC 59.362 41.667 0.00 0.00 0.00 5.36
230 231 4.036380 GCAGTGTATATGTAGTTTTGGGCC 59.964 45.833 0.00 0.00 0.00 5.80
231 232 5.189928 CAGTGTATATGTAGTTTTGGGCCA 58.810 41.667 0.00 0.00 0.00 5.36
233 234 5.827797 AGTGTATATGTAGTTTTGGGCCATG 59.172 40.000 7.26 0.00 0.00 3.66
234 235 5.825679 GTGTATATGTAGTTTTGGGCCATGA 59.174 40.000 7.26 0.00 0.00 3.07
235 236 6.320164 GTGTATATGTAGTTTTGGGCCATGAA 59.680 38.462 7.26 2.36 0.00 2.57
236 237 6.892456 TGTATATGTAGTTTTGGGCCATGAAA 59.108 34.615 7.26 2.48 0.00 2.69
237 238 4.535526 ATGTAGTTTTGGGCCATGAAAC 57.464 40.909 21.07 21.07 34.37 2.78
239 240 3.900601 TGTAGTTTTGGGCCATGAAACAT 59.099 39.130 27.13 17.70 36.11 2.71
241 242 5.540337 TGTAGTTTTGGGCCATGAAACATAA 59.460 36.000 27.13 14.47 36.11 1.90
242 243 5.760484 AGTTTTGGGCCATGAAACATAAT 57.240 34.783 27.13 10.67 36.11 1.28
243 244 5.733676 AGTTTTGGGCCATGAAACATAATC 58.266 37.500 27.13 9.18 36.11 1.75
244 245 4.751767 TTTGGGCCATGAAACATAATCC 57.248 40.909 7.26 0.00 0.00 3.01
245 246 2.676748 TGGGCCATGAAACATAATCCC 58.323 47.619 0.00 0.00 0.00 3.85
246 247 2.023598 TGGGCCATGAAACATAATCCCA 60.024 45.455 0.00 11.10 39.96 4.37
247 248 3.037549 GGGCCATGAAACATAATCCCAA 58.962 45.455 4.39 0.00 32.89 4.12
250 251 5.047092 GGGCCATGAAACATAATCCCAATAG 60.047 44.000 4.39 0.00 32.89 1.73
251 252 5.539955 GGCCATGAAACATAATCCCAATAGT 59.460 40.000 0.00 0.00 0.00 2.12
252 253 6.294731 GGCCATGAAACATAATCCCAATAGTC 60.295 42.308 0.00 0.00 0.00 2.59
253 254 6.265196 GCCATGAAACATAATCCCAATAGTCA 59.735 38.462 0.00 0.00 0.00 3.41
254 255 7.039504 GCCATGAAACATAATCCCAATAGTCAT 60.040 37.037 0.00 0.00 0.00 3.06
258 259 8.912988 TGAAACATAATCCCAATAGTCATTTCC 58.087 33.333 0.00 0.00 0.00 3.13
259 260 9.136323 GAAACATAATCCCAATAGTCATTTCCT 57.864 33.333 0.00 0.00 0.00 3.36
261 262 9.574516 AACATAATCCCAATAGTCATTTCCTAC 57.425 33.333 0.00 0.00 0.00 3.18
262 263 8.723365 ACATAATCCCAATAGTCATTTCCTACA 58.277 33.333 0.00 0.00 0.00 2.74
263 264 9.224267 CATAATCCCAATAGTCATTTCCTACAG 57.776 37.037 0.00 0.00 0.00 2.74
264 265 5.036117 TCCCAATAGTCATTTCCTACAGC 57.964 43.478 0.00 0.00 0.00 4.40
265 266 4.137543 CCCAATAGTCATTTCCTACAGCC 58.862 47.826 0.00 0.00 0.00 4.85
266 267 3.809832 CCAATAGTCATTTCCTACAGCCG 59.190 47.826 0.00 0.00 0.00 5.52
267 268 3.753294 ATAGTCATTTCCTACAGCCGG 57.247 47.619 0.00 0.00 0.00 6.13
