Multiple sequence alignment - TraesCS7D01G485400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G485400 chr7D 100.000 2810 0 0 1 2810 595670137 595667328 0.000000e+00 5190
1 TraesCS7D01G485400 chr7D 86.644 599 57 15 1016 1605 595587146 595586562 2.360000e-180 641
2 TraesCS7D01G485400 chr7D 82.467 673 73 24 1095 1733 595514270 595513609 5.290000e-152 547
3 TraesCS7D01G485400 chr7A 87.926 2170 143 37 670 2810 688666357 688664278 0.000000e+00 2446
4 TraesCS7D01G485400 chr7A 88.906 640 58 9 1 630 688666994 688666358 0.000000e+00 776
5 TraesCS7D01G485400 chr7A 86.040 702 71 15 1041 1733 688360481 688359798 0.000000e+00 728
6 TraesCS7D01G485400 chr7A 85.379 725 78 15 1108 1825 688652478 688651775 0.000000e+00 726
7 TraesCS7D01G485400 chr7A 83.776 678 78 20 945 1605 688462870 688462208 5.140000e-172 614
8 TraesCS7D01G485400 chr7A 85.560 464 50 10 1206 1665 688356407 688355957 1.180000e-128 470
9 TraesCS7D01G485400 chr7B 91.693 951 54 10 1 945 673222660 673221729 0.000000e+00 1295
10 TraesCS7D01G485400 chr7B 91.525 885 42 11 945 1813 673221701 673220834 0.000000e+00 1188
11 TraesCS7D01G485400 chr7B 84.545 990 77 36 1834 2810 673220738 673219812 0.000000e+00 911
12 TraesCS7D01G485400 chr7B 84.211 703 68 24 940 1612 672861073 672860384 0.000000e+00 643
13 TraesCS7D01G485400 chr7B 80.922 781 105 28 968 1733 672780112 672779361 6.750000e-161 577


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G485400 chr7D 595667328 595670137 2809 True 5190.000000 5190 100.000000 1 2810 1 chr7D.!!$R3 2809
1 TraesCS7D01G485400 chr7D 595586562 595587146 584 True 641.000000 641 86.644000 1016 1605 1 chr7D.!!$R2 589
2 TraesCS7D01G485400 chr7D 595513609 595514270 661 True 547.000000 547 82.467000 1095 1733 1 chr7D.!!$R1 638
3 TraesCS7D01G485400 chr7A 688664278 688666994 2716 True 1611.000000 2446 88.416000 1 2810 2 chr7A.!!$R4 2809
4 TraesCS7D01G485400 chr7A 688651775 688652478 703 True 726.000000 726 85.379000 1108 1825 1 chr7A.!!$R2 717
5 TraesCS7D01G485400 chr7A 688462208 688462870 662 True 614.000000 614 83.776000 945 1605 1 chr7A.!!$R1 660
6 TraesCS7D01G485400 chr7A 688355957 688360481 4524 True 599.000000 728 85.800000 1041 1733 2 chr7A.!!$R3 692
7 TraesCS7D01G485400 chr7B 673219812 673222660 2848 True 1131.333333 1295 89.254333 1 2810 3 chr7B.!!$R3 2809
8 TraesCS7D01G485400 chr7B 672860384 672861073 689 True 643.000000 643 84.211000 940 1612 1 chr7B.!!$R2 672
