Multiple sequence alignment - TraesCS7D01G484900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G484900 chr7D 100.000 3326 0 0 1 3326 595329925 595326600 0.000000e+00 6143.0
1 TraesCS7D01G484900 chr7A 92.478 2353 127 27 996 3326 688314253 688311929 0.000000e+00 3319.0
2 TraesCS7D01G484900 chr7A 93.590 936 49 9 5 936 688315291 688314363 0.000000e+00 1386.0
3 TraesCS7D01G484900 chr7A 100.000 32 0 0 494 525 418672392 418672361 3.580000e-05 60.2
4 TraesCS7D01G484900 chr7B 93.694 2109 86 15 598 2667 672765902 672763802 0.000000e+00 3114.0
5 TraesCS7D01G484900 chr7B 91.558 308 20 6 3022 3326 672763497 672763193 1.430000e-113 420.0
6 TraesCS7D01G484900 chr7B 88.846 260 26 3 2783 3041 672763802 672763545 1.930000e-82 316.0
7 TraesCS7D01G484900 chr7B 86.170 188 24 2 289 476 705325565 705325380 5.630000e-48 202.0
8 TraesCS7D01G484900 chr2D 85.641 195 25 3 284 476 52032002 52032195 5.630000e-48 202.0
9 TraesCS7D01G484900 chr2D 85.714 189 25 2 284 471 1612205 1612392 7.280000e-47 198.0
10 TraesCS7D01G484900 chr6B 85.204 196 24 5 284 476 234676156 234676349 2.620000e-46 196.0
11 TraesCS7D01G484900 chr6B 89.130 46 5 0 480 525 24889228 24889183 1.290000e-04 58.4
12 TraesCS7D01G484900 chr5B 85.052 194 27 2 284 476 626351935 626351743 2.620000e-46 196.0
13 TraesCS7D01G484900 chr5B 92.727 55 2 2 1160 1213 504833456 504833403 9.890000e-11 78.7
14 TraesCS7D01G484900 chr5B 90.698 43 4 0 1537 1579 373216997 373216955 1.290000e-04 58.4
15 TraesCS7D01G484900 chr1D 85.128 195 26 3 284 476 375256779 375256972 2.620000e-46 196.0
16 TraesCS7D01G484900 chr1B 85.052 194 27 2 284 476 687274978 687274786 2.620000e-46 196.0
17 TraesCS7D01G484900 chr4D 84.974 193 27 2 284 476 464368769 464368579 9.420000e-46 195.0
18 TraesCS7D01G484900 chr5A 90.909 55 3 2 1160 1213 531083355 531083302 4.600000e-09 73.1
19 TraesCS7D01G484900 chr2B 95.556 45 2 0 481 525 449945180 449945136 4.600000e-09 73.1
20 TraesCS7D01G484900 chr2A 88.679 53 6 0 472 524 173415022 173415074 7.700000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G484900 chr7D 595326600 595329925 3325 True 6143.000000 6143 100.000 1 3326 1 chr7D.!!$R1 3325
1 TraesCS7D01G484900 chr7A 688311929 688315291 3362 True 2352.500000 3319 93.034 5 3326 2 chr7A.!!$R2 3321
2 TraesCS7D01G484900 chr7B 672763193 672765902 2709 True 1283.333333 3114 91.366 598 3326 3 chr7B.!!$R2 2728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 183 0.034337 TCTCGGAAAGGGGAAACACG 59.966 55.000 0.0 0.0 40.46 4.49 F
