Multiple sequence alignment - TraesCS7D01G486100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G486100 chr7D 100.000 3122 0 0 1 3122 596431769 596434890 0.000000e+00 5766
1 TraesCS7D01G486100 chr7D 100.000 236 0 0 3497 3732 596435265 596435500 1.590000e-118 436
2 TraesCS7D01G486100 chr7B 96.393 1192 36 1 1931 3122 674592315 674593499 0.000000e+00 1956
3 TraesCS7D01G486100 chr7B 95.799 976 35 2 958 1927 674590551 674591526 0.000000e+00 1570
4 TraesCS7D01G486100 chr7B 92.373 236 14 2 3497 3732 674593787 674594018 2.150000e-87 333
5 TraesCS7D01G486100 chr7A 93.686 1077 63 3 1931 3005 689545401 689546474 0.000000e+00 1607
6 TraesCS7D01G486100 chr7A 95.635 985 41 2 944 1927 689544137 689545120 0.000000e+00 1580
7 TraesCS7D01G486100 chr7A 88.655 238 25 2 3497 3732 689547067 689547304 4.720000e-74 289
8 TraesCS7D01G486100 chr7A 86.061 165 19 1 395 555 689541996 689542160 1.380000e-39 174
9 TraesCS7D01G486100 chr5D 85.714 952 102 20 995 1928 377297701 377296766 0.000000e+00 974
10 TraesCS7D01G486100 chr5B 87.838 814 84 11 1118 1928 450566544 450565743 0.000000e+00 941
11 TraesCS7D01G486100 chr5A 86.667 825 91 15 1107 1928 477809814 477809006 0.000000e+00 896
12 TraesCS7D01G486100 chr5A 79.356 683 112 21 1121 1790 706001324 706000658 1.580000e-123 453
13 TraesCS7D01G486100 chr5A 77.820 523 111 3 2114 2635 477805494 477804976 6.010000e-83 318
14 TraesCS7D01G486100 chr4B 82.196 674 92 11 1118 1788 3914676 3914028 4.210000e-154 555
15 TraesCS7D01G486100 chr6B 80.030 676 103 19 1118 1788 262504189 262503541 4.360000e-129 472
16 TraesCS7D01G486100 chrUn 79.619 682 112 19 1121 1790 134358580 134359246 7.300000e-127 464
17 TraesCS7D01G486100 chr3B 80.000 645 99 14 1127 1767 461500550 461501168 2.040000e-122 449
18 TraesCS7D01G486100 chr3B 84.058 207 24 8 1 203 255983472 255983673 1.370000e-44 191
19 TraesCS7D01G486100 chr1B 79.063 683 114 21 1121 1790 49219124 49218458 3.420000e-120 442
20 TraesCS7D01G486100 chr3D 82.126 207 27 7 1 204 177016070 177016269 6.410000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G486100 chr7D 596431769 596435500 3731 False 3101.000000 5766 100.00000 1 3732 2 chr7D.!!$F1 3731
1 TraesCS7D01G486100 chr7B 674590551 674594018 3467 False 1286.333333 1956 94.85500 958 3732 3 chr7B.!!$F1 2774
2 TraesCS7D01G486100 chr7A 689541996 689547304 5308 False 912.500000 1607 91.00925 395 3732 4 chr7A.!!$F1 3337
3 TraesCS7D01G486100 chr5D 377296766 377297701 935 True 974.000000 974 85.71400 995 1928 1 chr5D.!!$R1 933
4 TraesCS7D01G486100 chr5B 450565743 450566544 801 True 941.000000 941 87.83800 1118 1928 1 chr5B.!!$R1 810
5 TraesCS7D01G486100 chr5A 477804976 477809814 4838 True 607.000000 896 82.24350 1107 2635 2 chr5A.!!$R2 1528
6 TraesCS7D01G486100 chr5A 706000658 706001324 666 True 453.000000 453 79.35600 1121 1790 1 chr5A.!!$R1 669
7 TraesCS7D01G486100 chr4B 3914028 3914676 648 True 555.000000 555 82.19600 1118 1788 1 chr4B.!!$R1 670
8 TraesCS7D01G486100 chr6B 262503541 262504189 648 True 472.000000 472 80.03000 1118 1788 1 chr6B.!!$R1 670
9 TraesCS7D01G486100 chrUn 134358580 134359246 666 False 464.000000 464 79.61900 1121 1790 1 chrUn.!!$F1 669
10 TraesCS7D01G486100 chr3B 461500550 461501168 618 False 449.000000 449 80.00000 1127 1767 1 chr3B.!!$F2 640
11 TraesCS7D01G486100 chr1B 49218458 49219124 666 True 442.000000 442 79.06300 1121 1790 1 chr1B.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.033366 AAAAATCCCGCAGCACAACC 59.967 50.000 0.0 0.0 0.00 3.77 F
380 381 0.107410 TCTCTCTCTCTCTCGGTGGC 60.107 60.000 0.0 0.0 0.00 5.01 F
1051 2726 0.107654 AGTTGCCACGCTAATCCTCC 60.108 55.000 0.0 0.0 0.00 4.30 F
2391 7918 1.079336 GGGTCCAAGACTACCACGC 60.079 63.158 0.0 0.0 37.51 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 2726 0.517755 AGTAGTGAGCACGACACGAG 59.482 55.000 14.65 0.0 42.25 4.18 R
1492 3176 1.081277 GTTCCTCCTCCACCCTCCT 59.919 63.158 0.00 0.0 0.00 3.69 R
2672 8199 1.080705 CCCTCTTCCGTGACGTGAC 60.081 63.158 3.64 0.0 0.00 3.67 R
3648 9368 0.560193 CTCCCCTCAGATCTCCTCCA 59.440 60.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.575965 AAAATTCCTGCAACACGATCC 57.424 42.857 0.00 0.00 0.00 3.36
24 25 1.086696 AATTCCTGCAACACGATCCG 58.913 50.000 0.00 0.00 0.00 4.18
25 26 0.036388 ATTCCTGCAACACGATCCGT 60.036 50.000 0.00 0.00 42.36 4.69
82 83 3.586430 AAAAATCCCGCAGCACAAC 57.414 47.368 0.00 0.00 0.00 3.32
83 84 0.033366 AAAAATCCCGCAGCACAACC 59.967 50.000 0.00 0.00 0.00 3.77
84 85 0.827507 AAAATCCCGCAGCACAACCT 60.828 50.000 0.00 0.00 0.00 3.50
85 86 0.827507 AAATCCCGCAGCACAACCTT 60.828 50.000 0.00 0.00 0.00 3.50
86 87 0.827507 AATCCCGCAGCACAACCTTT 60.828 50.000 0.00 0.00 0.00 3.11
87 88 1.526575 ATCCCGCAGCACAACCTTTG 61.527 55.000 0.00 0.00 0.00 2.77
88 89 2.489275 CCCGCAGCACAACCTTTGT 61.489 57.895 0.00 0.00 46.75 2.83
89 90 1.437160 CCGCAGCACAACCTTTGTT 59.563 52.632 0.00 0.00 43.23 2.83
103 104 6.657888 CAACCTTTGTTGCACAAAATAATCC 58.342 36.000 13.10 0.00 46.15 3.01
104 105 5.304778 ACCTTTGTTGCACAAAATAATCCC 58.695 37.500 13.10 0.00 46.15 3.85
105 106 4.388469 CCTTTGTTGCACAAAATAATCCCG 59.612 41.667 13.10 2.93 46.15 5.14
106 107 4.592485 TTGTTGCACAAAATAATCCCGT 57.408 36.364 0.00 0.00 34.76 5.28
107 108 5.707242 TTGTTGCACAAAATAATCCCGTA 57.293 34.783 0.00 0.00 34.76 4.02
108 109 5.707242 TGTTGCACAAAATAATCCCGTAA 57.293 34.783 0.00 0.00 0.00 3.18
109 110 5.462405 TGTTGCACAAAATAATCCCGTAAC 58.538 37.500 0.00 0.00 0.00 2.50
110 111 5.009710 TGTTGCACAAAATAATCCCGTAACA 59.990 36.000 0.00 0.00 0.00 2.41
111 112 5.906113 TGCACAAAATAATCCCGTAACAT 57.094 34.783 0.00 0.00 0.00 2.71
112 113 7.094334 TGTTGCACAAAATAATCCCGTAACATA 60.094 33.333 0.00 0.00 0.00 2.29
113 114 7.392494 TGCACAAAATAATCCCGTAACATAA 57.608 32.000 0.00 0.00 0.00 1.90
114 115 7.251994 TGCACAAAATAATCCCGTAACATAAC 58.748 34.615 0.00 0.00 0.00 1.89
115 116 6.693978 GCACAAAATAATCCCGTAACATAACC 59.306 38.462 0.00 0.00 0.00 2.85
116 117 7.415877 GCACAAAATAATCCCGTAACATAACCT 60.416 37.037 0.00 0.00 0.00 3.50
117 118 8.126700 CACAAAATAATCCCGTAACATAACCTC 58.873 37.037 0.00 0.00 0.00 3.85
118 119 8.050930 ACAAAATAATCCCGTAACATAACCTCT 58.949 33.333 0.00 0.00 0.00 3.69
119 120 8.342634 CAAAATAATCCCGTAACATAACCTCTG 58.657 37.037 0.00 0.00 0.00 3.35
120 121 6.742559 ATAATCCCGTAACATAACCTCTGT 57.257 37.500 0.00 0.00 0.00 3.41
121 122 5.431179 AATCCCGTAACATAACCTCTGTT 57.569 39.130 0.00 0.00 39.93 3.16
122 123 4.196626 TCCCGTAACATAACCTCTGTTG 57.803 45.455 0.00 0.00 37.41 3.33
123 124 2.676342 CCCGTAACATAACCTCTGTTGC 59.324 50.000 0.00 0.00 37.41 4.17
127 128 5.796350 GTAACATAACCTCTGTTGCGAAT 57.204 39.130 0.00 0.00 37.41 3.34