9 TraesCS7D01G485400 chr7B 672779361 672780112 751 True 577.000000 577 80.922000 968 1733 1 chr7B.!!$R1 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 876 0.039527 CGGTTTCGCCTCAAAAAGGG 60.04 55.0 0.0 0.0 46.32 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2563 6161 0.033366 CATCCACACCACACAGTCGA 59.967 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.813446 AAAGTAGGATCGTTAATCTTTTATCGT 57.187 29.630 0.00 0.00 33.97 3.73
108 109 9.390795 CATCTATTCAATAGAATTTTCGCTTGG 57.609 33.333 11.24 0.00 44.41 3.61
138 139 4.684242 GCACCAACTAGTTTATGCAAAACC 59.316 41.667 25.68 5.16 33.40 3.27
184 185 4.697352 ACACACTCAATAATCCTTGCTGTC 59.303 41.667 0.00 0.00 0.00 3.51
223 224 1.097547 CCATTCCCTCCACATCGTGC 61.098 60.000 0.00 0.00 31.34 5.34
315 326 3.371168 CCCCATAATTGCGTTCATTTCG 58.629 45.455 0.00 0.00 0.00 3.46
327 338 3.181514 CGTTCATTTCGACCATTACCCAC 60.182 47.826 0.00 0.00 0.00 4.61
344 355 5.410355 ACCCACGTGACTTAAAGCTAATA 57.590 39.130 19.30 0.00 0.00 0.98
352 363 6.421202 CGTGACTTAAAGCTAATAGGTCATCC 59.579 42.308 20.23 11.83 40.19 3.51
408 419 2.354103 CGATCACAGAAAGGAGAGCCAA 60.354 50.000 0.00 0.00 36.29 4.52
418 429 0.895559 GGAGAGCCAAAACCACAGGG 60.896 60.000 0.00 0.00 41.29 4.45
590 601 5.009610 GCACCTCACAATTCTAAACAAAGGA 59.990 40.000 0.00 0.00 0.00 3.36
597 608 7.123547 TCACAATTCTAAACAAAGGAAGTGGTT 59.876 33.333 0.00 0.00 38.71 3.67
617 628 4.174762 GTTTCGAGTACCAGGATCTTCAC 58.825 47.826 0.00 0.00 0.00 3.18
678 689 0.454600 CATGAGCTCACCATGGTTGC 59.545 55.000 20.97 24.58 38.12 4.17
702 713 4.214971 GCACACAATCTAGAGGCAATATGG 59.785 45.833 0.00 0.00 0.00 2.74
792 803 3.369921 GCTTGTCCAAAGCCCTGG 58.630 61.111 0.00 0.00 37.30 4.45
795 806 1.821666 GCTTGTCCAAAGCCCTGGTTA 60.822 52.381 0.00 0.00 37.74 2.85
801 812 4.264172 TGTCCAAAGCCCTGGTTATACAAT 60.264 41.667 1.80 0.00 37.74 2.71
861 876 0.039527 CGGTTTCGCCTCAAAAAGGG 60.040 55.000 0.00 0.00 46.32 3.95
862 877 1.037493 GGTTTCGCCTCAAAAAGGGT 58.963 50.000 0.00 0.00 46.32 4.34
863 878 1.269569 GGTTTCGCCTCAAAAAGGGTG 60.270 52.381 0.00 0.00 46.32 4.61
865 880 0.106419 TTCGCCTCAAAAAGGGTGGT 60.106 50.000 0.00 0.00 46.32 4.16
866 881 0.766131 TCGCCTCAAAAAGGGTGGTA 59.234 50.000 0.00 0.00 46.32 3.25
867 882 1.353022 TCGCCTCAAAAAGGGTGGTAT 59.647 47.619 0.00 0.00 46.32 2.73
868 883 1.743394 CGCCTCAAAAAGGGTGGTATC 59.257 52.381 0.00 0.00 46.32 2.24
869 884 2.618045 CGCCTCAAAAAGGGTGGTATCT 60.618 50.000 0.00 0.00 46.32 1.98
