Multiple sequence alignment - TraesCS7D01G486300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G486300 chr7D 100.000 4838 0 0 1 4838 596698709 596703546 0.000000e+00 8935.0
1 TraesCS7D01G486300 chr7B 89.798 2470 165 29 1549 3981 675211908 675214327 0.000000e+00 3085.0
2 TraesCS7D01G486300 chr7B 88.701 1593 108 19 1451 2992 675188225 675189796 0.000000e+00 1879.0
3 TraesCS7D01G486300 chr7B 89.425 1182 73 20 225 1387 675210711 675211859 0.000000e+00 1443.0
4 TraesCS7D01G486300 chr7B 90.537 1099 73 5 2335 3402 675308868 675309966 0.000000e+00 1424.0
5 TraesCS7D01G486300 chr7B 86.621 1166 94 19 3072 4218 675189820 675190942 0.000000e+00 1232.0
6 TraesCS7D01G486300 chr7B 89.493 809 66 12 3490 4293 675310122 675310916 0.000000e+00 1005.0
7 TraesCS7D01G486300 chr7B 87.255 612 67 9 1 605 675209313 675209920 0.000000e+00 688.0
8 TraesCS7D01G486300 chr7B 83.871 651 47 29 722 1345 675187465 675188084 7.030000e-158 568.0
9 TraesCS7D01G486300 chr7B 85.400 500 54 13 4230 4723 675190921 675191407 7.230000e-138 501.0
10 TraesCS7D01G486300 chr7B 94.276 297 16 1 1977 2273 675307710 675308005 2.050000e-123 453.0
11 TraesCS7D01G486300 chr7B 88.323 334 27 10 4238 4562 675214504 675214834 1.630000e-104 390.0
12 TraesCS7D01G486300 chr7B 90.000 70 6 1 4597 4665 675349029 675349098 6.670000e-14 89.8
13 TraesCS7D01G486300 chr7B 93.617 47 2 1 1389 1434 675188179 675188225 8.690000e-08 69.4
14 TraesCS7D01G486300 chr7A 93.110 2032 111 15 1389 3402 689913120 689915140 0.000000e+00 2950.0
15 TraesCS7D01G486300 chr7A 90.061 986 58 18 423 1388 689912088 689913053 0.000000e+00 1242.0
16 TraesCS7D01G486300 chr7A 92.186 819 42 8 4036 4835 689916083 689916898 0.000000e+00 1138.0
17 TraesCS7D01G486300 chr7A 92.029 552 37 5 3490 4040 689915304 689915849 0.000000e+00 769.0
18 TraesCS7D01G486300 chr7A 83.550 693 79 17 2286 2971 608992692 608992028 2.470000e-172 616.0
19 TraesCS7D01G486300 chr7A 86.279 481 52 11 3979 4450 689930014 689930489 1.200000e-140 510.0
20 TraesCS7D01G486300 chr7A 96.596 235 8 0 1 235 689911851 689912085 1.630000e-104 390.0
21 TraesCS7D01G486300 chr7A 82.400 250 23 9 4607 4835 689930834 689931083 1.060000e-46 198.0
22 TraesCS7D01G486300 chr4A 83.738 701 93 11 2285 2971 636642113 636642806 1.140000e-180 643.0
23 TraesCS7D01G486300 chr5B 83.776 678 91 8 2302 2971 676113630 676112964 4.110000e-175 625.0