128 129 4.685169 AACATAACCTCTGTTGCGAATG 57.315 40.909 0.00 0.00 35.57 2.67
129 130 3.674997 ACATAACCTCTGTTGCGAATGT 58.325 40.909 0.00 0.00 35.87 2.71
130 131 3.684788 ACATAACCTCTGTTGCGAATGTC 59.315 43.478 0.00 0.00 35.87 3.06
131 132 2.550830 AACCTCTGTTGCGAATGTCT 57.449 45.000 0.00 0.00 32.13 3.41
132 133 2.550830 ACCTCTGTTGCGAATGTCTT 57.449 45.000 0.00 0.00 0.00 3.01
133 134 2.417719 ACCTCTGTTGCGAATGTCTTC 58.582 47.619 0.00 0.00 0.00 2.87
134 135 5.378671 TAACCTCTGTTGCGAATGTCTTCG 61.379 45.833 3.51 3.51 44.58 3.79
149 150 3.111853 TCTTCGCAACAAGACATCTGT 57.888 42.857 0.00 0.00 0.00 3.41
150 151 3.466836 TCTTCGCAACAAGACATCTGTT 58.533 40.909 0.00 0.00 0.00 3.16
151 152 3.248363 TCTTCGCAACAAGACATCTGTTG 59.752 43.478 10.57 10.57 43.90 3.33
157 158 4.675510 CAACAAGACATCTGTTGCAAAGT 58.324 39.130 0.00 0.00 36.86 2.66
158 159 5.820131 CAACAAGACATCTGTTGCAAAGTA 58.180 37.500 0.00 0.00 36.86 2.24
159 160 5.679734 ACAAGACATCTGTTGCAAAGTAG 57.320 39.130 0.00 0.01 0.00 2.57
160 161 5.368145 ACAAGACATCTGTTGCAAAGTAGA 58.632 37.500 0.00 6.24 0.00 2.59
161 162 6.000219 ACAAGACATCTGTTGCAAAGTAGAT 59.000 36.000 0.00 8.43 32.90 1.98
162 163 6.072838 ACAAGACATCTGTTGCAAAGTAGATG 60.073 38.462 29.38 29.38 46.22 2.90
163 164 5.798132 AGACATCTGTTGCAAAGTAGATGA 58.202 37.500 33.58 15.38 44.86 2.92
164 165 6.233434 AGACATCTGTTGCAAAGTAGATGAA 58.767 36.000 33.58 10.47 44.86 2.57
165 166 6.370994 AGACATCTGTTGCAAAGTAGATGAAG 59.629 38.462 33.58 20.08 44.86 3.02
166 167 6.233434 ACATCTGTTGCAAAGTAGATGAAGA 58.767 36.000 33.58 15.94 44.86 2.87
167 168 6.148480 ACATCTGTTGCAAAGTAGATGAAGAC 59.852 38.462 33.58 11.41 44.86 3.01
168 169 4.686091 TCTGTTGCAAAGTAGATGAAGACG 59.314 41.667 0.00 0.00 0.00 4.18
169 170 4.377021 TGTTGCAAAGTAGATGAAGACGT 58.623 39.130 0.00 0.00 0.00 4.34
170 171 4.814234 TGTTGCAAAGTAGATGAAGACGTT 59.186 37.500 0.00 0.00 0.00 3.99
171 172 5.295787 TGTTGCAAAGTAGATGAAGACGTTT 59.704 36.000 0.00 0.00 0.00 3.60
172 173 5.342806 TGCAAAGTAGATGAAGACGTTTG 57.657 39.130 0.00 0.00 0.00 2.93
173 174 4.213270 TGCAAAGTAGATGAAGACGTTTGG 59.787 41.667 0.00 0.00 0.00 3.28
174 175 4.712763 CAAAGTAGATGAAGACGTTTGGC 58.287 43.478 0.00 0.00 0.00 4.52
175 176 3.963428 AGTAGATGAAGACGTTTGGCT 57.037 42.857 0.00 0.00 0.00 4.75
176 177 3.589988 AGTAGATGAAGACGTTTGGCTG 58.410 45.455 0.00 0.00 0.00 4.85
177 178 2.839486 AGATGAAGACGTTTGGCTGA 57.161 45.000 0.00 0.00 0.00 4.26
178 179 3.340814 AGATGAAGACGTTTGGCTGAT 57.659 42.857 0.00 0.00 0.00 2.90
179 180 3.265791 AGATGAAGACGTTTGGCTGATC 58.734 45.455 0.00 0.00 0.00 2.92
180 181 1.428448 TGAAGACGTTTGGCTGATCG 58.572 50.000 0.00 0.00 0.00 3.69
181 182 1.000394 TGAAGACGTTTGGCTGATCGA 60.000 47.619 0.00 0.00 0.00 3.59
182 183 2.271800 GAAGACGTTTGGCTGATCGAT 58.728 47.619 0.00 0.00 0.00 3.59
183 184 2.386661 AGACGTTTGGCTGATCGATT 57.613 45.000 0.00 0.00 0.00 3.34
184 185 2.002586 AGACGTTTGGCTGATCGATTG 58.997 47.619 0.00 0.00 0.00 2.67
185 186 1.732259 GACGTTTGGCTGATCGATTGT 59.268 47.619 0.00 0.00 0.00 2.71
186 187 1.464608 ACGTTTGGCTGATCGATTGTG 59.535 47.619 0.00 0.00 0.00 3.33
187 188 1.464608 CGTTTGGCTGATCGATTGTGT 59.535 47.619 0.00 0.00 0.00 3.72
188 189 2.670905 CGTTTGGCTGATCGATTGTGTA 59.329 45.455 0.00 0.00 0.00 2.90
189 190 3.242091 CGTTTGGCTGATCGATTGTGTAG 60.242 47.826 0.00 0.00 0.00 2.74
190 191 3.885724 TTGGCTGATCGATTGTGTAGA 57.114 42.857 0.00 0.00 0.00 2.59
191 192 4.406648 TTGGCTGATCGATTGTGTAGAT 57.593 40.909 0.00 0.00 0.00 1.98
192 193 3.982475 TGGCTGATCGATTGTGTAGATC 58.018 45.455 0.00 0.00 38.86 2.75
193 194 3.243873 TGGCTGATCGATTGTGTAGATCC 60.244 47.826 0.00 0.00 37.95 3.36
194 195 2.983136 GCTGATCGATTGTGTAGATCCG 59.017 50.000 0.00 0.00 37.95 4.18
195 196 3.569548 CTGATCGATTGTGTAGATCCGG 58.430 50.000 0.00 0.00 37.95 5.14
196 197 2.956333 TGATCGATTGTGTAGATCCGGT 59.044 45.455 0.00 0.00 37.95 5.28
197 198 2.863401 TCGATTGTGTAGATCCGGTG 57.137 50.000 0.00 0.00 0.00 4.94
198 199 1.407618 TCGATTGTGTAGATCCGGTGG 59.592 52.381 0.00 0.00 0.00 4.61
199 200 1.583054 GATTGTGTAGATCCGGTGGC 58.417 55.000 0.00 0.00 0.00 5.01
200 201 1.139058 GATTGTGTAGATCCGGTGGCT 59.861 52.381 0.00 0.00 0.00 4.75
201 202 0.981183 TTGTGTAGATCCGGTGGCTT 59.019 50.000 0.00 0.00 0.00 4.35
202 203 0.249120 TGTGTAGATCCGGTGGCTTG 59.751 55.000 0.00 0.00 0.00 4.01
203 204 1.090052 GTGTAGATCCGGTGGCTTGC 61.090 60.000 0.00 0.00 0.00 4.01
204 205 1.220749 GTAGATCCGGTGGCTTGCA 59.779 57.895 0.00 0.00 0.00 4.08
205 206 0.392461 GTAGATCCGGTGGCTTGCAA 60.392 55.000 0.00 0.00 0.00 4.08
206 207 0.107703 TAGATCCGGTGGCTTGCAAG 60.108 55.000 22.44 22.44 0.00 4.01
207 208 2.361610 ATCCGGTGGCTTGCAAGG 60.362 61.111 27.10 11.07 0.00 3.61
208 209 3.210012 ATCCGGTGGCTTGCAAGGT 62.210 57.895 27.10 0.00 0.00 3.50
209 210 3.673484 CCGGTGGCTTGCAAGGTG 61.673 66.667 27.10 4.07 0.00 4.00
210 211 3.673484 CGGTGGCTTGCAAGGTGG 61.673 66.667 27.10 3.67 0.00 4.61
211 212 3.994853 GGTGGCTTGCAAGGTGGC 61.995 66.667 27.10 15.43 0.00 5.01
212 213 2.914097 GTGGCTTGCAAGGTGGCT 60.914 61.111 27.10 0.00 34.04 4.75
213 214 2.913578 TGGCTTGCAAGGTGGCTG 60.914 61.111 27.10 1.70 34.04 4.85
214 215 2.598394 GGCTTGCAAGGTGGCTGA 60.598 61.111 27.10 0.00 34.04 4.26
215 216 1.980772 GGCTTGCAAGGTGGCTGAT 60.981 57.895 27.10 0.00 34.04 2.90
216 217 1.509923 GCTTGCAAGGTGGCTGATC 59.490 57.895 27.10 3.94 34.04 2.92
217 218 0.964358 GCTTGCAAGGTGGCTGATCT 60.964 55.000 27.10 0.00 34.04 2.75
218 219 1.542492 CTTGCAAGGTGGCTGATCTT 58.458 50.000 19.14 0.00 34.04 2.40
219 220 1.891150 CTTGCAAGGTGGCTGATCTTT 59.109 47.619 19.14 0.00 34.04 2.52
220 221 1.999648 TGCAAGGTGGCTGATCTTTT 58.000 45.000 0.00 0.00 34.04 2.27
221 222 3.153369 TGCAAGGTGGCTGATCTTTTA 57.847 42.857 0.00 0.00 34.04 1.52
222 223 3.495331 TGCAAGGTGGCTGATCTTTTAA 58.505 40.909 0.00 0.00 34.04 1.52
223 224 3.894427 TGCAAGGTGGCTGATCTTTTAAA 59.106 39.130 0.00 0.00 34.04 1.52
224 225 4.343526 TGCAAGGTGGCTGATCTTTTAAAA 59.656 37.500 0.00 0.00 34.04 1.52
225 226 4.925646 GCAAGGTGGCTGATCTTTTAAAAG 59.074 41.667 19.91 19.91 37.36 2.27
226 227 5.473039 CAAGGTGGCTGATCTTTTAAAAGG 58.527 41.667 24.20 11.65 36.67 3.11
227 228 4.998051 AGGTGGCTGATCTTTTAAAAGGA 58.002 39.130 24.20 13.40 36.67 3.36
228 229 5.583932 AGGTGGCTGATCTTTTAAAAGGAT 58.416 37.500 24.20 16.81 36.67 3.24
229 230 5.654209 AGGTGGCTGATCTTTTAAAAGGATC 59.346 40.000 24.20 22.45 36.67 3.36
230 231 5.163509 GGTGGCTGATCTTTTAAAAGGATCC 60.164 44.000 24.20 17.99 36.67 3.36
231 232 4.640201 TGGCTGATCTTTTAAAAGGATCCG 59.360 41.667 24.20 20.06 36.67 4.18
232 233 4.498177 GGCTGATCTTTTAAAAGGATCCGC 60.498 45.833 26.33 26.33 35.19 5.54
233 234 4.498177 GCTGATCTTTTAAAAGGATCCGCC 60.498 45.833 25.31 16.78 36.67 6.13
