Multiple sequence alignment - TraesCS7D01G487000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G487000 chr7D 100.000 3578 0 0 1 3578 597547538 597543961 0.000000e+00 6608.0
1 TraesCS7D01G487000 chr7D 96.051 1646 64 1 966 2611 597619656 597621300 0.000000e+00 2678.0
2 TraesCS7D01G487000 chr7D 91.454 1685 120 8 966 2630 597570393 597568713 0.000000e+00 2292.0
3 TraesCS7D01G487000 chr7D 91.097 775 43 10 201 970 597622182 597621429 0.000000e+00 1026.0
4 TraesCS7D01G487000 chr7D 93.322 599 22 5 2993 3578 514100444 514099851 0.000000e+00 869.0
5 TraesCS7D01G487000 chr7D 78.413 1311 218 35 1116 2415 597654327 597653071 0.000000e+00 793.0
6 TraesCS7D01G487000 chr7D 81.925 426 63 8 966 1379 597580479 597580056 7.350000e-92 348.0
7 TraesCS7D01G487000 chr7D 81.143 175 26 4 2986 3160 99815545 99815378 2.240000e-27 134.0
8 TraesCS7D01G487000 chr7D 97.059 34 1 0 2594 2627 597621314 597621347 1.390000e-04 58.4
9 TraesCS7D01G487000 chr7A 94.635 2684 74 20 222 2894 690516413 690519037 0.000000e+00 4095.0
10 TraesCS7D01G487000 chr7A 90.805 957 73 4 1687 2630 690439280 690440234 0.000000e+00 1266.0
11 TraesCS7D01G487000 chr7A 82.529 1471 216 17 965 2415 690195926 690194477 0.000000e+00 1254.0
12 TraesCS7D01G487000 chr7A 80.608 1547 231 39 966 2467 690425219 690426741 0.000000e+00 1131.0
13 TraesCS7D01G487000 chr7A 91.840 674 47 4 966 1631 690438604 690439277 0.000000e+00 933.0
14 TraesCS7D01G487000 chr7A 78.009 1296 224 34 1130 2415 690399846 690401090 0.000000e+00 758.0
15 TraesCS7D01G487000 chr7A 95.949 395 15 1 3185 3578 690567742 690567348 1.080000e-179 640.0
16 TraesCS7D01G487000 chr7A 90.236 297 19 9 2851 3141 690518951 690519243 2.610000e-101 379.0
17 TraesCS7D01G487000 chr7A 88.889 225 9 7 1 222 690511626 690511837 2.740000e-66 263.0
18 TraesCS7D01G487000 chr7A 81.967 305 32 18 252 537 567433608 567433908 1.660000e-58 237.0
19 TraesCS7D01G487000 chr7A 77.488 422 70 14 208 610 676959313 676958898 2.780000e-56 230.0
20 TraesCS7D01G487000 chr7A 97.222 36 1 0 966 1001 690438557 690438592 1.070000e-05 62.1
21 TraesCS7D01G487000 chr7B 94.388 1675 84 3 966 2630 676535099 676533425 0.000000e+00 2564.0
22 TraesCS7D01G487000 chr7B 95.303 1384 60 3 1243 2622 676862213 676860831 0.000000e+00 2191.0
23 TraesCS7D01G487000 chr7B 91.649 1377 105 5 1214 2585 676993419 676994790 0.000000e+00 1897.0
24 TraesCS7D01G487000 chr7B 80.144 1526 238 40 966 2457 676452170 676453664 0.000000e+00 1079.0
25 TraesCS7D01G487000 chr7B 92.365 537 30 9 201 729 676862592 676863125 0.000000e+00 754.0
26 TraesCS7D01G487000 chr7B 89.558 498 38 10 201 692 676532592 676533081 1.410000e-173 619.0
27 TraesCS7D01G487000 chr7B 90.801 337 25 5 201 533 676859819 676860153 2.530000e-121 446.0
28 TraesCS7D01G487000 chr7B 90.149 335 31 2 633 967 676860378 676860710 5.490000e-118 435.0
29 TraesCS7D01G487000 chr7B 90.625 224 17 2 999 1218 676988247 676988470 9.710000e-76 294.0
30 TraesCS7D01G487000 chr7B 86.667 240 15 6 729 967 676533088 676533311 2.130000e-62 250.0
31 TraesCS7D01G487000 chr7B 91.608 143 10 2 825 966 676863140 676863281 2.820000e-46 196.0
32 TraesCS7D01G487000 chr7B 92.029 138 9 1 2495 2630 676863527 676863390 3.650000e-45 193.0
33 TraesCS7D01G487000 chr7B 100.000 34 0 0 969 1002 676862279 676862246 2.980000e-06 63.9
34 TraesCS7D01G487000 chr6B 94.014 969 31 10 2632 3578 184034074 184033111 0.000000e+00 1443.0
35 TraesCS7D01G487000 chr3D 91.042 960 44 18 2632 3578 611592511 611593441 0.000000e+00 1258.0
36 TraesCS7D01G487000 chr2B 91.424 653 44 9 323 967 754024190 754024838 0.000000e+00 885.0
37 TraesCS7D01G487000 chr5B 91.993 587 25 6 3009 3578 687028390 687028971 0.000000e+00 804.0
38 TraesCS7D01G487000 chr5B 96.154 52 2 0 48 99 465056030 465056081 6.360000e-13 86.1
