Multiple sequence alignment - TraesCS7D01G487500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G487500 chr7D 100.000 4148 0 0 1 4148 597678132 597673985 0.000000e+00 7661.0
1 TraesCS7D01G487500 chrUn 91.651 2743 203 14 900 3622 80037252 80034516 0.000000e+00 3773.0
2 TraesCS7D01G487500 chrUn 91.320 2742 210 15 900 3622 79936994 79939726 0.000000e+00 3720.0
3 TraesCS7D01G487500 chrUn 87.255 1687 185 14 900 2565 79854538 79856215 0.000000e+00 1897.0
4 TraesCS7D01G487500 chr6B 90.618 2718 232 15 942 3654 12886526 12889225 0.000000e+00 3585.0
5 TraesCS7D01G487500 chr6B 90.493 2272 202 11 998 3261 26861803 26864068 0.000000e+00 2987.0
6 TraesCS7D01G487500 chr6B 89.405 2303 207 20 900 3176 13654034 13651743 0.000000e+00 2867.0
7 TraesCS7D01G487500 chr6B 91.176 340 23 5 3813 4148 12889285 12889621 4.890000e-124 455.0
8 TraesCS7D01G487500 chr6B 92.857 42 1 2 3561 3600 12889233 12889274 4.480000e-05 60.2
9 TraesCS7D01G487500 chr6A 90.165 2725 245 16 895 3611 7176063 7173354 0.000000e+00 3526.0
10 TraesCS7D01G487500 chr6A 89.544 2324 228 12 942 3258 7079558 7081873 0.000000e+00 2931.0
11 TraesCS7D01G487500 chr6A 96.037 429 13 3 3724 4148 7120689 7121117 0.000000e+00 695.0
12 TraesCS7D01G487500 chr6A 93.503 431 20 4 3318 3745 7120243 7120668 5.850000e-178 634.0
13 TraesCS7D01G487500 chr6D 90.862 2331 197 7 889 3206 7346087 7343760 0.000000e+00 3110.0
14 TraesCS7D01G487500 chr6D 93.333 75 5 0 13 87 360604682 360604756 1.220000e-20 111.0
15 TraesCS7D01G487500 chr5B 89.931 2324 224 8 942 3261 432982627 432984944 0.000000e+00 2987.0
16 TraesCS7D01G487500 chr1D 96.650 597 18 2 1 596 107157520 107156925 0.000000e+00 990.0
17 TraesCS7D01G487500 chr1D 92.013 313 17 3 590 895 107156801 107156490 2.290000e-117 433.0
18 TraesCS7D01G487500 chr7B 96.981 530 15 1 67 596 611908767 611909295 0.000000e+00 889.0
19 TraesCS7D01G487500 chr7B 92.652 313 15 3 590 895 611909419 611909730 1.060000e-120 444.0
20 TraesCS7D01G487500 chr3B 96.023 528 21 0 67 594 379305439 379304912 0.000000e+00 859.0
21 TraesCS7D01G487500 chr3B 95.472 530 14 6 67 596 709524385 709523866 0.000000e+00 837.0
22 TraesCS7D01G487500 chr3B 91.054 313 18 4 590 895 379304786 379304477 8.300000e-112 414.0
23 TraesCS7D01G487500 chr3B 88.818 313 21 6 590 895 709523743 709523438 5.060000e-99 372.0
24 TraesCS7D01G487500 chr4D 91.781 438 25 4 159 596 433626981 433626555 2.130000e-167 599.0
25 TraesCS7D01G487500 chr4D 90.735 313 20 4 590 895 433626431 433626121 3.860000e-110 409.0
26 TraesCS7D01G487500 chr4D 95.122 164 8 0 1 164 433627447 433627284 4.110000e-65 259.0