234 235 4.594970 TGATCTTTTAAAAGGATCCGCCA 58.405 39.130 24.20 6.20 40.02 5.69
235 236 5.200483 TGATCTTTTAAAAGGATCCGCCAT 58.800 37.500 24.20 10.33 40.02 4.40
236 237 5.656416 TGATCTTTTAAAAGGATCCGCCATT 59.344 36.000 24.20 3.01 40.02 3.16
237 238 5.576447 TCTTTTAAAAGGATCCGCCATTC 57.424 39.130 24.20 0.00 40.02 2.67
238 239 4.095782 TCTTTTAAAAGGATCCGCCATTCG 59.904 41.667 24.20 0.00 40.02 3.34
239 240 2.992124 TAAAAGGATCCGCCATTCGA 57.008 45.000 5.98 0.00 41.67 3.71
240 241 2.348411 AAAAGGATCCGCCATTCGAT 57.652 45.000 5.98 0.00 41.67 3.59
241 242 1.597742 AAAGGATCCGCCATTCGATG 58.402 50.000 5.98 0.00 41.67 3.84
242 243 0.886490 AAGGATCCGCCATTCGATGC 60.886 55.000 5.98 0.00 41.67 3.91
260 261 3.307379 CGTAGCAGGCCCCTAATTC 57.693 57.895 0.00 0.00 0.00 2.17
261 262 0.759346 CGTAGCAGGCCCCTAATTCT 59.241 55.000 0.00 0.00 0.00 2.40
262 263 1.968493 CGTAGCAGGCCCCTAATTCTA 59.032 52.381 0.00 0.00 0.00 2.10
263 264 2.567615 CGTAGCAGGCCCCTAATTCTAT 59.432 50.000 0.00 0.00 0.00 1.98
264 265 3.008049 CGTAGCAGGCCCCTAATTCTATT 59.992 47.826 0.00 0.00 0.00 1.73
265 266 3.515602 AGCAGGCCCCTAATTCTATTG 57.484 47.619 0.00 0.00 0.00 1.90
266 267 2.108952 AGCAGGCCCCTAATTCTATTGG 59.891 50.000 0.00 0.00 0.00 3.16
267 268 2.819348 GCAGGCCCCTAATTCTATTGGG 60.819 54.545 0.00 0.00 39.37 4.12
276 277 6.068670 CCCTAATTCTATTGGGGTTTACAGG 58.931 44.000 11.52 0.00 36.15 4.00
277 278 6.354477 CCCTAATTCTATTGGGGTTTACAGGT 60.354 42.308 11.52 0.00 36.15 4.00
278 279 6.546034 CCTAATTCTATTGGGGTTTACAGGTG 59.454 42.308 0.00 0.00 0.00 4.00
279 280 5.530176 ATTCTATTGGGGTTTACAGGTGT 57.470 39.130 0.00 0.00 0.00 4.16
280 281 4.295141 TCTATTGGGGTTTACAGGTGTG 57.705 45.455 0.00 0.00 0.00 3.82
281 282 2.302587 ATTGGGGTTTACAGGTGTGG 57.697 50.000 0.00 0.00 0.00 4.17
282 283 0.927767 TTGGGGTTTACAGGTGTGGT 59.072 50.000 0.00 0.00 0.00 4.16
283 284 1.817087 TGGGGTTTACAGGTGTGGTA 58.183 50.000 0.00 0.00 0.00 3.25
284 285 2.133520 TGGGGTTTACAGGTGTGGTAA 58.866 47.619 0.00 0.00 0.00 2.85
285 286 2.717515 TGGGGTTTACAGGTGTGGTAAT 59.282 45.455 0.00 0.00 31.36 1.89
286 287 3.140519 TGGGGTTTACAGGTGTGGTAATT 59.859 43.478 0.00 0.00 31.36 1.40
287 288 4.154176 GGGGTTTACAGGTGTGGTAATTT 58.846 43.478 0.00 0.00 31.36 1.82
288 289 4.589798 GGGGTTTACAGGTGTGGTAATTTT 59.410 41.667 0.00 0.00 31.36 1.82
289 290 5.070714 GGGGTTTACAGGTGTGGTAATTTTT 59.929 40.000 0.00 0.00 31.36 1.94
314 315 9.823647 TTTAGATCTTCAATATTCAGTCTGACC 57.176 33.333 0.00 0.00 0.00 4.02
315 316 7.673641 AGATCTTCAATATTCAGTCTGACCT 57.326 36.000 0.78 0.00 0.00 3.85
316 317 8.774546 AGATCTTCAATATTCAGTCTGACCTA 57.225 34.615 0.78 0.00 0.00 3.08
317 318 9.378504 AGATCTTCAATATTCAGTCTGACCTAT 57.621 33.333 0.78 0.43 0.00 2.57
326 327 9.914834 ATATTCAGTCTGACCTATATACCTCTC 57.085 37.037 0.78 0.00 0.00 3.20
327 328 7.395525 TTCAGTCTGACCTATATACCTCTCT 57.604 40.000 0.78 0.00 0.00 3.10
328 329 7.011499 TCAGTCTGACCTATATACCTCTCTC 57.989 44.000 3.76 0.00 0.00 3.20
329 330 6.790461 TCAGTCTGACCTATATACCTCTCTCT 59.210 42.308 3.76 0.00 0.00 3.10
330 331 7.038587 TCAGTCTGACCTATATACCTCTCTCTC 60.039 44.444 3.76 0.00 0.00 3.20
331 332 7.023120 AGTCTGACCTATATACCTCTCTCTCT 58.977 42.308 3.76 0.00 0.00 3.10
332 333 7.180408 AGTCTGACCTATATACCTCTCTCTCTC 59.820 44.444 3.76 0.00 0.00 3.20
333 334 7.180408 GTCTGACCTATATACCTCTCTCTCTCT 59.820 44.444 0.00 0.00 0.00 3.10
334 335 7.399191 TCTGACCTATATACCTCTCTCTCTCTC 59.601 44.444 0.00 0.00 0.00 3.20
335 336 7.253421 TGACCTATATACCTCTCTCTCTCTCT 58.747 42.308 0.00 0.00 0.00 3.10
336 337 7.399191 TGACCTATATACCTCTCTCTCTCTCTC 59.601 44.444 0.00 0.00 0.00 3.20
337 338 7.488205 ACCTATATACCTCTCTCTCTCTCTCT 58.512 42.308 0.00 0.00 0.00 3.10
338 339 7.620094 ACCTATATACCTCTCTCTCTCTCTCTC 59.380 44.444 0.00 0.00 0.00 3.20
339 340 7.841729 CCTATATACCTCTCTCTCTCTCTCTCT 59.158 44.444 0.00 0.00 0.00 3.10
340 341 7.726033 ATATACCTCTCTCTCTCTCTCTCTC 57.274 44.000 0.00 0.00 0.00 3.20
341 342 4.000928 ACCTCTCTCTCTCTCTCTCTCT 57.999 50.000 0.00 0.00 0.00 3.10
342 343 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
343 344 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
344 345 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
345 346 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
346 347 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
347 348 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
348 349 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
349 350 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
350 351 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
351 352 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
352 353 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
353 354 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
354 355 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
355 356 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
356 357 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
357 358 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
358 359 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
359 360 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
360 361 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
361 362 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
362 363 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
363 364 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
364 365 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
365 366 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
366 367 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
367 368 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
368 369 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
369 370 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
370 371 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
371 372 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
372 373 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
373 374 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
374 375 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
375 376 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
376 377 2.959030 TCTCTCTCTCTCTCTCTCTCGG 59.041 54.545 0.00 0.00 0.00 4.63
377 378 2.695666 CTCTCTCTCTCTCTCTCTCGGT 59.304 54.545 0.00 0.00 0.00 4.69
378 379 2.430694 TCTCTCTCTCTCTCTCTCGGTG 59.569 54.545 0.00 0.00 0.00 4.94
379 380 1.484653 TCTCTCTCTCTCTCTCGGTGG 59.515 57.143 0.00 0.00 0.00 4.61
380 381 0.107410 TCTCTCTCTCTCTCGGTGGC 60.107 60.000 0.00 0.00 0.00 5.01
381 382 1.436195 CTCTCTCTCTCTCGGTGGCG 61.436 65.000 0.00 0.00 0.00 5.69
