Multiple sequence alignment - TraesCS7D01G486500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G486500 chr7D 100.000 3866 0 0 1 3866 596874762 596878627 0.000000e+00 7140.0
1 TraesCS7D01G486500 chr7B 95.293 2677 105 13 616 3291 675380302 675382958 0.000000e+00 4226.0
2 TraesCS7D01G486500 chr7B 90.237 379 16 6 3334 3700 675384277 675384646 3.500000e-130 475.0
3 TraesCS7D01G486500 chr7A 95.793 2496 96 3 617 3105 689945178 689947671 0.000000e+00 4019.0
4 TraesCS7D01G486500 chr7A 88.930 542 31 15 3334 3863 689948578 689949102 3.260000e-180 641.0
5 TraesCS7D01G486500 chr5D 98.812 421 5 0 55 475 80800553 80800133 0.000000e+00 750.0
6 TraesCS7D01G486500 chr5D 97.436 39 1 0 1 39 80800634 80800596 2.490000e-07 67.6
7 TraesCS7D01G486500 chr6B 94.444 36 1 1 2892 2927 152194256 152194290 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G486500 chr7D 596874762 596878627 3865 False 7140.0 7140 100.0000 1 3866 1 chr7D.!!$F1 3865
1 TraesCS7D01G486500 chr7B 675380302 675384646 4344 False 2350.5 4226 92.7650 616 3700 2 chr7B.!!$F1 3084
2 TraesCS7D01G486500 chr7A 689945178 689949102 3924 False 2330.0 4019 92.3615 617 3863 2 chr7A.!!$F1 3246
3 TraesCS7D01G486500 chr5D 80800133 80800634 501 True 408.8 750 98.1240 1 475 2 chr5D.!!$R1 474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 604 0.312102 GCTGTGGCCTTGTTCAAGAC 59.688 55.0 13.29 2.46 0.0 3.01 F
1391 1419 0.179215 GCTGCGGTCAAGATGTTTCG 60.179 55.0 0.00 0.00 0.0 3.46 F
1624 1652 1.293924 CACCATGCCAGTTCGAGATC 58.706 55.0 0.00 0.00 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2086 0.321671 GACTACAGGCAGCCAACAGA 59.678 55.0 15.80 0.00 0.00 3.41 R
2265 2293 0.322816 GAATCCTGCAAGCACCCAGA 60.323 55.0 0.00 0.00 0.00 3.86 R
3319 3356 0.390603 CAGTACCGGCGGTTGATCAA 60.391 55.0 38.73 15.86 37.09 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.735559 GTTGCGTCACCGGAGTACC 60.736 63.158 9.46 0.00 35.23 3.34
132 160 2.625973 TTTTGCAACACCGGCAGCAG 62.626 55.000 0.00 0.00 43.05 4.24
422 450 1.443194 GGACGCGTGTCGAAAGCTA 60.443 57.895 20.70 0.00 46.49 3.32
475 503 7.287235 TCCGGTTGATTTTAAACCTTTTCCTTA 59.713 33.333 0.00 0.00 44.16 2.69
476 504 7.927092 CCGGTTGATTTTAAACCTTTTCCTTAA 59.073 33.333 0.00 0.00 44.16 1.85
477 505 9.315525 CGGTTGATTTTAAACCTTTTCCTTAAA 57.684 29.630 4.01 0.00 44.16 1.52
506 534 9.241317 AGTGATTTGTATTATAACTTACGGACG 57.759 33.333 0.00 0.00 0.00 4.79
507 535 9.236691 GTGATTTGTATTATAACTTACGGACGA 57.763 33.333 0.00 0.00 0.00 4.20
508 536 9.970395 TGATTTGTATTATAACTTACGGACGAT 57.030 29.630 0.00 0.00 0.00 3.73
510 538 9.970395 ATTTGTATTATAACTTACGGACGATCA 57.030 29.630 0.00 0.00 0.00 2.92
511 539 9.800433 TTTGTATTATAACTTACGGACGATCAA 57.200 29.630 0.00 0.00 0.00 2.57
512 540 9.454585 TTGTATTATAACTTACGGACGATCAAG 57.545 33.333 0.00 1.77 0.00 3.02
513 541 8.623903 TGTATTATAACTTACGGACGATCAAGT 58.376 33.333 0.00 2.38 32.73 3.16
514 542 9.455847 GTATTATAACTTACGGACGATCAAGTT 57.544 33.333 19.10 19.10 42.32 2.66
517 545 9.853555 TTATAACTTACGGACGATCAAGTTAAA 57.146 29.630 21.71 17.03 43.13 1.52
518 546 8.761575 ATAACTTACGGACGATCAAGTTAAAA 57.238 30.769 21.71 11.30 43.13 1.52
519 547 6.457851 ACTTACGGACGATCAAGTTAAAAC 57.542 37.500 0.00 0.00 0.00 2.43
520 548 5.117592 ACTTACGGACGATCAAGTTAAAACG 59.882 40.000 0.00 0.00 0.00 3.60
521 549 3.383761 ACGGACGATCAAGTTAAAACGT 58.616 40.909 0.00 0.00 36.71 3.99
522 550 4.545610 ACGGACGATCAAGTTAAAACGTA 58.454 39.130 0.00 0.00 34.26 3.57
523 551 4.981674 ACGGACGATCAAGTTAAAACGTAA 59.018 37.500 0.00 0.00 34.26 3.18
524 552 5.461737 ACGGACGATCAAGTTAAAACGTAAA 59.538 36.000 0.00 0.00 34.26 2.01
525 553 6.019156 ACGGACGATCAAGTTAAAACGTAAAA 60.019 34.615 0.00 0.00 34.26 1.52
