Multiple sequence alignment - TraesCS7D01G487300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G487300 chr7D 100.000 3318 0 0 1 3318 597618781 597622098 0.000000e+00 6128.0
1 TraesCS7D01G487300 chr7D 96.051 1646 64 1 876 2520 597546573 597544928 0.000000e+00 2678.0
2 TraesCS7D01G487300 chr7D 91.853 1792 120 10 751 2520 597570519 597568732 0.000000e+00 2477.0
3 TraesCS7D01G487300 chr7D 91.520 684 39 8 2649 3318 597546569 597547247 0.000000e+00 924.0
4 TraesCS7D01G487300 chr7D 82.414 1052 157 14 1318 2361 597574872 597573841 0.000000e+00 893.0
5 TraesCS7D01G487300 chr7D 78.779 1310 214 40 1026 2324 597654327 597653071 0.000000e+00 821.0
6 TraesCS7D01G487300 chr7D 94.595 37 2 0 2534 2570 597544945 597544909 1.290000e-04 58.4
7 TraesCS7D01G487300 chr7B 91.302 2104 146 18 790 2875 676535176 676533092 0.000000e+00 2837.0
8 TraesCS7D01G487300 chr7B 92.237 1842 116 14 1154 2975 676862212 676860378 0.000000e+00 2584.0
9 TraesCS7D01G487300 chr7B 92.297 1376 97 4 1124 2494 676993419 676994790 0.000000e+00 1945.0
10 TraesCS7D01G487300 chr7B 82.964 1579 235 22 762 2324 676211292 676209732 0.000000e+00 1395.0
11 TraesCS7D01G487300 chr7B 91.246 594 40 7 1 593 676535899 676535317 0.000000e+00 798.0
12 TraesCS7D01G487300 chr7B 84.034 833 117 12 762 1585 676217245 676216420 0.000000e+00 787.0
13 TraesCS7D01G487300 chr7B 93.034 445 21 6 2882 3318 676863125 676862683 2.790000e-180 641.0
14 TraesCS7D01G487300 chr7B 88.946 389 36 5 2919 3302 676533081 676532695 1.080000e-129 473.0
15 TraesCS7D01G487300 chr7B 87.240 384 26 4 751 1128 676988104 676988470 1.840000e-112 416.0
16 TraesCS7D01G487300 chr7B 84.925 398 35 14 2404 2786 676863527 676863140 2.420000e-101 379.0
17 TraesCS7D01G487300 chr7B 91.057 246 17 3 3076 3318 676860153 676859910 8.880000e-86 327.0
18 TraesCS7D01G487300 chr7B 93.684 95 6 0 660 754 676862380 676862286 3.450000e-30 143.0
19 TraesCS7D01G487300 chr7B 93.103 58 4 0 683 740 676535233 676535176 5.900000e-13 86.1
20 TraesCS7D01G487300 chr7B 89.394 66 6 1 2586 2650 524040287 524040352 7.630000e-12 82.4
21 TraesCS7D01G487300 chr7B 91.111 45 2 2 2534 2576 676533463 676533419 3.570000e-05 60.2
22 TraesCS7D01G487300 chr7B 100.000 32 0 0 881 912 676862277 676862246 3.570000e-05 60.2
23 TraesCS7D01G487300 chr7A 94.360 1649 82 6 876 2520 690517135 690518776 0.000000e+00 2519.0