382 383 1.747367 CTCTCTCTCTCGGTGGCGT 60.747 63.158 0.00 0.00 0.00 5.68
383 384 1.987704 CTCTCTCTCTCGGTGGCGTG 61.988 65.000 0.00 0.00 0.00 5.34
384 385 3.057547 CTCTCTCTCGGTGGCGTGG 62.058 68.421 0.00 0.00 0.00 4.94
385 386 4.803426 CTCTCTCGGTGGCGTGGC 62.803 72.222 0.00 0.00 0.00 5.01
442 443 5.066968 TCGCATTGATGTGACACTTACTA 57.933 39.130 7.20 0.00 41.89 1.82
448 449 7.009999 GCATTGATGTGACACTTACTAGAAGAG 59.990 40.741 7.20 0.00 0.00 2.85
449 450 6.516739 TGATGTGACACTTACTAGAAGAGG 57.483 41.667 7.20 0.00 0.00 3.69
459 464 5.875359 ACTTACTAGAAGAGGCCAAATTTCG 59.125 40.000 5.01 0.00 0.00 3.46
466 471 5.355350 AGAAGAGGCCAAATTTCGTTAGATG 59.645 40.000 5.01 0.00 0.00 2.90
472 477 3.851403 CCAAATTTCGTTAGATGTTGGCG 59.149 43.478 0.00 0.00 30.44 5.69
474 479 5.391097 CCAAATTTCGTTAGATGTTGGCGTA 60.391 40.000 0.00 0.00 30.44 4.42
478 483 3.916761 TCGTTAGATGTTGGCGTAGTTT 58.083 40.909 0.00 0.00 0.00 2.66
479 484 4.309099 TCGTTAGATGTTGGCGTAGTTTT 58.691 39.130 0.00 0.00 0.00 2.43
483 488 2.552315 AGATGTTGGCGTAGTTTTGGTG 59.448 45.455 0.00 0.00 0.00 4.17
500 505 0.108019 GTGGAGTTTTGGGACGTCCT 59.892 55.000 32.52 13.23 36.20 3.85
502 507 2.048601 TGGAGTTTTGGGACGTCCTAA 58.951 47.619 32.52 30.04 34.50 2.69
515 520 4.337274 GGACGTCCTAATATTTTTGTGGGG 59.663 45.833 27.64 0.00 0.00 4.96
555 560 4.518970 TCATGTTTTGTGGCCTAACTCTTC 59.481 41.667 3.32 0.00 0.00 2.87
556 561 3.219281 TGTTTTGTGGCCTAACTCTTCC 58.781 45.455 3.32 0.00 0.00 3.46
557 562 3.219281 GTTTTGTGGCCTAACTCTTCCA 58.781 45.455 3.32 0.00 0.00 3.53
558 563 3.586470 TTTGTGGCCTAACTCTTCCAA 57.414 42.857 3.32 0.00 0.00 3.53
562 1506 1.354031 TGGCCTAACTCTTCCAATGCA 59.646 47.619 3.32 0.00 0.00 3.96
568 1512 4.024556 CCTAACTCTTCCAATGCATTAGCG 60.025 45.833 12.53 3.89 46.23 4.26
570 1514 4.137116 ACTCTTCCAATGCATTAGCGTA 57.863 40.909 12.53 0.00 46.23 4.42
592 1536 0.702316 GTACCCCTTCCCACAACCAT 59.298 55.000 0.00 0.00 0.00 3.55
593 1537 0.701731 TACCCCTTCCCACAACCATG 59.298 55.000 0.00 0.00 0.00 3.66
615 1559 2.677836 TGAACAGAGTTGAGTGTTGCAC 59.322 45.455 0.00 0.00 37.02 4.57
630 1574 2.946346 GCACCATGGGGCTTGTTGG 61.946 63.158 32.34 0.00 37.90 3.77
631 1575 2.604382 ACCATGGGGCTTGTTGGC 60.604 61.111 18.09 0.00 37.90 4.52
633 1577 3.762247 CATGGGGCTTGTTGGCGG 61.762 66.667 0.00 0.00 42.84 6.13
639 1583 4.645921 GCTTGTTGGCGGTGGCAC 62.646 66.667 9.70 9.70 42.47 5.01
672 1826 1.187567 GGCCCAAATCAGGTGCTTGT 61.188 55.000 0.00 0.00 0.00 3.16
677 1831 0.598065 AAATCAGGTGCTTGTTCCGC 59.402 50.000 0.00 0.00 0.00 5.54
678 1832 0.537143 AATCAGGTGCTTGTTCCGCA 60.537 50.000 0.00 0.00 34.52 5.69
682 1836 1.734117 GGTGCTTGTTCCGCATTGC 60.734 57.895 0.00 0.00 39.89 3.56
683 1837 1.007502 GTGCTTGTTCCGCATTGCA 60.008 52.632 9.69 0.00 39.89 4.08
684 1838 0.388907 GTGCTTGTTCCGCATTGCAT 60.389 50.000 9.69 0.00 39.89 3.96
685 1839 0.109179 TGCTTGTTCCGCATTGCATC 60.109 50.000 9.69 0.00 33.99 3.91
686 1840 0.803380 GCTTGTTCCGCATTGCATCC 60.803 55.000 9.69 0.00 0.00 3.51
688 1842 0.964700 TTGTTCCGCATTGCATCCAA 59.035 45.000 9.69 3.03 35.01 3.53
691 1845 1.932011 TTCCGCATTGCATCCAACGG 61.932 55.000 9.69 7.58 40.19 4.44
692 1846 2.580326 CGCATTGCATCCAACGGC 60.580 61.111 9.69 0.00 32.95 5.68
693 1847 2.887360 GCATTGCATCCAACGGCT 59.113 55.556 3.15 0.00 33.92 5.52
694 1848 1.226773 GCATTGCATCCAACGGCTC 60.227 57.895 3.15 0.00 33.92 4.70
695 1849 1.660560 GCATTGCATCCAACGGCTCT 61.661 55.000 3.15 0.00 33.92 4.09
696 1850 1.667236 CATTGCATCCAACGGCTCTA 58.333 50.000 0.00 0.00 32.95 2.43
697 1851 1.331756 CATTGCATCCAACGGCTCTAC 59.668 52.381 0.00 0.00 32.95 2.59
698 1852 0.739462 TTGCATCCAACGGCTCTACG 60.739 55.000 0.00 0.00 40.31 3.51
699 1853 1.883084 GCATCCAACGGCTCTACGG 60.883 63.158 0.00 0.00 38.39 4.02
700 1854 1.227263 CATCCAACGGCTCTACGGG 60.227 63.158 0.00 0.00 38.39 5.28
701 1855 1.684734 ATCCAACGGCTCTACGGGT 60.685 57.895 0.00 0.00 38.39 5.28
702 1856 1.956629 ATCCAACGGCTCTACGGGTG 61.957 60.000 0.00 0.00 38.39 4.61
703 1857 2.813908 CAACGGCTCTACGGGTGC 60.814 66.667 0.00 0.00 38.39 5.01
708 1862 4.126524 GCTCTACGGGTGCCAATC 57.873 61.111 0.00 0.00 0.00 2.67
709 1863 1.883084 GCTCTACGGGTGCCAATCG 60.883 63.158 0.00 0.00 0.00 3.34
710 1864 1.813859 CTCTACGGGTGCCAATCGA 59.186 57.895 0.00 0.00 0.00 3.59
711 1865 0.174845 CTCTACGGGTGCCAATCGAA 59.825 55.000 0.00 0.00 0.00 3.71
712 1866 0.828022 TCTACGGGTGCCAATCGAAT 59.172 50.000 0.00 0.00 0.00 3.34
713 1867 1.202486 TCTACGGGTGCCAATCGAATC 60.202 52.381 0.00 0.00 0.00 2.52
714 1868 0.179067 TACGGGTGCCAATCGAATCC 60.179 55.000 0.00 0.00 0.00 3.01
715 1869 1.451207 CGGGTGCCAATCGAATCCA 60.451 57.895 0.00 0.00 0.00 3.41
716 1870 0.819259 CGGGTGCCAATCGAATCCAT 60.819 55.000 0.00 0.00 0.00 3.41
717 1871 0.670162 GGGTGCCAATCGAATCCATG 59.330 55.000 0.00 0.00 0.00 3.66
718 1872 0.670162 GGTGCCAATCGAATCCATGG 59.330 55.000 4.97 4.97 36.00 3.66
719 1873 0.670162 GTGCCAATCGAATCCATGGG 59.330 55.000 13.02 0.00 33.45 4.00
720 1874 0.258484 TGCCAATCGAATCCATGGGT 59.742 50.000 13.02 0.00 33.45 4.51
721 1875 0.954452 GCCAATCGAATCCATGGGTC 59.046 55.000 13.02 9.05 33.45 4.46
722 1876 1.750332 GCCAATCGAATCCATGGGTCA 60.750 52.381 13.02 0.00 33.45 4.02
723 1877 2.653726 CCAATCGAATCCATGGGTCAA 58.346 47.619 13.02 0.00 0.00 3.18
724 1878 3.023119 CCAATCGAATCCATGGGTCAAA 58.977 45.455 13.02 1.76 0.00 2.69
725 1879 3.446873 CCAATCGAATCCATGGGTCAAAA 59.553 43.478 13.02 0.00 0.00 2.44
726 1880 4.081752 CCAATCGAATCCATGGGTCAAAAA 60.082 41.667 13.02 0.00 0.00 1.94
837 1991 8.548877 AGTAATACCAATGTTGTAGGAGAACAT 58.451 33.333 0.00 0.00 44.21 2.71
863 2017 1.202268 CCACCGACGACTTCCATCTAC 60.202 57.143 0.00 0.00 0.00 2.59
870 2024 2.500504 ACGACTTCCATCTACCCCTTTC 59.499 50.000 0.00 0.00 0.00 2.62
872 2026 3.134804 CGACTTCCATCTACCCCTTTCAT 59.865 47.826 0.00 0.00 0.00 2.57
886 2040 5.187576 ACCCCTTTCATTTATGTGGACAATG 59.812 40.000 0.00 0.00 0.00 2.82
892 2048 8.628630 TTTCATTTATGTGGACAATGTCACTA 57.371 30.769 15.86 0.56 33.68 2.74
900 2056 7.202016 TGTGGACAATGTCACTAAAATCTTC 57.798 36.000 15.86 0.00 33.68 2.87
960 2626 8.363390 GCATCAAGATATATACAGCTAGCCATA 58.637 37.037 12.13 7.40 0.00 2.74
970 2636 3.054434 ACAGCTAGCCATACACCATTTGA 60.054 43.478 12.13 0.00 0.00 2.69
1011 2677 1.077501 CACCACGATGCCATTCCCT 60.078 57.895 0.00 0.00 0.00 4.20
1012 2678 0.180171 CACCACGATGCCATTCCCTA 59.820 55.000 0.00 0.00 0.00 3.53
1051 2726 0.107654 AGTTGCCACGCTAATCCTCC 60.108 55.000 0.00 0.00 0.00 4.30
1128 2806 3.691342 CAACGACTCCCGCCCTCA 61.691 66.667 0.00 0.00 43.32 3.86
1316 3000 2.825836 GGACCATGCCTTCGCCAG 60.826 66.667 0.00 0.00 0.00 4.85
1585 3269 3.636313 GACGTGAACGGGCGGATCA 62.636 63.158 7.86 0.84 44.95 2.92