526 554 6.845280 CGGACGATCAAGTTAAAACGTAAAAA 59.155 34.615 0.00 0.00 34.26 1.94
527 555 7.057566 CGGACGATCAAGTTAAAACGTAAAAAG 59.942 37.037 0.00 0.00 34.26 2.27
528 556 8.063630 GGACGATCAAGTTAAAACGTAAAAAGA 58.936 33.333 0.00 0.00 34.26 2.52
529 557 9.590088 GACGATCAAGTTAAAACGTAAAAAGAT 57.410 29.630 0.00 0.00 34.26 2.40
530 558 9.377383 ACGATCAAGTTAAAACGTAAAAAGATG 57.623 29.630 0.00 0.00 32.42 2.90
531 559 9.377383 CGATCAAGTTAAAACGTAAAAAGATGT 57.623 29.630 0.00 0.00 0.00 3.06
534 562 8.800031 TCAAGTTAAAACGTAAAAAGATGTTGC 58.200 29.630 0.00 0.00 0.00 4.17
535 563 8.803799 CAAGTTAAAACGTAAAAAGATGTTGCT 58.196 29.630 0.00 0.00 0.00 3.91
540 568 6.986424 AACGTAAAAAGATGTTGCTAAAGC 57.014 33.333 0.00 0.00 42.50 3.51
541 569 5.458015 ACGTAAAAAGATGTTGCTAAAGCC 58.542 37.500 0.00 0.00 41.18 4.35
542 570 5.009210 ACGTAAAAAGATGTTGCTAAAGCCA 59.991 36.000 0.00 0.00 41.18 4.75
543 571 5.342259 CGTAAAAAGATGTTGCTAAAGCCAC 59.658 40.000 0.00 0.00 41.18 5.01
552 580 6.299023 TGTTGCTAAAGCCACATTATATCG 57.701 37.500 4.87 0.00 41.03 2.92
553 581 6.052360 TGTTGCTAAAGCCACATTATATCGA 58.948 36.000 4.87 0.00 41.03 3.59
554 582 6.540551 TGTTGCTAAAGCCACATTATATCGAA 59.459 34.615 4.87 0.00 41.03 3.71
555 583 7.066404 TGTTGCTAAAGCCACATTATATCGAAA 59.934 33.333 4.87 0.00 41.03 3.46
556 584 7.189693 TGCTAAAGCCACATTATATCGAAAG 57.810 36.000 0.00 0.00 41.18 2.62
557 585 6.204688 TGCTAAAGCCACATTATATCGAAAGG 59.795 38.462 0.00 0.00 41.18 3.11
558 586 5.438761 AAAGCCACATTATATCGAAAGGC 57.561 39.130 0.00 0.00 41.08 4.35
559 587 4.357918 AGCCACATTATATCGAAAGGCT 57.642 40.909 0.00 0.00 45.71 4.58
560 588 4.410492 GCCACATTATATCGAAAGGCTG 57.590 45.455 0.00 0.00 37.89 4.85
561 589 3.815401 GCCACATTATATCGAAAGGCTGT 59.185 43.478 0.00 0.00 37.89 4.40
562 590 4.319766 GCCACATTATATCGAAAGGCTGTG 60.320 45.833 11.59 11.59 37.89 3.66
563 591 4.214119 CCACATTATATCGAAAGGCTGTGG 59.786 45.833 19.04 19.04 44.36 4.17
564 592 3.815401 ACATTATATCGAAAGGCTGTGGC 59.185 43.478 0.00 0.00 37.82 5.01
575 603 2.719376 GCTGTGGCCTTGTTCAAGA 58.281 52.632 13.29 0.00 0.00 3.02
576 604 0.312102 GCTGTGGCCTTGTTCAAGAC 59.688 55.000 13.29 2.46 0.00 3.01
577 605 1.679139 CTGTGGCCTTGTTCAAGACA 58.321 50.000 13.29 9.04 36.19 3.41
578 606 2.233271 CTGTGGCCTTGTTCAAGACAT 58.767 47.619 13.29 0.00 38.26 3.06
579 607 2.227388 CTGTGGCCTTGTTCAAGACATC 59.773 50.000 13.29 7.84 38.26 3.06
580 608 2.229792 GTGGCCTTGTTCAAGACATCA 58.770 47.619 13.29 4.30 38.26 3.07
581 609 2.622942 GTGGCCTTGTTCAAGACATCAA 59.377 45.455 13.29 0.00 38.26 2.57
582 610 2.886523 TGGCCTTGTTCAAGACATCAAG 59.113 45.455 13.29 0.00 38.26 3.02
583 611 3.149196 GGCCTTGTTCAAGACATCAAGA 58.851 45.455 13.29 0.00 39.39 3.02
584 612 3.760684 GGCCTTGTTCAAGACATCAAGAT 59.239 43.478 13.29 0.00 39.39 2.40
585 613 4.380233 GGCCTTGTTCAAGACATCAAGATG 60.380 45.833 13.29 8.45 44.15 2.90
586 614 4.456911 GCCTTGTTCAAGACATCAAGATGA 59.543 41.667 16.39 0.00 41.20 2.92
587 615 5.048504 GCCTTGTTCAAGACATCAAGATGAA 60.049 40.000 16.39 0.00 41.20 2.57
588 616 6.609533 CCTTGTTCAAGACATCAAGATGAAG 58.390 40.000 16.39 6.90 41.20 3.02
589 617 5.618056 TGTTCAAGACATCAAGATGAAGC 57.382 39.130 16.39 5.82 41.20 3.86
590 618 5.311265 TGTTCAAGACATCAAGATGAAGCT 58.689 37.500 16.39 7.76 41.20 3.74
591 619 6.466812 TGTTCAAGACATCAAGATGAAGCTA 58.533 36.000 16.39 0.00 41.20 3.32
592 620 6.592994 TGTTCAAGACATCAAGATGAAGCTAG 59.407 38.462 16.39 0.00 41.20 3.42
593 621 5.114780 TCAAGACATCAAGATGAAGCTAGC 58.885 41.667 16.39 6.62 41.20 3.42
594 622 4.750021 AGACATCAAGATGAAGCTAGCA 57.250 40.909 18.83 0.00 41.20 3.49
595 623 5.095145 AGACATCAAGATGAAGCTAGCAA 57.905 39.130 18.83 1.95 41.20 3.91
596 624 5.494724 AGACATCAAGATGAAGCTAGCAAA 58.505 37.500 18.83 1.54 41.20 3.68