268 269 0.107654 AGTCATTTCCTACAGCCGGC 60.108 55.000 21.89 21.89 0.00 6.13
269 270 1.095807 GTCATTTCCTACAGCCGGCC 61.096 60.000 26.15 5.07 0.00 6.13
270 271 1.823899 CATTTCCTACAGCCGGCCC 60.824 63.158 26.15 0.00 0.00 5.80
271 272 3.400599 ATTTCCTACAGCCGGCCCG 62.401 63.158 26.15 18.19 0.00 6.13
282 283 2.197605 CCGGCCCGTCCAAGTTTTT 61.198 57.895 0.85 0.00 34.01 1.94
283 284 1.007849 CGGCCCGTCCAAGTTTTTG 60.008 57.895 0.00 0.00 34.01 2.44
294 295 3.097877 CAAGTTTTTGGGTCAAGCTCC 57.902 47.619 0.00 0.00 0.00 4.70
295 296 1.318576 AGTTTTTGGGTCAAGCTCCG 58.681 50.000 0.00 0.00 0.00 4.63
296 297 0.318699 GTTTTTGGGTCAAGCTCCGC 60.319 55.000 0.00 0.00 0.00 5.54
297 298 1.460273 TTTTTGGGTCAAGCTCCGCC 61.460 55.000 0.00 0.00 0.00 6.13
298 299 2.632602 TTTTGGGTCAAGCTCCGCCA 62.633 55.000 0.00 0.00 0.00 5.69
300 301 4.021925 GGGTCAAGCTCCGCCACT 62.022 66.667 0.00 0.00 0.00 4.00
301 302 2.743928 GGTCAAGCTCCGCCACTG 60.744 66.667 0.00 0.00 0.00 3.66
318 319 1.876453 CTGCGTGTGAGTACGTGCAC 61.876 60.000 6.82 6.82 45.36 4.57
319 320 1.947146 GCGTGTGAGTACGTGCACA 60.947 57.895 18.64 14.16 45.36 4.57
359 360 8.715191 AATTATGAGATGAGGCGATTAATCTC 57.285 34.615 13.45 5.39 43.47 2.75
738 742 2.114616 AGTCAATAGGGAGCTGACTGG 58.885 52.381 0.00 0.00 46.17 4.00
906 3473 6.090898 GTGTGGTAGTAAGATAAACACTGCTG 59.909 42.308 0.00 0.00 34.91 4.41
956 3525 5.454554 ACGTCTTGATATACACAATTCGACG 59.545 40.000 20.11 20.11 42.86 5.12
1002 3571 3.308402 GGATGAAGGGAACTCATGTGGAA 60.308 47.826 0.00 0.00 42.68 3.53
1003 3572 4.530875 GATGAAGGGAACTCATGTGGAAT 58.469 43.478 0.00 0.00 42.68 3.01
1150 3719 2.470821 CGTCCTCTTCGTCTTTGTTGT 58.529 47.619 0.00 0.00 0.00 3.32
1152 3721 3.454375 GTCCTCTTCGTCTTTGTTGTCA 58.546 45.455 0.00 0.00 0.00 3.58
1153 3722 3.245519 GTCCTCTTCGTCTTTGTTGTCAC 59.754 47.826 0.00 0.00 0.00 3.67
1154 3723 2.544267 CCTCTTCGTCTTTGTTGTCACC 59.456 50.000 0.00 0.00 0.00 4.02
1155 3724 2.198406 TCTTCGTCTTTGTTGTCACCG 58.802 47.619 0.00 0.00 0.00 4.94
1156 3725 1.260561 CTTCGTCTTTGTTGTCACCGG 59.739 52.381 0.00 0.00 0.00 5.28
1157 3726 1.155424 TCGTCTTTGTTGTCACCGGC 61.155 55.000 0.00 0.00 0.00 6.13
1158 3727 1.278637 GTCTTTGTTGTCACCGGCG 59.721 57.895 0.00 0.00 0.00 6.46
1257 3829 2.564771 CATACACCATCCGCAACAGAT 58.435 47.619 0.00 0.00 0.00 2.90
1308 3880 1.826096 GAGAGACCTACTTCCACCACC 59.174 57.143 0.00 0.00 0.00 4.61