870 885 3.370103 CGCCTCAAAAAGGGTGGTATCTA 60.370 47.826 0.00 0.00 46.32 1.98
871 886 3.945921 GCCTCAAAAAGGGTGGTATCTAC 59.054 47.826 0.00 0.00 46.32 2.59
1012 1068 2.203998 CCTCCACACCACCCCTCT 60.204 66.667 0.00 0.00 0.00 3.69
1014 1070 3.249189 TCCACACCACCCCTCTGC 61.249 66.667 0.00 0.00 0.00 4.26
1067 1152 1.199327 CAGCAAACTCATCAGGTGCAG 59.801 52.381 0.00 0.00 37.29 4.41
1108 1200 1.453015 GCCCACAGACACCAACACA 60.453 57.895 0.00 0.00 0.00 3.72
1109 1201 1.034838 GCCCACAGACACCAACACAA 61.035 55.000 0.00 0.00 0.00 3.33
1110 1202 1.468985 CCCACAGACACCAACACAAA 58.531 50.000 0.00 0.00 0.00 2.83
1111 1203 1.134175 CCCACAGACACCAACACAAAC 59.866 52.381 0.00 0.00 0.00 2.93
1705 1842 2.125229 ATGAGAGCAGCAGCACGG 60.125 61.111 3.17 0.00 45.49 4.94
1851 5368 1.598962 CTACCCGGATAGTCGCGGA 60.599 63.158 6.13 0.00 33.84 5.54
1885 5402 4.874977 GCGGAGTCCTAGCGTGGC 62.875 72.222 7.77 0.00 0.00 5.01
1950 5474 4.880537 CGGCTCGAGCGCAAGGAT 62.881 66.667 29.81 0.00 43.26 3.24
2068 5661 3.578272 GTGGCGACGGTGCACAAA 61.578 61.111 20.43 0.00 36.28 2.83
2069 5662 3.276091 TGGCGACGGTGCACAAAG 61.276 61.111 20.43 11.75 36.28 2.77
2071 5664 4.683334 GCGACGGTGCACAAAGGC 62.683 66.667 20.43 12.52 34.15 4.35
2072 5665 4.368808 CGACGGTGCACAAAGGCG 62.369 66.667 20.43 18.76 36.28 5.52
2076 5669 3.910490 GGTGCACAAAGGCGGCAA 61.910 61.111 20.43 0.00 39.57 4.52
2077 5670 2.339712 GTGCACAAAGGCGGCAAT 59.660 55.556 13.17 0.00 39.57 3.56
2098 5691 0.941463 GCCAGTGACACAGACGACAG 60.941 60.000 8.59 0.00 0.00 3.51
2183 5776 2.156051 GAAGTGGCCTTCCGACGACT 62.156 60.000 3.32 0.00 41.09 4.18
2232 5825 0.531532 GTATCTGCAGGCATCGTGCT 60.532 55.000 15.13 0.00 44.26 4.40
2241 5834 2.334307 GCATCGTGCTATGCCCAAT 58.666 52.632 7.71 0.00 45.31 3.16
2278 5871 7.060633 CCATTTAGTGCTGTAACACGATTTTTC 59.939 37.037 0.00 0.00 45.45 2.29
2330 5924 2.388890 ATCGTGCTATGCAGAGGCCC 62.389 60.000 10.92 0.00 40.08 5.80
2334 5928 3.554342 CTATGCAGAGGCCCGGCT 61.554 66.667 9.86 0.00 40.13 5.52
2345 5939 1.298667 GCCCGGCTTTCCTTCACTA 59.701 57.895 0.71 0.00 0.00 2.74
2353 5947 2.223377 GCTTTCCTTCACTACGGTTGTG 59.777 50.000 15.16 15.16 36.82 3.33
2367 5961 3.181493 ACGGTTGTGTCACCTCGATATAC 60.181 47.826 13.90 0.00 34.22 1.47
2371 5965 4.380841 TGTGTCACCTCGATATACCAAC 57.619 45.455 0.00 0.00 0.00 3.77
2415 6010 1.538047 AAATCTGCAAGCATGACGGT 58.462 45.000 0.00 0.00 0.00 4.83
2502 6100 3.376935 AAGGGCAGAGACCATCGCG 62.377 63.158 0.00 0.00 29.21 5.87