24 TraesCS7D01G487300 chr7A 90.919 936 69 4 1599 2520 690439282 690440215 0.000000e+00 1243.0
25 TraesCS7D01G487300 chr7A 80.444 1667 249 41 761 2376 690425101 690426741 0.000000e+00 1201.0
26 TraesCS7D01G487300 chr7A 92.185 691 45 5 859 1541 690438588 690439277 0.000000e+00 968.0
27 TraesCS7D01G487300 chr7A 78.439 1294 221 37 1040 2324 690399846 690401090 0.000000e+00 791.0
28 TraesCS7D01G487300 chr7A 86.706 677 55 15 2652 3318 690517136 690516485 0.000000e+00 719.0
29 TraesCS7D01G487300 chr7A 92.638 163 9 2 751 911 690438431 690438592 7.160000e-57 231.0
30 TraesCS7D01G487300 chr7A 84.729 203 23 5 3095 3290 567433882 567433681 2.610000e-46 196.0
31 TraesCS7D01G487300 chr2D 89.508 772 60 13 1 755 72711646 72712413 0.000000e+00 957.0
32 TraesCS7D01G487300 chr2D 86.822 774 51 20 1 755 603652558 603653299 0.000000e+00 817.0
33 TraesCS7D01G487300 chr2D 87.500 120 13 2 361 480 603652798 603652915 1.610000e-28 137.0
34 TraesCS7D01G487300 chr2D 83.465 127 12 6 361 480 72711884 72712008 3.500000e-20 110.0
35 TraesCS7D01G487300 chr2B 89.261 717 60 7 2586 3287 754024904 754024190 0.000000e+00 881.0
36 TraesCS7D01G487300 chr2B 82.857 70 10 2 2587 2654 514686665 514686596 9.940000e-06 62.1
37 TraesCS7D01G487300 chr2A 85.104 772 64 25 1 755 735792723 735793460 0.000000e+00 741.0
38 TraesCS7D01G487300 chr4A 85.410 658 70 12 2588 3236 693524313 693523673 0.000000e+00 660.0
39 TraesCS7D01G487300 chr3D 78.638 323 43 9 2586 2882 602792714 602792392 1.210000e-44 191.0
40 TraesCS7D01G487300 chr4D 87.692 65 7 1 2585 2648 234724548 234724484 1.280000e-09 75.0
41 TraesCS7D01G487300 chr4B 85.714 70 9 1 2582 2650 429024968 429025037 4.590000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G487300 chr7D 597618781 597622098 3317 False 6128.000000 6128 100.0000 1 3318 1 chr7D.!!$F2 3317
1 TraesCS7D01G487300 chr7D 597568732 597574872 6140 True 1685.000000 2477 87.1335 751 2520 2 chr7D.!!$R3 1769
2 TraesCS7D01G487300 chr7D 597544909 597546573 1664 True 1368.200000 2678 95.3230 876 2570 2 chr7D.!!$R2 1694
3 TraesCS7D01G487300 chr7D 597546569 597547247 678 False 924.000000 924 91.5200 2649 3318 1 chr7D.!!$F1 669
4 TraesCS7D01G487300 chr7D 597653071 597654327 1256 True 821.000000 821 78.7790 1026 2324 1 chr7D.!!$R1 1298
5 TraesCS7D01G487300 chr7B 676993419 676994790 1371 False 1945.000000 1945 92.2970 1124 2494 1 chr7B.!!$F3 1370