24 TraesCS7D01G486300 chr5B 77.415 828 134 35 3101 3891 544487075 544487886 1.240000e-120 444.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G486300 chr7D 596698709 596703546 4837 False 8935.000000 8935 100.000000 1 4838 1 chr7D.!!$F1 4837
1 TraesCS7D01G486300 chr7B 675209313 675214834 5521 False 1401.500000 3085 88.700250 1 4562 4 chr7B.!!$F3 4561
2 TraesCS7D01G486300 chr7B 675307710 675310916 3206 False 960.666667 1424 91.435333 1977 4293 3 chr7B.!!$F4 2316
3 TraesCS7D01G486300 chr7B 675187465 675191407 3942 False 849.880000 1879 87.642000 722 4723 5 chr7B.!!$F2 4001
4 TraesCS7D01G486300 chr7A 689911851 689916898 5047 False 1297.800000 2950 92.796400 1 4835 5 chr7A.!!$F1 4834
5 TraesCS7D01G486300 chr7A 608992028 608992692 664 True 616.000000 616 83.550000 2286 2971 1 chr7A.!!$R1 685
6 TraesCS7D01G486300 chr7A 689930014 689931083 1069 False 354.000000 510 84.339500 3979 4835 2 chr7A.!!$F2 856
7 TraesCS7D01G486300 chr4A 636642113 636642806 693 False 643.000000 643 83.738000 2285 2971 1 chr4A.!!$F1 686
8 TraesCS7D01G486300 chr5B 676112964 676113630 666 True 625.000000 625 83.776000 2302 2971 1 chr5B.!!$R1 669
9 TraesCS7D01G486300 chr5B 544487075 544487886 811 False 444.000000 444 77.415000 3101 3891 1 chr5B.!!$F1 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.400213 ATGTCGGGCTTTCAGTCCAA 59.600 50.0 0.00 0.0 40.96 3.53 F
1345 2569 0.252513 TCCTTCCTCCCGTCATTCCA 60.253 55.0 0.00 0.0 0.00 3.53 F
2191 3514 0.312102 TCGAGGCGCATCACATAGAG 59.688 55.0 23.09 3.6 0.00 2.43 F
3009 5224 1.151668 GTCGTGCACAAGCTCAGAAT 58.848 50.0 18.64 0.0 42.74 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 2767 0.685097 TTTAACCCGTGAGCTGAGCT 59.315 50.0 6.69 6.69 43.88 4.09 R
3257 5483 0.035056 ATTGCCCGAACTCTCCCTTG 60.035 55.0 0.00 0.00 0.00 3.61 R
3261 5487 0.322546 ACCAATTGCCCGAACTCTCC 60.323 55.0 0.00 0.00 0.00 3.71 R
3896 6242 0.547712 AGCACTAGTGTGGGGTCCAT 60.548 55.0 23.44 0.00 43.97 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.400213 ATGTCGGGCTTTCAGTCCAA 59.600 50.000 0.00 0.00 40.96 3.53
157 158 8.671028 TCTTCAAGACAAAACCTAAACTTGTAC 58.329 33.333 0.00 0.00 36.91 2.90
252 253 2.224597 ACGAACCCAATACGGAAACCTT 60.225 45.455 0.00 0.00 36.56 3.50
262 263 2.952116 ACGGAAACCTTTCAATCCCAA 58.048 42.857 0.40 0.00 38.92 4.12
268 269 4.412060 AACCTTTCAATCCCAACCCATA 57.588 40.909 0.00 0.00 0.00 2.74
294 295 1.735571 CGAACCCGACCCAAACTATTG 59.264 52.381 0.00 0.00 38.22 1.90
529 1709 4.469552 CCGAACTTTCAATACCGTTTTCC 58.530 43.478 0.00 0.00 0.00 3.13