597 625 5.942236 AGACATCAAGATGAAGCTAGCAAAA 59.058 36.000 18.83 1.13 41.20 2.44
598 626 6.602406 AGACATCAAGATGAAGCTAGCAAAAT 59.398 34.615 18.83 6.62 41.20 1.82
599 627 7.772292 AGACATCAAGATGAAGCTAGCAAAATA 59.228 33.333 18.83 0.00 41.20 1.40
600 628 8.284945 ACATCAAGATGAAGCTAGCAAAATAA 57.715 30.769 18.83 0.00 41.20 1.40
601 629 8.404000 ACATCAAGATGAAGCTAGCAAAATAAG 58.596 33.333 18.83 0.35 41.20 1.73
602 630 8.618677 CATCAAGATGAAGCTAGCAAAATAAGA 58.381 33.333 18.83 6.14 41.20 2.10
603 631 7.978982 TCAAGATGAAGCTAGCAAAATAAGAC 58.021 34.615 18.83 0.00 0.00 3.01
604 632 7.607607 TCAAGATGAAGCTAGCAAAATAAGACA 59.392 33.333 18.83 3.71 0.00 3.41
605 633 7.928307 AGATGAAGCTAGCAAAATAAGACAA 57.072 32.000 18.83 0.00 0.00 3.18
606 634 7.983307 AGATGAAGCTAGCAAAATAAGACAAG 58.017 34.615 18.83 0.00 0.00 3.16
607 635 6.500684 TGAAGCTAGCAAAATAAGACAAGG 57.499 37.500 18.83 0.00 0.00 3.61
608 636 6.237901 TGAAGCTAGCAAAATAAGACAAGGA 58.762 36.000 18.83 0.00 0.00 3.36
609 637 6.714810 TGAAGCTAGCAAAATAAGACAAGGAA 59.285 34.615 18.83 0.00 0.00 3.36
610 638 6.502136 AGCTAGCAAAATAAGACAAGGAAC 57.498 37.500 18.83 0.00 0.00 3.62
611 639 6.003950 AGCTAGCAAAATAAGACAAGGAACA 58.996 36.000 18.83 0.00 0.00 3.18
612 640 6.072452 AGCTAGCAAAATAAGACAAGGAACAC 60.072 38.462 18.83 0.00 0.00 3.32
613 641 5.453567 AGCAAAATAAGACAAGGAACACC 57.546 39.130 0.00 0.00 0.00 4.16
614 642 4.892934 AGCAAAATAAGACAAGGAACACCA 59.107 37.500 0.00 0.00 0.00 4.17
986 1014 4.767255 CGTGGAGGAGGCCAGCAC 62.767 72.222 5.01 0.00 38.95 4.40
1006 1034 1.500396 GTGTTCGACGAAATGCCCC 59.500 57.895 12.67 0.00 0.00 5.80
1007 1035 0.953960 GTGTTCGACGAAATGCCCCT 60.954 55.000 12.67 0.00 0.00 4.79
1227 1255 2.045536 GGGCTGGACAAGGAGCTG 60.046 66.667 0.00 0.00 35.42 4.24
1246 1274 0.794229 GTTCGTGTGCAATGCGATGG 60.794 55.000 0.00 0.00 34.52 3.51
1332 1360 0.460284 GCGATCTGGTGACGTGGAAT 60.460 55.000 0.00 0.00 0.00 3.01
1391 1419 0.179215 GCTGCGGTCAAGATGTTTCG 60.179 55.000 0.00 0.00 0.00 3.46
1624 1652 1.293924 CACCATGCCAGTTCGAGATC 58.706 55.000 0.00 0.00 0.00 2.75
1700 1728 1.543208 GGCAATCGAGGCATATGGTCA 60.543 52.381 13.11 0.00 0.00 4.02
2058 2086 6.005823 TCCTGATCATGTCACATTTGTTTCT 58.994 36.000 0.00 0.00 32.22 2.52
2146 2174 2.579410 AACATACGGCATTATCCCCC 57.421 50.000 0.00 0.00 0.00 5.40
2265 2293 0.251077 CTGCTGTTTGGGGAGCTCTT 60.251 55.000 14.64 0.00 36.11 2.85
2268 2296 1.818642 CTGTTTGGGGAGCTCTTCTG 58.181 55.000 14.64 0.00 0.00 3.02
2289 2317 1.466856 GTGCTTGCAGGATTCATGGA 58.533 50.000 0.00 0.00 0.00 3.41
2290 2318 1.404391 GTGCTTGCAGGATTCATGGAG 59.596 52.381 0.00 0.00 0.00 3.86
2493 2521 7.009179 AGAGGTGAAAAGATCAGTGAATGTA 57.991 36.000 0.00 0.00 39.19 2.29
2494 2522 7.628234 AGAGGTGAAAAGATCAGTGAATGTAT 58.372 34.615 0.00 0.00 39.19 2.29
2701 2730 4.901250 CCTTTGGCATCATAAATACCCCTT 59.099 41.667 0.00 0.00 0.00 3.95
2838 2867 3.554129 GGTTCCACCACTTTAAACATGGC 60.554 47.826 11.98 0.00 38.42 4.40
2933 2962 9.691362 ATAAAAGGCTTTGTTGTTGTACAATAG 57.309 29.630 14.19 4.41 40.59 1.73
2938 2967 8.512138 AGGCTTTGTTGTTGTACAATAGAATAC 58.488 33.333 12.26 4.86 40.59 1.89
2953 2982 8.359642 ACAATAGAATACTTTTTGTGTGCACAT 58.640 29.630 24.69 7.51 41.52 3.21
2976 3005 5.065914 TCATGTTTTCTCAAGCTAAGCACT 58.934 37.500 0.00 0.00 0.00 4.40
2984 3013 6.042638 TCTCAAGCTAAGCACTTAGTGATT 57.957 37.500 19.68 19.68 44.45 2.57
3159 3196 4.039004 TGTTGCTTACAGGCATTGAATTGT 59.961 37.500 0.00 0.00 42.09 2.71
3259 3296 9.502091 TGACTGCTTGGTTGGTAATATTATATC 57.498 33.333 0.00 0.00 0.00 1.63
3305 3342 7.313740 ACATTATCATCATCCTACTTCTGCT 57.686 36.000 0.00 0.00 0.00 4.24
3306 3343 7.743749 ACATTATCATCATCCTACTTCTGCTT 58.256 34.615 0.00 0.00 0.00 3.91