6 TraesCS7D01G487300 chr7B 676209732 676211292 1560 True 1395.000000 1395 82.9640 762 2324 1 chr7B.!!$R1 1562
7 TraesCS7D01G487300 chr7B 676532695 676535899 3204 True 850.860000 2837 91.1416 1 3302 5 chr7B.!!$R3 3301
8 TraesCS7D01G487300 chr7B 676216420 676217245 825 True 787.000000 787 84.0340 762 1585 1 chr7B.!!$R2 823
9 TraesCS7D01G487300 chr7B 676859910 676863527 3617 True 689.033333 2584 92.4895 660 3318 6 chr7B.!!$R4 2658
10 TraesCS7D01G487300 chr7A 690517135 690518776 1641 False 2519.000000 2519 94.3600 876 2520 1 chr7A.!!$F3 1644
11 TraesCS7D01G487300 chr7A 690425101 690426741 1640 False 1201.000000 1201 80.4440 761 2376 1 chr7A.!!$F2 1615
12 TraesCS7D01G487300 chr7A 690438431 690440215 1784 False 814.000000 1243 91.9140 751 2520 3 chr7A.!!$F4 1769
13 TraesCS7D01G487300 chr7A 690399846 690401090 1244 False 791.000000 791 78.4390 1040 2324 1 chr7A.!!$F1 1284
14 TraesCS7D01G487300 chr7A 690516485 690517136 651 True 719.000000 719 86.7060 2652 3318 1 chr7A.!!$R2 666
15 TraesCS7D01G487300 chr2D 72711646 72712413 767 False 533.500000 957 86.4865 1 755 2 chr2D.!!$F1 754
16 TraesCS7D01G487300 chr2D 603652558 603653299 741 False 477.000000 817 87.1610 1 755 2 chr2D.!!$F2 754
17 TraesCS7D01G487300 chr2B 754024190 754024904 714 True 881.000000 881 89.2610 2586 3287 1 chr2B.!!$R2 701
18 TraesCS7D01G487300 chr2A 735792723 735793460 737 False 741.000000 741 85.1040 1 755 1 chr2A.!!$F1 754
19 TraesCS7D01G487300 chr4A 693523673 693524313 640 True 660.000000 660 85.4100 2588 3236 1 chr4A.!!$R1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 496 0.038526 AAGAGTGCTTCCGTGGTACG 60.039 55.0 0.0 0.0 42.11 3.67 F
759 4362 0.381089 AATCCTACGGCTTCGACGAG 59.619 55.0 0.0 0.0 35.20 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 6008 0.541764 GGATTTGGTCCCAGTTGGCA 60.542 55.000 0.0 0.0 41.50 4.92 R
2567 6378 1.476833 CCCACTATATGCTTTGGCCGT 60.477 52.381 0.0 0.0 37.74 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.093972 CAGCCATTGTAATGTCGGCA 58.906 50.000 0.00 0.00 34.60 5.69
249 256 7.742151 TGAATGTATTCATCGAACAGAAAGTG 58.258 34.615 3.28 0.00 41.51 3.16
251 258 8.099364 AATGTATTCATCGAACAGAAAGTGTT 57.901 30.769 0.00 0.00 41.84 3.32
383 398 5.941058 TGAATAGAAAGTTTTCGGCCATGTA 59.059 36.000 2.24 0.00 41.92 2.29
401 445 5.925969 CCATGTAAACAGTTTTGTTCCCATC 59.074 40.000 3.25 0.00 46.54 3.51
452 496 0.038526 AAGAGTGCTTCCGTGGTACG 60.039 55.000 0.00 0.00 42.11 3.67