1310 3882 0.546988 AGACCTACTTCCACCACCCC 60.547 60.000 0.00 0.00 0.00 4.95
1312 3884 1.131928 ACCTACTTCCACCACCCCAC 61.132 60.000 0.00 0.00 0.00 4.61
1313 3885 1.295423 CTACTTCCACCACCCCACG 59.705 63.158 0.00 0.00 0.00 4.94
1349 3923 3.763897 CCAGAATAAAAACTGACTGGGGG 59.236 47.826 0.00 0.00 40.50 5.40
1351 3925 5.076873 CAGAATAAAAACTGACTGGGGGAA 58.923 41.667 0.00 0.00 36.38 3.97
1352 3926 5.716703 CAGAATAAAAACTGACTGGGGGAAT 59.283 40.000 0.00 0.00 36.38 3.01
1437 4011 9.642327 CTCTCTCTGATCCATATTATTTGTCAG 57.358 37.037 0.00 0.00 34.45 3.51
1920 4511 6.976088 TCATAGCCGAAAAACATTTCTCAAA 58.024 32.000 0.48 0.00 0.00 2.69
2697 6364 3.550950 TTTTCATGCAGCGAAAATCGA 57.449 38.095 18.13 0.00 43.74 3.59
2988 6710 0.386605 CGCGTGCTAAATTTGGTGCA 60.387 50.000 0.00 6.13 0.00 4.57
4185 13874 5.249852 TGCACTAATATATCCCCACCTAACC 59.750 44.000 0.00 0.00 0.00 2.85
4187 13876 6.030082 CACTAATATATCCCCACCTAACCCT 58.970 44.000 0.00 0.00 0.00 4.34
4188 13877 7.194050 CACTAATATATCCCCACCTAACCCTA 58.806 42.308 0.00 0.00 0.00 3.53
4318 14008 1.379309 GCAGGAAAATACCCCCGCA 60.379 57.895 0.00 0.00 0.00 5.69
4319 14009 1.384222 GCAGGAAAATACCCCCGCAG 61.384 60.000 0.00 0.00 0.00 5.18
4390 14085 1.656652 CACCACGCCTAGATTTGAGG 58.343 55.000 0.00 0.00 37.12 3.86
4513 14208 3.914426 AGCCAGTTATAAGACCCACAG 57.086 47.619 0.00 0.00 0.00 3.66
4541 14236 6.742109 ACAGAAAGAAATCCAATGTTGTGAG 58.258 36.000 0.00 0.00 0.00 3.51
4598 14293 3.454858 AGATTTAGACTTGAGAGGGGCA 58.545 45.455 0.00 0.00 0.00 5.36
4651 14346 6.350110 GCCAAGCAATAATCACTACAGGAAAA 60.350 38.462 0.00 0.00 0.00 2.29
4666 14361 8.832735 ACTACAGGAAAATCATAAGTTCCCTAA 58.167 33.333 0.00 0.00 41.55 2.69
4685 14380 7.355101 TCCCTAATATCTGACTATAAGCCGAT 58.645 38.462 0.00 0.00 0.00 4.18
4747 14442 4.379082 CGAGTACCAAACCCTAAAATGCAC 60.379 45.833 0.00 0.00 0.00 4.57
4749 14444 1.616374 ACCAAACCCTAAAATGCACGG 59.384 47.619 0.00 0.00 0.00 4.94
4776 14471 1.429825 CTGACCTCAGCGTAGACGG 59.570 63.158 3.97 0.00 40.23 4.79
4808 14503 5.182760 CCAAGAATCAGGAAAAGAACCTCAG 59.817 44.000 0.00 0.00 35.35 3.35
4809 14504 5.574970 AGAATCAGGAAAAGAACCTCAGT 57.425 39.130 0.00 0.00 35.35 3.41
4866 14561 3.430333 CTCGGCTTAGAGTTCCTTCTC 57.570 52.381 0.00 0.00 33.75 2.87
4903 14598 0.308684 GTGGCCATCACATATGTGCG 59.691 55.000 27.71 20.58 45.39 5.34
4960 14655 6.075918 GCTTGAAAGATGCGTGACATATATG 58.924 40.000 11.29 11.29 39.84 1.78