3308 3345 5.883685 ATCATCATCCTACTTCTGCTTCA 57.116 39.130 0.00 0.00 0.00 3.02
3309 3346 5.883685 TCATCATCCTACTTCTGCTTCAT 57.116 39.130 0.00 0.00 0.00 2.57
3310 3347 5.851720 TCATCATCCTACTTCTGCTTCATC 58.148 41.667 0.00 0.00 0.00 2.92
3312 3349 4.293494 TCATCCTACTTCTGCTTCATCCT 58.707 43.478 0.00 0.00 0.00 3.24
3314 3351 2.169352 TCCTACTTCTGCTTCATCCTGC 59.831 50.000 0.00 0.00 0.00 4.85
3315 3352 2.559440 CTACTTCTGCTTCATCCTGCC 58.441 52.381 0.00 0.00 0.00 4.85
3318 3355 2.573462 ACTTCTGCTTCATCCTGCCTAA 59.427 45.455 0.00 0.00 0.00 2.69
3319 3356 3.201708 ACTTCTGCTTCATCCTGCCTAAT 59.798 43.478 0.00 0.00 0.00 1.73
3320 3357 3.939740 TCTGCTTCATCCTGCCTAATT 57.060 42.857 0.00 0.00 0.00 1.40
3321 3358 3.548770 TCTGCTTCATCCTGCCTAATTG 58.451 45.455 0.00 0.00 0.00 2.32
3322 3359 3.200605 TCTGCTTCATCCTGCCTAATTGA 59.799 43.478 0.00 0.00 0.00 2.57
3323 3360 4.141321 TCTGCTTCATCCTGCCTAATTGAT 60.141 41.667 0.00 0.00 0.00 2.57
3324 3361 4.139786 TGCTTCATCCTGCCTAATTGATC 58.860 43.478 0.00 0.00 0.00 2.92
3325 3362 4.139786 GCTTCATCCTGCCTAATTGATCA 58.860 43.478 0.00 0.00 0.00 2.92
3326 3363 4.581824 GCTTCATCCTGCCTAATTGATCAA 59.418 41.667 11.26 11.26 0.00 2.57
3327 3364 5.506982 GCTTCATCCTGCCTAATTGATCAAC 60.507 44.000 11.07 0.00 0.00 3.18
3331 4646 1.334869 CTGCCTAATTGATCAACCGCC 59.665 52.381 11.07 0.00 0.00 6.13
3332 4647 0.307760 GCCTAATTGATCAACCGCCG 59.692 55.000 11.07 0.00 0.00 6.46
3356 4672 1.359475 GTGGACGAGTCGGCTATCC 59.641 63.158 19.69 15.19 34.07 2.59
3357 4673 1.826921 TGGACGAGTCGGCTATCCC 60.827 63.158 19.69 8.60 34.07 3.85
3470 4786 4.005650 AGTAGCATCAACAAGGTCACATG 58.994 43.478 0.00 0.00 0.00 3.21
3471 4787 1.542915 AGCATCAACAAGGTCACATGC 59.457 47.619 0.00 0.00 37.50 4.06
3472 4788 1.542915 GCATCAACAAGGTCACATGCT 59.457 47.619 0.00 0.00 34.94 3.79
3473 4789 2.415090 GCATCAACAAGGTCACATGCTC 60.415 50.000 0.00 0.00 34.94 4.26
3474 4790 2.636647 TCAACAAGGTCACATGCTCA 57.363 45.000 0.00 0.00 0.00 4.26
3475 4791 2.221169 TCAACAAGGTCACATGCTCAC 58.779 47.619 0.00 0.00 0.00 3.51
3476 4792 1.948834 CAACAAGGTCACATGCTCACA 59.051 47.619 0.00 0.00 0.00 3.58
3477 4793 2.555325 CAACAAGGTCACATGCTCACAT 59.445 45.455 0.00 0.00 36.79 3.21
3521 4837 0.749454 GCGGATGCCACCTTTCATCT 60.749 55.000 0.00 0.00 39.14 2.90
3529 4845 3.245229 TGCCACCTTTCATCTTGGTATGT 60.245 43.478 0.00 0.00 32.13 2.29
3746 5075 7.809238 TCCATCACAGATAAAGGAATCATCTT 58.191 34.615 0.00 0.00 0.00 2.40
3747 5076 8.937835 TCCATCACAGATAAAGGAATCATCTTA 58.062 33.333 0.00 0.00 0.00 2.10
3748 5077 9.736414 CCATCACAGATAAAGGAATCATCTTAT 57.264 33.333 0.00 0.00 0.00 1.73
3762 5091 8.477709 GGAATCATCTTATGTTACGAACTTACG 58.522 37.037 0.00 0.00 39.31 3.18
3775 5104 9.956797 GTTACGAACTTACGATTTAAAGCATTA 57.043 29.630 4.10 0.00 37.03 1.90
3853 5182 2.402305 GCAGATGCATCGAAGGAGTAG 58.598 52.381 20.67 5.21 41.59 2.57
3863 5192 6.887002 TGCATCGAAGGAGTAGATATACTGAT 59.113 38.462 4.38 0.00 0.00 2.90
3864 5193 7.394641 TGCATCGAAGGAGTAGATATACTGATT 59.605 37.037 4.38 0.00 0.00 2.57
3865 5194 7.700234 GCATCGAAGGAGTAGATATACTGATTG 59.300 40.741 4.38 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.549516 GCGCCTCCGTCGGTACTC 62.550 72.222 11.88 0.00 36.67 2.59
44 45 2.874648 TAAGAGCGCCTCCGTCGGTA 62.875 60.000 11.88 0.00 37.81 4.02
46 47 2.846652 ATAAGAGCGCCTCCGTCGG 61.847 63.158 2.29 4.39 36.67 4.79
47 48 1.658717 CATAAGAGCGCCTCCGTCG 60.659 63.158 2.29 0.00 36.67 5.12
48 49 1.951631 GCATAAGAGCGCCTCCGTC 60.952 63.158 2.29 0.00 36.67 4.79
49 50 2.107141 GCATAAGAGCGCCTCCGT 59.893 61.111 2.29 0.00 36.67 4.69
51 52 0.744414 TGTTGCATAAGAGCGCCTCC 60.744 55.000 2.29 0.00 37.31 4.30
52 53 0.375106 GTGTTGCATAAGAGCGCCTC 59.625 55.000 2.29 0.45 37.31 4.70