498 500 0.472471 AAGGCGGGAGTGTTCTTTGA 59.528 50.000 0.0 0.0 0.00 2.69 F
980 1050 1.075970 AGGCAGAGCAGATACCCGA 60.076 57.895 0.0 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1158 1228 0.793250 GCTTGTTCTCCTCGCTGAAC 59.207 55.000 0.0 0.0 41.87 3.18 R
1740 1810 1.132643 ACGAGTTCCACGAGCAGTATC 59.867 52.381 0.0 0.0 34.70 2.24 R
2947 3052 0.741221 GGCAACCATGAGTCGGTCTC 60.741 60.000 0.0 0.0 43.03 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 1.781025 TTTGTTCCGCAAGAGGCACG 61.781 55.000 0.00 0.00 45.17 5.34
119 120 2.729156 GCAAGAGGCACGCATTTACTTC 60.729 50.000 0.00 0.00 43.97 3.01
125 126 2.677836 GGCACGCATTTACTTCTCATGA 59.322 45.455 0.00 0.00 0.00 3.07
141 142 5.451908 TCTCATGAAGCACGAATTTGTTTC 58.548 37.500 0.00 0.00 37.26 2.78
145 146 0.039527 AGCACGAATTTGTTTCCGCC 60.040 50.000 0.00 0.00 32.29 6.13
181 183 0.034337 TCTCGGAAAGGGGAAACACG 59.966 55.000 0.00 0.00 40.46 4.49
186 188 1.335810 GGAAAGGGGAAACACGTGTTC 59.664 52.381 32.36 23.65 40.46 3.18
188 190 2.430248 AAGGGGAAACACGTGTTCTT 57.570 45.000 32.36 25.91 40.46 2.52
190 192 3.121738 AGGGGAAACACGTGTTCTTAG 57.878 47.619 32.36 0.00 40.46 2.18
200 202 5.057149 ACACGTGTTCTTAGATTTGCTTCT 58.943 37.500 17.22 0.00 0.00 2.85
270 272 1.618837 GGAAAGGGGAAAAAGGTGCTC 59.381 52.381 0.00 0.00 0.00 4.26
288 290 1.339929 CTCCTGGTTTGGGTTTTTCCG 59.660 52.381 0.00 0.00 37.00 4.30
400 402 1.059264 GTTTTGAAGATCTCGACGCGG 59.941 52.381 12.47 0.00 0.00 6.46
423 425 2.686816 CCCGACGGCGAAAATGCTT 61.687 57.895 15.16 0.00 40.82 3.91
437 439 6.307155 CGAAAATGCTTCAAGATTTAGTCGT 58.693 36.000 0.00 0.00 0.00 4.34
498 500 0.472471 AAGGCGGGAGTGTTCTTTGA 59.528 50.000 0.00 0.00 0.00 2.69
502 504 2.218603 GCGGGAGTGTTCTTTGAAAGA 58.781 47.619 3.02 3.02 35.26 2.52
518 520 9.712305 TCTTTGAAAGAAGTACTCCTCAATTAG 57.288 33.333 4.94 0.00 33.45 1.73
534 536 6.881065 CCTCAATTAGTGATTTGGAAGAGACA 59.119 38.462 0.00 0.00 35.07 3.41
536 538 7.679783 TCAATTAGTGATTTGGAAGAGACAGA 58.320 34.615 0.00 0.00 0.00 3.41
577 579 2.603075 TTTAACTTCATGCTGGGCCT 57.397 45.000 4.53 0.00 0.00 5.19
604 606 3.127533 CACCAGCGTTAGCCAGGC 61.128 66.667 1.84 1.84 46.67 4.85
613 615 3.060614 TTAGCCAGGCCAGCCCATC 62.061 63.158 8.22 0.00 36.58 3.51
715 718 3.261951 ACGCTGACACACACACGC 61.262 61.111 0.00 0.00 0.00 5.34
980 1050 1.075970 AGGCAGAGCAGATACCCGA 60.076 57.895 0.00 0.00 0.00 5.14
1551 1621 1.596203 CAGCATCATCCACCGCGAT 60.596 57.895 8.23 0.00 0.00 4.58