27 TraesCS7D01G487500 chr4B 91.429 315 17 2 590 895 620267324 620267637 1.380000e-114 424.0
28 TraesCS7D01G487500 chr4B 95.161 248 12 0 159 406 620266677 620266924 3.890000e-105 392.0
29 TraesCS7D01G487500 chr4B 98.780 164 2 0 1 164 620266210 620266373 4.060000e-75 292.0
30 TraesCS7D01G487500 chr4B 93.651 189 12 0 405 593 620267007 620267195 2.440000e-72 283.0
31 TraesCS7D01G487500 chr7A 92.262 168 11 2 260 426 494786825 494786991 1.930000e-58 237.0
32 TraesCS7D01G487500 chr5A 92.727 165 10 2 263 426 320214406 320214243 1.930000e-58 237.0
33 TraesCS7D01G487500 chr3A 90.751 173 14 2 264 435 600920855 600921026 3.230000e-56 230.0
34 TraesCS7D01G487500 chr2D 90.805 87 5 1 1 87 474645901 474645818 3.390000e-21 113.0
35 TraesCS7D01G487500 chr2D 89.655 87 6 1 1 87 603822432 603822349 1.580000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G487500 chr7D 597673985 597678132 4147 True 7661.000000 7661 100.000000 1 4148 1 chr7D.!!$R1 4147
1 TraesCS7D01G487500 chrUn 80034516 80037252 2736 True 3773.000000 3773 91.651000 900 3622 1 chrUn.!!$R1 2722
2 TraesCS7D01G487500 chrUn 79936994 79939726 2732 False 3720.000000 3720 91.320000 900 3622 1 chrUn.!!$F2 2722
3 TraesCS7D01G487500 chrUn 79854538 79856215 1677 False 1897.000000 1897 87.255000 900 2565 1 chrUn.!!$F1 1665
4 TraesCS7D01G487500 chr6B 26861803 26864068 2265 False 2987.000000 2987 90.493000 998 3261 1 chr6B.!!$F1 2263
5 TraesCS7D01G487500 chr6B 13651743 13654034 2291 True 2867.000000 2867 89.405000 900 3176 1 chr6B.!!$R1 2276
6 TraesCS7D01G487500 chr6B 12886526 12889621 3095 False 1366.733333 3585 91.550333 942 4148 3 chr6B.!!$F2 3206
7 TraesCS7D01G487500 chr6A 7173354 7176063 2709 True 3526.000000 3526 90.165000 895 3611 1 chr6A.!!$R1 2716
8 TraesCS7D01G487500 chr6A 7079558 7081873 2315 False 2931.000000 2931 89.544000 942 3258 1 chr6A.!!$F1 2316
9 TraesCS7D01G487500 chr6A 7120243 7121117 874 False 664.500000 695 94.770000 3318 4148 2 chr6A.!!$F2 830
10 TraesCS7D01G487500 chr6D 7343760 7346087 2327 True 3110.000000 3110 90.862000 889 3206 1 chr6D.!!$R1 2317
11 TraesCS7D01G487500 chr5B 432982627 432984944 2317 False 2987.000000 2987 89.931000 942 3261 1 chr5B.!!$F1 2319
12 TraesCS7D01G487500 chr1D 107156490 107157520 1030 True 711.500000 990 94.331500 1 895 2 chr1D.!!$R1 894
13 TraesCS7D01G487500 chr7B 611908767 611909730 963 False 666.500000 889 94.816500 67 895 2 chr7B.!!$F1 828
14 TraesCS7D01G487500 chr3B 379304477 379305439 962 True 636.500000 859 93.538500 67 895 2 chr3B.!!$R1 828
15 TraesCS7D01G487500 chr3B 709523438 709524385 947 True 604.500000 837 92.145000 67 895 2 chr3B.!!$R2 828