2514 6112 2.125106 ATCGCGCCAGGAGGTTTC 60.125 61.111 0.00 0.00 37.19 2.78
2524 6122 0.109342 AGGAGGTTTCTGGTGCACTG 59.891 55.000 17.98 10.30 0.00 3.66
2531 6129 4.227300 AGGTTTCTGGTGCACTGGATATTA 59.773 41.667 17.98 0.00 0.00 0.98
2563 6161 3.173965 TCTAGCTTCAAGGTAGTGGCTT 58.826 45.455 20.57 0.00 44.37 4.35
2564 6162 2.481289 AGCTTCAAGGTAGTGGCTTC 57.519 50.000 0.00 0.00 0.00 3.86
2568 6166 1.629043 TCAAGGTAGTGGCTTCGACT 58.371 50.000 0.00 0.00 0.00 4.18
2600 6198 4.038282 TGGATGTTACAGTGTGACTAACGT 59.962 41.667 17.94 9.90 0.00 3.99
2601 6199 4.986659 GGATGTTACAGTGTGACTAACGTT 59.013 41.667 17.94 5.88 0.00 3.99
2681 6279 5.305585 GTGGTGGTGATCTAAACTGAGAAA 58.694 41.667 0.00 0.00 0.00 2.52
2743 6342 4.760715 AGTACGGATGCTACTATCGAATGT 59.239 41.667 0.00 0.00 0.00 2.71
2759 6358 3.492313 GAATGTTCCGTTGTCATCAAGC 58.508 45.455 0.00 0.00 33.97 4.01
2763 6362 2.542020 TCCGTTGTCATCAAGCTGAA 57.458 45.000 0.00 0.00 33.97 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.014518 TCCCACGATAAAAGATTAACGATCCTA 59.985 37.037 5.46 0.00 38.98 2.94
12 13 6.921857 TCTCCCACGATAAAAGATTAACGATC 59.078 38.462 5.46 0.00 38.98 3.69
16 17 7.012959 GGTTCTCCCACGATAAAAGATTAAC 57.987 40.000 0.00 0.00 0.00 2.01
98 99 0.743688 TGCAAAGAGCCAAGCGAAAA 59.256 45.000 0.00 0.00 44.83 2.29
102 103 2.074230 TTGGTGCAAAGAGCCAAGCG 62.074 55.000 1.76 0.00 44.83 4.68
108 109 3.990318 AAACTAGTTGGTGCAAAGAGC 57.010 42.857 9.34 0.00 45.96 4.09
138 139 8.645487 GTGTTTTACATTTACCTCTCGTCTTAG 58.355 37.037 0.00 0.00 0.00 2.18
223 224 3.072915 AGGGGAATTTTTCAAGCCCTTTG 59.927 43.478 0.00 0.00 36.08 2.77
315 326 2.467566 AAGTCACGTGGGTAATGGTC 57.532 50.000 17.00 0.00 0.00 4.02
327 338 6.421202 GGATGACCTATTAGCTTTAAGTCACG 59.579 42.308 8.98 0.00 35.77 4.35
344 355 3.842923 CAGCGAGGCGGATGACCT 61.843 66.667 0.00 0.00 41.41 3.85
352 363 2.705934 ATCCATAGTGCAGCGAGGCG 62.706 60.000 0.00 0.00 36.28 5.52
393 404 2.294512 GTGGTTTTGGCTCTCCTTTCTG 59.705 50.000 0.00 0.00 0.00 3.02
408 419 5.472301 AATATCCTCAATCCCTGTGGTTT 57.528 39.130 0.00 0.00 39.36 3.27
590 601 2.322658 TCCTGGTACTCGAAACCACTT 58.677 47.619 13.85 0.00 42.10 3.16
597 608 3.427573 TGTGAAGATCCTGGTACTCGAA 58.572 45.455 0.00 0.00 0.00 3.71
640 651 1.141254 TGCGTAAACCTTCTCCCAACA 59.859 47.619 0.00 0.00 0.00 3.33
678 689 1.725641 TTGCCTCTAGATTGTGTGCG 58.274 50.000 0.00 0.00 0.00 5.34
806 817 8.527810 CCCCAATGCAACTTTTATAGTAAGAAA 58.472 33.333 0.00 0.00 35.54 2.52