53 54 1.026718 GGTGTTGCATAAGAGCGCCT 61.027 55.000 2.29 0.00 37.31 5.52
113 141 2.105930 GCTGCCGGTGTTGCAAAA 59.894 55.556 0.00 0.00 38.46 2.44
172 200 1.383523 GGGAACAGCCAATGACTAGC 58.616 55.000 0.00 0.00 38.95 3.42
422 450 0.172803 ACGCGAAATAAGCCTCGTCT 59.827 50.000 15.93 0.00 37.39 4.18
480 508 9.241317 CGTCCGTAAGTTATAATACAAATCACT 57.759 33.333 0.00 0.00 0.00 3.41
481 509 9.236691 TCGTCCGTAAGTTATAATACAAATCAC 57.763 33.333 0.00 0.00 0.00 3.06
482 510 9.970395 ATCGTCCGTAAGTTATAATACAAATCA 57.030 29.630 0.00 0.00 0.00 2.57
484 512 9.970395 TGATCGTCCGTAAGTTATAATACAAAT 57.030 29.630 0.00 0.00 0.00 2.32
485 513 9.800433 TTGATCGTCCGTAAGTTATAATACAAA 57.200 29.630 0.00 0.00 0.00 2.83
486 514 9.454585 CTTGATCGTCCGTAAGTTATAATACAA 57.545 33.333 0.00 0.00 0.00 2.41
487 515 8.623903 ACTTGATCGTCCGTAAGTTATAATACA 58.376 33.333 0.00 0.00 29.65 2.29
488 516 9.455847 AACTTGATCGTCCGTAAGTTATAATAC 57.544 33.333 13.39 0.00 40.45 1.89
491 519 9.853555 TTTAACTTGATCGTCCGTAAGTTATAA 57.146 29.630 17.80 14.22 42.08 0.98
492 520 9.853555 TTTTAACTTGATCGTCCGTAAGTTATA 57.146 29.630 17.80 13.82 42.08 0.98
493 521 8.650714 GTTTTAACTTGATCGTCCGTAAGTTAT 58.349 33.333 17.80 6.02 42.08 1.89
494 522 7.148983 CGTTTTAACTTGATCGTCCGTAAGTTA 60.149 37.037 15.42 15.42 41.84 2.24
495 523 6.346040 CGTTTTAACTTGATCGTCCGTAAGTT 60.346 38.462 16.68 16.68 43.48 2.66
496 524 5.117592 CGTTTTAACTTGATCGTCCGTAAGT 59.882 40.000 0.00 0.00 35.06 2.24
497 525 5.117592 ACGTTTTAACTTGATCGTCCGTAAG 59.882 40.000 0.00 0.00 0.00 2.34
498 526 4.981674 ACGTTTTAACTTGATCGTCCGTAA 59.018 37.500 0.00 0.00 0.00 3.18
499 527 4.545610 ACGTTTTAACTTGATCGTCCGTA 58.454 39.130 0.00 0.00 0.00 4.02
500 528 3.383761 ACGTTTTAACTTGATCGTCCGT 58.616 40.909 0.00 0.00 0.00 4.69
501 529 5.499268 TTACGTTTTAACTTGATCGTCCG 57.501 39.130 0.00 0.00 33.70 4.79
502 530 8.063630 TCTTTTTACGTTTTAACTTGATCGTCC 58.936 33.333 0.00 0.00 33.70 4.79
503 531 8.976715 TCTTTTTACGTTTTAACTTGATCGTC 57.023 30.769 0.00 0.00 33.70 4.20
504 532 9.377383 CATCTTTTTACGTTTTAACTTGATCGT 57.623 29.630 0.00 0.00 35.73 3.73
505 533 9.377383 ACATCTTTTTACGTTTTAACTTGATCG 57.623 29.630 0.00 0.00 0.00 3.69
508 536 8.800031 GCAACATCTTTTTACGTTTTAACTTGA 58.200 29.630 0.00 0.00 0.00 3.02
509 537 8.803799 AGCAACATCTTTTTACGTTTTAACTTG 58.196 29.630 0.00 0.00 0.00 3.16
510 538 8.920509 AGCAACATCTTTTTACGTTTTAACTT 57.079 26.923 0.00 0.00 0.00 2.66
514 542 8.960075 GCTTTAGCAACATCTTTTTACGTTTTA 58.040 29.630 0.00 0.00 41.59 1.52
515 543 7.042992 GGCTTTAGCAACATCTTTTTACGTTTT 60.043 33.333 0.00 0.00 44.36 2.43
516 544 6.419710 GGCTTTAGCAACATCTTTTTACGTTT 59.580 34.615 0.00 0.00 44.36 3.60
517 545 5.918576 GGCTTTAGCAACATCTTTTTACGTT 59.081 36.000 0.00 0.00 44.36 3.99
518 546 5.009210 TGGCTTTAGCAACATCTTTTTACGT 59.991 36.000 3.88 0.00 44.36 3.57
519 547 5.342259 GTGGCTTTAGCAACATCTTTTTACG 59.658 40.000 4.38 0.00 44.29 3.18
520 548 6.690704 GTGGCTTTAGCAACATCTTTTTAC 57.309 37.500 4.38 0.00 44.29 2.01
530 558 6.539649 TCGATATAATGTGGCTTTAGCAAC 57.460 37.500 2.20 2.20 45.10 4.17
531 559 7.255104 CCTTTCGATATAATGTGGCTTTAGCAA 60.255 37.037 3.88 0.00 44.36 3.91
532 560 6.204688 CCTTTCGATATAATGTGGCTTTAGCA 59.795 38.462 3.88 0.00 44.36 3.49
533 561 6.603095 CCTTTCGATATAATGTGGCTTTAGC 58.397 40.000 0.00 0.00 41.14 3.09
534 562 6.428159 AGCCTTTCGATATAATGTGGCTTTAG 59.572 38.462 0.00 0.00 46.04 1.85
535 563 6.204688 CAGCCTTTCGATATAATGTGGCTTTA 59.795 38.462 0.00 0.00 46.04 1.85
536 564 5.009010 CAGCCTTTCGATATAATGTGGCTTT 59.991 40.000 0.00 0.00 46.04 3.51
537 565 4.516698 CAGCCTTTCGATATAATGTGGCTT 59.483 41.667 0.00 0.00 46.04 4.35
538 566 4.357918 AGCCTTTCGATATAATGTGGCT 57.642 40.909 0.00 0.00 43.81 4.75