16 TraesCS7D01G487500 chr4D 433626121 433627447 1326 True 422.333333 599 92.546000 1 895 3 chr4D.!!$R1 894
17 TraesCS7D01G487500 chr4B 620266210 620267637 1427 False 347.750000 424 94.755250 1 895 4 chr4B.!!$F1 894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
880 1420 2.585247 GGGACGGCGCTATGTGAC 60.585 66.667 6.9 0.0 0.00 3.67 F
1630 2208 0.320374 TGAGGTGGACAAGGCTTACG 59.680 55.000 0.0 0.0 0.00 3.18 F
1673 2251 1.153046 GGGGAATTTCGCCGGATGA 60.153 57.895 15.8 0.0 39.75 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2541 1.484653 GGTTTTTGGCCCAAACTGACT 59.515 47.619 21.19 0.0 32.79 3.41 R
3123 3705 0.954452 CAGTGCCCTGTTCCAGAAAC 59.046 55.000 0.00 0.0 38.43 2.78 R
3649 4236 1.751351 TGGAGGAACGCAGATCTACAG 59.249 52.381 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 476 8.892723 TCTCAAGCATTTCGATACACAAATAAT 58.107 29.630 0.00 0.00 0.00 1.28
194 506 8.594687 CAAACAACAAATAGTTTTCCACAGAAG 58.405 33.333 0.00 0.00 38.74 2.85
682 1213 5.321102 ACAACAACATATTACCTTGGCTGA 58.679 37.500 0.00 0.00 0.00 4.26
717 1248 2.782222 GGGTCTCGCCGAGCATGTA 61.782 63.158 9.77 0.00 41.89 2.29
751 1282 4.828925 TCAATGATCGCCGCCGCA 62.829 61.111 0.00 0.00 34.03 5.69
880 1420 2.585247 GGGACGGCGCTATGTGAC 60.585 66.667 6.90 0.00 0.00 3.67
1057 1629 1.074405 TGGAGCAGAACATCAAGGCTT 59.926 47.619 0.00 0.00 34.44 4.35
1084 1656 2.350895 CCGGAGACATTGGCACCA 59.649 61.111 6.79 0.00 0.00 4.17
1100 1672 2.738521 CAAGGACGCACTCCACCG 60.739 66.667 0.39 0.00 42.46 4.94
1147 1719 4.271816 CCTCCTCGATCCGTGCCG 62.272 72.222 0.00 0.00 0.00 5.69
1159 1734 0.527817 CCGTGCCGTCAACTATCTCC 60.528 60.000 0.00 0.00 0.00 3.71
1173 1748 4.597004 ACTATCTCCTTACTGTTGTCGGA 58.403 43.478 0.00 0.00 0.00 4.55
1344 1919 6.767902 TCATTAAGATGGGATTTACAGCAGAC 59.232 38.462 0.00 0.00 33.93 3.51
1347 1922 0.739462 TGGGATTTACAGCAGACGCG 60.739 55.000 3.53 3.53 45.49 6.01
1354 1929 1.095600 TACAGCAGACGCGATCTTCT 58.904 50.000 15.93 9.10 45.49 2.85
1375 1950 4.838986 TCTCTTTCAGCCACCTACTAAAGT 59.161 41.667 0.00 0.00 0.00 2.66
1533 2108 2.613133 GGCTCTTGAGCTGATTCACATC 59.387 50.000 20.12 0.00 34.73 3.06
1630 2208 0.320374 TGAGGTGGACAAGGCTTACG 59.680 55.000 0.00 0.00 0.00 3.18
1673 2251 1.153046 GGGGAATTTCGCCGGATGA 60.153 57.895 15.80 0.00 39.75 2.92
1753 2331 3.648067 TGAGGAGGTTCTTCAACAGATGT 59.352 43.478 0.00 0.00 29.07 3.06
1836 2414 3.876309 TTAGGAAGGTGCAAAGAGGTT 57.124 42.857 0.00 0.00 0.00 3.50
1962 2541 9.125026 GAAGCTAGGAAGATTTTTGATTCCATA 57.875 33.333 6.02 0.00 44.11 2.74
1998 2577 6.168389 CCAAAAACCGACTGTTACTACCTAT 58.832 40.000 0.00 0.00 35.67 2.57