604 1787 1.295792 GAAATGCATTACGAGCCGGA 58.704 50.000 13.39 0.00 0.00 5.14
627 1810 1.808945 GGCCAGAGTGAAACATGAGTG 59.191 52.381 0.00 0.00 41.43 3.51
629 1812 2.497138 CCAGAGTGAAACATGAGTGCA 58.503 47.619 0.00 0.00 41.43 4.57
630 1813 2.880268 CCAGAGTGAAACATGAGTGCAA 59.120 45.455 0.00 0.00 41.43 4.08
686 1874 7.056844 AGAAGGTGTTCCTATTACTAGCATC 57.943 40.000 0.00 0.00 44.35 3.91
759 1955 2.031465 CGTTGGGCGTTGGGTACT 59.969 61.111 0.00 0.00 35.54 2.73
1106 2314 3.605634 GCCCCTCTTTTCTTCTCTCTTC 58.394 50.000 0.00 0.00 0.00 2.87
1117 2329 4.629122 TCTTCTCTCTTCCCATTCCTCAT 58.371 43.478 0.00 0.00 0.00 2.90
1337 2561 2.184579 GTCGCTTCCTTCCTCCCG 59.815 66.667 0.00 0.00 0.00 5.14
1340 2564 2.646175 CGCTTCCTTCCTCCCGTCA 61.646 63.158 0.00 0.00 0.00 4.35
1345 2569 0.252513 TCCTTCCTCCCGTCATTCCA 60.253 55.000 0.00 0.00 0.00 3.53
1347 2571 1.212935 CCTTCCTCCCGTCATTCCAAT 59.787 52.381 0.00 0.00 0.00 3.16
1348 2572 2.292267 CTTCCTCCCGTCATTCCAATG 58.708 52.381 0.00 0.00 37.75 2.82
1349 2573 1.285280 TCCTCCCGTCATTCCAATGT 58.715 50.000 0.00 0.00 37.65 2.71
1350 2574 1.209504 TCCTCCCGTCATTCCAATGTC 59.790 52.381 0.00 0.00 37.65 3.06
1360 2584 4.629200 GTCATTCCAATGTCTGTCTGTCTC 59.371 45.833 0.00 0.00 37.65 3.36
1424 2715 7.370383 TCATTCTTGGCAAAGTTCAGATTTAC 58.630 34.615 0.00 0.00 34.78 2.01
1425 2716 5.705609 TCTTGGCAAAGTTCAGATTTACC 57.294 39.130 0.00 0.00 34.78 2.85
1433 2724 6.623767 GCAAAGTTCAGATTTACCAGTCCATC 60.624 42.308 0.00 0.00 0.00 3.51
1435 2726 5.491982 AGTTCAGATTTACCAGTCCATCAC 58.508 41.667 0.00 0.00 0.00 3.06
1475 2767 6.374333 CGTTATTTCCTTTCTCTGGGATTTCA 59.626 38.462 0.00 0.00 0.00 2.69
1476 2768 7.414540 CGTTATTTCCTTTCTCTGGGATTTCAG 60.415 40.741 0.00 0.00 36.17 3.02
1477 2769 3.356529 TCCTTTCTCTGGGATTTCAGC 57.643 47.619 0.00 0.00 34.91 4.26
1478 2770 2.915604 TCCTTTCTCTGGGATTTCAGCT 59.084 45.455 0.00 0.00 34.91 4.24
1479 2771 3.054802 TCCTTTCTCTGGGATTTCAGCTC 60.055 47.826 0.00 0.00 34.91 4.09
1520 2812 9.507329 ACATCTTTAAGTTCAGTTCACATACAT 57.493 29.630 0.00 0.00 0.00 2.29
1632 2925 3.274288 GTCCAATGTGTCCAGATTCCTC 58.726 50.000 0.00 0.00 0.00 3.71
1651 2944 3.584834 CTCAAGCCCCAAAATTTTACCG 58.415 45.455 2.44 0.00 0.00 4.02
1683 2979 9.892130 ATTGTTTGAACTAGTAGAATCTAAGGG 57.108 33.333 3.59 0.00 0.00 3.95
1750 3073 4.112634 AGTATTCACCTTTTGGCAGGAA 57.887 40.909 0.00 0.00 45.59 3.36
1771 3094 7.667635 CAGGAATACAGAGTAGTGGAGATATCA 59.332 40.741 5.32 0.00 0.00 2.15