465 509 3.433957 CCGTGGTACGAAAATCATGTTGA 59.566 43.478 2.52 0.00 46.05 3.18
551 597 2.024176 AGGGAATTGACGACATTCCG 57.976 50.000 16.28 0.00 43.51 4.30
652 758 2.295909 GCAAATTGTGGCTGTGAGGTTA 59.704 45.455 0.00 0.00 0.00 2.85
653 759 3.857010 GCAAATTGTGGCTGTGAGGTTAC 60.857 47.826 0.00 0.00 0.00 2.50
654 760 1.808411 ATTGTGGCTGTGAGGTTACG 58.192 50.000 0.00 0.00 0.00 3.18
655 761 0.753867 TTGTGGCTGTGAGGTTACGA 59.246 50.000 0.00 0.00 0.00 3.43
656 762 0.973632 TGTGGCTGTGAGGTTACGAT 59.026 50.000 0.00 0.00 0.00 3.73
657 763 1.346395 TGTGGCTGTGAGGTTACGATT 59.654 47.619 0.00 0.00 0.00 3.34
659 765 1.338674 TGGCTGTGAGGTTACGATTGG 60.339 52.381 0.00 0.00 0.00 3.16
660 766 1.369625 GCTGTGAGGTTACGATTGGG 58.630 55.000 0.00 0.00 0.00 4.12
661 767 1.066430 GCTGTGAGGTTACGATTGGGA 60.066 52.381 0.00 0.00 0.00 4.37
662 768 2.614481 GCTGTGAGGTTACGATTGGGAA 60.614 50.000 0.00 0.00 0.00 3.97
663 769 3.262420 CTGTGAGGTTACGATTGGGAAG 58.738 50.000 0.00 0.00 0.00 3.46
681 1170 3.244249 GGAAGCAGCTAGATTTACGGGAT 60.244 47.826 0.00 0.00 0.00 3.85
759 4362 0.381089 AATCCTACGGCTTCGACGAG 59.619 55.000 0.00 0.00 35.20 4.18
786 4389 7.201705 GCACCAAAGATATAACTGTAGGGAAAC 60.202 40.741 0.00 0.00 0.00 2.78
861 4467 5.663795 AGTCATCTTAATATGCGCACTTG 57.336 39.130 14.90 1.69 0.00 3.16
1008 4680 3.704061 GCTAGATAGCTAAGATGGGGAGG 59.296 52.174 0.00 0.00 45.62 4.30
1050 4722 1.081892 CCCTTGCAGTCATCTTCGTG 58.918 55.000 0.00 0.00 0.00 4.35
1065 4737 2.946762 GTGTTTGCCGTCCTGCTC 59.053 61.111 0.00 0.00 0.00 4.26
1068 4740 2.032528 TTTGCCGTCCTGCTCCTG 59.967 61.111 0.00 0.00 0.00 3.86
1092 4764 1.379443 TGATCTAGGGTCGTGCGGT 60.379 57.895 0.00 0.00 0.00 5.68
1164 4836 3.808036 GCGTACATCACCCGCAAT 58.192 55.556 0.00 0.00 46.26 3.56
1165 4837 1.351707 GCGTACATCACCCGCAATG 59.648 57.895 0.00 0.00 46.26 2.82
1223 4898 2.375345 CCTACTTCCACCGCCCCAT 61.375 63.158 0.00 0.00 0.00 4.00
1303 5013 2.421775 TGCATGTGTGTTCGAACAGTTT 59.578 40.909 30.38 13.30 40.05 2.66
1597 5366 5.144359 GCAAAAACATACGTTACAGTCAGG 58.856 41.667 0.00 0.00 33.99 3.86
2009 5805 3.181491 GCACAACCAGCTACTGAAACAAA 60.181 43.478 0.00 0.00 32.44 2.83
2212 6008 1.632965 GCCCCGACCCATCTAGGTTT 61.633 60.000 0.00 0.00 41.42 3.27
2450 6258 7.974482 ATTAGAGGTTGTTACTTTGTACCAC 57.026 36.000 0.00 0.00 0.00 4.16
2459 6267 5.701750 TGTTACTTTGTACCACATGCGTATT 59.298 36.000 0.00 0.00 0.00 1.89