1593 3277 3.928779 GGGCGGATCATGCTCGGA 61.929 66.667 8.16 0.00 0.00 4.55
1928 3622 3.380954 GTCAAGGCACTACTAGAGGTACC 59.619 52.174 2.73 2.73 38.49 3.34
1929 3623 2.345124 AGGCACTACTAGAGGTACCG 57.655 55.000 6.18 0.00 36.02 4.02
2054 5988 9.159364 CTCTTGATCAACACATTCTAAGAATCA 57.841 33.333 3.38 0.00 0.00 2.57
2155 7682 1.133216 ACAGACTCGACCATCATCGTG 59.867 52.381 0.00 0.00 42.80 4.35
2179 7706 2.615227 AATGGGTCATGGCCGAGCTC 62.615 60.000 10.95 2.73 33.84 4.09
2363 7890 2.225382 TGTTCCCCGTGAGTCTATGA 57.775 50.000 0.00 0.00 0.00 2.15
2391 7918 1.079336 GGGTCCAAGACTACCACGC 60.079 63.158 0.00 0.00 37.51 5.34
2620 8147 1.995376 CTAACCTTGTGGGGCACTTT 58.005 50.000 0.00 0.00 40.03 2.66
2672 8199 1.402896 TATGGAAGAGGCGCCAGGAG 61.403 60.000 31.54 0.00 37.64 3.69
2764 8291 0.665835 TGCACCCACGTTGTTGAATC 59.334 50.000 0.00 0.00 0.00 2.52
2855 8382 3.432467 CCCACGGTAATAGGTTACATGCA 60.432 47.826 0.00 0.00 41.59 3.96
2943 8470 1.985159 AGACTTGCATGTGGGTAGGAA 59.015 47.619 10.37 0.00 0.00 3.36
3035 8755 5.335504 GCTGGCTATATGCTGGATCTTTTTC 60.336 44.000 0.00 0.00 42.39 2.29
3049 8769 6.374333 TGGATCTTTTTCTAGTGGTTACATGC 59.626 38.462 0.00 0.00 0.00 4.06
3114 8834 8.397957 AGGACACTTGTATCATAGATCTCCTAT 58.602 37.037 0.00 0.00 38.59 2.57
3595 9315 3.274288 GTCCAGATCTTTTGGTAGCTGG 58.726 50.000 0.00 0.00 43.20 4.85
3609 9329 3.248602 GGTAGCTGGCATCGTTTATCTTG 59.751 47.826 0.00 0.00 0.00 3.02
3624 9344 2.033448 TTGATGGTCGGGTGGTGC 59.967 61.111 0.00 0.00 0.00 5.01
3648 9368 3.174779 GTGGAGAGAAGGGTTTCTAGGT 58.825 50.000 0.00 0.00 43.63 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.611530 CGGATCGTGTTGCAGGAATTTTT 60.612 43.478 0.00 0.00 32.06 1.94
3 4 2.095263 CGGATCGTGTTGCAGGAATTTT 60.095 45.455 0.00 0.00 32.06 1.82
4 5 1.468520 CGGATCGTGTTGCAGGAATTT 59.531 47.619 0.00 0.00 32.06 1.82
5 6 1.086696 CGGATCGTGTTGCAGGAATT 58.913 50.000 0.00 0.00 32.06 2.17
6 7 0.036388 ACGGATCGTGTTGCAGGAAT 60.036 50.000 0.00 0.00 39.18 3.01
7 8 1.369692 ACGGATCGTGTTGCAGGAA 59.630 52.632 0.00 0.00 39.18 3.36
8 9 3.056458 ACGGATCGTGTTGCAGGA 58.944 55.556 0.00 0.00 39.18 3.86
64 65 0.033366 GGTTGTGCTGCGGGATTTTT 59.967 50.000 0.00 0.00 0.00 1.94
65 66 0.827507 AGGTTGTGCTGCGGGATTTT 60.828 50.000 0.00 0.00 0.00 1.82
66 67 0.827507 AAGGTTGTGCTGCGGGATTT 60.828 50.000 0.00 0.00 0.00 2.17
67 68 0.827507 AAAGGTTGTGCTGCGGGATT 60.828 50.000 0.00 0.00 0.00 3.01
68 69 1.228552 AAAGGTTGTGCTGCGGGAT 60.229 52.632 0.00 0.00 0.00 3.85
69 70 2.192861 CAAAGGTTGTGCTGCGGGA 61.193 57.895 0.00 0.00 0.00 5.14
70 71 2.015227 AACAAAGGTTGTGCTGCGGG 62.015 55.000 0.00 0.00 44.59 6.13
71 72 1.437160 AACAAAGGTTGTGCTGCGG 59.563 52.632 0.00 0.00 44.59 5.69
87 88 5.462405 TGTTACGGGATTATTTTGTGCAAC 58.538 37.500 0.00 0.00 37.35 4.17
88 89 5.707242 TGTTACGGGATTATTTTGTGCAA 57.293 34.783 0.00 0.00 0.00 4.08
89 90 5.906113 ATGTTACGGGATTATTTTGTGCA 57.094 34.783 0.00 0.00 0.00 4.57
90 91 6.693978 GGTTATGTTACGGGATTATTTTGTGC 59.306 38.462 0.00 0.00 0.00 4.57
91 92 7.992008 AGGTTATGTTACGGGATTATTTTGTG 58.008 34.615 0.00 0.00 0.00 3.33
92 93 8.050930 AGAGGTTATGTTACGGGATTATTTTGT 58.949 33.333 0.00 0.00 0.00 2.83
93 94 8.342634 CAGAGGTTATGTTACGGGATTATTTTG 58.657 37.037 0.00 0.00 0.00 2.44
94 95 8.050930 ACAGAGGTTATGTTACGGGATTATTTT 58.949 33.333 0.00 0.00 0.00 1.82
95 96 7.571025 ACAGAGGTTATGTTACGGGATTATTT 58.429 34.615 0.00 0.00 0.00 1.40
96 97 7.133133 ACAGAGGTTATGTTACGGGATTATT 57.867 36.000 0.00 0.00 0.00 1.40
97 98 6.742559 ACAGAGGTTATGTTACGGGATTAT 57.257 37.500 0.00 0.00 0.00 1.28
98 99 6.342906 CAACAGAGGTTATGTTACGGGATTA 58.657 40.000 0.00 0.00 38.80 1.75
99 100 5.183228 CAACAGAGGTTATGTTACGGGATT 58.817 41.667 0.00 0.00 38.80 3.01
100 101 4.766375 CAACAGAGGTTATGTTACGGGAT 58.234 43.478 0.00 0.00 38.80 3.85
101 102 3.618019 GCAACAGAGGTTATGTTACGGGA 60.618 47.826 0.00 0.00 38.80 5.14
102 103 2.676342 GCAACAGAGGTTATGTTACGGG 59.324 50.000 0.00 0.00 38.80 5.28
103 104 2.347452 CGCAACAGAGGTTATGTTACGG 59.653 50.000 4.04 0.00 41.49 4.02
104 105 3.247442 TCGCAACAGAGGTTATGTTACG 58.753 45.455 5.35 5.35 44.77 3.18
105 106 5.121768 ACATTCGCAACAGAGGTTATGTTAC 59.878 40.000 0.00 0.00 38.80 2.50
106 107 5.242434 ACATTCGCAACAGAGGTTATGTTA 58.758 37.500 0.00 0.00 38.80 2.41
107 108 4.072131 ACATTCGCAACAGAGGTTATGTT 58.928 39.130 0.00 0.00 41.47 2.71
108 109 3.674997 ACATTCGCAACAGAGGTTATGT 58.325 40.909 0.00 0.00 34.87 2.29
109 110 3.935203 AGACATTCGCAACAGAGGTTATG 59.065 43.478 0.00 0.00 34.87 1.90
110 111 4.207891 AGACATTCGCAACAGAGGTTAT 57.792 40.909 0.00 0.00 34.87 1.89
111 112 3.678056 AGACATTCGCAACAGAGGTTA 57.322 42.857 0.00 0.00 34.87 2.85
112 113 2.550830 AGACATTCGCAACAGAGGTT 57.449 45.000 0.00 0.00 37.87 3.50
113 114 2.417719 GAAGACATTCGCAACAGAGGT 58.582 47.619 0.00 0.00 0.00 3.85
129 130 3.111853 ACAGATGTCTTGTTGCGAAGA 57.888 42.857 0.00 0.00 0.00 2.87
130 131 3.548587 CAACAGATGTCTTGTTGCGAAG 58.451 45.455 5.32 0.00 36.86 3.79
131 132 3.607422 CAACAGATGTCTTGTTGCGAA 57.393 42.857 5.32 0.00 36.86 4.70
135 136 4.675510 ACTTTGCAACAGATGTCTTGTTG 58.324 39.130 12.40 12.40 43.90 3.33
136 137 4.989279 ACTTTGCAACAGATGTCTTGTT 57.011 36.364 0.00 0.00 0.00 2.83
137 138 5.368145 TCTACTTTGCAACAGATGTCTTGT 58.632 37.500 0.00 0.00 0.00 3.16
138 139 5.929697 TCTACTTTGCAACAGATGTCTTG 57.070 39.130 0.00 0.00 0.00 3.02
139 140 6.233434 TCATCTACTTTGCAACAGATGTCTT 58.767 36.000 27.61 6.83 43.14 3.01
140 141 5.798132 TCATCTACTTTGCAACAGATGTCT 58.202 37.500 27.61 7.10 43.14 3.41
141 142 6.369890 TCTTCATCTACTTTGCAACAGATGTC 59.630 38.462 27.61 0.00 43.14 3.06
142 143 6.148480 GTCTTCATCTACTTTGCAACAGATGT 59.852 38.462 27.61 14.64 43.14 3.06
143 144 6.541086 GTCTTCATCTACTTTGCAACAGATG 58.459 40.000 25.32 25.32 43.71 2.90
144 145 5.349817 CGTCTTCATCTACTTTGCAACAGAT 59.650 40.000 0.00 5.09 0.00 2.90
145 146 4.686091 CGTCTTCATCTACTTTGCAACAGA 59.314 41.667 0.00 2.59 0.00 3.41
146 147 4.449068 ACGTCTTCATCTACTTTGCAACAG 59.551 41.667 0.00 2.74 0.00 3.16
147 148 4.377021 ACGTCTTCATCTACTTTGCAACA 58.623 39.130 0.00 0.00 0.00 3.33
148 149 4.992381 ACGTCTTCATCTACTTTGCAAC 57.008 40.909 0.00 0.00 0.00 4.17
149 150 5.277779 CCAAACGTCTTCATCTACTTTGCAA 60.278 40.000 0.00 0.00 0.00 4.08
150 151 4.213270 CCAAACGTCTTCATCTACTTTGCA 59.787 41.667 0.00 0.00 0.00 4.08
151 152 4.712763 CCAAACGTCTTCATCTACTTTGC 58.287 43.478 0.00 0.00 0.00 3.68
152 153 4.452455 AGCCAAACGTCTTCATCTACTTTG 59.548 41.667 0.00 0.00 0.00 2.77
153 154 4.452455 CAGCCAAACGTCTTCATCTACTTT 59.548 41.667 0.00 0.00 0.00 2.66
154 155 3.997021 CAGCCAAACGTCTTCATCTACTT 59.003 43.478 0.00 0.00 0.00 2.24
155 156 3.258372 TCAGCCAAACGTCTTCATCTACT 59.742 43.478 0.00 0.00 0.00 2.57
156 157 3.585862 TCAGCCAAACGTCTTCATCTAC 58.414 45.455 0.00 0.00 0.00 2.59