2023 2602 4.365723 CATTTTGCTTCATGGGTATGCTC 58.634 43.478 0.00 0.00 34.21 4.26
2140 2719 8.687292 ATCTGCATATGCTAAAGAAGAAATGA 57.313 30.769 27.13 2.04 42.66 2.57
2234 2813 5.857268 AGCGGTAGTAAACTTACTTTCCAA 58.143 37.500 7.41 0.00 40.96 3.53
2308 2887 6.787458 TGAAGGGTTAGCTCCTGATATCATAA 59.213 38.462 5.72 0.00 34.34 1.90
2528 3110 6.707290 AGCCTGATGTGTGTACTTATAACAA 58.293 36.000 0.00 0.00 0.00 2.83
2534 3116 8.984764 TGATGTGTGTACTTATAACAAACTGAC 58.015 33.333 0.00 0.00 36.27 3.51
2578 3160 2.641305 AGATGGATGAAGTGAGCAAGC 58.359 47.619 0.00 0.00 0.00 4.01
2683 3265 7.622713 TGGAAAGATAAATGATGCATTGGTTT 58.377 30.769 0.00 5.46 34.04 3.27
2887 3469 7.463431 AGAAGAAGGTTCTCTACAAGAGTCTA 58.537 38.462 0.00 0.00 42.83 2.59
3102 3684 6.039829 GGAAAGGCCAGGAATATAAAGAGTTG 59.960 42.308 5.01 0.00 36.34 3.16
3108 3690 4.752101 CAGGAATATAAAGAGTTGCTCCCG 59.248 45.833 0.00 0.00 0.00 5.14
3123 3705 2.277084 CTCCCGGAAAAATACCACTCG 58.723 52.381 0.73 0.00 0.00 4.18
3170 3752 5.984695 AACCTTTTCTAGAGATTTTGCCC 57.015 39.130 0.00 0.00 0.00 5.36
3436 4022 0.469705 AGGGAGTTGCACATTTGGCA 60.470 50.000 0.00 0.00 40.00 4.92
3525 4111 4.202111 GCACCTTTTGCCTTACTTTTCTGA 60.202 41.667 0.00 0.00 46.63 3.27
3551 4137 8.056407 TGTACTGATGGTCATATGCTAGATAC 57.944 38.462 0.00 0.00 0.00 2.24
3616 4202 3.641648 CAAGTTGGCAACCATTGTACTG 58.358 45.455 25.81 7.62 31.53 2.74
3629 4216 5.590259 ACCATTGTACTGCATTAACCATCTC 59.410 40.000 0.00 0.00 0.00 2.75
3649 4236 3.343617 TCTTATAGTTGGCAGCAACCAC 58.656 45.455 3.63 0.00 40.19 4.16
3661 4248 1.002366 GCAACCACTGTAGATCTGCG 58.998 55.000 5.18 3.37 0.00 5.18
3681 4268 1.957877 GTTCCTCCAGTCCTAGGATCG 59.042 57.143 16.27 9.08 41.50 3.69
3708 4295 1.515521 CTCACCCCCTCGTGTTTTGC 61.516 60.000 0.00 0.00 35.18 3.68
3709 4296 1.528309 CACCCCCTCGTGTTTTGCT 60.528 57.895 0.00 0.00 0.00 3.91
3710 4297 1.106944 CACCCCCTCGTGTTTTGCTT 61.107 55.000 0.00 0.00 0.00 3.91
3711 4298 0.822121 ACCCCCTCGTGTTTTGCTTC 60.822 55.000 0.00 0.00 0.00 3.86
3712 4299 0.821711 CCCCCTCGTGTTTTGCTTCA 60.822 55.000 0.00 0.00 0.00 3.02
3749 4378 2.565834 TGTACACCTCAAGCCTCCTAAC 59.434 50.000 0.00 0.00 0.00 2.34
3808 4470 2.303890 TCATCAGGACTGTCTTGTGCAT 59.696 45.455 17.89 3.71 0.00 3.96
3901 4563 3.752665 CATGATGCCCTCAGCTAGAATT 58.247 45.455 0.00 0.00 44.23 2.17
4005 4667 6.426937 TGTTAGGTGCTATTGACTGAGTTTTC 59.573 38.462 0.00 0.00 0.00 2.29
4008 4670 4.927425 GGTGCTATTGACTGAGTTTTCGTA 59.073 41.667 0.00 0.00 0.00 3.43
4015 4677 4.473199 TGACTGAGTTTTCGTATCGACAG 58.527 43.478 0.00 0.00 34.89 3.51