4961 14656 6.544038 TTGAAAGATGCGTGACATATATGG 57.456 37.500 16.96 0.35 39.84 2.74
5020 14715 6.252228 GCTTACACTTTGCATCTTATTTGCTC 59.748 38.462 0.00 0.00 40.77 4.26
5025 14720 4.365899 TTGCATCTTATTTGCTCAGCAG 57.634 40.909 0.00 0.00 40.61 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.403914 CGGCCTCTGCATAGCTAGATG 60.404 57.143 0.00 0.00 40.13 2.90
8 9 1.291588 CCGGCCTCTGCATAGCTAG 59.708 63.158 0.00 0.00 40.13 3.42
10 11 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
12 13 2.615227 AAAGCCCGGCCTCTGCATAG 62.615 60.000 5.55 0.00 40.13 2.23
13 14 2.608970 GAAAGCCCGGCCTCTGCATA 62.609 60.000 5.55 0.00 40.13 3.14
14 15 4.052518 AAAGCCCGGCCTCTGCAT 62.053 61.111 5.55 0.00 40.13 3.96
15 16 4.722700 GAAAGCCCGGCCTCTGCA 62.723 66.667 5.55 0.00 40.13 4.41
16 17 3.927481 AAGAAAGCCCGGCCTCTGC 62.927 63.158 5.55 0.00 0.00 4.26
17 18 1.303643 AAAGAAAGCCCGGCCTCTG 60.304 57.895 5.55 0.00 0.00 3.35
19 20 0.893727 TTGAAAGAAAGCCCGGCCTC 60.894 55.000 5.55 3.17 0.00 4.70
20 21 0.251787 ATTGAAAGAAAGCCCGGCCT 60.252 50.000 5.55 0.00 0.00 5.19
21 22 1.134367 GTATTGAAAGAAAGCCCGGCC 59.866 52.381 5.55 0.00 0.00 6.13
22 23 1.202143 CGTATTGAAAGAAAGCCCGGC 60.202 52.381 0.00 0.00 0.00 6.13
24 25 4.142687 ACAATCGTATTGAAAGAAAGCCCG 60.143 41.667 12.53 0.00 0.00 6.13
27 28 7.640240 GGTGATACAATCGTATTGAAAGAAAGC 59.360 37.037 12.53 0.00 38.48 3.51
28 29 8.883731 AGGTGATACAATCGTATTGAAAGAAAG 58.116 33.333 12.53 0.00 38.48 2.62
29 30 8.786826 AGGTGATACAATCGTATTGAAAGAAA 57.213 30.769 12.53 0.00 38.48 2.52
30 31 7.222031 CGAGGTGATACAATCGTATTGAAAGAA 59.778 37.037 12.53 0.00 38.48 2.52
31 32 6.695713 CGAGGTGATACAATCGTATTGAAAGA 59.304 38.462 12.53 0.00 38.48 2.52
33 34 6.566141 TCGAGGTGATACAATCGTATTGAAA 58.434 36.000 12.53 3.55 38.48 2.69
34 35 6.139048 TCGAGGTGATACAATCGTATTGAA 57.861 37.500 12.53 0.00 38.48 2.69
38 39 9.562408 AGATATATCGAGGTGATACAATCGTAT 57.438 33.333 7.08 0.00 42.24 3.06
40 41 7.867305 AGATATATCGAGGTGATACAATCGT 57.133 36.000 7.08 0.00 42.24 3.73
131 132 1.141019 ACTGCTCACACGAACACGT 59.859 52.632 0.00 0.00 41.02 4.49
132 133 1.559814 CACTGCTCACACGAACACG 59.440 57.895 0.00 0.00 0.00 4.49
133 134 1.934463 CCACTGCTCACACGAACAC 59.066 57.895 0.00 0.00 0.00 3.32
134 135 1.887242 GCCACTGCTCACACGAACA 60.887 57.895 0.00 0.00 33.53 3.18