39 TraesCS7D01G487000 chr5B 78.571 140 15 6 3031 3156 305600946 305601084 1.070000e-10 78.7
40 TraesCS7D01G487000 chr5B 84.507 71 6 5 531 596 117835551 117835621 8.290000e-07 65.8
41 TraesCS7D01G487000 chr5D 91.312 587 28 7 3009 3578 544630117 544630697 0.000000e+00 780.0
42 TraesCS7D01G487000 chr4A 88.363 507 52 5 370 873 693523673 693524175 1.420000e-168 603.0
43 TraesCS7D01G487000 chr6D 85.235 298 24 9 2924 3210 469582968 469582680 4.520000e-74 289.0
44 TraesCS7D01G487000 chr6D 88.235 204 19 2 2655 2853 469583559 469583356 4.620000e-59 239.0
45 TraesCS7D01G487000 chr6D 95.652 46 2 0 2851 2896 469583401 469583356 1.380000e-09 75.0
46 TraesCS7D01G487000 chr3B 76.304 460 44 28 2924 3327 308425590 308425140 6.100000e-43 185.0
47 TraesCS7D01G487000 chr3A 77.778 288 39 21 3234 3512 749608721 749608992 1.720000e-33 154.0
48 TraesCS7D01G487000 chr3A 82.099 162 20 6 208 364 52044723 52044880 2.900000e-26 130.0
49 TraesCS7D01G487000 chr5A 81.379 145 18 7 460 596 110660617 110660760 3.780000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G487000 chr7D 597543961 597547538 3577 True 6608.000000 6608 100.000000 1 3578 1 chr7D.!!$R3 3577
1 TraesCS7D01G487000 chr7D 597568713 597570393 1680 True 2292.000000 2292 91.454000 966 2630 1 chr7D.!!$R4 1664
2 TraesCS7D01G487000 chr7D 597619656 597621347 1691 False 1368.200000 2678 96.555000 966 2627 2 chr7D.!!$F1 1661
3 TraesCS7D01G487000 chr7D 597621429 597622182 753 True 1026.000000 1026 91.097000 201 970 1 chr7D.!!$R6 769
4 TraesCS7D01G487000 chr7D 514099851 514100444 593 True 869.000000 869 93.322000 2993 3578 1 chr7D.!!$R2 585
5 TraesCS7D01G487000 chr7D 597653071 597654327 1256 True 793.000000 793 78.413000 1116 2415 1 chr7D.!!$R7 1299
6 TraesCS7D01G487000 chr7A 690516413 690519243 2830 False 2237.000000 4095 92.435500 222 3141 2 chr7A.!!$F6 2919
7 TraesCS7D01G487000 chr7A 690194477 690195926 1449 True 1254.000000 1254 82.529000 965 2415 1 chr7A.!!$R2 1450
8 TraesCS7D01G487000 chr7A 690425219 690426741 1522 False 1131.000000 1131 80.608000 966 2467 1 chr7A.!!$F3 1501
9 TraesCS7D01G487000 chr7A 690399846 690401090 1244 False 758.000000 758 78.009000 1130 2415 1 chr7A.!!$F2 1285
10 TraesCS7D01G487000 chr7A 690438557 690440234 1677 False 753.700000 1266 93.289000 966 2630 3 chr7A.!!$F5 1664
11 TraesCS7D01G487000 chr7B 676533425 676535099 1674 True 2564.000000 2564 94.388000 966 2630 1 chr7B.!!$R1 1664
12 TraesCS7D01G487000 chr7B 676993419 676994790 1371 False 1897.000000 1897 91.649000 1214 2585 1 chr7B.!!$F3 1371
13 TraesCS7D01G487000 chr7B 676452170 676453664 1494 False 1079.000000 1079 80.144000 966 2457 1 chr7B.!!$F1 1491
14 TraesCS7D01G487000 chr7B 676860831 676863527 2696 True 815.966667 2191 95.777333 969 2630 3 chr7B.!!$R2 1661
15 TraesCS7D01G487000 chr7B 676859819 676863281 3462 False 457.750000 754 91.230750 201 967 4 chr7B.!!$F5 766
16 TraesCS7D01G487000 chr7B 676532592 676533311 719 False 434.500000 619 88.112500 201 967 2 chr7B.!!$F4 766
17 TraesCS7D01G487000 chr6B 184033111 184034074 963 True 1443.000000 1443 94.014000 2632 3578 1 chr6B.!!$R1 946
18 TraesCS7D01G487000 chr3D 611592511 611593441 930 False 1258.000000 1258 91.042000 2632 3578 1 chr3D.!!$F1 946
19 TraesCS7D01G487000 chr2B 754024190 754024838 648 False 885.000000 885 91.424000 323 967 1 chr2B.!!$F1 644
20 TraesCS7D01G487000 chr5B 687028390 687028971 581 False 804.000000 804 91.993000 3009 3578 1 chr5B.!!$F4 569
21 TraesCS7D01G487000 chr5D 544630117 544630697 580 False 780.000000 780 91.312000 3009 3578 1 chr5D.!!$F1 569
22 TraesCS7D01G487000 chr4A 693523673 693524175 502 False 603.000000 603 88.363000 370 873 1 chr4A.!!$F1 503