4032 4694 3.653344 GACAGCACACATTGACTGAGTA 58.347 45.455 0.00 0.00 34.94 2.59
4109 4773 8.085296 TGAATTTGAAATTTATAGTGGCACGTT 58.915 29.630 12.71 6.29 0.00 3.99
4110 4774 9.562583 GAATTTGAAATTTATAGTGGCACGTTA 57.437 29.630 12.71 5.24 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 7.450074 TGTGTCCAGTCTATATTTGTCAGTTT 58.550 34.615 0.00 0.00 0.00 2.66
194 506 3.070159 TGCCTGCAAGTATGACCTCTATC 59.930 47.826 0.00 0.00 0.00 2.08
344 657 8.039603 ACGTAGCAAAATGAATGAATCTACAA 57.960 30.769 0.00 0.00 0.00 2.41
625 1156 4.242475 TGCTAAAGTATCGTGTGTCTTGG 58.758 43.478 0.00 0.00 0.00 3.61
682 1213 2.561885 CGTGCTTCTCTCCGTCGT 59.438 61.111 0.00 0.00 0.00 4.34
717 1248 0.920763 TGATGGGCATCCTCAAGGGT 60.921 55.000 0.00 0.00 37.02 4.34
751 1282 4.265056 GTGCGGAGTTGGTGGGGT 62.265 66.667 0.00 0.00 0.00 4.95
891 1431 1.200092 AAGCAGAGCAAGGAGGAGCT 61.200 55.000 0.00 0.00 45.25 4.09
892 1432 0.322366 AAAGCAGAGCAAGGAGGAGC 60.322 55.000 0.00 0.00 0.00 4.70
893 1433 1.678425 GGAAAGCAGAGCAAGGAGGAG 60.678 57.143 0.00 0.00 0.00 3.69
894 1434 0.326264 GGAAAGCAGAGCAAGGAGGA 59.674 55.000 0.00 0.00 0.00 3.71
895 1435 0.327591 AGGAAAGCAGAGCAAGGAGG 59.672 55.000 0.00 0.00 0.00 4.30
896 1436 2.083002 GAAGGAAAGCAGAGCAAGGAG 58.917 52.381 0.00 0.00 0.00 3.69
897 1437 1.271597 GGAAGGAAAGCAGAGCAAGGA 60.272 52.381 0.00 0.00 0.00 3.36
898 1438 1.172175 GGAAGGAAAGCAGAGCAAGG 58.828 55.000 0.00 0.00 0.00 3.61
1023 1595 1.078918 CTCCAAGATGCGTCTGCCA 60.079 57.895 9.75 0.00 41.78 4.92
1057 1629 3.376078 GTCTCCGGCGTGGTACCA 61.376 66.667 11.60 11.60 39.52 3.25
1100 1672 1.200020 CCTGGAGCAATTCGTCAAACC 59.800 52.381 0.00 0.00 0.00 3.27
1147 1719 5.800941 CGACAACAGTAAGGAGATAGTTGAC 59.199 44.000 9.73 3.35 38.80 3.18
1159 1734 2.410785 TCACGTCCGACAACAGTAAG 57.589 50.000 0.00 0.00 0.00 2.34
1344 1919 0.926846 GGCTGAAAGAGAAGATCGCG 59.073 55.000 0.00 0.00 34.07 5.87
1347 1922 3.625649 AGGTGGCTGAAAGAGAAGATC 57.374 47.619 0.00 0.00 34.07 2.75
1354 1929 4.020485 GGACTTTAGTAGGTGGCTGAAAGA 60.020 45.833 0.00 0.00 34.07 2.52
1375 1950 3.031013 TCTTCTTCTCCGCACATATGGA 58.969 45.455 7.80 0.00 0.00 3.41
1426 2001 3.009723 TGCAGTTAAGCTCAGGCATTAC 58.990 45.455 0.00 0.00 41.70 1.89
1533 2108 2.372264 CAACCTCCATCCTCAACCATG 58.628 52.381 0.00 0.00 0.00 3.66
1630 2208 4.199310 TGTAGCATTTCACAGAATAGGCC 58.801 43.478 0.00 0.00 0.00 5.19
1638 2216 2.237143 TCCCCTCTGTAGCATTTCACAG 59.763 50.000 0.00 0.00 42.88 3.66
1673 2251 8.366401 CAGAGATGATTGAGTTATAGGTCACAT 58.634 37.037 0.00 0.00 0.00 3.21
1753 2331 5.698741 TCTGGCAGAATTCCTCTATCAAA 57.301 39.130 16.28 0.00 31.12 2.69
1822 2400 1.611673 CCGATCAACCTCTTTGCACCT 60.612 52.381 0.00 0.00 34.88 4.00