1713 1783 1.379916 CATGTGGGGCAAGGTCTCA 59.620 57.895 0.00 0.00 0.00 3.27
1740 1810 1.800315 CGACGTGTACAGCTTCGGG 60.800 63.158 11.21 0.00 0.00 5.14
1743 1813 1.402968 GACGTGTACAGCTTCGGGATA 59.597 52.381 0.00 0.00 0.00 2.59
1752 1822 0.872021 GCTTCGGGATACTGCTCGTG 60.872 60.000 0.00 0.00 45.18 4.35
1758 1828 1.202428 GGGATACTGCTCGTGGAACTC 60.202 57.143 0.00 0.00 31.75 3.01
1761 1831 0.520404 TACTGCTCGTGGAACTCGTC 59.480 55.000 0.00 0.00 46.06 4.20
1764 1834 1.153997 GCTCGTGGAACTCGTCTCC 60.154 63.158 0.00 0.00 46.06 3.71
2238 2308 0.392193 AGAGCAGCATGAACTTCGGG 60.392 55.000 0.00 0.00 39.69 5.14
2330 2400 3.579709 ACGGCGTCAAGATATGATCATC 58.420 45.455 12.53 0.00 40.97 2.92
2332 2402 3.856521 CGGCGTCAAGATATGATCATCTC 59.143 47.826 12.53 12.26 40.97 2.75
2336 2407 6.033341 GCGTCAAGATATGATCATCTCCTAC 58.967 44.000 12.53 9.18 40.97 3.18
2400 2472 6.892658 TGATGTGTAAACCTGTGCTTAATT 57.107 33.333 0.00 0.00 0.00 1.40
2401 2473 7.987750 TGATGTGTAAACCTGTGCTTAATTA 57.012 32.000 0.00 0.00 0.00 1.40
2402 2474 8.039603 TGATGTGTAAACCTGTGCTTAATTAG 57.960 34.615 0.00 0.00 0.00 1.73
2545 2629 3.065925 GTCTAGCCCATTTGCTTGATGAC 59.934 47.826 0.92 0.00 43.20 3.06
2596 2699 4.018597 AGCCAGAAGACCAAGAAGATGATT 60.019 41.667 0.00 0.00 0.00 2.57
2597 2700 5.190528 AGCCAGAAGACCAAGAAGATGATTA 59.809 40.000 0.00 0.00 0.00 1.75
2598 2701 5.526846 GCCAGAAGACCAAGAAGATGATTAG 59.473 44.000 0.00 0.00 0.00 1.73
2599 2702 6.631314 GCCAGAAGACCAAGAAGATGATTAGA 60.631 42.308 0.00 0.00 0.00 2.10
2600 2703 6.985645 CCAGAAGACCAAGAAGATGATTAGAG 59.014 42.308 0.00 0.00 0.00 2.43
2601 2704 7.147759 CCAGAAGACCAAGAAGATGATTAGAGA 60.148 40.741 0.00 0.00 0.00 3.10
2602 2705 8.423349 CAGAAGACCAAGAAGATGATTAGAGAT 58.577 37.037 0.00 0.00 0.00 2.75
2642 2745 3.325870 CTGCGTGACCAAAATCTACAGA 58.674 45.455 0.00 0.00 0.00 3.41
2688 2791 1.202330 AGCTGCTTATGCCAGAGTCT 58.798 50.000 0.00 0.00 38.71 3.24
2720 2823 3.073798 TCCTTCTTTTACCTGATGTGCCA 59.926 43.478 0.00 0.00 0.00 4.92
2727 2830 2.559785 CCTGATGTGCCACAGGTTC 58.440 57.895 3.00 0.00 45.82 3.62
2753 2856 3.013921 TCTTGAAACACGAGGCAAAAGT 58.986 40.909 0.00 0.00 0.00 2.66
2775 2878 8.664211 AAGTTTTGCCCGTTTCATTAATTAAA 57.336 26.923 1.21 0.00 0.00 1.52
2782 2885 7.600752 TGCCCGTTTCATTAATTAAAAAGAAGG 59.399 33.333 1.21 6.46 0.00 3.46
2791 2894 4.890158 ATTAAAAAGAAGGTTGCCCAGG 57.110 40.909 0.00 0.00 0.00 4.45
2803 2906 4.709886 AGGTTGCCCAGGTAATTATGAAAC 59.290 41.667 0.00 0.00 0.00 2.78
2809 2912 2.621526 CAGGTAATTATGAAACCCGGGC 59.378 50.000 24.08 4.68 33.53 6.13