23 TraesCS7D01G487000 chr6D 469582680 469583559 879 True 201.000000 289 89.707333 2655 3210 3 chr6D.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.036483 AAATGAAATTGGGGGTGCGC 60.036 50.0 0.0 0.0 36.1 6.09 F
1168 4025 0.533531 CCTGCTGCTCAATGCCGATA 60.534 55.0 0.0 0.0 42.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 5036 1.886542 GGGAGAATGTGTTGAACCACC 59.113 52.381 0.0 0.0 34.35 4.61 R
2616 5645 0.031314 CGCTGTCGCTGACCATATCT 59.969 55.000 6.3 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.065110 GTGCACAGGAGTGAACCC 57.935 61.111 13.17 0.00 46.79 4.11
35 36 2.743928 CAGGAGTGAACCCTGCGC 60.744 66.667 0.00 0.00 43.93 6.09
36 37 4.021925 AGGAGTGAACCCTGCGCC 62.022 66.667 4.18 0.00 31.66 6.53
38 39 4.681978 GAGTGAACCCTGCGCCGT 62.682 66.667 4.18 0.00 0.00 5.68
39 40 4.681978 AGTGAACCCTGCGCCGTC 62.682 66.667 4.18 0.00 0.00 4.79
40 41 4.980805 GTGAACCCTGCGCCGTCA 62.981 66.667 4.18 0.00 0.00 4.35
41 42 4.980805 TGAACCCTGCGCCGTCAC 62.981 66.667 4.18 0.00 0.00 3.67
42 43 4.980805 GAACCCTGCGCCGTCACA 62.981 66.667 4.18 0.00 0.00 3.58
46 47 4.969196 CCTGCGCCGTCACACTGT 62.969 66.667 4.18 0.00 0.00 3.55
48 49 3.227372 CTGCGCCGTCACACTGTTG 62.227 63.158 4.18 0.00 0.00 3.33
49 50 4.666532 GCGCCGTCACACTGTTGC 62.667 66.667 0.00 0.00 0.00 4.17
50 51 2.967076 CGCCGTCACACTGTTGCT 60.967 61.111 0.00 0.00 0.00 3.91
51 52 2.534019 CGCCGTCACACTGTTGCTT 61.534 57.895 0.00 0.00 0.00 3.91
52 53 1.727467 GCCGTCACACTGTTGCTTT 59.273 52.632 0.00 0.00 0.00 3.51
54 55 1.859998 GCCGTCACACTGTTGCTTTTC 60.860 52.381 0.00 0.00 0.00 2.29
56 57 2.097466 CCGTCACACTGTTGCTTTTCTT 59.903 45.455 0.00 0.00 0.00 2.52
57 58 3.427503 CCGTCACACTGTTGCTTTTCTTT 60.428 43.478 0.00 0.00 0.00 2.52
59 60 4.728608 CGTCACACTGTTGCTTTTCTTTAC 59.271 41.667 0.00 0.00 0.00 2.01
61 62 6.265577 GTCACACTGTTGCTTTTCTTTACAT 58.734 36.000 0.00 0.00 0.00 2.29
64 65 6.531240 CACACTGTTGCTTTTCTTTACATGTT 59.469 34.615 2.30 0.00 0.00 2.71
65 66 6.531240 ACACTGTTGCTTTTCTTTACATGTTG 59.469 34.615 2.30 0.00 0.00 3.33
66 67 5.519927 ACTGTTGCTTTTCTTTACATGTTGC 59.480 36.000 2.30 0.00 0.00 4.17
67 68 5.659463 TGTTGCTTTTCTTTACATGTTGCT 58.341 33.333 2.30 0.00 0.00 3.91
68 69 6.105333 TGTTGCTTTTCTTTACATGTTGCTT 58.895 32.000 2.30 0.00 0.00 3.91
71 72 5.920273 TGCTTTTCTTTACATGTTGCTTAGC 59.080 36.000 2.30 0.00 0.00 3.09
72 73 6.152379 GCTTTTCTTTACATGTTGCTTAGCT 58.848 36.000 2.30 0.00 0.00 3.32
74 75 6.875948 TTTCTTTACATGTTGCTTAGCTGA 57.124 33.333 2.30 0.00 0.00 4.26
75 76 6.486253 TTCTTTACATGTTGCTTAGCTGAG 57.514 37.500 2.30 0.05 0.00 3.35
76 77 4.393062 TCTTTACATGTTGCTTAGCTGAGC 59.607 41.667 22.81 22.81 43.00 4.26
87 88 5.747951 GCTTAGCTGAGCATACTTTCATT 57.252 39.130 24.41 0.00 42.25 2.57
88 89 5.746539 GCTTAGCTGAGCATACTTTCATTC 58.253 41.667 24.41 0.00 42.25 2.67
89 90 5.526846 GCTTAGCTGAGCATACTTTCATTCT 59.473 40.000 24.41 0.00 42.25 2.40
91 92 4.450053 AGCTGAGCATACTTTCATTCTCC 58.550 43.478 7.39 0.00 0.00 3.71
92 93 4.163839 AGCTGAGCATACTTTCATTCTCCT 59.836 41.667 7.39 0.00 0.00 3.69
93 94 4.272991 GCTGAGCATACTTTCATTCTCCTG 59.727 45.833 0.00 0.00 0.00 3.86
95 96 4.133078 GAGCATACTTTCATTCTCCTGGG 58.867 47.826 0.00 0.00 0.00 4.45
97 98 3.629398 GCATACTTTCATTCTCCTGGGTG 59.371 47.826 0.00 0.00 0.00 4.61
98 99 2.206576 ACTTTCATTCTCCTGGGTGC 57.793 50.000 0.00 0.00 0.00 5.01
99 100 1.272147 ACTTTCATTCTCCTGGGTGCC 60.272 52.381 0.00 0.00 0.00 5.01
100 101 0.776810 TTTCATTCTCCTGGGTGCCA 59.223 50.000 0.00 0.00 0.00 4.92
101 102 1.002069 TTCATTCTCCTGGGTGCCAT 58.998 50.000 0.00 0.00 30.82 4.40
102 103 0.256752 TCATTCTCCTGGGTGCCATG 59.743 55.000 0.00 0.00 30.82 3.66
103 104 0.754217 CATTCTCCTGGGTGCCATGG 60.754 60.000 7.63 7.63 30.82 3.66
104 105 1.217057 ATTCTCCTGGGTGCCATGGT 61.217 55.000 14.67 0.00 30.82 3.55
105 106 0.548926 TTCTCCTGGGTGCCATGGTA 60.549 55.000 14.67 5.86 30.82 3.25
106 107 0.982852 TCTCCTGGGTGCCATGGTAG 60.983 60.000 14.67 4.55 30.82 3.18