2479 6287 2.665165 TGAAAAGTGCAACAGTGGGAT 58.335 42.857 0.00 0.00 41.43 3.85
2523 6331 8.525290 ACTTGCATTATTGGCTAGTCTTTATT 57.475 30.769 0.00 0.00 42.22 1.40
2524 6332 8.971073 ACTTGCATTATTGGCTAGTCTTTATTT 58.029 29.630 0.00 0.00 42.22 1.40
2525 6333 9.807649 CTTGCATTATTGGCTAGTCTTTATTTT 57.192 29.630 0.00 0.00 31.00 1.82
2544 6352 4.782019 TTTTTGACGAGCATTATTGGCT 57.218 36.364 0.00 0.00 46.07 4.75
2545 6353 5.888691 TTTTTGACGAGCATTATTGGCTA 57.111 34.783 0.00 0.00 42.78 3.93
2546 6354 5.484173 TTTTGACGAGCATTATTGGCTAG 57.516 39.130 0.00 0.00 42.78 3.42
2550 6358 4.408182 ACGAGCATTATTGGCTAGTCTT 57.592 40.909 0.00 0.00 42.38 3.01
2567 6378 9.162764 GGCTAGTCTTGTTTTAGATATTGTCAA 57.837 33.333 0.00 0.00 0.00 3.18
2570 6381 8.029642 AGTCTTGTTTTAGATATTGTCAACGG 57.970 34.615 0.00 0.00 0.00 4.44
2571 6382 6.741358 GTCTTGTTTTAGATATTGTCAACGGC 59.259 38.462 0.00 0.00 0.00 5.68
2572 6383 5.554822 TGTTTTAGATATTGTCAACGGCC 57.445 39.130 0.00 0.00 0.00 6.13
2573 6384 5.004448 TGTTTTAGATATTGTCAACGGCCA 58.996 37.500 2.24 0.00 0.00 5.36
2574 6385 5.473846 TGTTTTAGATATTGTCAACGGCCAA 59.526 36.000 2.24 0.00 0.00 4.52
2747 6602 8.979574 GCTGATTACGTGCTAATAATTACTTCT 58.020 33.333 0.00 0.00 0.00 2.85
2800 6656 9.696917 CTCCATATATTTAGGCAACAAATTTCC 57.303 33.333 0.00 0.00 41.41 3.13
2863 6719 3.469629 CGCGATATAATTTGCGGACTTG 58.530 45.455 0.00 0.00 46.31 3.16
2864 6720 3.183574 CGCGATATAATTTGCGGACTTGA 59.816 43.478 0.00 0.00 46.31 3.02
2954 6815 8.638685 TTCCATCTTACACGTAGTAATTTAGC 57.361 34.615 9.85 0.00 41.61 3.09
3169 7221 0.461339 CGCTGCGTGTAATTAGGGGT 60.461 55.000 14.93 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.941788 AGACACTATTTTCACTTTCACCCT 58.058 37.500 0.00 0.00 0.00 4.34
150 154 1.859302 AAGCAGGTGTGGAAACCAAA 58.141 45.000 0.00 0.00 43.20 3.28
249 256 2.514205 AACTGTTTGCATGGCAGAAC 57.486 45.000 16.25 4.98 40.61 3.01
251 258 1.755959 ACAAACTGTTTGCATGGCAGA 59.244 42.857 28.02 0.00 44.39 4.26
357 372 5.975693 TGGCCGAAAACTTTCTATTCATT 57.024 34.783 0.00 0.00 35.07 2.57
363 378 5.531659 TGTTTACATGGCCGAAAACTTTCTA 59.468 36.000 17.53 1.46 35.07 2.10
401 445 6.320171 CAAGGAAGCATCATTTTCTAGTGTG 58.680 40.000 0.00 0.00 0.00 3.82
452 496 9.897744 TTCTTCACTTATGTCAACATGATTTTC 57.102 29.630 0.00 0.00 37.15 2.29
551 597 5.582269 GCTTCAAATCCTAAAATTGCTTCCC 59.418 40.000 0.00 0.00 0.00 3.97
652 758 1.195115 TCTAGCTGCTTCCCAATCGT 58.805 50.000 7.79 0.00 0.00 3.73