539 567 3.815401 ACAGCCTTTCGATATAATGTGGC 59.185 43.478 0.00 0.00 39.40 5.01
540 568 5.348418 CACAGCCTTTCGATATAATGTGG 57.652 43.478 10.89 0.00 34.58 4.17
541 569 4.319766 GCCACAGCCTTTCGATATAATGTG 60.320 45.833 11.50 11.50 37.21 3.21
542 570 3.815401 GCCACAGCCTTTCGATATAATGT 59.185 43.478 0.00 0.00 0.00 2.71
543 571 4.410492 GCCACAGCCTTTCGATATAATG 57.590 45.455 0.00 0.00 0.00 1.90
557 585 0.312102 GTCTTGAACAAGGCCACAGC 59.688 55.000 5.01 0.00 37.07 4.40
558 586 1.679139 TGTCTTGAACAAGGCCACAG 58.321 50.000 15.04 0.00 42.09 3.66
559 587 2.229792 GATGTCTTGAACAAGGCCACA 58.770 47.619 15.04 11.76 42.09 4.17
560 588 2.229792 TGATGTCTTGAACAAGGCCAC 58.770 47.619 15.04 10.03 42.09 5.01
561 589 2.655090 TGATGTCTTGAACAAGGCCA 57.345 45.000 15.04 11.72 42.09 5.36
562 590 3.149196 TCTTGATGTCTTGAACAAGGCC 58.851 45.455 15.04 0.00 42.09 5.19
563 591 4.456911 TCATCTTGATGTCTTGAACAAGGC 59.543 41.667 11.55 11.55 42.37 4.35
564 592 6.564709 TTCATCTTGATGTCTTGAACAAGG 57.435 37.500 13.46 0.00 42.37 3.61
565 593 6.072618 AGCTTCATCTTGATGTCTTGAACAAG 60.073 38.462 10.01 8.09 42.37 3.16
566 594 5.766670 AGCTTCATCTTGATGTCTTGAACAA 59.233 36.000 10.01 0.00 42.37 2.83
567 595 5.311265 AGCTTCATCTTGATGTCTTGAACA 58.689 37.500 10.01 0.00 43.51 3.18
568 596 5.876612 AGCTTCATCTTGATGTCTTGAAC 57.123 39.130 10.01 0.00 0.00 3.18
569 597 5.583854 GCTAGCTTCATCTTGATGTCTTGAA 59.416 40.000 7.70 0.00 0.00 2.69
570 598 5.114780 GCTAGCTTCATCTTGATGTCTTGA 58.885 41.667 7.70 0.00 0.00 3.02
571 599 4.874396 TGCTAGCTTCATCTTGATGTCTTG 59.126 41.667 17.23 8.18 0.00 3.02
572 600 5.095145 TGCTAGCTTCATCTTGATGTCTT 57.905 39.130 17.23 0.00 0.00 3.01
573 601 4.750021 TGCTAGCTTCATCTTGATGTCT 57.250 40.909 17.23 8.51 0.00 3.41
574 602 5.808042 TTTGCTAGCTTCATCTTGATGTC 57.192 39.130 17.23 2.53 0.00 3.06
575 603 6.770746 ATTTTGCTAGCTTCATCTTGATGT 57.229 33.333 17.23 0.00 0.00 3.06
576 604 8.618677 TCTTATTTTGCTAGCTTCATCTTGATG 58.381 33.333 17.23 4.35 0.00 3.07
577 605 8.619546 GTCTTATTTTGCTAGCTTCATCTTGAT 58.380 33.333 17.23 0.37 0.00 2.57
578 606 7.607607 TGTCTTATTTTGCTAGCTTCATCTTGA 59.392 33.333 17.23 3.07 0.00 3.02
579 607 7.755591 TGTCTTATTTTGCTAGCTTCATCTTG 58.244 34.615 17.23 0.67 0.00 3.02
580 608 7.928307 TGTCTTATTTTGCTAGCTTCATCTT 57.072 32.000 17.23 0.00 0.00 2.40
581 609 7.066766 CCTTGTCTTATTTTGCTAGCTTCATCT 59.933 37.037 17.23 0.00 0.00 2.90
582 610 7.066284 TCCTTGTCTTATTTTGCTAGCTTCATC 59.934 37.037 17.23 0.00 0.00 2.92
583 611 6.886459 TCCTTGTCTTATTTTGCTAGCTTCAT 59.114 34.615 17.23 7.26 0.00 2.57
584 612 6.237901 TCCTTGTCTTATTTTGCTAGCTTCA 58.762 36.000 17.23 0.00 0.00 3.02
585 613 6.743575 TCCTTGTCTTATTTTGCTAGCTTC 57.256 37.500 17.23 0.00 0.00 3.86
586 614 6.490040 TGTTCCTTGTCTTATTTTGCTAGCTT 59.510 34.615 17.23 0.85 0.00 3.74
587 615 6.003950 TGTTCCTTGTCTTATTTTGCTAGCT 58.996 36.000 17.23 0.00 0.00 3.32
588 616 6.086871 GTGTTCCTTGTCTTATTTTGCTAGC 58.913 40.000 8.10 8.10 0.00 3.42
589 617 6.206634 TGGTGTTCCTTGTCTTATTTTGCTAG 59.793 38.462 0.00 0.00 34.23 3.42
590 618 6.065374 TGGTGTTCCTTGTCTTATTTTGCTA 58.935 36.000 0.00 0.00 34.23 3.49
591 619 4.892934 TGGTGTTCCTTGTCTTATTTTGCT 59.107 37.500 0.00 0.00 34.23 3.91
592 620 5.195001 TGGTGTTCCTTGTCTTATTTTGC 57.805 39.130 0.00 0.00 34.23 3.68
593 621 5.983118 GGTTGGTGTTCCTTGTCTTATTTTG 59.017 40.000 0.00 0.00 34.23 2.44
594 622 5.659079 TGGTTGGTGTTCCTTGTCTTATTTT 59.341 36.000 0.00 0.00 34.23 1.82
595 623 5.205056 TGGTTGGTGTTCCTTGTCTTATTT 58.795 37.500 0.00 0.00 34.23 1.40
596 624 4.798882 TGGTTGGTGTTCCTTGTCTTATT 58.201 39.130 0.00 0.00 34.23 1.40
597 625 4.447138 TGGTTGGTGTTCCTTGTCTTAT 57.553 40.909 0.00 0.00 34.23 1.73
598 626 3.935818 TGGTTGGTGTTCCTTGTCTTA 57.064 42.857 0.00 0.00 34.23 2.10