109 110 2.204228 TGGGTGCCATGGTAGGGT 60.204 61.111 14.67 0.00 0.00 4.34
110 111 2.275418 GGGTGCCATGGTAGGGTG 59.725 66.667 14.67 0.00 0.00 4.61
111 112 2.440247 GGTGCCATGGTAGGGTGC 60.440 66.667 14.67 0.00 0.00 5.01
112 113 2.440247 GTGCCATGGTAGGGTGCC 60.440 66.667 14.67 0.00 0.00 5.01
114 115 2.124151 GCCATGGTAGGGTGCCTG 60.124 66.667 14.67 0.00 34.61 4.85
115 116 2.597340 CCATGGTAGGGTGCCTGG 59.403 66.667 2.57 0.00 34.61 4.45
116 117 2.597340 CATGGTAGGGTGCCTGGG 59.403 66.667 0.00 0.00 34.61 4.45
117 118 3.420482 ATGGTAGGGTGCCTGGGC 61.420 66.667 4.43 4.43 42.35 5.36
120 121 4.115199 GTAGGGTGCCTGGGCCTG 62.115 72.222 4.53 3.68 41.09 4.85
121 122 4.346889 TAGGGTGCCTGGGCCTGA 62.347 66.667 12.58 0.00 41.09 3.86
125 126 2.360475 GTGCCTGGGCCTGAAGAC 60.360 66.667 12.58 1.63 41.09 3.01
126 127 2.530151 TGCCTGGGCCTGAAGACT 60.530 61.111 12.58 0.00 41.09 3.24
128 129 1.676967 GCCTGGGCCTGAAGACTTG 60.677 63.158 12.58 0.00 34.56 3.16
130 131 0.984230 CCTGGGCCTGAAGACTTGTA 59.016 55.000 12.58 0.00 0.00 2.41
131 132 1.561542 CCTGGGCCTGAAGACTTGTAT 59.438 52.381 12.58 0.00 0.00 2.29
133 134 3.562176 CCTGGGCCTGAAGACTTGTATTT 60.562 47.826 12.58 0.00 0.00 1.40
135 136 5.249780 TGGGCCTGAAGACTTGTATTTAA 57.750 39.130 4.53 0.00 0.00 1.52
137 138 4.398358 GGGCCTGAAGACTTGTATTTAACC 59.602 45.833 0.84 0.00 0.00 2.85
138 139 5.254115 GGCCTGAAGACTTGTATTTAACCT 58.746 41.667 0.00 0.00 0.00 3.50
139 140 5.123979 GGCCTGAAGACTTGTATTTAACCTG 59.876 44.000 0.00 0.00 0.00 4.00
140 141 5.705905 GCCTGAAGACTTGTATTTAACCTGT 59.294 40.000 0.00 0.00 0.00 4.00
141 142 6.206829 GCCTGAAGACTTGTATTTAACCTGTT 59.793 38.462 0.00 0.00 0.00 3.16
142 143 7.255486 GCCTGAAGACTTGTATTTAACCTGTTT 60.255 37.037 0.00 0.00 0.00 2.83
147 148 8.488651 AGACTTGTATTTAACCTGTTTATCGG 57.511 34.615 0.00 0.00 0.00 4.18
148 149 8.098912 AGACTTGTATTTAACCTGTTTATCGGT 58.901 33.333 0.00 0.00 34.27 4.69
149 150 8.260270 ACTTGTATTTAACCTGTTTATCGGTC 57.740 34.615 0.00 0.00 31.87 4.79
151 152 8.851541 TTGTATTTAACCTGTTTATCGGTCTT 57.148 30.769 0.00 0.00 31.87 3.01
153 154 9.287373 TGTATTTAACCTGTTTATCGGTCTTTT 57.713 29.630 0.00 0.00 31.87 2.27
154 155 9.764870 GTATTTAACCTGTTTATCGGTCTTTTC 57.235 33.333 0.00 0.00 31.87 2.29
155 156 7.804843 TTTAACCTGTTTATCGGTCTTTTCA 57.195 32.000 0.00 0.00 31.87 2.69
156 157 7.989416 TTAACCTGTTTATCGGTCTTTTCAT 57.011 32.000 0.00 0.00 31.87 2.57
157 158 6.496338 AACCTGTTTATCGGTCTTTTCATC 57.504 37.500 0.00 0.00 31.87 2.92
158 159 5.805728 ACCTGTTTATCGGTCTTTTCATCT 58.194 37.500 0.00 0.00 0.00 2.90
159 160 6.942976 ACCTGTTTATCGGTCTTTTCATCTA 58.057 36.000 0.00 0.00 0.00 1.98
160 161 7.391620 ACCTGTTTATCGGTCTTTTCATCTAA 58.608 34.615 0.00 0.00 0.00 2.10
162 163 8.338259 CCTGTTTATCGGTCTTTTCATCTAATG 58.662 37.037 0.00 0.00 0.00 1.90
164 165 9.443323 TGTTTATCGGTCTTTTCATCTAATGAA 57.557 29.630 0.00 0.00 46.77 2.57
180 181 3.632643 ATGAAATGAAATTGGGGGTGC 57.367 42.857 0.00 0.00 36.10 5.01
182 183 0.036483 AAATGAAATTGGGGGTGCGC 60.036 50.000 0.00 0.00 36.10 6.09
183 184 1.898330 AATGAAATTGGGGGTGCGCC 61.898 55.000 8.12 8.12 33.44 6.53
194 195 1.976474 GGTGCGCCCCTCAATTCAA 60.976 57.895 4.45 0.00 0.00 2.69
195 196 1.531739 GGTGCGCCCCTCAATTCAAA 61.532 55.000 4.45 0.00 0.00 2.69
197 198 1.043816 TGCGCCCCTCAATTCAAAAA 58.956 45.000 4.18 0.00 0.00 1.94
535 3318 3.258123 ACGGTGCTTCCATTGCTAAAAAT 59.742 39.130 0.00 0.00 35.57 1.82
764 3555 7.763172 TTTTTGTAAGGCCGCAAATTATATG 57.237 32.000 18.79 0.00 34.99 1.78
844 3637 9.639563 TTGCCTAAATATATGGAGAACATTGAA 57.360 29.630 0.00 0.00 41.03 2.69
1057 3914 1.472878 TGTAACCAGAGAGCTAGCGTG 59.527 52.381 9.55 5.80 0.00 5.34
1068 3925 1.889829 AGCTAGCGTGTGTCTCTTCTT 59.110 47.619 9.55 0.00 0.00 2.52
1075 3932 3.060205 GCGTGTGTCTCTTCTTCTGTTTC 60.060 47.826 0.00 0.00 0.00 2.78