157 158 3.953712 TCAGCCAAACGTCTTCATCTA 57.046 42.857 0.00 0.00 0.00 1.98
158 159 2.839486 TCAGCCAAACGTCTTCATCT 57.161 45.000 0.00 0.00 0.00 2.90
159 160 2.029728 CGATCAGCCAAACGTCTTCATC 59.970 50.000 0.00 0.00 0.00 2.92
160 161 2.002586 CGATCAGCCAAACGTCTTCAT 58.997 47.619 0.00 0.00 0.00 2.57
161 162 1.000394 TCGATCAGCCAAACGTCTTCA 60.000 47.619 0.00 0.00 0.00 3.02
162 163 1.710013 TCGATCAGCCAAACGTCTTC 58.290 50.000 0.00 0.00 0.00 2.87
163 164 2.386661 ATCGATCAGCCAAACGTCTT 57.613 45.000 0.00 0.00 0.00 3.01
164 165 2.002586 CAATCGATCAGCCAAACGTCT 58.997 47.619 0.00 0.00 0.00 4.18
165 166 1.732259 ACAATCGATCAGCCAAACGTC 59.268 47.619 0.00 0.00 0.00 4.34
166 167 1.464608 CACAATCGATCAGCCAAACGT 59.535 47.619 0.00 0.00 0.00 3.99
167 168 1.464608 ACACAATCGATCAGCCAAACG 59.535 47.619 0.00 0.00 0.00 3.60
168 169 3.932710 TCTACACAATCGATCAGCCAAAC 59.067 43.478 0.00 0.00 0.00 2.93
169 170 4.200838 TCTACACAATCGATCAGCCAAA 57.799 40.909 0.00 0.00 0.00 3.28
170 171 3.885724 TCTACACAATCGATCAGCCAA 57.114 42.857 0.00 0.00 0.00 4.52
171 172 3.243873 GGATCTACACAATCGATCAGCCA 60.244 47.826 0.00 0.00 36.22 4.75
172 173 3.321497 GGATCTACACAATCGATCAGCC 58.679 50.000 0.00 0.00 36.22 4.85
173 174 2.983136 CGGATCTACACAATCGATCAGC 59.017 50.000 0.00 0.00 36.22 4.26
174 175 3.004839 ACCGGATCTACACAATCGATCAG 59.995 47.826 9.46 0.00 36.22 2.90
175 176 2.956333 ACCGGATCTACACAATCGATCA 59.044 45.455 9.46 0.00 36.22 2.92
176 177 3.309388 CACCGGATCTACACAATCGATC 58.691 50.000 9.46 0.00 34.30 3.69
177 178 2.035961 CCACCGGATCTACACAATCGAT 59.964 50.000 9.46 0.00 0.00 3.59
178 179 1.407618 CCACCGGATCTACACAATCGA 59.592 52.381 9.46 0.00 0.00 3.59
179 180 1.852942 CCACCGGATCTACACAATCG 58.147 55.000 9.46 0.00 0.00 3.34
180 181 1.139058 AGCCACCGGATCTACACAATC 59.861 52.381 9.46 0.00 0.00 2.67
181 182 1.204146 AGCCACCGGATCTACACAAT 58.796 50.000 9.46 0.00 0.00 2.71
182 183 0.981183 AAGCCACCGGATCTACACAA 59.019 50.000 9.46 0.00 0.00 3.33
183 184 0.249120 CAAGCCACCGGATCTACACA 59.751 55.000 9.46 0.00 0.00 3.72
184 185 1.090052 GCAAGCCACCGGATCTACAC 61.090 60.000 9.46 0.00 0.00 2.90
185 186 1.220749 GCAAGCCACCGGATCTACA 59.779 57.895 9.46 0.00 0.00 2.74
186 187 0.392461 TTGCAAGCCACCGGATCTAC 60.392 55.000 9.46 0.00 0.00 2.59
187 188 0.107703 CTTGCAAGCCACCGGATCTA 60.108 55.000 14.65 0.00 0.00 1.98
188 189 1.377725 CTTGCAAGCCACCGGATCT 60.378 57.895 14.65 0.00 0.00 2.75
189 190 2.409870 CCTTGCAAGCCACCGGATC 61.410 63.158 21.43 0.00 0.00 3.36
190 191 2.361610 CCTTGCAAGCCACCGGAT 60.362 61.111 21.43 0.00 0.00 4.18
191 192 3.884774 ACCTTGCAAGCCACCGGA 61.885 61.111 21.43 0.00 0.00 5.14
192 193 3.673484 CACCTTGCAAGCCACCGG 61.673 66.667 21.43 9.76 0.00 5.28
193 194 3.673484 CCACCTTGCAAGCCACCG 61.673 66.667 21.43 9.43 0.00 4.94
194 195 3.994853 GCCACCTTGCAAGCCACC 61.995 66.667 21.43 5.38 0.00 4.61
195 196 2.914097 AGCCACCTTGCAAGCCAC 60.914 61.111 21.43 9.61 0.00 5.01
196 197 2.718487 ATCAGCCACCTTGCAAGCCA 62.718 55.000 21.43 0.69 0.00 4.75
197 198 1.941999 GATCAGCCACCTTGCAAGCC 61.942 60.000 21.43 8.51 0.00 4.35
198 199 0.964358 AGATCAGCCACCTTGCAAGC 60.964 55.000 21.43 10.67 0.00 4.01
199 200 1.542492 AAGATCAGCCACCTTGCAAG 58.458 50.000 19.93 19.93 0.00 4.01
200 201 1.999648 AAAGATCAGCCACCTTGCAA 58.000 45.000 0.00 0.00 0.00 4.08
201 202 1.999648 AAAAGATCAGCCACCTTGCA 58.000 45.000 0.00 0.00 0.00 4.08
202 203 4.519540 TTTAAAAGATCAGCCACCTTGC 57.480 40.909 0.00 0.00 0.00 4.01
203 204 5.243730 TCCTTTTAAAAGATCAGCCACCTTG 59.756 40.000 26.11 7.42 38.28 3.61
204 205 5.393866 TCCTTTTAAAAGATCAGCCACCTT 58.606 37.500 26.11 0.00 38.28 3.50
205 206 4.998051 TCCTTTTAAAAGATCAGCCACCT 58.002 39.130 26.11 0.00 38.28 4.00
206 207 5.163509 GGATCCTTTTAAAAGATCAGCCACC 60.164 44.000 26.11 14.05 38.28 4.61
207 208 5.449177 CGGATCCTTTTAAAAGATCAGCCAC 60.449 44.000 26.11 13.04 38.28 5.01
208 209 4.640201 CGGATCCTTTTAAAAGATCAGCCA 59.360 41.667 26.11 4.49 38.28 4.75
209 210 4.498177 GCGGATCCTTTTAAAAGATCAGCC 60.498 45.833 29.05 22.70 37.53 4.85
210 211 4.498177 GGCGGATCCTTTTAAAAGATCAGC 60.498 45.833 30.01 30.01 39.62 4.26
211 212 4.640201 TGGCGGATCCTTTTAAAAGATCAG 59.360 41.667 26.11 23.31 38.28 2.90
212 213 4.594970 TGGCGGATCCTTTTAAAAGATCA 58.405 39.130 26.11 11.87 38.28 2.92
213 214 5.774498 ATGGCGGATCCTTTTAAAAGATC 57.226 39.130 26.11 22.78 38.28 2.75
214 215 5.221048 CGAATGGCGGATCCTTTTAAAAGAT 60.221 40.000 26.11 17.53 35.72 2.40
215 216 4.095782 CGAATGGCGGATCCTTTTAAAAGA 59.904 41.667 26.11 14.09 35.72 2.52
216 217 4.095782 TCGAATGGCGGATCCTTTTAAAAG 59.904 41.667 19.19 19.19 41.33 2.27
217 218 4.011023 TCGAATGGCGGATCCTTTTAAAA 58.989 39.130 10.75 0.00 41.33 1.52
218 219 3.611970 TCGAATGGCGGATCCTTTTAAA 58.388 40.909 10.75 0.00 41.33 1.52
219 220 3.269538 TCGAATGGCGGATCCTTTTAA 57.730 42.857 10.75 0.00 41.33 1.52
220 221 2.992124 TCGAATGGCGGATCCTTTTA 57.008 45.000 10.75 0.00 41.33 1.52
221 222 1.949525 CATCGAATGGCGGATCCTTTT 59.050 47.619 10.75 0.00 41.33 2.27
222 223 1.597742 CATCGAATGGCGGATCCTTT 58.402 50.000 10.75 0.00 41.33 3.11
223 224 0.886490 GCATCGAATGGCGGATCCTT 60.886 55.000 10.75 0.00 41.33 3.36
224 225 1.302033 GCATCGAATGGCGGATCCT 60.302 57.895 10.75 0.00 41.33 3.24
225 226 3.257933 GCATCGAATGGCGGATCC 58.742 61.111 0.00 0.00 41.33 3.36
231 232 1.566563 CTGCTACGCATCGAATGGC 59.433 57.895 0.00 0.00 38.13 4.40
232 233 1.835483 GCCTGCTACGCATCGAATGG 61.835 60.000 0.00 0.00 38.13 3.16
233 234 1.566563 GCCTGCTACGCATCGAATG 59.433 57.895 0.00 0.00 38.13 2.67
234 235 1.595382 GGCCTGCTACGCATCGAAT 60.595 57.895 0.00 0.00 38.13 3.34
235 236 2.202878 GGCCTGCTACGCATCGAA 60.203 61.111 0.00 0.00 38.13 3.71
236 237 4.221422 GGGCCTGCTACGCATCGA 62.221 66.667 0.84 0.00 38.13 3.59
238 239 2.040009 TTAGGGGCCTGCTACGCATC 62.040 60.000 0.84 0.00 38.13 3.91
239 240 1.418908 ATTAGGGGCCTGCTACGCAT 61.419 55.000 0.84 0.00 38.13 4.73
240 241 1.632018 AATTAGGGGCCTGCTACGCA 61.632 55.000 0.84 0.00 36.92 5.24
241 242 0.885150 GAATTAGGGGCCTGCTACGC 60.885 60.000 0.84 0.00 0.00 4.42
242 243 0.759346 AGAATTAGGGGCCTGCTACG 59.241 55.000 0.84 0.00 0.00 3.51
243 244 4.327680 CAATAGAATTAGGGGCCTGCTAC 58.672 47.826 0.84 0.00 0.00 3.58
244 245 3.330701 CCAATAGAATTAGGGGCCTGCTA 59.669 47.826 0.84 0.00 0.00 3.49
245 246 2.108952 CCAATAGAATTAGGGGCCTGCT 59.891 50.000 0.84 0.00 0.00 4.24
246 247 2.519013 CCAATAGAATTAGGGGCCTGC 58.481 52.381 0.84 0.00 0.00 4.85
247 248 3.160679 CCCAATAGAATTAGGGGCCTG 57.839 52.381 0.84 0.00 37.66 4.85
252 253 6.068670 CCTGTAAACCCCAATAGAATTAGGG 58.931 44.000 2.06 2.06 43.88 3.53
253 254 6.546034 CACCTGTAAACCCCAATAGAATTAGG 59.454 42.308 0.00 0.00 0.00 2.69