599 627 2.818751 TGGTTGGTGTTCCTTGTCTT 57.181 45.000 0.00 0.00 34.23 3.01
600 628 2.818751 TTGGTTGGTGTTCCTTGTCT 57.181 45.000 0.00 0.00 34.23 3.41
601 629 2.545742 GCATTGGTTGGTGTTCCTTGTC 60.546 50.000 0.00 0.00 34.23 3.18
602 630 1.412343 GCATTGGTTGGTGTTCCTTGT 59.588 47.619 0.00 0.00 34.23 3.16
603 631 1.270252 GGCATTGGTTGGTGTTCCTTG 60.270 52.381 0.00 0.00 34.23 3.61
604 632 1.047801 GGCATTGGTTGGTGTTCCTT 58.952 50.000 0.00 0.00 34.23 3.36
605 633 0.105760 TGGCATTGGTTGGTGTTCCT 60.106 50.000 0.00 0.00 34.23 3.36
606 634 0.318120 CTGGCATTGGTTGGTGTTCC 59.682 55.000 0.00 0.00 0.00 3.62
607 635 0.319813 GCTGGCATTGGTTGGTGTTC 60.320 55.000 0.00 0.00 0.00 3.18
608 636 1.747774 GCTGGCATTGGTTGGTGTT 59.252 52.632 0.00 0.00 0.00 3.32
609 637 2.563798 CGCTGGCATTGGTTGGTGT 61.564 57.895 0.00 0.00 0.00 4.16
610 638 2.259204 CGCTGGCATTGGTTGGTG 59.741 61.111 0.00 0.00 0.00 4.17
611 639 2.990967 CCGCTGGCATTGGTTGGT 60.991 61.111 0.00 0.00 0.00 3.67
982 1010 0.599204 ATTTCGTCGAACACCGTGCT 60.599 50.000 7.29 0.00 39.75 4.40
985 1013 1.562575 GGCATTTCGTCGAACACCGT 61.563 55.000 7.29 0.00 39.75 4.83
986 1014 1.131826 GGCATTTCGTCGAACACCG 59.868 57.895 7.29 0.00 40.25 4.94
1120 1148 3.112709 GCTTGAGACCGTCACCGC 61.113 66.667 0.40 0.00 33.71 5.68
1134 1162 3.367743 CACATGGGCAGCACGCTT 61.368 61.111 0.00 0.00 41.91 4.68
1227 1255 0.794229 CCATCGCATTGCACACGAAC 60.794 55.000 9.69 0.00 39.56 3.95
1246 1274 3.063997 CCAAGCTTTCCATACACATCGAC 59.936 47.826 0.00 0.00 0.00 4.20
1391 1419 0.541863 CCCACTGTCCCTCATACCAC 59.458 60.000 0.00 0.00 0.00 4.16
1624 1652 5.939883 TGATCAAAGTATTCCAAGACACAGG 59.060 40.000 0.00 0.00 0.00 4.00
1888 1916 3.005684 TCAAAGAAAAGCATTGCATCCGT 59.994 39.130 11.91 0.00 0.00 4.69
2058 2086 0.321671 GACTACAGGCAGCCAACAGA 59.678 55.000 15.80 0.00 0.00 3.41
2265 2293 0.322816 GAATCCTGCAAGCACCCAGA 60.323 55.000 0.00 0.00 0.00 3.86
2268 2296 0.458669 CATGAATCCTGCAAGCACCC 59.541 55.000 0.00 0.00 0.00 4.61
2289 2317 3.007182 CCACTTTGCCCATTTCAACATCT 59.993 43.478 0.00 0.00 0.00 2.90
2290 2318 3.328505 CCACTTTGCCCATTTCAACATC 58.671 45.455 0.00 0.00 0.00 3.06
2493 2521 3.561143 TGTCTGGTTGCCACTGTAAAAT 58.439 40.909 0.00 0.00 0.00 1.82
2494 2522 2.948979 CTGTCTGGTTGCCACTGTAAAA 59.051 45.455 0.00 0.00 0.00 1.52
2697 2726 0.391793 GGAGCGGAGTTCTTGAAGGG 60.392 60.000 0.00 0.00 38.04 3.95
2701 2730 5.773176 TGTATATATGGAGCGGAGTTCTTGA 59.227 40.000 0.00 0.00 38.04 3.02
2799 2828 0.909623 ACCGATTTGAATCCCGGACT 59.090 50.000 0.73 0.00 44.29 3.85
2838 2867 4.622260 AAAATCCCCACAAGAACAATGG 57.378 40.909 0.00 0.00 0.00 3.16
2881 2910 6.754193 CCAAGCAAAATTGGGTAGACTAAAA 58.246 36.000 0.00 0.00 45.07 1.52
2896 2925 4.972751 AAGCCTTTTATCCCAAGCAAAA 57.027 36.364 0.00 0.00 0.00 2.44
2897 2926 4.102367 ACAAAGCCTTTTATCCCAAGCAAA 59.898 37.500 0.00 0.00 0.00 3.68
2908 2937 8.904834 TCTATTGTACAACAACAAAGCCTTTTA 58.095 29.630 11.22 0.00 41.40 1.52
2933 2962 6.642131 ACATGATGTGCACACAAAAAGTATTC 59.358 34.615 24.37 12.13 45.41 1.75
2938 2967 5.721876 AAACATGATGTGCACACAAAAAG 57.278 34.783 24.37 12.55 45.41 2.27
2946 2975 3.671928 GCTTGAGAAAACATGATGTGCAC 59.328 43.478 10.75 10.75 0.00 4.57
2953 2982 5.065914 AGTGCTTAGCTTGAGAAAACATGA 58.934 37.500 5.60 0.00 0.00 3.07
3000 3029 9.606631 ATTCCTAAATCTCTTGAGTACATGAAC 57.393 33.333 0.00 0.00 31.51 3.18
3072 3109 2.871453 TGGGAGGAGTTTTGCTTAACC 58.129 47.619 0.00 0.00 0.00 2.85
3120 3157 4.831107 AGCAACAACAAACATGTTTTCCT 58.169 34.783 21.10 5.96 38.90 3.36
3178 3215 9.415008 ACTATAGAAGAGTCTAAAGCTGATCAA 57.585 33.333 6.78 0.00 39.81 2.57
3198 3235 1.638529 CCAGGAGGCCAGGACTATAG 58.361 60.000 5.01 0.00 31.24 1.31
3256 3293 9.415008 GTATCATAAGAGAATAGGCAGGAGATA 57.585 37.037 0.00 0.00 0.00 1.98