1917 3240 4.341806 TCTGCACCATCAAAGTGTTCATTT 59.658 37.500 0.00 0.00 37.56 2.32
1935 3258 7.013750 TGTTCATTTTACAGTAATCCTGCAACA 59.986 33.333 0.00 3.73 45.68 3.33
2008 3331 8.442374 TCTAAATAACCAAGTGTACCTTCCTTT 58.558 33.333 0.00 0.00 0.00 3.11
2009 3332 6.894339 AATAACCAAGTGTACCTTCCTTTG 57.106 37.500 0.00 0.00 0.00 2.77
2075 3398 1.611977 ACTTGATCACCGAGTTCGACA 59.388 47.619 2.59 0.00 43.02 4.35
2191 3514 0.312102 TCGAGGCGCATCACATAGAG 59.688 55.000 23.09 3.60 0.00 2.43
2341 3933 3.005472 TCAGTTAGGACCTTCAAGTCGTG 59.995 47.826 0.00 0.00 37.66 4.35
2365 4496 2.064014 GCTTGCTTTTGGTGATGCTTC 58.936 47.619 0.00 0.00 0.00 3.86
2372 4503 4.637534 GCTTTTGGTGATGCTTCTCTGATA 59.362 41.667 0.88 0.00 0.00 2.15
2379 4510 7.890515 TGGTGATGCTTCTCTGATAGTTATAG 58.109 38.462 0.88 0.00 0.00 1.31
2665 4808 5.301045 CCGACCGATCCATAGGCTATTAATA 59.699 44.000 3.76 0.00 0.00 0.98
2668 4811 7.222224 CGACCGATCCATAGGCTATTAATAAAC 59.778 40.741 3.76 0.00 0.00 2.01
2702 4894 5.186198 GTTCTTGCAGTACATACCCTTGAT 58.814 41.667 0.00 0.00 0.00 2.57
2971 5163 4.022849 GGTTTGACATGGGAAACTCTTCAG 60.023 45.833 16.80 0.00 33.41 3.02
3009 5224 1.151668 GTCGTGCACAAGCTCAGAAT 58.848 50.000 18.64 0.00 42.74 2.40
3201 5424 2.618053 CGGTTTACAAGCTCCTAGGTG 58.382 52.381 9.08 7.68 0.00 4.00
3257 5483 1.269778 GCCAACAGGAAGCAAAAGTCC 60.270 52.381 0.00 0.00 0.00 3.85
3261 5487 2.310538 ACAGGAAGCAAAAGTCCAAGG 58.689 47.619 0.00 0.00 36.28 3.61
3709 6046 3.703001 AAACTTGGTGGATCGACAGAT 57.297 42.857 10.22 0.00 40.38 2.90
3807 6144 2.166459 TCTCACGATGAAGGTCCATGTC 59.834 50.000 0.00 0.00 0.00 3.06
3871 6217 5.016051 TCAAGAATGACCTGATGCTAGAC 57.984 43.478 0.00 0.00 0.00 2.59
3875 6221 4.713814 AGAATGACCTGATGCTAGACAGAA 59.286 41.667 11.67 1.41 36.38 3.02
3891 6237 6.202516 AGACAGAATCTGTAGCTAACTGAC 57.797 41.667 16.71 0.00 45.44 3.51
3893 6239 4.142359 ACAGAATCTGTAGCTAACTGACGG 60.142 45.833 15.09 0.00 43.46 4.79
3896 6242 2.786777 TCTGTAGCTAACTGACGGTGA 58.213 47.619 0.00 0.00 31.71 4.02
3897 6243 3.353557 TCTGTAGCTAACTGACGGTGAT 58.646 45.455 0.00 0.00 31.71 3.06
3898 6244 3.128764 TCTGTAGCTAACTGACGGTGATG 59.871 47.826 0.00 0.00 31.71 3.07
3904 6250 1.838073 AACTGACGGTGATGGACCCC 61.838 60.000 0.00 0.00 42.62 4.95
3911 6257 0.541863 GGTGATGGACCCCACACTAG 59.458 60.000 13.90 0.00 39.10 2.57
3946 6293 2.357009 GCTATTGTTGCTGATCCCTGTG 59.643 50.000 0.00 0.00 0.00 3.66
4115 6703 0.833287 TTCAGCTGGGACTAGGATGC 59.167 55.000 15.13 0.00 0.00 3.91