1168 4025 0.533531 CCTGCTGCTCAATGCCGATA 60.534 55.000 0.00 0.00 42.00 2.92
1749 4719 4.385825 TGCGTTCTTGGTCAACTTATTCT 58.614 39.130 0.00 0.00 0.00 2.40
2053 5036 2.435586 CCAGTTCGGCTGCCTCAG 60.436 66.667 17.92 0.88 43.71 3.35
2492 5485 8.732531 TCCCTTTGTAACAAAAATATAAGACGG 58.267 33.333 0.00 0.00 0.00 4.79
2615 5644 6.588719 TGCATTATTGGCTAGTCTTGTTTT 57.411 33.333 0.00 0.00 0.00 2.43
2616 5645 7.695480 TGCATTATTGGCTAGTCTTGTTTTA 57.305 32.000 0.00 0.00 0.00 1.52
2617 5646 7.761409 TGCATTATTGGCTAGTCTTGTTTTAG 58.239 34.615 0.00 0.00 0.00 1.85
2618 5647 7.609918 TGCATTATTGGCTAGTCTTGTTTTAGA 59.390 33.333 0.00 0.00 0.00 2.10
2619 5648 8.624776 GCATTATTGGCTAGTCTTGTTTTAGAT 58.375 33.333 0.00 0.00 0.00 1.98
2623 5652 8.682936 ATTGGCTAGTCTTGTTTTAGATATGG 57.317 34.615 0.00 0.00 0.00 2.74
2624 5653 7.195374 TGGCTAGTCTTGTTTTAGATATGGT 57.805 36.000 0.00 0.00 0.00 3.55
2625 5654 7.272978 TGGCTAGTCTTGTTTTAGATATGGTC 58.727 38.462 0.00 0.00 0.00 4.02
2626 5655 7.093068 TGGCTAGTCTTGTTTTAGATATGGTCA 60.093 37.037 0.00 0.00 0.00 4.02
2627 5656 7.439655 GGCTAGTCTTGTTTTAGATATGGTCAG 59.560 40.741 0.00 0.00 0.00 3.51
2628 5657 7.042389 GCTAGTCTTGTTTTAGATATGGTCAGC 60.042 40.741 0.00 0.00 0.00 4.26
2629 5658 5.812642 AGTCTTGTTTTAGATATGGTCAGCG 59.187 40.000 0.00 0.00 0.00 5.18
2630 5659 5.810587 GTCTTGTTTTAGATATGGTCAGCGA 59.189 40.000 0.00 0.00 0.00 4.93
2685 5714 5.338708 CCTCCCATCAGACTAGTGAAACATT 60.339 44.000 0.00 0.00 41.43 2.71
2811 5887 1.382146 GTCCCCTACCATCGTCCCA 60.382 63.158 0.00 0.00 0.00 4.37
2817 5893 1.687054 CCTACCATCGTCCCACACCTA 60.687 57.143 0.00 0.00 0.00 3.08
2894 6360 5.921962 ACAATCCCTTTGCTTCCTAATTC 57.078 39.130 0.00 0.00 39.03 2.17
2895 6361 4.711846 ACAATCCCTTTGCTTCCTAATTCC 59.288 41.667 0.00 0.00 39.03 3.01
2896 6362 3.382083 TCCCTTTGCTTCCTAATTCCC 57.618 47.619 0.00 0.00 0.00 3.97
2897 6363 2.024414 CCCTTTGCTTCCTAATTCCCG 58.976 52.381 0.00 0.00 0.00 5.14
2898 6364 1.405463 CCTTTGCTTCCTAATTCCCGC 59.595 52.381 0.00 0.00 0.00 6.13
2899 6365 2.091541 CTTTGCTTCCTAATTCCCGCA 58.908 47.619 0.00 0.00 0.00 5.69
2900 6366 1.459450 TTGCTTCCTAATTCCCGCAC 58.541 50.000 0.00 0.00 0.00 5.34
2901 6367 0.326595 TGCTTCCTAATTCCCGCACA 59.673 50.000 0.00 0.00 0.00 4.57
2902 6368 1.064758 TGCTTCCTAATTCCCGCACAT 60.065 47.619 0.00 0.00 0.00 3.21
2903 6369 1.334869 GCTTCCTAATTCCCGCACATG 59.665 52.381 0.00 0.00 0.00 3.21
2904 6370 2.643551 CTTCCTAATTCCCGCACATGT 58.356 47.619 0.00 0.00 0.00 3.21
2905 6371 2.799126 TCCTAATTCCCGCACATGTT 57.201 45.000 0.00 0.00 0.00 2.71
2906 6372 3.916359 TCCTAATTCCCGCACATGTTA 57.084 42.857 0.00 0.00 0.00 2.41
2907 6373 4.223556 TCCTAATTCCCGCACATGTTAA 57.776 40.909 0.00 0.00 0.00 2.01
2908 6374 4.787551 TCCTAATTCCCGCACATGTTAAT 58.212 39.130 0.00 0.00 0.00 1.40
2909 6375 5.197451 TCCTAATTCCCGCACATGTTAATT 58.803 37.500 0.00 0.85 0.00 1.40
2910 6376 6.358178 TCCTAATTCCCGCACATGTTAATTA 58.642 36.000 0.00 1.96 0.00 1.40
2911 6377 6.485313 TCCTAATTCCCGCACATGTTAATTAG 59.515 38.462 17.42 17.42 36.97 1.73
2912 6378 5.514274 AATTCCCGCACATGTTAATTAGG 57.486 39.130 0.00 0.00 0.00 2.69
2913 6379 3.916359 TCCCGCACATGTTAATTAGGA 57.084 42.857 0.00 0.00 0.00 2.94
2914 6380 4.223556 TCCCGCACATGTTAATTAGGAA 57.776 40.909 0.00 0.00 0.00 3.36
2915 6381 3.942748 TCCCGCACATGTTAATTAGGAAC 59.057 43.478 0.00 0.00 0.00 3.62
2916 6382 3.692101 CCCGCACATGTTAATTAGGAACA 59.308 43.478 0.00 0.00 40.88 3.18
2917 6383 4.156922 CCCGCACATGTTAATTAGGAACAA 59.843 41.667 0.00 0.00 40.07 2.83
2918 6384 5.163561 CCCGCACATGTTAATTAGGAACAAT 60.164 40.000 0.00 0.00 40.07 2.71
2919 6385 5.971202 CCGCACATGTTAATTAGGAACAATC 59.029 40.000 0.00 0.00 40.07 2.67
2920 6386 5.971202 CGCACATGTTAATTAGGAACAATCC 59.029 40.000 0.00 0.00 46.98 3.01
3028 6501 8.537728 TCATGCCAAATATCTTTTGTTATCCT 57.462 30.769 0.00 0.00 0.00 3.24