653 759 2.540265 ATCTAGCTGCTTCCCAATCG 57.460 50.000 7.79 0.00 0.00 3.34
654 760 4.212214 CGTAAATCTAGCTGCTTCCCAATC 59.788 45.833 7.79 0.00 0.00 2.67
655 761 4.130118 CGTAAATCTAGCTGCTTCCCAAT 58.870 43.478 7.79 0.00 0.00 3.16
656 762 3.531538 CGTAAATCTAGCTGCTTCCCAA 58.468 45.455 7.79 0.00 0.00 4.12
657 763 2.158957 CCGTAAATCTAGCTGCTTCCCA 60.159 50.000 7.79 0.00 0.00 4.37
659 765 2.102588 TCCCGTAAATCTAGCTGCTTCC 59.897 50.000 7.79 0.00 0.00 3.46
660 766 3.454371 TCCCGTAAATCTAGCTGCTTC 57.546 47.619 7.79 0.00 0.00 3.86
661 767 3.388024 TGATCCCGTAAATCTAGCTGCTT 59.612 43.478 7.79 0.00 0.00 3.91
662 768 2.965831 TGATCCCGTAAATCTAGCTGCT 59.034 45.455 7.57 7.57 0.00 4.24
663 769 3.386768 TGATCCCGTAAATCTAGCTGC 57.613 47.619 0.00 0.00 0.00 5.25
759 4362 5.063880 CCCTACAGTTATATCTTTGGTGCC 58.936 45.833 0.00 0.00 0.00 5.01
786 4389 6.538742 CAGTGTATCTTACTACCCCACAATTG 59.461 42.308 3.24 3.24 0.00 2.32
848 4454 1.714899 GCGGTCCAAGTGCGCATATT 61.715 55.000 15.91 9.47 0.00 1.28
855 4461 1.423845 CGTTATGCGGTCCAAGTGC 59.576 57.895 0.00 0.00 36.85 4.40
1050 4722 2.032681 AGGAGCAGGACGGCAAAC 59.967 61.111 0.00 0.00 35.83 2.93
1065 4737 1.067821 GACCCTAGATCAGCGTTCAGG 59.932 57.143 0.00 0.00 0.00 3.86
1068 4740 0.739561 ACGACCCTAGATCAGCGTTC 59.260 55.000 0.00 0.00 0.00 3.95
1303 5013 4.495911 TTTAGCATGCACACGAAATTCA 57.504 36.364 21.98 0.00 0.00 2.57
2009 5805 2.277969 CGACTTGAGCATGCTGATCTT 58.722 47.619 28.27 3.33 33.24 2.40
2212 6008 0.541764 GGATTTGGTCCCAGTTGGCA 60.542 55.000 0.00 0.00 41.50 4.92
2239 6035 3.183172 CGATGACATTGTATGCCTTCTCG 59.817 47.826 0.00 0.00 0.00 4.04
2324 6126 7.587037 TCAAATCTGAAAATGAAGGAACTGT 57.413 32.000 0.00 0.00 40.86 3.55
2361 6165 5.450818 ACAAAGGGAGTATTCATTAGCCA 57.549 39.130 0.00 0.00 0.00 4.75
2450 6258 3.980134 TGTTGCACTTTTCAATACGCATG 59.020 39.130 0.00 0.00 0.00 4.06
2459 6267 2.136298 TCCCACTGTTGCACTTTTCA 57.864 45.000 0.00 0.00 0.00 2.69
2523 6331 4.782019 AGCCAATAATGCTCGTCAAAAA 57.218 36.364 0.00 0.00 32.41 1.94
2524 6332 4.941263 ACTAGCCAATAATGCTCGTCAAAA 59.059 37.500 0.00 0.00 40.23 2.44
2525 6333 4.513442 ACTAGCCAATAATGCTCGTCAAA 58.487 39.130 0.00 0.00 40.23 2.69
2526 6334 4.119862 GACTAGCCAATAATGCTCGTCAA 58.880 43.478 10.80 0.00 45.64 3.18
2527 6335 3.717707 GACTAGCCAATAATGCTCGTCA 58.282 45.455 10.80 0.00 45.64 4.35
2528 6336 3.983741 AGACTAGCCAATAATGCTCGTC 58.016 45.455 8.38 8.38 46.29 4.20