4119 6707 1.676678 GCTGGGACTAGGATGCGTCA 61.677 60.000 8.47 0.00 31.88 4.35
4218 6813 4.845177 TGCGCAAAAGAGCATTCG 57.155 50.000 8.16 0.00 38.59 3.34
4405 7016 4.412199 TCTCCTTATACCCCACATGGAAAG 59.588 45.833 0.00 0.00 37.39 2.62
4428 7039 3.928375 CAGGTTCCATGTAAAAATGCAGC 59.072 43.478 0.00 0.00 0.00 5.25
4440 7051 7.312154 TGTAAAAATGCAGCAACAGTAATAGG 58.688 34.615 0.00 0.00 0.00 2.57
4443 7054 3.981071 TGCAGCAACAGTAATAGGTCT 57.019 42.857 0.00 0.00 0.00 3.85
4547 7262 1.963338 GCAAAGGCGTCTGAGCAGT 60.963 57.895 8.86 0.00 39.27 4.40
4548 7263 1.905922 GCAAAGGCGTCTGAGCAGTC 61.906 60.000 8.86 0.00 39.27 3.51
4612 7415 7.295672 TCTCCATTGATTGATTAGGGTAGGATT 59.704 37.037 0.00 0.00 0.00 3.01
4658 7461 2.094906 TCGTACCTCGAGAACCAATGTG 60.095 50.000 15.71 0.00 44.01 3.21
4660 7463 0.670546 ACCTCGAGAACCAATGTGCG 60.671 55.000 15.71 0.00 0.00 5.34
4749 7568 3.458163 GGGATGTGAGGCGTCGGA 61.458 66.667 1.39 0.00 33.98 4.55
4806 7639 2.394930 GAAGAGGGAACTTCTCAGCC 57.605 55.000 0.00 0.00 44.43 4.85
4835 7668 1.938861 CGCTGTAACAAAGGTGCGT 59.061 52.632 0.00 0.00 38.81 5.24
4836 7669 0.110823 CGCTGTAACAAAGGTGCGTC 60.111 55.000 0.00 0.00 38.81 5.19
4837 7670 0.237498 GCTGTAACAAAGGTGCGTCC 59.763 55.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.362120 GCATGGGCAGCTTGGACT 60.362 61.111 0.00 0.00 40.72 3.85
157 158 7.479603 CCGATTGAATGTTTATGCGATTATGAG 59.520 37.037 0.00 0.00 0.00 2.90
252 253 2.291930 GGTGGTATGGGTTGGGATTGAA 60.292 50.000 0.00 0.00 0.00 2.69
262 263 2.303282 GGGTTCGGGTGGTATGGGT 61.303 63.158 0.00 0.00 0.00 4.51
388 1566 6.943981 GGCAACTTTTTGTAAAATGAAGGAC 58.056 36.000 9.18 0.00 34.90 3.85
459 1639 4.495184 CGTTTGGCCGGTTCTTTATATGTC 60.495 45.833 1.90 0.00 0.00 3.06
529 1709 4.203950 TGTGAAAAATCCACGAGTTTCG 57.796 40.909 0.00 0.00 46.93 3.46
604 1787 1.421268 TCATGTTTCACTCTGGCCAGT 59.579 47.619 31.58 12.65 0.00 4.00
627 1810 5.238214 TCAAAATATGTTTGGTTTGGCTTGC 59.762 36.000 9.18 0.00 32.91 4.01
629 1812 7.337942 TGTTTCAAAATATGTTTGGTTTGGCTT 59.662 29.630 9.18 0.00 32.91 4.35
630 1813 6.825721 TGTTTCAAAATATGTTTGGTTTGGCT 59.174 30.769 9.18 0.00 32.91 4.75
686 1874 5.241949 CCTACTCTACTGGTGCCTACAATAG 59.758 48.000 0.00 0.00 0.00 1.73
759 1955 6.439058 CCTCTTCAATTATTTACCCACCCAAA 59.561 38.462 0.00 0.00 0.00 3.28
1337 2561 4.573900 AGACAGACAGACATTGGAATGAC 58.426 43.478 6.37 0.30 39.67 3.06
1340 2564 4.776837 AGAGAGACAGACAGACATTGGAAT 59.223 41.667 0.00 0.00 0.00 3.01
1345 2569 5.321102 AGTACAGAGAGACAGACAGACATT 58.679 41.667 0.00 0.00 0.00 2.71