3180 6672 3.126171 TGCAGTCGGAACATATTTTTCGG 59.874 43.478 2.56 0.00 0.00 4.30
3181 6673 3.126343 GCAGTCGGAACATATTTTTCGGT 59.874 43.478 2.56 0.00 0.00 4.69
3182 6674 4.726876 GCAGTCGGAACATATTTTTCGGTC 60.727 45.833 2.56 0.00 0.00 4.79
3183 6675 3.615496 AGTCGGAACATATTTTTCGGTCG 59.385 43.478 2.56 0.00 0.00 4.79
3197 6689 2.410939 TCGGTCGTCGTATGGATAGAG 58.589 52.381 0.00 0.00 40.32 2.43
3295 6788 6.858993 ACGTTTGATGTACGCATTTACATTTT 59.141 30.769 4.58 0.00 41.78 1.82
3333 6826 4.466828 CAGAGGCAAACGAAAACATACAG 58.533 43.478 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.165437 GGTTCACTCCTGTGCACAAAAA 59.835 45.455 21.98 8.09 41.06 1.94
9 10 1.748493 GGTTCACTCCTGTGCACAAAA 59.252 47.619 21.98 10.70 41.06 2.44
10 11 1.388547 GGTTCACTCCTGTGCACAAA 58.611 50.000 21.98 11.08 41.06 2.83
13 14 0.886490 CAGGGTTCACTCCTGTGCAC 60.886 60.000 10.75 10.75 44.97 4.57
15 16 4.386413 CAGGGTTCACTCCTGTGC 57.614 61.111 2.21 0.00 44.97 4.57
19 20 4.021925 GGCGCAGGGTTCACTCCT 62.022 66.667 10.83 0.00 34.39 3.69
21 22 4.681978 ACGGCGCAGGGTTCACTC 62.682 66.667 13.26 0.00 0.00 3.51
22 23 4.681978 GACGGCGCAGGGTTCACT 62.682 66.667 13.26 0.00 0.00 3.41
23 24 4.980805 TGACGGCGCAGGGTTCAC 62.981 66.667 13.26 0.00 0.00 3.18
25 26 4.980805 TGTGACGGCGCAGGGTTC 62.981 66.667 13.26 0.72 0.00 3.62
29 30 4.969196 ACAGTGTGACGGCGCAGG 62.969 66.667 3.75 2.69 34.72 4.85
30 31 2.967076 AACAGTGTGACGGCGCAG 60.967 61.111 3.75 8.25 34.72 5.18
32 33 4.666532 GCAACAGTGTGACGGCGC 62.667 66.667 6.90 0.00 0.00 6.53
33 34 2.047151 AAAGCAACAGTGTGACGGCG 62.047 55.000 4.80 4.80 0.00 6.46
34 35 0.100503 AAAAGCAACAGTGTGACGGC 59.899 50.000 0.00 0.00 0.00 5.68
35 36 1.670811 AGAAAAGCAACAGTGTGACGG 59.329 47.619 0.00 0.00 0.00 4.79
36 37 3.405170 AAGAAAAGCAACAGTGTGACG 57.595 42.857 0.00 0.00 0.00 4.35
37 38 5.636837 TGTAAAGAAAAGCAACAGTGTGAC 58.363 37.500 0.00 0.00 0.00 3.67
38 39 5.888691 TGTAAAGAAAAGCAACAGTGTGA 57.111 34.783 0.00 0.00 0.00 3.58
39 40 6.035843 ACATGTAAAGAAAAGCAACAGTGTG 58.964 36.000 0.00 0.00 0.00 3.82
40 41 6.207691 ACATGTAAAGAAAAGCAACAGTGT 57.792 33.333 0.00 0.00 0.00 3.55
41 42 6.508404 GCAACATGTAAAGAAAAGCAACAGTG 60.508 38.462 0.00 0.00 0.00 3.66
42 43 5.519927 GCAACATGTAAAGAAAAGCAACAGT 59.480 36.000 0.00 0.00 0.00 3.55
43 44 5.750067 AGCAACATGTAAAGAAAAGCAACAG 59.250 36.000 0.00 0.00 0.00 3.16
44 45 5.659463 AGCAACATGTAAAGAAAAGCAACA 58.341 33.333 0.00 0.00 0.00 3.33
45 46 6.588348 AAGCAACATGTAAAGAAAAGCAAC 57.412 33.333 0.00 0.00 0.00 4.17
46 47 6.420604 GCTAAGCAACATGTAAAGAAAAGCAA 59.579 34.615 0.00 0.00 0.00 3.91
48 49 6.088616 CAGCTAAGCAACATGTAAAGAAAAGC 59.911 38.462 0.00 3.21 0.00 3.51
49 50 7.362662 TCAGCTAAGCAACATGTAAAGAAAAG 58.637 34.615 0.00 0.00 0.00 2.27
50 51 7.270757 TCAGCTAAGCAACATGTAAAGAAAA 57.729 32.000 0.00 0.00 0.00 2.29
51 52 6.568462 GCTCAGCTAAGCAACATGTAAAGAAA 60.568 38.462 3.20 0.00 42.05 2.52
52 53 5.106555 GCTCAGCTAAGCAACATGTAAAGAA 60.107 40.000 3.20 0.00 42.05 2.52
54 55 4.656041 GCTCAGCTAAGCAACATGTAAAG 58.344 43.478 3.20 0.00 42.05 1.85
65 66 5.526846 AGAATGAAAGTATGCTCAGCTAAGC 59.473 40.000 0.32 0.32 42.82 3.09
66 67 6.202570 GGAGAATGAAAGTATGCTCAGCTAAG 59.797 42.308 0.00 0.00 34.86 2.18
67 68 6.051717 GGAGAATGAAAGTATGCTCAGCTAA 58.948 40.000 0.00 0.00 34.86 3.09
68 69 5.365025 AGGAGAATGAAAGTATGCTCAGCTA 59.635 40.000 0.00 0.00 34.86 3.32
71 72 4.815308 CCAGGAGAATGAAAGTATGCTCAG 59.185 45.833 0.00 0.00 34.86 3.35
72 73 4.384537 CCCAGGAGAATGAAAGTATGCTCA 60.385 45.833 0.00 0.00 34.86 4.26
74 75 3.525199 ACCCAGGAGAATGAAAGTATGCT 59.475 43.478 0.00 0.00 0.00 3.79
75 76 3.629398 CACCCAGGAGAATGAAAGTATGC 59.371 47.826 0.00 0.00 0.00 3.14
76 77 3.629398 GCACCCAGGAGAATGAAAGTATG 59.371 47.826 0.00 0.00 0.00 2.39