135 136 2.939022 GCCACTGCTCACACGAAC 59.061 61.111 0.00 0.00 33.53 3.95
136 137 2.661537 CGCCACTGCTCACACGAA 60.662 61.111 0.00 0.00 34.43 3.85
137 138 4.662961 CCGCCACTGCTCACACGA 62.663 66.667 0.00 0.00 34.43 4.35
139 140 2.740055 CTCCGCCACTGCTCACAC 60.740 66.667 0.00 0.00 34.43 3.82
140 141 4.687215 GCTCCGCCACTGCTCACA 62.687 66.667 0.00 0.00 34.43 3.58
141 142 3.006756 TAGCTCCGCCACTGCTCAC 62.007 63.158 0.00 0.00 38.15 3.51
142 143 2.679996 TAGCTCCGCCACTGCTCA 60.680 61.111 0.00 0.00 38.15 4.26
143 144 2.202810 GTAGCTCCGCCACTGCTC 60.203 66.667 0.00 0.00 38.15 4.26
144 145 4.135153 CGTAGCTCCGCCACTGCT 62.135 66.667 0.00 0.00 40.43 4.24
148 149 4.752879 TTGCCGTAGCTCCGCCAC 62.753 66.667 0.00 0.00 40.80 5.01
149 150 4.451150 CTTGCCGTAGCTCCGCCA 62.451 66.667 0.00 0.00 40.80 5.69
188 189 1.978617 AGAAAACCGCATGGGCTGG 60.979 57.895 3.80 0.00 40.62 4.85
189 190 1.213537 CAGAAAACCGCATGGGCTG 59.786 57.895 3.80 2.21 40.62 4.85
190 191 2.639327 GCAGAAAACCGCATGGGCT 61.639 57.895 3.80 0.00 40.62 5.19
192 193 1.213537 CTGCAGAAAACCGCATGGG 59.786 57.895 8.42 2.06 40.75 4.00
193 194 0.387622 CACTGCAGAAAACCGCATGG 60.388 55.000 23.35 0.00 37.54 3.66
196 197 1.890876 ATACACTGCAGAAAACCGCA 58.109 45.000 23.35 0.00 36.52 5.69
197 198 3.374058 ACATATACACTGCAGAAAACCGC 59.626 43.478 23.35 0.00 0.00 5.68
198 199 5.810587 ACTACATATACACTGCAGAAAACCG 59.189 40.000 23.35 5.46 0.00 4.44
201 202 8.511321 CCAAAACTACATATACACTGCAGAAAA 58.489 33.333 23.35 4.81 0.00 2.29
203 204 6.597672 CCCAAAACTACATATACACTGCAGAA 59.402 38.462 23.35 5.62 0.00 3.02
204 205 6.112734 CCCAAAACTACATATACACTGCAGA 58.887 40.000 23.35 0.00 0.00 4.26
205 206 5.220854 GCCCAAAACTACATATACACTGCAG 60.221 44.000 13.48 13.48 0.00 4.41
207 208 4.036380 GGCCCAAAACTACATATACACTGC 59.964 45.833 0.00 0.00 0.00 4.40
210 211 5.825679 TCATGGCCCAAAACTACATATACAC 59.174 40.000 0.00 0.00 0.00 2.90
211 212 6.007485 TCATGGCCCAAAACTACATATACA 57.993 37.500 0.00 0.00 0.00 2.29
212 213 6.952773 TTCATGGCCCAAAACTACATATAC 57.047 37.500 0.00 0.00 0.00 1.47
213 214 6.892456 TGTTTCATGGCCCAAAACTACATATA 59.108 34.615 19.43 2.22 34.69 0.86
215 216 5.080337 TGTTTCATGGCCCAAAACTACATA 58.920 37.500 19.43 3.28 34.69 2.29
216 217 3.900601 TGTTTCATGGCCCAAAACTACAT 59.099 39.130 19.43 0.00 34.69 2.29
217 218 3.300388 TGTTTCATGGCCCAAAACTACA 58.700 40.909 19.43 6.30 34.69 2.74