254 255 7.067008 CACACCTGTAAACCCCAATAGAATTAG 59.933 40.741 0.00 0.00 0.00 1.73
255 256 6.887545 CACACCTGTAAACCCCAATAGAATTA 59.112 38.462 0.00 0.00 0.00 1.40
256 257 5.714806 CACACCTGTAAACCCCAATAGAATT 59.285 40.000 0.00 0.00 0.00 2.17
257 258 5.261216 CACACCTGTAAACCCCAATAGAAT 58.739 41.667 0.00 0.00 0.00 2.40
258 259 4.507691 CCACACCTGTAAACCCCAATAGAA 60.508 45.833 0.00 0.00 0.00 2.10
259 260 3.009695 CCACACCTGTAAACCCCAATAGA 59.990 47.826 0.00 0.00 0.00 1.98
260 261 3.245122 ACCACACCTGTAAACCCCAATAG 60.245 47.826 0.00 0.00 0.00 1.73
261 262 2.717515 ACCACACCTGTAAACCCCAATA 59.282 45.455 0.00 0.00 0.00 1.90
262 263 1.501604 ACCACACCTGTAAACCCCAAT 59.498 47.619 0.00 0.00 0.00 3.16
263 264 0.927767 ACCACACCTGTAAACCCCAA 59.072 50.000 0.00 0.00 0.00 4.12
264 265 1.817087 TACCACACCTGTAAACCCCA 58.183 50.000 0.00 0.00 0.00 4.96
265 266 2.955342 TTACCACACCTGTAAACCCC 57.045 50.000 0.00 0.00 0.00 4.95
266 267 5.794726 AAAATTACCACACCTGTAAACCC 57.205 39.130 0.00 0.00 32.37 4.11
288 289 9.823647 GGTCAGACTGAATATTGAAGATCTAAA 57.176 33.333 6.76 0.00 0.00 1.85
289 290 9.206690 AGGTCAGACTGAATATTGAAGATCTAA 57.793 33.333 6.76 0.00 0.00 2.10
290 291 8.774546 AGGTCAGACTGAATATTGAAGATCTA 57.225 34.615 6.76 0.00 0.00 1.98
291 292 7.673641 AGGTCAGACTGAATATTGAAGATCT 57.326 36.000 6.76 0.00 0.00 2.75
300 301 9.914834 GAGAGGTATATAGGTCAGACTGAATAT 57.085 37.037 6.76 11.00 0.00 1.28
301 302 9.118367 AGAGAGGTATATAGGTCAGACTGAATA 57.882 37.037 6.76 3.97 0.00 1.75
302 303 7.995663 AGAGAGGTATATAGGTCAGACTGAAT 58.004 38.462 6.76 1.59 0.00 2.57
303 304 7.293771 AGAGAGAGGTATATAGGTCAGACTGAA 59.706 40.741 6.76 0.00 0.00 3.02
304 305 6.790461 AGAGAGAGGTATATAGGTCAGACTGA 59.210 42.308 0.00 0.00 0.00 3.41
305 306 7.016153 AGAGAGAGGTATATAGGTCAGACTG 57.984 44.000 0.00 0.00 0.00 3.51
306 307 7.023120 AGAGAGAGAGGTATATAGGTCAGACT 58.977 42.308 0.00 0.00 0.00 3.24
307 308 7.180408 AGAGAGAGAGAGGTATATAGGTCAGAC 59.820 44.444 0.00 0.00 0.00 3.51
308 309 7.253421 AGAGAGAGAGAGGTATATAGGTCAGA 58.747 42.308 0.00 0.00 0.00 3.27
309 310 7.400339 AGAGAGAGAGAGAGGTATATAGGTCAG 59.600 44.444 0.00 0.00 0.00 3.51
310 311 7.253421 AGAGAGAGAGAGAGGTATATAGGTCA 58.747 42.308 0.00 0.00 0.00 4.02
311 312 7.620094 AGAGAGAGAGAGAGAGGTATATAGGTC 59.380 44.444 0.00 0.00 0.00 3.85
312 313 7.488205 AGAGAGAGAGAGAGAGGTATATAGGT 58.512 42.308 0.00 0.00 0.00 3.08
313 314 7.841729 AGAGAGAGAGAGAGAGAGGTATATAGG 59.158 44.444 0.00 0.00 0.00 2.57
314 315 8.830915 AGAGAGAGAGAGAGAGAGGTATATAG 57.169 42.308 0.00 0.00 0.00 1.31
315 316 8.624670 AGAGAGAGAGAGAGAGAGAGGTATATA 58.375 40.741 0.00 0.00 0.00 0.86
316 317 7.483018 AGAGAGAGAGAGAGAGAGAGGTATAT 58.517 42.308 0.00 0.00 0.00 0.86
317 318 6.864421 AGAGAGAGAGAGAGAGAGAGGTATA 58.136 44.000 0.00 0.00 0.00 1.47
318 319 5.721225 AGAGAGAGAGAGAGAGAGAGGTAT 58.279 45.833 0.00 0.00 0.00 2.73
319 320 5.103473 AGAGAGAGAGAGAGAGAGAGAGGTA 60.103 48.000 0.00 0.00 0.00 3.08
320 321 3.964031 GAGAGAGAGAGAGAGAGAGAGGT 59.036 52.174 0.00 0.00 0.00 3.85
321 322 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
322 323 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
323 324 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
324 325 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
325 326 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
326 327 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
327 328 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
328 329 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
329 330 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
330 331 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
331 332 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
332 333 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
333 334 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
334 335 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
335 336 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
336 337 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
337 338 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
338 339 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
339 340 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
340 341 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
341 342 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
342 343 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
343 344 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
344 345 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
345 346 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
346 347 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
347 348 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
348 349 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
349 350 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
350 351 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
351 352 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
352 353 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
353 354 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
354 355 3.005261 CCGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
355 356 2.959030 CCGAGAGAGAGAGAGAGAGAGA 59.041 54.545 0.00 0.00 0.00 3.10
356 357 2.695666 ACCGAGAGAGAGAGAGAGAGAG 59.304 54.545 0.00 0.00 0.00 3.20
357 358 2.430694 CACCGAGAGAGAGAGAGAGAGA 59.569 54.545 0.00 0.00 0.00 3.10
358 359 2.483714 CCACCGAGAGAGAGAGAGAGAG 60.484 59.091 0.00 0.00 0.00 3.20
359 360 1.484653 CCACCGAGAGAGAGAGAGAGA 59.515 57.143 0.00 0.00 0.00 3.10
360 361 1.953559 CCACCGAGAGAGAGAGAGAG 58.046 60.000 0.00 0.00 0.00 3.20
361 362 0.107410 GCCACCGAGAGAGAGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
362 363 1.436195 CGCCACCGAGAGAGAGAGAG 61.436 65.000 0.00 0.00 36.29 3.20
363 364 1.450491 CGCCACCGAGAGAGAGAGA 60.450 63.158 0.00 0.00 36.29 3.10
364 365 1.747367 ACGCCACCGAGAGAGAGAG 60.747 63.158 0.00 0.00 38.29 3.20
365 366 2.041115 CACGCCACCGAGAGAGAGA 61.041 63.158 0.00 0.00 38.29 3.10
366 367 2.487428 CACGCCACCGAGAGAGAG 59.513 66.667 0.00 0.00 38.29 3.20
367 368 3.062466 CCACGCCACCGAGAGAGA 61.062 66.667 0.00 0.00 38.29 3.10
368 369 4.803426 GCCACGCCACCGAGAGAG 62.803 72.222 0.00 0.00 38.29 3.20
424 425 7.551585 CCTCTTCTAGTAAGTGTCACATCAAT 58.448 38.462 5.62 0.00 0.00 2.57
442 443 4.906618 TCTAACGAAATTTGGCCTCTTCT 58.093 39.130 3.32 0.00 0.00 2.85
448 449 4.173256 CCAACATCTAACGAAATTTGGCC 58.827 43.478 0.00 0.00 0.00 5.36
449 450 3.612423 GCCAACATCTAACGAAATTTGGC 59.388 43.478 6.68 6.68 0.00 4.52
459 464 4.214758 ACCAAAACTACGCCAACATCTAAC 59.785 41.667 0.00 0.00 0.00 2.34
466 471 1.265905 CTCCACCAAAACTACGCCAAC 59.734 52.381 0.00 0.00 0.00 3.77