2875 2979 4.067016 CCAACCCGTTTCGTCGCG 62.067 66.667 0.00 0.00 0.00 5.87
2908 3013 0.248866 CCAAACTTGCCAACGACACC 60.249 55.000 0.00 0.00 0.00 4.16
2909 3014 0.453793 CAAACTTGCCAACGACACCA 59.546 50.000 0.00 0.00 0.00 4.17
2912 3017 0.678366 ACTTGCCAACGACACCACAA 60.678 50.000 0.00 0.00 0.00 3.33
2914 3019 0.171455 TTGCCAACGACACCACAAAC 59.829 50.000 0.00 0.00 0.00 2.93
2942 3047 1.128200 AGGAGCACACTAACCACACA 58.872 50.000 0.00 0.00 0.00 3.72
2945 3050 1.867233 GAGCACACTAACCACACACAG 59.133 52.381 0.00 0.00 0.00 3.66
2947 3052 1.867233 GCACACTAACCACACACAGAG 59.133 52.381 0.00 0.00 0.00 3.35
3066 3238 3.047857 TCATGCCTGATGTAATCCAGGA 58.952 45.455 12.15 0.00 44.73 3.86
3067 3239 3.144506 CATGCCTGATGTAATCCAGGAC 58.855 50.000 12.15 4.68 44.73 3.85
3095 3269 9.862149 TTGAAATATAAGAACTCCCTTTATCCC 57.138 33.333 0.00 0.00 0.00 3.85
3099 3273 2.206223 AGAACTCCCTTTATCCCCCAC 58.794 52.381 0.00 0.00 0.00 4.61
3100 3274 1.214673 GAACTCCCTTTATCCCCCACC 59.785 57.143 0.00 0.00 0.00 4.61
3102 3276 0.551396 CTCCCTTTATCCCCCACCAC 59.449 60.000 0.00 0.00 0.00 4.16
3106 3281 1.077993 CCTTTATCCCCCACCACCAAA 59.922 52.381 0.00 0.00 0.00 3.28
3190 3365 5.924475 TTGAGCAGAGTAAAGTAACTTGC 57.076 39.130 0.00 0.00 35.53 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.593909 TGAATCTGTTCCTCTTGCAGAAAAA 59.406 36.000 0.00 0.00 41.75 1.94
8 9 5.132502 TGAATCTGTTCCTCTTGCAGAAAA 58.867 37.500 0.00 0.00 41.75 2.29
11 12 4.564782 ATGAATCTGTTCCTCTTGCAGA 57.435 40.909 0.00 0.00 42.49 4.26
16 17 5.641209 CACGAGAAATGAATCTGTTCCTCTT 59.359 40.000 0.00 0.00 33.26 2.85
24 25 2.611292 GCCTCCACGAGAAATGAATCTG 59.389 50.000 0.00 0.00 0.00 2.90
25 26 2.237143 TGCCTCCACGAGAAATGAATCT 59.763 45.455 0.00 0.00 0.00 2.40
96 97 1.643868 TAAATGCGTGCCTCTTGCGG 61.644 55.000 0.00 0.00 45.60 5.69
119 120 4.618489 GGAAACAAATTCGTGCTTCATGAG 59.382 41.667 0.00 0.00 39.05 2.90
125 126 1.601914 GGCGGAAACAAATTCGTGCTT 60.602 47.619 0.00 0.00 39.03 3.91
145 146 4.790962 AGCATGCCCGTGCCTCTG 62.791 66.667 15.66 0.00 46.19 3.35
154 155 1.821332 CCTTTCCGAGAGCATGCCC 60.821 63.158 15.66 1.16 0.00 5.36
155 156 1.821332 CCCTTTCCGAGAGCATGCC 60.821 63.158 15.66 6.03 0.00 4.40
158 159 0.991920 TTTCCCCTTTCCGAGAGCAT 59.008 50.000 0.00 0.00 0.00 3.79
166 168 1.335810 GAACACGTGTTTCCCCTTTCC 59.664 52.381 32.71 14.37 38.56 3.13
188 190 6.239217 TCATGCCTCTTAGAAGCAAATCTA 57.761 37.500 9.71 0.00 40.46 1.98
190 192 5.824904 TTCATGCCTCTTAGAAGCAAATC 57.175 39.130 9.71 0.00 40.46 2.17