1836 2414 5.945784 AGACATTTCCTTGAAAATCCGATCA 59.054 36.000 0.00 0.00 35.11 2.92
1962 2541 1.484653 GGTTTTTGGCCCAAACTGACT 59.515 47.619 21.19 0.00 32.79 3.41
1998 2577 4.202141 GCATACCCATGAAGCAAAATGCTA 60.202 41.667 5.13 0.00 42.71 3.49
2023 2602 5.503683 GCATCTCATGAAAAGATCGTTCCAG 60.504 44.000 0.00 4.21 31.05 3.86
2181 2760 2.419990 CGCTACATCAGGGTTCAATCCA 60.420 50.000 0.00 0.00 32.61 3.41
2234 2813 2.511659 CATCATCCATTCGGCCAATCT 58.488 47.619 2.24 0.00 0.00 2.40
2528 3110 4.102524 TGAACAAGTATCCACCTGTCAGTT 59.897 41.667 0.00 0.00 27.62 3.16
2534 3116 4.335416 ACCAATGAACAAGTATCCACCTG 58.665 43.478 0.00 0.00 0.00 4.00
2578 3160 7.467811 GCCAATTGAGACCATATTGTCAAGTAG 60.468 40.741 7.12 0.00 37.73 2.57
2750 3332 2.591923 TCCTGCCACATTTAAGCAACA 58.408 42.857 0.00 0.00 35.79 3.33
3102 3684 2.014857 GAGTGGTATTTTTCCGGGAGC 58.985 52.381 0.00 0.00 0.00 4.70
3108 3690 4.758165 TCCAGAAACGAGTGGTATTTTTCC 59.242 41.667 0.00 0.00 35.14 3.13
3123 3705 0.954452 CAGTGCCCTGTTCCAGAAAC 59.046 55.000 0.00 0.00 38.43 2.78
3332 3918 9.075678 AGTCAGAAAGTTTACTACTAGCTTGTA 57.924 33.333 7.79 7.79 35.54 2.41
3525 4111 7.730672 ATCTAGCATATGACCATCAGTACAT 57.269 36.000 6.97 0.00 0.00 2.29
3551 4137 4.213564 ACTCAAGTTATGAAGGGCTGAG 57.786 45.455 0.00 0.00 37.67 3.35
3649 4236 1.751351 TGGAGGAACGCAGATCTACAG 59.249 52.381 0.00 0.00 0.00 2.74
3661 4248 1.957877 CGATCCTAGGACTGGAGGAAC 59.042 57.143 15.42 0.00 44.98 3.62
3703 4290 1.452145 GGGCAGACCGTGAAGCAAAA 61.452 55.000 0.00 0.00 36.48 2.44
3708 4295 0.608640 AAGTAGGGCAGACCGTGAAG 59.391 55.000 0.00 0.00 46.96 3.02
3709 4296 1.053424 AAAGTAGGGCAGACCGTGAA 58.947 50.000 0.00 0.00 46.96 3.18
3710 4297 0.320374 CAAAGTAGGGCAGACCGTGA 59.680 55.000 0.00 0.00 46.96 4.35
3711 4298 0.034896 ACAAAGTAGGGCAGACCGTG 59.965 55.000 0.00 0.00 46.96 4.94
3712 4299 1.274447 GTACAAAGTAGGGCAGACCGT 59.726 52.381 0.00 0.00 46.96 4.83
3779 4408 4.865905 AGACAGTCCTGATGATCAGTACT 58.134 43.478 20.06 17.07 43.24 2.73
3793 4425 1.160137 GGTCATGCACAAGACAGTCC 58.840 55.000 15.15 0.00 36.50 3.85
3808 4470 2.546778 GACAACTTCAACGAGTGGTCA 58.453 47.619 7.50 0.00 45.78 4.02
4005 4667 2.028045 GTCAATGTGTGCTGTCGATACG 59.972 50.000 0.00 0.00 0.00 3.06
4008 4670 2.071540 CAGTCAATGTGTGCTGTCGAT 58.928 47.619 0.00 0.00 30.96 3.59
4015 4677 8.853345 CAATAAAAATACTCAGTCAATGTGTGC 58.147 33.333 0.00 0.00 36.35 4.57
4032 4694 7.790782 ACCATGTGGGACTAACAATAAAAAT 57.209 32.000 3.77 0.00 41.15 1.82
4110 4774 9.322769 ACGATATACAGGGTAAAGAAGGATAAT 57.677 33.333 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.