472 477 3.955551 TCCCAAAACTCCACCAAAACTAC 59.044 43.478 0.00 0.00 0.00 2.73
474 479 2.764010 GTCCCAAAACTCCACCAAAACT 59.236 45.455 0.00 0.00 0.00 2.66
478 483 0.256464 ACGTCCCAAAACTCCACCAA 59.744 50.000 0.00 0.00 0.00 3.67
479 484 0.179040 GACGTCCCAAAACTCCACCA 60.179 55.000 3.51 0.00 0.00 4.17
483 488 2.845363 TTAGGACGTCCCAAAACTCC 57.155 50.000 30.82 3.19 37.41 3.85
502 507 8.612145 AGTAGACTTACTTCCCCACAAAAATAT 58.388 33.333 0.00 0.00 36.75 1.28
515 520 8.660373 CAAAACATGATCCAGTAGACTTACTTC 58.340 37.037 0.00 0.00 38.05 3.01
555 560 0.937304 ACGCTACGCTAATGCATTGG 59.063 50.000 22.27 19.94 39.64 3.16
556 561 2.096909 GGTACGCTACGCTAATGCATTG 60.097 50.000 22.27 12.54 39.64 2.82
557 562 2.132762 GGTACGCTACGCTAATGCATT 58.867 47.619 17.56 17.56 39.64 3.56
558 563 1.604693 GGGTACGCTACGCTAATGCAT 60.605 52.381 2.05 0.00 39.64 3.96
592 1536 2.677836 GCAACACTCAACTCTGTTCACA 59.322 45.455 0.00 0.00 0.00 3.58
593 1537 2.677836 TGCAACACTCAACTCTGTTCAC 59.322 45.455 0.00 0.00 0.00 3.18
596 1540 2.017049 GGTGCAACACTCAACTCTGTT 58.983 47.619 0.00 0.00 39.98 3.16
615 1559 3.762247 CGCCAACAAGCCCCATGG 61.762 66.667 4.14 4.14 36.00 3.66
651 1805 4.133796 GCACCTGATTTGGGCCGC 62.134 66.667 0.00 0.00 0.00 6.53
672 1826 1.505807 CGTTGGATGCAATGCGGAA 59.494 52.632 6.21 0.00 37.56 4.30
677 1831 1.331756 GTAGAGCCGTTGGATGCAATG 59.668 52.381 11.93 11.93 0.00 2.82
678 1832 1.668419 GTAGAGCCGTTGGATGCAAT 58.332 50.000 1.94 0.00 0.00 3.56
682 1836 1.227263 CCCGTAGAGCCGTTGGATG 60.227 63.158 0.00 0.00 0.00 3.51
683 1837 1.684734 ACCCGTAGAGCCGTTGGAT 60.685 57.895 0.00 0.00 0.00 3.41
684 1838 2.283388 ACCCGTAGAGCCGTTGGA 60.283 61.111 0.00 0.00 0.00 3.53
685 1839 2.125673 CACCCGTAGAGCCGTTGG 60.126 66.667 0.00 0.00 0.00 3.77
686 1840 2.813908 GCACCCGTAGAGCCGTTG 60.814 66.667 0.00 0.00 0.00 4.10
691 1845 1.883084 CGATTGGCACCCGTAGAGC 60.883 63.158 0.00 0.00 0.00 4.09
692 1846 0.174845 TTCGATTGGCACCCGTAGAG 59.825 55.000 7.44 0.00 0.00 2.43
693 1847 0.828022 ATTCGATTGGCACCCGTAGA 59.172 50.000 7.44 0.00 0.00 2.59
694 1848 1.217882 GATTCGATTGGCACCCGTAG 58.782 55.000 7.44 0.00 0.00 3.51
695 1849 0.179067 GGATTCGATTGGCACCCGTA 60.179 55.000 7.44 0.00 0.00 4.02
696 1850 1.451387 GGATTCGATTGGCACCCGT 60.451 57.895 7.44 0.00 0.00 5.28
697 1851 0.819259 ATGGATTCGATTGGCACCCG 60.819 55.000 0.00 0.00 0.00 5.28
698 1852 0.670162 CATGGATTCGATTGGCACCC 59.330 55.000 0.00 0.00 0.00 4.61
699 1853 0.670162 CCATGGATTCGATTGGCACC 59.330 55.000 5.56 0.00 0.00 5.01
700 1854 0.670162 CCCATGGATTCGATTGGCAC 59.330 55.000 15.22 0.00 0.00 5.01
701 1855 0.258484 ACCCATGGATTCGATTGGCA 59.742 50.000 15.22 0.00 0.00 4.92
702 1856 0.954452 GACCCATGGATTCGATTGGC 59.046 55.000 15.22 0.00 0.00 4.52
703 1857 2.346766 TGACCCATGGATTCGATTGG 57.653 50.000 15.22 0.00 0.00 3.16
704 1858 4.717233 TTTTGACCCATGGATTCGATTG 57.283 40.909 15.22 0.00 0.00 2.67
734 1888 3.248602 AGAAAAATATGATCCGCACTCGC 59.751 43.478 0.00 0.00 0.00 5.03
735 1889 5.409643 AAGAAAAATATGATCCGCACTCG 57.590 39.130 0.00 0.00 0.00 4.18
736 1890 8.017946 GGAATAAGAAAAATATGATCCGCACTC 58.982 37.037 0.00 0.00 0.00 3.51
737 1891 7.721399 AGGAATAAGAAAAATATGATCCGCACT 59.279 33.333 0.00 0.00 0.00 4.40
738 1892 7.875971 AGGAATAAGAAAAATATGATCCGCAC 58.124 34.615 0.00 0.00 0.00 5.34
739 1893 8.463930 AAGGAATAAGAAAAATATGATCCGCA 57.536 30.769 0.00 0.00 0.00 5.69
740 1894 9.399403 GAAAGGAATAAGAAAAATATGATCCGC 57.601 33.333 0.00 0.00 0.00 5.54
809 1963 9.880157 GTTCTCCTACAACATTGGTATTACTAA 57.120 33.333 0.00 0.00 0.00 2.24
812 1966 8.732746 ATGTTCTCCTACAACATTGGTATTAC 57.267 34.615 0.00 0.00 40.83 1.89
822 1976 1.066430 GCGGGATGTTCTCCTACAACA 60.066 52.381 0.00 0.00 44.28 3.33
823 1977 1.653151 GCGGGATGTTCTCCTACAAC 58.347 55.000 0.00 0.00 44.28 3.32
824 1978 0.539986 GGCGGGATGTTCTCCTACAA 59.460 55.000 0.00 0.00 44.28 2.41
832 1986 4.090588 TCGGTGGGCGGGATGTTC 62.091 66.667 0.00 0.00 0.00 3.18
863 2017 5.187576 ACATTGTCCACATAAATGAAAGGGG 59.812 40.000 0.00 0.00 35.67 4.79
870 2024 9.859427 ATTTTAGTGACATTGTCCACATAAATG 57.141 29.630 14.05 0.00 37.33 2.32
872 2026 9.295825 AGATTTTAGTGACATTGTCCACATAAA 57.704 29.630 14.05 13.96 0.00 1.40
886 2040 6.526566 AAGTGTGTCGAAGATTTTAGTGAC 57.473 37.500 0.00 0.00 40.67 3.67
892 2048 6.540914 TGTAGGAAAAGTGTGTCGAAGATTTT 59.459 34.615 0.00 0.00 40.67 1.82
897 2053 5.230942 AGATGTAGGAAAAGTGTGTCGAAG 58.769 41.667 0.00 0.00 0.00 3.79
900 2056 5.696724 AGAAAGATGTAGGAAAAGTGTGTCG 59.303 40.000 0.00 0.00 0.00 4.35
941 2591 7.348080 TGGTGTATGGCTAGCTGTATATATC 57.652 40.000 15.72 10.12 0.00 1.63
960 2626 4.702131 GCTCAATCCTACTTCAAATGGTGT 59.298 41.667 0.00 0.00 0.00 4.16
970 2636 4.336280 GTTTCCTTGGCTCAATCCTACTT 58.664 43.478 0.00 0.00 0.00 2.24
1011 2677 2.462723 TGCAGTGTGGCTAGTGGTATA 58.537 47.619 0.00 0.00 34.04 1.47
1012 2678 1.275666 TGCAGTGTGGCTAGTGGTAT 58.724 50.000 0.00 0.00 34.04 2.73
1051 2726 0.517755 AGTAGTGAGCACGACACGAG 59.482 55.000 14.65 0.00 42.25 4.18
1147 2825 1.527380 GTTGGTGGAGGTTGCCGAA 60.527 57.895 0.00 0.00 0.00 4.30
1341 3025 2.113433 GCAGCCGTAGAGGAGACGA 61.113 63.158 0.00 0.00 45.00 4.20
1492 3176 1.081277 GTTCCTCCTCCACCCTCCT 59.919 63.158 0.00 0.00 0.00 3.69
1928 3622 5.830000 ATGATATGATTGAATGGGATGCG 57.170 39.130 0.00 0.00 0.00 4.73
1929 3623 6.931838 ACAATGATATGATTGAATGGGATGC 58.068 36.000 20.00 0.00 36.89 3.91
2155 7682 2.189499 GGCCATGACCCATTCGAGC 61.189 63.158 0.00 0.00 0.00 5.03
2179 7706 2.281761 ACTGGCTTGTTGCGGAGG 60.282 61.111 0.00 0.00 44.05 4.30
2363 7890 1.597027 CTTGGACCCTCGCGTGTTT 60.597 57.895 5.77 0.00 0.00 2.83
2672 8199 1.080705 CCCTCTTCCGTGACGTGAC 60.081 63.158 3.64 0.00 0.00 3.67
2783 8310 8.883731 GCACAAATCTAACATGTAATCTACACT 58.116 33.333 0.00 0.00 42.23 3.55
2855 8382 7.174253 ACCAACTCACGTATCAACAACAATAAT 59.826 33.333 0.00 0.00 0.00 1.28
2931 8458 3.244911 CCTCAACAACTTCCTACCCACAT 60.245 47.826 0.00 0.00 0.00 3.21
2974 8501 8.608844 TGTACACACATATTCAACACATGTTA 57.391 30.769 0.00 0.00 36.32 2.41
2977 8504 7.482428 CACATGTACACACATATTCAACACATG 59.518 37.037 0.00 8.81 43.73 3.21
3035 8755 3.784701 AGTCGAGCATGTAACCACTAG 57.215 47.619 0.00 0.00 0.00 2.57
3049 8769 1.336887 CCTACCCACACACAAGTCGAG 60.337 57.143 0.00 0.00 0.00 4.04
3550 9270 3.262420 GGCAAAGCTTCGAATCTGTCTA 58.738 45.455 1.63 0.00 0.00 2.59
3595 9315 3.059597 CCGACCATCAAGATAAACGATGC 60.060 47.826 0.00 0.00 36.12 3.91
3609 9329 3.976701 CTGGCACCACCCGACCATC 62.977 68.421 0.00 0.00 37.83 3.51
3624 9344 1.981495 AGAAACCCTTCTCTCCACTGG 59.019 52.381 0.00 0.00 37.31 4.00
3648 9368 0.560193 CTCCCCTCAGATCTCCTCCA 59.440 60.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.