218 219 4.535526 ATGTTTCATGGCCCAAAACTAC 57.464 40.909 19.43 4.17 34.69 2.73
220 221 5.338300 GGATTATGTTTCATGGCCCAAAACT 60.338 40.000 19.43 11.25 34.69 2.66
222 223 4.080638 GGGATTATGTTTCATGGCCCAAAA 60.081 41.667 0.00 0.00 34.47 2.44
223 224 3.454082 GGGATTATGTTTCATGGCCCAAA 59.546 43.478 0.00 0.00 34.47 3.28
224 225 3.037549 GGGATTATGTTTCATGGCCCAA 58.962 45.455 0.00 0.00 34.47 4.12
225 226 2.023598 TGGGATTATGTTTCATGGCCCA 60.024 45.455 0.00 0.00 41.75 5.36
227 228 4.961438 ATTGGGATTATGTTTCATGGCC 57.039 40.909 0.00 0.00 0.00 5.36
228 229 6.265196 TGACTATTGGGATTATGTTTCATGGC 59.735 38.462 0.00 0.00 0.00 4.40
229 230 7.822161 TGACTATTGGGATTATGTTTCATGG 57.178 36.000 0.00 0.00 0.00 3.66
233 234 9.136323 AGGAAATGACTATTGGGATTATGTTTC 57.864 33.333 0.00 0.00 0.00 2.78
235 236 9.574516 GTAGGAAATGACTATTGGGATTATGTT 57.425 33.333 0.00 0.00 0.00 2.71
236 237 8.723365 TGTAGGAAATGACTATTGGGATTATGT 58.277 33.333 0.00 0.00 0.00 2.29
237 238 9.224267 CTGTAGGAAATGACTATTGGGATTATG 57.776 37.037 0.00 0.00 0.00 1.90
239 240 7.224297 GCTGTAGGAAATGACTATTGGGATTA 58.776 38.462 0.00 0.00 0.00 1.75
241 242 5.456763 GGCTGTAGGAAATGACTATTGGGAT 60.457 44.000 0.00 0.00 0.00 3.85
242 243 4.141482 GGCTGTAGGAAATGACTATTGGGA 60.141 45.833 0.00 0.00 0.00 4.37
243 244 4.137543 GGCTGTAGGAAATGACTATTGGG 58.862 47.826 0.00 0.00 0.00 4.12
244 245 3.809832 CGGCTGTAGGAAATGACTATTGG 59.190 47.826 0.00 0.00 0.00 3.16
245 246 3.809832 CCGGCTGTAGGAAATGACTATTG 59.190 47.826 0.00 0.00 0.00 1.90
246 247 3.744530 GCCGGCTGTAGGAAATGACTATT 60.745 47.826 22.15 0.00 0.00 1.73
247 248 2.224305 GCCGGCTGTAGGAAATGACTAT 60.224 50.000 22.15 0.00 0.00 2.12
250 251 1.095807 GGCCGGCTGTAGGAAATGAC 61.096 60.000 28.56 0.00 0.00 3.06
251 252 1.223487 GGCCGGCTGTAGGAAATGA 59.777 57.895 28.56 0.00 0.00 2.57
252 253 1.823899 GGGCCGGCTGTAGGAAATG 60.824 63.158 28.56 0.00 0.00 2.32
253 254 2.595655 GGGCCGGCTGTAGGAAAT 59.404 61.111 28.56 0.00 0.00 2.17
254 255 4.090588 CGGGCCGGCTGTAGGAAA 62.091 66.667 28.56 0.00 0.00 3.13
264 265 2.197605 AAAAACTTGGACGGGCCGG 61.198 57.895 31.78 14.51 40.66 6.13
265 266 1.007849 CAAAAACTTGGACGGGCCG 60.008 57.895 27.06 27.06 40.66 6.13
266 267 1.365999 CCAAAAACTTGGACGGGCC 59.634 57.895 0.00 0.00 44.82 5.80
267 268 1.365999 CCCAAAAACTTGGACGGGC 59.634 57.895 5.45 0.00 44.82 6.13
268 269 0.671796 GACCCAAAAACTTGGACGGG 59.328 55.000 5.45 0.00 44.82 5.28