3259 3296 7.473735 TGTATCATAAGAGAATAGGCAGGAG 57.526 40.000 0.00 0.00 0.00 3.69
3291 3328 4.378774 CAGGATGAAGCAGAAGTAGGATG 58.621 47.826 0.00 0.00 39.69 3.51
3292 3329 3.181456 GCAGGATGAAGCAGAAGTAGGAT 60.181 47.826 0.00 0.00 39.69 3.24
3293 3330 2.169352 GCAGGATGAAGCAGAAGTAGGA 59.831 50.000 0.00 0.00 39.69 2.94
3294 3331 2.559440 GCAGGATGAAGCAGAAGTAGG 58.441 52.381 0.00 0.00 39.69 3.18
3296 3333 2.191400 AGGCAGGATGAAGCAGAAGTA 58.809 47.619 0.00 0.00 39.69 2.24
3300 3337 3.200605 TCAATTAGGCAGGATGAAGCAGA 59.799 43.478 0.00 0.00 39.69 4.26
3302 3339 3.650281 TCAATTAGGCAGGATGAAGCA 57.350 42.857 0.00 0.00 39.69 3.91
3303 3340 4.139786 TGATCAATTAGGCAGGATGAAGC 58.860 43.478 0.00 0.00 39.69 3.86
3305 3342 4.889409 GGTTGATCAATTAGGCAGGATGAA 59.111 41.667 12.12 0.00 39.69 2.57
3306 3343 4.464008 GGTTGATCAATTAGGCAGGATGA 58.536 43.478 12.12 0.00 39.69 2.92
3308 3345 3.480470 CGGTTGATCAATTAGGCAGGAT 58.520 45.455 12.12 0.00 0.00 3.24
3309 3346 2.917933 CGGTTGATCAATTAGGCAGGA 58.082 47.619 12.12 0.00 0.00 3.86
3310 3347 1.334869 GCGGTTGATCAATTAGGCAGG 59.665 52.381 12.12 0.00 0.00 4.85
3312 3349 1.388547 GGCGGTTGATCAATTAGGCA 58.611 50.000 12.12 0.00 0.00 4.75
3314 3351 0.944386 CCGGCGGTTGATCAATTAGG 59.056 55.000 19.97 7.58 0.00 2.69
3315 3352 1.663695 ACCGGCGGTTGATCAATTAG 58.336 50.000 28.83 7.35 27.29 1.73
3318 3355 0.539986 AGTACCGGCGGTTGATCAAT 59.460 50.000 38.73 15.69 37.09 2.57
3319 3356 0.390603 CAGTACCGGCGGTTGATCAA 60.391 55.000 38.73 15.86 37.09 2.57
3320 3357 1.216977 CAGTACCGGCGGTTGATCA 59.783 57.895 38.73 16.74 37.09 2.92
3321 3358 1.082117 CACAGTACCGGCGGTTGATC 61.082 60.000 38.73 23.18 37.09 2.92
3322 3359 1.079405 CACAGTACCGGCGGTTGAT 60.079 57.895 38.73 20.35 37.09 2.57
3323 3360 2.340809 CACAGTACCGGCGGTTGA 59.659 61.111 38.73 18.52 37.09 3.18
3324 3361 2.740826 CCACAGTACCGGCGGTTG 60.741 66.667 38.73 30.94 37.09 3.77
3325 3362 2.918802 TCCACAGTACCGGCGGTT 60.919 61.111 38.73 18.52 37.09 4.44
3326 3363 3.688159 GTCCACAGTACCGGCGGT 61.688 66.667 35.91 35.91 40.16 5.68
3327 3364 4.789075 CGTCCACAGTACCGGCGG 62.789 72.222 27.06 27.06 0.00 6.13
3331 4646 1.134075 CGACTCGTCCACAGTACCG 59.866 63.158 0.00 0.00 0.00 4.02
3332 4647 1.505353 CCGACTCGTCCACAGTACC 59.495 63.158 0.00 0.00 0.00 3.34
3356 4672 0.681733 ACACCTGCAGAGTACAGTGG 59.318 55.000 17.39 0.00 33.09 4.00
3357 4673 1.069204 ACACACCTGCAGAGTACAGTG 59.931 52.381 17.39 15.64 33.09 3.66
3418 4734 2.659063 GGGGCCAAATTCCAGGTGC 61.659 63.158 4.39 0.00 0.00 5.01
3471 4787 5.047731 TCTGAAATATCGAGGGCTATGTGAG 60.048 44.000 0.00 0.00 0.00 3.51
3472 4788 4.832823 TCTGAAATATCGAGGGCTATGTGA 59.167 41.667 0.00 0.00 0.00 3.58
3473 4789 5.139435 TCTGAAATATCGAGGGCTATGTG 57.861 43.478 0.00 0.00 0.00 3.21
3474 4790 5.279708 CCTTCTGAAATATCGAGGGCTATGT 60.280 44.000 0.00 0.00 0.00 2.29
3475 4791 5.174395 CCTTCTGAAATATCGAGGGCTATG 58.826 45.833 0.00 0.00 0.00 2.23
3476 4792 4.841246 ACCTTCTGAAATATCGAGGGCTAT 59.159 41.667 0.00 0.00 32.53 2.97
3477 4793 4.223953 ACCTTCTGAAATATCGAGGGCTA 58.776 43.478 0.00 0.00 32.53 3.93
3613 4942 8.473358 TTCTATCAATTAGAACGTAGATCCCA 57.527 34.615 0.00 0.00 41.10 4.37
3722 5051 9.736414 ATAAGATGATTCCTTTATCTGTGATGG 57.264 33.333 0.00 0.00 31.89 3.51
3746 5075 9.138062 TGCTTTAAATCGTAAGTTCGTAACATA 57.862 29.630 0.00 0.00 39.48 2.29
3747 5076 8.020861 TGCTTTAAATCGTAAGTTCGTAACAT 57.979 30.769 0.00 0.00 39.48 2.71
3748 5077 7.405469 TGCTTTAAATCGTAAGTTCGTAACA 57.595 32.000 0.00 0.00 39.48 2.41
3749 5078 8.870242 AATGCTTTAAATCGTAAGTTCGTAAC 57.130 30.769 0.00 0.00 39.48 2.50
3806 5135 3.859386 GTGGGCTAGCGATTTTGAAAATG 59.141 43.478 8.03 2.30 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.