78 79 2.026262 GGCACCCAGGAGAATGAAAGTA 60.026 50.000 0.00 0.00 0.00 2.24
79 80 1.272147 GGCACCCAGGAGAATGAAAGT 60.272 52.381 0.00 0.00 0.00 2.66
81 82 0.776810 TGGCACCCAGGAGAATGAAA 59.223 50.000 0.00 0.00 0.00 2.69
82 83 1.002069 ATGGCACCCAGGAGAATGAA 58.998 50.000 0.00 0.00 36.75 2.57
83 84 0.256752 CATGGCACCCAGGAGAATGA 59.743 55.000 0.00 0.00 37.52 2.57
84 85 0.754217 CCATGGCACCCAGGAGAATG 60.754 60.000 0.00 0.00 37.52 2.67
87 88 0.982852 CTACCATGGCACCCAGGAGA 60.983 60.000 13.04 0.00 37.52 3.71
88 89 1.528824 CTACCATGGCACCCAGGAG 59.471 63.158 13.04 0.00 37.52 3.69
89 90 2.000701 CCTACCATGGCACCCAGGA 61.001 63.158 13.04 0.00 37.52 3.86
91 92 2.308722 ACCCTACCATGGCACCCAG 61.309 63.158 13.04 1.24 36.75 4.45
92 93 2.204228 ACCCTACCATGGCACCCA 60.204 61.111 13.04 0.00 38.19 4.51
93 94 2.275418 CACCCTACCATGGCACCC 59.725 66.667 13.04 0.00 0.00 4.61
95 96 2.440247 GGCACCCTACCATGGCAC 60.440 66.667 13.04 0.00 40.91 5.01
97 98 2.124151 CAGGCACCCTACCATGGC 60.124 66.667 13.04 0.00 41.52 4.40
98 99 2.597340 CCAGGCACCCTACCATGG 59.403 66.667 11.19 11.19 29.64 3.66
99 100 2.597340 CCCAGGCACCCTACCATG 59.403 66.667 0.00 0.00 29.64 3.66
100 101 3.420482 GCCCAGGCACCCTACCAT 61.420 66.667 3.12 0.00 41.49 3.55
103 104 4.115199 CAGGCCCAGGCACCCTAC 62.115 72.222 11.50 0.00 44.11 3.18
104 105 3.881926 TTCAGGCCCAGGCACCCTA 62.882 63.158 11.50 0.00 44.11 3.53
106 107 4.748144 CTTCAGGCCCAGGCACCC 62.748 72.222 11.50 0.00 44.11 4.61
109 110 2.156098 AAGTCTTCAGGCCCAGGCA 61.156 57.895 11.50 0.00 44.11 4.75
110 111 1.676967 CAAGTCTTCAGGCCCAGGC 60.677 63.158 0.00 0.00 41.06 4.85
111 112 0.984230 TACAAGTCTTCAGGCCCAGG 59.016 55.000 0.00 0.00 0.00 4.45
112 113 3.356529 AATACAAGTCTTCAGGCCCAG 57.643 47.619 0.00 0.00 0.00 4.45
114 115 4.398358 GGTTAAATACAAGTCTTCAGGCCC 59.602 45.833 0.00 0.00 0.00 5.80
115 116 5.123979 CAGGTTAAATACAAGTCTTCAGGCC 59.876 44.000 0.00 0.00 0.00 5.19
116 117 5.705905 ACAGGTTAAATACAAGTCTTCAGGC 59.294 40.000 0.00 0.00 0.00 4.85
117 118 7.745620 AACAGGTTAAATACAAGTCTTCAGG 57.254 36.000 0.00 0.00 0.00 3.86
120 121 9.968743 CGATAAACAGGTTAAATACAAGTCTTC 57.031 33.333 0.00 0.00 0.00 2.87
121 122 8.943002 CCGATAAACAGGTTAAATACAAGTCTT 58.057 33.333 0.00 0.00 0.00 3.01
125 126 8.488651 AGACCGATAAACAGGTTAAATACAAG 57.511 34.615 0.00 0.00 41.51 3.16
126 127 8.851541 AAGACCGATAAACAGGTTAAATACAA 57.148 30.769 0.00 0.00 41.51 2.41
128 129 9.764870 GAAAAGACCGATAAACAGGTTAAATAC 57.235 33.333 0.00 0.00 41.51 1.89
130 131 8.398878 TGAAAAGACCGATAAACAGGTTAAAT 57.601 30.769 0.00 0.00 41.51 1.40
131 132 7.804843 TGAAAAGACCGATAAACAGGTTAAA 57.195 32.000 0.00 0.00 41.51 1.52
133 134 7.391620 AGATGAAAAGACCGATAAACAGGTTA 58.608 34.615 0.00 0.00 41.51 2.85
135 136 5.805728 AGATGAAAAGACCGATAAACAGGT 58.194 37.500 0.00 0.00 44.64 4.00
137 138 9.098355 TCATTAGATGAAAAGACCGATAAACAG 57.902 33.333 0.00 0.00 36.11 3.16
138 139 9.443323 TTCATTAGATGAAAAGACCGATAAACA 57.557 29.630 1.10 0.00 45.57 2.83
153 154 6.902416 ACCCCCAATTTCATTTCATTAGATGA 59.098 34.615 0.00 0.00 37.55 2.92
154 155 6.987992 CACCCCCAATTTCATTTCATTAGATG 59.012 38.462 0.00 0.00 0.00 2.90
155 156 6.408434 GCACCCCCAATTTCATTTCATTAGAT 60.408 38.462 0.00 0.00 0.00 1.98
156 157 5.104982 GCACCCCCAATTTCATTTCATTAGA 60.105 40.000 0.00 0.00 0.00 2.10
157 158 5.118286 GCACCCCCAATTTCATTTCATTAG 58.882 41.667 0.00 0.00 0.00 1.73
158 159 4.382470 CGCACCCCCAATTTCATTTCATTA 60.382 41.667 0.00 0.00 0.00 1.90
159 160 3.619487 CGCACCCCCAATTTCATTTCATT 60.619 43.478 0.00 0.00 0.00 2.57
160 161 2.093553 CGCACCCCCAATTTCATTTCAT 60.094 45.455 0.00 0.00 0.00 2.57
162 163 2.006552 GCGCACCCCCAATTTCATTTC 61.007 52.381 0.30 0.00 0.00 2.17
164 165 1.596408 GCGCACCCCCAATTTCATT 59.404 52.632 0.30 0.00 0.00 2.57
165 166 2.358372 GGCGCACCCCCAATTTCAT 61.358 57.895 10.83 0.00 0.00 2.57