1347 2571 4.041075 AGAGTACAGAGAGACAGACAGACA 59.959 45.833 0.00 0.00 0.00 3.41
1348 2572 4.391830 CAGAGTACAGAGAGACAGACAGAC 59.608 50.000 0.00 0.00 0.00 3.51
1349 2573 4.041075 ACAGAGTACAGAGAGACAGACAGA 59.959 45.833 0.00 0.00 0.00 3.41
1350 2574 4.323417 ACAGAGTACAGAGAGACAGACAG 58.677 47.826 0.00 0.00 0.00 3.51
1360 2584 3.010420 TCCATCACGACAGAGTACAGAG 58.990 50.000 0.00 0.00 0.00 3.35
1424 2715 3.320541 GTCTCCTGATAGTGATGGACTGG 59.679 52.174 0.00 0.00 35.96 4.00
1425 2716 3.004210 CGTCTCCTGATAGTGATGGACTG 59.996 52.174 0.00 0.00 35.96 3.51
1433 2724 1.360551 CGCCCGTCTCCTGATAGTG 59.639 63.158 0.00 0.00 0.00 2.74
1435 2726 1.315690 TAACGCCCGTCTCCTGATAG 58.684 55.000 0.00 0.00 0.00 2.08
1475 2767 0.685097 TTTAACCCGTGAGCTGAGCT 59.315 50.000 6.69 6.69 43.88 4.09
1476 2768 0.796927 GTTTAACCCGTGAGCTGAGC 59.203 55.000 0.00 0.00 0.00 4.26
1477 2769 2.163818 TGTTTAACCCGTGAGCTGAG 57.836 50.000 0.00 0.00 0.00 3.35
1478 2770 2.301870 AGATGTTTAACCCGTGAGCTGA 59.698 45.455 0.00 0.00 0.00 4.26
1479 2771 2.699954 AGATGTTTAACCCGTGAGCTG 58.300 47.619 0.00 0.00 0.00 4.24
1546 2838 4.026356 GGCTCCATATTTGCCATCTACT 57.974 45.455 0.00 0.00 45.46 2.57
1632 2925 2.300437 TCCGGTAAAATTTTGGGGCTTG 59.700 45.455 13.76 0.00 0.00 4.01
1683 2979 2.154462 CATGTCCCTGGTTCAGTTCAC 58.846 52.381 0.00 0.00 0.00 3.18
1738 3060 5.352569 CACTACTCTGTATTCCTGCCAAAAG 59.647 44.000 0.00 0.00 0.00 2.27
1744 3067 3.954904 TCTCCACTACTCTGTATTCCTGC 59.045 47.826 0.00 0.00 0.00 4.85
1771 3094 8.918202 TTACACATTCAGAGGTCAAATACTTT 57.082 30.769 0.00 0.00 0.00 2.66
1935 3258 7.452501 TGGGAAATTCAGACAGAAAGAATTCAT 59.547 33.333 8.44 0.00 40.11 2.57
2009 3332 1.421410 CGTATGCGCTGTCCAAGGAC 61.421 60.000 9.73 12.30 44.77 3.85
2075 3398 5.505181 TTAGGAGCTTCAAGTTGGATCTT 57.495 39.130 2.34 0.00 0.00 2.40
2174 3497 0.249615 TGCTCTATGTGATGCGCCTC 60.250 55.000 4.18 5.02 0.00 4.70
2191 3514 2.109425 ACCGGATGGAGTAGTTTTGC 57.891 50.000 9.46 0.00 39.21 3.68
2322 3914 3.005578 ACTCACGACTTGAAGGTCCTAAC 59.994 47.826 0.00 0.00 32.21 2.34
2341 3933 2.669364 CATCACCAAAAGCAAGCACTC 58.331 47.619 0.00 0.00 0.00 3.51
2392 4523 0.110056 CCACTTGTTCTGCGCATCAC 60.110 55.000 12.24 11.64 0.00 3.06
2665 4808 4.199310 TGCAAGAACACAAGCTAGAGTTT 58.801 39.130 0.00 0.00 0.00 2.66
2668 4811 3.397482 ACTGCAAGAACACAAGCTAGAG 58.603 45.455 0.00 0.00 37.43 2.43
2702 4894 4.142182 CCTCTTTGAAACTGTCCAAAAGCA 60.142 41.667 8.82 0.00 32.63 3.91