269 270 1.394618 TGACCCAAAAACTTGGACGG 58.605 50.000 5.45 0.00 44.82 4.79
270 271 2.798145 GCTTGACCCAAAAACTTGGACG 60.798 50.000 5.45 0.00 44.82 4.79
271 272 2.430694 AGCTTGACCCAAAAACTTGGAC 59.569 45.455 5.45 0.82 44.82 4.02
273 274 2.224042 GGAGCTTGACCCAAAAACTTGG 60.224 50.000 0.00 0.00 41.72 3.61
274 275 2.543653 CGGAGCTTGACCCAAAAACTTG 60.544 50.000 0.00 0.00 0.00 3.16
275 276 1.681264 CGGAGCTTGACCCAAAAACTT 59.319 47.619 0.00 0.00 0.00 2.66
276 277 1.318576 CGGAGCTTGACCCAAAAACT 58.681 50.000 0.00 0.00 0.00 2.66
277 278 3.865700 CGGAGCTTGACCCAAAAAC 57.134 52.632 0.00 0.00 0.00 2.43
298 299 1.660575 GCACGTACTCACACGCAGT 60.661 57.895 0.00 0.00 45.77 4.40
300 301 1.947146 GTGCACGTACTCACACGCA 60.947 57.895 0.00 0.04 45.77 5.24
301 302 1.947146 TGTGCACGTACTCACACGC 60.947 57.895 13.13 0.00 45.77 5.34
318 319 9.730705 ATCTCATAATTATGGTACCATCTTGTG 57.269 33.333 30.63 27.31 37.82 3.33
319 320 9.730705 CATCTCATAATTATGGTACCATCTTGT 57.269 33.333 30.63 19.25 37.82 3.16
730 734 2.295885 CCCATCTGATTTCCAGTCAGC 58.704 52.381 0.00 0.00 42.17 4.26
738 742 6.769822 CACTATATATGGGCCCATCTGATTTC 59.230 42.308 40.77 0.00 37.82 2.17
805 810 4.183865 TGACTTCTATCCAAATGCAGTCG 58.816 43.478 0.00 0.00 33.33 4.18
884 3451 6.599356 TCAGCAGTGTTTATCTTACTACCA 57.401 37.500 0.00 0.00 0.00 3.25
934 3503 5.332355 GCCGTCGAATTGTGTATATCAAGAC 60.332 44.000 0.00 0.00 0.00 3.01
956 3525 6.370718 CCCCATTTATAGTAGAACGTTATGCC 59.629 42.308 5.52 0.00 0.00 4.40
1002 3571 9.060347 TCCAGATCTACGTTTCGTTTAGTATAT 57.940 33.333 0.00 0.00 41.54 0.86
1003 3572 8.437360 TCCAGATCTACGTTTCGTTTAGTATA 57.563 34.615 0.00 0.00 41.54 1.47
1150 3719 1.096967 TAGATTAGCGTCGCCGGTGA 61.097 55.000 15.21 15.21 45.76 4.02
1153 3722 1.081376 CCTAGATTAGCGTCGCCGG 60.081 63.158 14.86 0.00 33.68 6.13
1154 3723 1.081376 CCCTAGATTAGCGTCGCCG 60.081 63.158 14.86 0.00 37.07 6.46
1155 3724 0.039346 GACCCTAGATTAGCGTCGCC 60.039 60.000 14.86 0.00 0.00 5.54
1156 3725 0.385723 CGACCCTAGATTAGCGTCGC 60.386 60.000 9.80 9.80 46.03 5.19
1157 3726 3.749936 CGACCCTAGATTAGCGTCG 57.250 57.895 8.38 8.38 46.40 5.12
1158 3727 1.674962 ACACGACCCTAGATTAGCGTC 59.325 52.381 0.00 0.00 31.81 5.19
1164 3736 0.537188 CAGCCACACGACCCTAGATT 59.463 55.000 0.00 0.00 0.00 2.40
1178 3750 0.250234 AGATACGCTTGAAGCAGCCA 59.750 50.000 18.22 0.00 42.58 4.75