2529 6337 4.122776 CAAGACTAGCCAATAATGCTCGT 58.877 43.478 0.00 0.00 40.23 4.18
2530 6338 4.122776 ACAAGACTAGCCAATAATGCTCG 58.877 43.478 0.00 0.00 40.23 5.03
2531 6339 6.442513 AAACAAGACTAGCCAATAATGCTC 57.557 37.500 0.00 0.00 40.23 4.26
2532 6340 6.840780 AAAACAAGACTAGCCAATAATGCT 57.159 33.333 0.00 0.00 42.81 3.79
2533 6341 7.985476 TCTAAAACAAGACTAGCCAATAATGC 58.015 34.615 0.00 0.00 0.00 3.56
2538 6346 9.686683 ACAATATCTAAAACAAGACTAGCCAAT 57.313 29.630 0.00 0.00 0.00 3.16
2539 6347 9.162764 GACAATATCTAAAACAAGACTAGCCAA 57.837 33.333 0.00 0.00 0.00 4.52
2540 6348 8.318412 TGACAATATCTAAAACAAGACTAGCCA 58.682 33.333 0.00 0.00 0.00 4.75
2541 6349 8.718102 TGACAATATCTAAAACAAGACTAGCC 57.282 34.615 0.00 0.00 0.00 3.93
2542 6350 9.974750 GTTGACAATATCTAAAACAAGACTAGC 57.025 33.333 0.00 0.00 0.00 3.42
2544 6352 9.146984 CCGTTGACAATATCTAAAACAAGACTA 57.853 33.333 0.00 0.00 0.00 2.59
2545 6353 7.360946 GCCGTTGACAATATCTAAAACAAGACT 60.361 37.037 0.00 0.00 0.00 3.24
2546 6354 6.741358 GCCGTTGACAATATCTAAAACAAGAC 59.259 38.462 0.00 0.00 0.00 3.01
2547 6355 6.128117 GGCCGTTGACAATATCTAAAACAAGA 60.128 38.462 0.00 0.00 0.00 3.02
2548 6356 6.027749 GGCCGTTGACAATATCTAAAACAAG 58.972 40.000 0.00 0.00 0.00 3.16
2549 6357 5.473846 TGGCCGTTGACAATATCTAAAACAA 59.526 36.000 0.00 0.00 0.00 2.83
2550 6358 5.004448 TGGCCGTTGACAATATCTAAAACA 58.996 37.500 0.00 0.00 0.00 2.83
2562 6373 1.832883 ATATGCTTTGGCCGTTGACA 58.167 45.000 0.00 0.00 37.74 3.58
2567 6378 1.476833 CCCACTATATGCTTTGGCCGT 60.477 52.381 0.00 0.00 37.74 5.68
2570 6381 2.623416 GGTTCCCACTATATGCTTTGGC 59.377 50.000 0.00 0.00 39.26 4.52
2571 6382 2.878406 CGGTTCCCACTATATGCTTTGG 59.122 50.000 0.00 0.00 0.00 3.28
2572 6383 2.290641 GCGGTTCCCACTATATGCTTTG 59.709 50.000 0.00 0.00 0.00 2.77
2573 6384 2.172717 AGCGGTTCCCACTATATGCTTT 59.827 45.455 0.00 0.00 0.00 3.51
2574 6385 1.768870 AGCGGTTCCCACTATATGCTT 59.231 47.619 0.00 0.00 0.00 3.91
2614 6459 4.770010 GCTACTGGTCTGATAGGAAGCTAT 59.230 45.833 0.00 0.00 0.00 2.97
2800 6656 4.033817 CAGTTACTACTCTCCTTACCGTCG 59.966 50.000 0.00 0.00 30.26 5.12
3089 7138 6.014012 CAGGGATTGTTTCCTAAAAAGGGTA 58.986 40.000 0.00 0.00 44.75 3.69
3213 7266 7.832187 AGCAAATTCAAATTGGATTGGATTCAT 59.168 29.630 5.57 0.00 37.49 2.57
3269 7326 3.401033 TCTTGGAAGCAATCTCGTTGA 57.599 42.857 0.00 0.00 40.37 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.