2971 5163 1.014564 CGGCCTTCTCTGGAAACGTC 61.015 60.000 0.00 0.00 0.00 4.34
3149 5372 2.817396 GCGAGCTTGGAGTCCTGC 60.817 66.667 11.33 14.45 0.00 4.85
3175 5398 0.442699 GAGCTTGTAAACCGGCTTCG 59.557 55.000 0.00 0.00 35.01 3.79
3201 5424 4.097286 ACCCGGTTGATATGTAATTGTTGC 59.903 41.667 0.00 0.00 0.00 4.17
3257 5483 0.035056 ATTGCCCGAACTCTCCCTTG 60.035 55.000 0.00 0.00 0.00 3.61
3261 5487 0.322546 ACCAATTGCCCGAACTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
3709 6046 1.473257 CGAGATGAATTTCGGCCAGGA 60.473 52.381 2.24 0.00 33.39 3.86
3779 6116 1.470632 CCTTCATCGTGAGACTGCTCC 60.471 57.143 0.00 0.00 46.97 4.70
3871 6217 4.142359 ACCGTCAGTTAGCTACAGATTCTG 60.142 45.833 12.17 12.17 37.52 3.02
3875 6221 3.353557 TCACCGTCAGTTAGCTACAGAT 58.646 45.455 0.00 0.00 0.00 2.90
3893 6239 1.066143 CACTAGTGTGGGGTCCATCAC 60.066 57.143 15.06 7.44 40.33 3.06
3896 6242 0.547712 AGCACTAGTGTGGGGTCCAT 60.548 55.000 23.44 0.00 43.97 3.41
3897 6243 1.152118 AGCACTAGTGTGGGGTCCA 60.152 57.895 23.44 0.00 43.97 4.02
3898 6244 1.192146 TCAGCACTAGTGTGGGGTCC 61.192 60.000 23.44 5.58 43.97 4.46
3904 6250 1.615883 ACAGGAGTCAGCACTAGTGTG 59.384 52.381 23.44 18.77 46.37 3.82
3911 6257 2.005451 CAATAGCACAGGAGTCAGCAC 58.995 52.381 0.00 0.00 0.00 4.40
3970 6317 6.763610 AGTTAGTTATAGGAAGTTGCTCATGC 59.236 38.462 0.00 0.00 40.20 4.06
4127 6717 3.848726 ACCTTTGCAACAGTTTTGACTG 58.151 40.909 0.00 5.09 43.03 3.51
4136 6727 2.884012 TCATGTGGTACCTTTGCAACAG 59.116 45.455 14.36 0.00 0.00 3.16
4229 6825 5.779529 TGAATGCTCTTTTGCTTCTTCTT 57.220 34.783 0.00 0.00 0.00 2.52
4230 6826 5.301298 ACTTGAATGCTCTTTTGCTTCTTCT 59.699 36.000 0.00 0.00 0.00 2.85
4231 6827 5.527033 ACTTGAATGCTCTTTTGCTTCTTC 58.473 37.500 0.00 0.00 0.00 2.87
4405 7016 3.924144 TGCATTTTTACATGGAACCTGC 58.076 40.909 10.11 10.11 0.00 4.85
4428 7039 6.601613 AGAGAGAGACAGACCTATTACTGTTG 59.398 42.308 0.00 0.00 45.54 3.33
4440 7051 3.605634 TGCTCACTAGAGAGAGACAGAC 58.394 50.000 19.94 2.20 44.98 3.51
4443 7054 2.026356 AGCTGCTCACTAGAGAGAGACA 60.026 50.000 19.94 8.26 44.98 3.41
4547 7262 3.819368 TGCCTGTTGAATGTGAGAAAGA 58.181 40.909 0.00 0.00 0.00 2.52
4548 7263 4.458295 AGATGCCTGTTGAATGTGAGAAAG 59.542 41.667 0.00 0.00 0.00 2.62
4612 7415 0.888619 CTCTGTCGTCCAGCCAACTA 59.111 55.000 0.79 0.00 41.25 2.24
4660 7463 1.372748 CATCTCCTGCGGCGATCTC 60.373 63.158 12.98 0.00 0.00 2.75
4668 7471 2.887568 GCGTCACCATCTCCTGCG 60.888 66.667 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.