166 167 2.994417 GGCGCACCCCCAATTTCA 60.994 61.111 10.83 0.00 0.00 2.69
176 177 1.531739 TTTGAATTGAGGGGCGCACC 61.532 55.000 24.88 24.88 39.11 5.01
320 324 2.552315 GTCCAACGAGATTGCTTCCAAA 59.448 45.455 0.00 0.00 36.93 3.28
684 3475 3.228188 AGGAACTGCTTCAATGTGGAA 57.772 42.857 0.00 0.00 37.18 3.53
878 3671 3.035363 TGGAGCTGATTACGTGGGATTA 58.965 45.455 0.00 0.00 0.00 1.75
1057 3914 3.385577 AGCGAAACAGAAGAAGAGACAC 58.614 45.455 0.00 0.00 0.00 3.67
1168 4025 4.530857 GCAGCCGCACGACCCTAT 62.531 66.667 0.00 0.00 38.36 2.57
2053 5036 1.886542 GGGAGAATGTGTTGAACCACC 59.113 52.381 0.00 0.00 34.35 4.61
2615 5644 1.266989 CGCTGTCGCTGACCATATCTA 59.733 52.381 6.30 0.00 0.00 1.98
2616 5645 0.031314 CGCTGTCGCTGACCATATCT 59.969 55.000 6.30 0.00 0.00 1.98
2617 5646 0.941463 CCGCTGTCGCTGACCATATC 60.941 60.000 6.30 0.00 0.00 1.63
2618 5647 1.068083 CCGCTGTCGCTGACCATAT 59.932 57.895 6.30 0.00 0.00 1.78
2619 5648 1.033202 TACCGCTGTCGCTGACCATA 61.033 55.000 6.30 0.00 0.00 2.74
2620 5649 2.284798 CTACCGCTGTCGCTGACCAT 62.285 60.000 6.30 0.00 0.00 3.55
2621 5650 2.986979 TACCGCTGTCGCTGACCA 60.987 61.111 6.30 0.00 0.00 4.02
2622 5651 2.202623 CTACCGCTGTCGCTGACC 60.203 66.667 6.30 0.00 0.00 4.02
2623 5652 2.202623 CCTACCGCTGTCGCTGAC 60.203 66.667 2.32 2.32 0.00 3.51
2624 5653 3.449227 CCCTACCGCTGTCGCTGA 61.449 66.667 0.00 0.00 0.00 4.26
2625 5654 2.298158 AATCCCTACCGCTGTCGCTG 62.298 60.000 0.00 0.00 0.00 5.18
2626 5655 0.754217 TAATCCCTACCGCTGTCGCT 60.754 55.000 0.00 0.00 0.00 4.93
2627 5656 0.318784 CTAATCCCTACCGCTGTCGC 60.319 60.000 0.00 0.00 0.00 5.19
2628 5657 1.001597 GTCTAATCCCTACCGCTGTCG 60.002 57.143 0.00 0.00 0.00 4.35
2629 5658 2.308690 AGTCTAATCCCTACCGCTGTC 58.691 52.381 0.00 0.00 0.00 3.51
2630 5659 2.456073 AGTCTAATCCCTACCGCTGT 57.544 50.000 0.00 0.00 0.00 4.40
2685 5714 5.336770 CGGCTATGATGCTTCTAATCCTACA 60.337 44.000 0.88 0.00 0.00 2.74
2830 5906 5.393866 GGGAATTAGGATGCAAAGGGATTA 58.606 41.667 0.00 0.00 0.00 1.75
2894 6360 3.692101 TGTTCCTAATTAACATGTGCGGG 59.308 43.478 0.00 0.00 32.07 6.13
2895 6361 4.955925 TGTTCCTAATTAACATGTGCGG 57.044 40.909 0.00 0.00 32.07 5.69
2896 6362 5.971202 GGATTGTTCCTAATTAACATGTGCG 59.029 40.000 0.00 0.00 39.14 5.34
2897 6363 6.096846 AGGGATTGTTCCTAATTAACATGTGC 59.903 38.462 0.00 0.00 42.20 4.57
2898 6364 7.645058 AGGGATTGTTCCTAATTAACATGTG 57.355 36.000 0.00 0.00 42.20 3.21
2899 6365 8.531146 CAAAGGGATTGTTCCTAATTAACATGT 58.469 33.333 0.00 0.00 42.20 3.21
2900 6366 7.492344 GCAAAGGGATTGTTCCTAATTAACATG 59.508 37.037 0.00 0.00 42.20 3.21
2901 6367 7.400052 AGCAAAGGGATTGTTCCTAATTAACAT 59.600 33.333 0.00 0.00 42.20 2.71
2902 6368 6.723977 AGCAAAGGGATTGTTCCTAATTAACA 59.276 34.615 0.00 0.00 42.20 2.41
2903 6369 7.170393 AGCAAAGGGATTGTTCCTAATTAAC 57.830 36.000 0.00 0.00 42.20 2.01
2904 6370 7.093509 GGAAGCAAAGGGATTGTTCCTAATTAA 60.094 37.037 11.72 0.00 41.27 1.40
2905 6371 6.379988 GGAAGCAAAGGGATTGTTCCTAATTA 59.620 38.462 11.72 0.00 41.27 1.40
2906 6372 5.187772 GGAAGCAAAGGGATTGTTCCTAATT 59.812 40.000 11.72 0.00 41.27 1.40
2907 6373 4.711846 GGAAGCAAAGGGATTGTTCCTAAT 59.288 41.667 11.72 0.00 41.27 1.73
2908 6374 4.086457 GGAAGCAAAGGGATTGTTCCTAA 58.914 43.478 11.72 0.00 41.27 2.69
2909 6375 3.333680 AGGAAGCAAAGGGATTGTTCCTA 59.666 43.478 16.39 0.00 46.32 2.94
2910 6376 2.110721 AGGAAGCAAAGGGATTGTTCCT 59.889 45.455 14.05 14.05 45.04 3.36
2911 6377 2.529632 AGGAAGCAAAGGGATTGTTCC 58.470 47.619 11.33 11.33 42.86 3.62
2912 6378 4.972514 CTAGGAAGCAAAGGGATTGTTC 57.027 45.455 0.00 0.00 41.32 3.18
3295 6788 5.252547 TGCCTCTGCACAATTTATTCTACA 58.747 37.500 0.00 0.00 44.23 2.74
3327 6820 5.820423 TCAAATAAATCGGTGTCCCTGTATG 59.180 40.000 0.00 0.00 0.00 2.39
3333 6826 7.066525 TGTTCTTATCAAATAAATCGGTGTCCC 59.933 37.037 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.