809 820 7.639113 TCCCCAATGCAACTTTTATAGTAAG 57.361 36.000 0.00 0.00 35.54 2.34
810 821 8.602472 AATCCCCAATGCAACTTTTATAGTAA 57.398 30.769 0.00 0.00 35.54 2.24
811 822 8.602472 AAATCCCCAATGCAACTTTTATAGTA 57.398 30.769 0.00 0.00 35.54 1.82
812 823 7.364673 GGAAATCCCCAATGCAACTTTTATAGT 60.365 37.037 0.00 0.00 39.32 2.12
863 878 7.555554 TGTGTACTCTGTTTCTAGGTAGATACC 59.444 40.741 0.43 0.43 46.82 2.73
865 880 7.555554 GGTGTGTACTCTGTTTCTAGGTAGATA 59.444 40.741 0.00 0.00 31.40 1.98
866 881 6.377712 GGTGTGTACTCTGTTTCTAGGTAGAT 59.622 42.308 0.00 0.00 31.40 1.98
867 882 5.709164 GGTGTGTACTCTGTTTCTAGGTAGA 59.291 44.000 0.00 0.00 0.00 2.59
868 883 5.711036 AGGTGTGTACTCTGTTTCTAGGTAG 59.289 44.000 0.00 0.00 0.00 3.18
869 884 5.638133 AGGTGTGTACTCTGTTTCTAGGTA 58.362 41.667 0.00 0.00 0.00 3.08
870 885 4.481072 AGGTGTGTACTCTGTTTCTAGGT 58.519 43.478 0.00 0.00 0.00 3.08
871 886 4.082136 GGAGGTGTGTACTCTGTTTCTAGG 60.082 50.000 0.00 0.00 35.34 3.02
1012 1068 0.746204 TTTTCTCCTGTGTGTGCGCA 60.746 50.000 5.66 5.66 0.00 6.09
1014 1070 1.400142 TGTTTTTCTCCTGTGTGTGCG 59.600 47.619 0.00 0.00 0.00 5.34
1067 1152 1.065600 CGTAGCAGAGCAGAGGAGC 59.934 63.158 0.00 0.00 0.00 4.70
1108 1200 1.603455 CGGGCCTCATGGTGTGTTT 60.603 57.895 0.84 0.00 35.27 2.83
1109 1201 2.034066 CGGGCCTCATGGTGTGTT 59.966 61.111 0.84 0.00 35.27 3.32
1110 1202 4.033776 CCGGGCCTCATGGTGTGT 62.034 66.667 0.84 0.00 35.27 3.72
1111 1203 3.687321 CTCCGGGCCTCATGGTGTG 62.687 68.421 0.84 0.00 35.27 3.82
1406 1504 1.079127 ACGTGCTCCTGGAAATCCG 60.079 57.895 0.00 0.65 39.43 4.18
1485 1583 3.308014 GAGCTCAACCTCGGCTGCT 62.308 63.158 9.40 0.00 36.37 4.24
1545 1649 0.323087 TCTTCTCCGGTCCATCGACA 60.323 55.000 0.00 0.00 41.13 4.35
1590 1697 2.262915 CCTCCGAGCTGCGAGTTT 59.737 61.111 0.00 0.00 44.57 2.66
1705 1842 3.182312 GCTTTCTTGGAGCTCCGC 58.818 61.111 27.43 19.11 39.43 5.54
1874 5391 2.351244 CCAGTGAGCCACGCTAGGA 61.351 63.158 0.00 0.00 39.88 2.94
1914 5431 4.077184 TCGGCGCCGTCCTGAAAT 62.077 61.111 44.16 0.00 40.74 2.17
1941 5465 1.146930 TCCTCATCCATCCTTGCGC 59.853 57.895 0.00 0.00 0.00 6.09
1947 5471 2.029666 CGCGGTCCTCATCCATCC 59.970 66.667 0.00 0.00 0.00 3.51
1949 5473 4.241555 GCCGCGGTCCTCATCCAT 62.242 66.667 28.70 0.00 0.00 3.41
2063 5656 2.432972 GCCATTGCCGCCTTTGTG 60.433 61.111 0.00 0.00 0.00 3.33
2075 5668 0.603707 CGTCTGTGTCACTGGCCATT 60.604 55.000 5.51 0.00 0.00 3.16
2076 5669 1.004560 CGTCTGTGTCACTGGCCAT 60.005 57.895 5.51 0.00 0.00 4.40