1352 3926 9.691362 GCCTTTGTAAGTTTTCTTATTGATGAA 57.309 29.630 0.00 0.00 43.18 2.57
1437 4011 3.466836 TCCATATTGATTGTCGCTCACC 58.533 45.455 0.00 0.00 0.00 4.02
1526 4106 5.366477 TCATGGCTCTGTTGGATGAAGTATA 59.634 40.000 0.00 0.00 0.00 1.47
1920 4511 0.178068 ACTCGTTGCCACTGTCACTT 59.822 50.000 0.00 0.00 0.00 3.16
2338 5247 5.754406 TGTTTCCTGTCAAATCAAATGCAAG 59.246 36.000 0.00 0.00 0.00 4.01
2697 6364 1.524002 CAGTCGTGCCATGGAGGAT 59.476 57.895 18.40 0.00 41.22 3.24
2988 6710 2.923605 GCTTGCGCTGACAAAACATCAT 60.924 45.455 9.73 0.00 0.00 2.45
3275 7165 0.889994 TGGTGCATGCAGAAATGTCC 59.110 50.000 23.41 17.20 0.00 4.02
3851 13526 2.548295 GGCAAACCTTCGCGTTCCA 61.548 57.895 5.77 0.00 0.00 3.53
4155 13844 1.659098 GGATATATTAGTGCACGCGCC 59.341 52.381 12.01 0.00 37.32 6.53
4156 13845 1.659098 GGGATATATTAGTGCACGCGC 59.341 52.381 12.01 0.00 39.24 6.86
4185 13874 3.722147 CTGGCACTGCAACTATACTAGG 58.278 50.000 2.82 0.00 0.00 3.02
4295 13985 2.165641 CGGGGGTATTTTCCTGCTTTTC 59.834 50.000 0.00 0.00 0.00 2.29
4301 13991 0.254747 TCTGCGGGGGTATTTTCCTG 59.745 55.000 0.00 0.00 0.00 3.86
4390 14085 8.805175 GGTATAGAAGAATAGTTCCTAGGTTCC 58.195 40.741 9.08 0.00 0.00 3.62
4513 14208 8.330302 CACAACATTGGATTTCTTTCTGTTTTC 58.670 33.333 0.00 0.00 0.00 2.29
4541 14236 3.867493 GCCTACGTTTATCACCCAGTAAC 59.133 47.826 0.00 0.00 0.00 2.50
4685 14380 3.998341 GCAGAGTACCGGTGAAATAACAA 59.002 43.478 19.93 0.00 0.00 2.83
4747 14442 2.002586 CTGAGGTCAGTATTTGTGCCG 58.997 52.381 0.00 0.00 39.09 5.69
4749 14444 1.394917 CGCTGAGGTCAGTATTTGTGC 59.605 52.381 8.74 0.00 45.45 4.57
4767 14462 0.171903 TGGCTTAGTTCCGTCTACGC 59.828 55.000 0.00 0.00 38.18 4.42
4776 14471 6.431234 TCTTTTCCTGATTCTTGGCTTAGTTC 59.569 38.462 0.00 0.00 0.00 3.01
4808 14503 8.794406 CAATATGCCGAGTGTTTTTATGTAAAC 58.206 33.333 0.00 0.00 38.26 2.01
4809 14504 8.516234 ACAATATGCCGAGTGTTTTTATGTAAA 58.484 29.630 0.00 0.00 0.00 2.01
4866 14561 3.255725 CCACATGGCAATAACTTTGCTG 58.744 45.455 9.86 4.56 44.36 4.41
4960 14655 3.895232 TGTGCACTCCTCTTCTATTCC 57.105 47.619 19.41 0.00 0.00 3.01
4961 14656 6.749923 ATTTTGTGCACTCCTCTTCTATTC 57.250 37.500 19.41 0.00 0.00 1.75
5020 14715 8.637281 TTCATTATTGCATTATGAAACTGCTG 57.363 30.769 13.21 0.00 35.86 4.41
5086 14781 4.711055 AGGAAAGAGGGGAAGGAATAGAA 58.289 43.478 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.