2077 5670 2.131067 TCGTCTGTGTCACTGGCCA 61.131 57.895 4.71 4.71 0.00 5.36
2098 5691 2.579787 CTCACGCGATCCGACCAC 60.580 66.667 15.93 0.00 41.02 4.16
2110 5703 1.227380 GGCATGACTAGCCCTCACG 60.227 63.158 0.00 0.00 46.50 4.35
2183 5776 2.550855 GCCTCTTGGTCATCTTGTCACA 60.551 50.000 0.00 0.00 35.27 3.58
2278 5871 2.422127 ACACGTCCAACACCTCAAAAAG 59.578 45.455 0.00 0.00 0.00 2.27
2330 5924 0.037605 ACCGTAGTGAAGGAAAGCCG 60.038 55.000 0.00 0.00 39.96 5.52
2334 5928 3.118702 TGACACAACCGTAGTGAAGGAAA 60.119 43.478 6.19 0.00 40.16 3.13
2345 5939 1.250328 TATCGAGGTGACACAACCGT 58.750 50.000 8.08 2.05 45.53 4.83
2353 5947 4.338682 ACTCAGTTGGTATATCGAGGTGAC 59.661 45.833 0.00 0.00 0.00 3.67
2367 5961 6.402550 CGATAAAGGACATTTCACTCAGTTGG 60.403 42.308 0.00 0.00 32.01 3.77
2371 5965 6.968131 TTCGATAAAGGACATTTCACTCAG 57.032 37.500 0.00 0.00 32.01 3.35
2415 6010 0.108992 GATACCGCAGACGAACACCA 60.109 55.000 0.00 0.00 43.93 4.17
2473 6071 0.106268 TCTGCCCTTGCACCAGAAAA 60.106 50.000 0.00 0.00 44.23 2.29
2474 6072 0.538057 CTCTGCCCTTGCACCAGAAA 60.538 55.000 6.90 0.00 44.23 2.52
2475 6073 1.073722 CTCTGCCCTTGCACCAGAA 59.926 57.895 6.90 0.00 44.23 3.02
2492 6090 3.842923 CTCCTGGCGCGATGGTCT 61.843 66.667 12.10 0.00 0.00 3.85
2504 6102 0.109342 AGTGCACCAGAAACCTCCTG 59.891 55.000 14.63 0.00 0.00 3.86
2514 6112 2.806745 CGGGTAATATCCAGTGCACCAG 60.807 54.545 14.63 6.57 0.00 4.00
2524 6122 1.549170 AGATGCCGACGGGTAATATCC 59.451 52.381 17.22 0.00 34.97 2.59
2531 6129 2.017559 GAAGCTAGATGCCGACGGGT 62.018 60.000 17.22 0.00 44.23 5.28
2563 6161 0.033366 CATCCACACCACACAGTCGA 59.967 55.000 0.00 0.00 0.00 4.20
2564 6162 0.249868 ACATCCACACCACACAGTCG 60.250 55.000 0.00 0.00 0.00 4.18
2568 6166 2.171659 ACTGTAACATCCACACCACACA 59.828 45.455 0.00 0.00 0.00 3.72
2600 6198 0.180171 CCACTGTCACTCCACACCAA 59.820 55.000 0.00 0.00 0.00 3.67
2601 6199 1.829456 CCACTGTCACTCCACACCA 59.171 57.895 0.00 0.00 0.00 4.17
2648 6246 3.548484 ACCACCACGGCCGTTACA 61.548 61.111 32.11 0.00 39.03 2.41
2681 6279 4.039730 AGGCACTATTACATCTGCGAGATT 59.960 41.667 0.00 0.00 36.02 2.40
2696 6294 3.319405 CACTCGAGGACATAAGGCACTAT 59.681 47.826 18.41 0.00 38.49 2.12
2743 6342 2.542020 TCAGCTTGATGACAACGGAA 57.458 45.000 0.00 0.00 32.27 4.30
2759 6358 0.950836 TGTTGCGGTGTTCCATTCAG 59.049 50.000 0.00 0.00 0.00 3.02
2763 6362 1.269448 GAACATGTTGCGGTGTTCCAT 59.731 47.619 17.58 0.00 45.20 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.