270 272 1.404843 TCGGAAAAACCCAAACCAGG 58.595 50.000 0.00 0.00 34.64 4.45
301 303 3.047877 CCCGAACCTGGAACACGC 61.048 66.667 0.00 0.00 0.00 5.34
408 410 1.196808 TCTTGAAGCATTTTCGCCGTC 59.803 47.619 0.00 0.00 0.00 4.79
423 425 9.582431 CTCTTAAACCATACGACTAAATCTTGA 57.418 33.333 0.00 0.00 0.00 3.02
457 459 7.375053 CCTTCCCAGATTCGTTTATTCAAAAA 58.625 34.615 0.00 0.00 0.00 1.94
462 464 3.002348 CGCCTTCCCAGATTCGTTTATTC 59.998 47.826 0.00 0.00 0.00 1.75
502 504 7.918076 TCCAAATCACTAATTGAGGAGTACTT 58.082 34.615 0.00 0.00 37.77 2.24
509 511 6.881065 TGTCTCTTCCAAATCACTAATTGAGG 59.119 38.462 0.00 0.00 37.77 3.86
518 520 6.227298 TCCTATCTGTCTCTTCCAAATCAC 57.773 41.667 0.00 0.00 0.00 3.06
534 536 1.460305 AGCACGGCCCATCCTATCT 60.460 57.895 0.00 0.00 0.00 1.98
536 538 1.762522 CTGAGCACGGCCCATCCTAT 61.763 60.000 0.00 0.00 0.00 2.57
577 579 2.588596 CGCTGGTGCTGTGACACA 60.589 61.111 8.26 8.26 42.55 3.72
601 603 2.074948 CAGTAGGATGGGCTGGCCT 61.075 63.158 21.72 6.86 36.10 5.19
604 606 2.109799 CGCAGTAGGATGGGCTGG 59.890 66.667 0.00 0.00 0.00 4.85
613 615 2.509336 CCGGTCAAGCGCAGTAGG 60.509 66.667 11.47 0.59 0.00 3.18
900 903 2.528127 TTGGAGCGGGTGAAGGGA 60.528 61.111 0.00 0.00 0.00 4.20
1035 1105 4.410400 CCGTGCCCCACCTTCTCC 62.410 72.222 0.00 0.00 0.00 3.71
1158 1228 0.793250 GCTTGTTCTCCTCGCTGAAC 59.207 55.000 0.00 0.00 41.87 3.18
1371 1441 1.520120 CACGATCATGCGCTGGTCT 60.520 57.895 9.73 0.00 32.36 3.85
1551 1621 1.305219 GCACGTTGCTGGCCTTGATA 61.305 55.000 3.32 0.00 40.96 2.15
1740 1810 1.132643 ACGAGTTCCACGAGCAGTATC 59.867 52.381 0.00 0.00 34.70 2.24
1743 1813 1.173444 AGACGAGTTCCACGAGCAGT 61.173 55.000 0.00 0.00 34.70 4.40
1746 1816 1.153997 GGAGACGAGTTCCACGAGC 60.154 63.158 0.00 0.00 34.74 5.03
1776 1846 2.279120 GACGGCAGCCTCTCGATG 60.279 66.667 10.54 0.00 0.00 3.84
1806 1876 2.717044 CGCCCACTCGGTGATGGTA 61.717 63.158 5.71 0.00 45.94 3.25
1882 1952 3.950254 CTCCGCCGCGTCGTAGAT 61.950 66.667 9.28 0.00 40.67 1.98
2148 2218 1.404851 GCCTCCTTCTCGTCTTCTTGG 60.405 57.143 0.00 0.00 0.00 3.61
2149 2219 1.404851 GGCCTCCTTCTCGTCTTCTTG 60.405 57.143 0.00 0.00 0.00 3.02
2154 2224 3.453679 GCGGCCTCCTTCTCGTCT 61.454 66.667 0.00 0.00 0.00 4.18
2330 2400 5.521735 GCATTGTCACACAATAGAGTAGGAG 59.478 44.000 1.60 0.00 46.22 3.69
2332 2402 4.572389 GGCATTGTCACACAATAGAGTAGG 59.428 45.833 1.60 0.00 46.22 3.18
2336 2407 4.005650 ACTGGCATTGTCACACAATAGAG 58.994 43.478 1.60 2.00 46.22 2.43
2383 2455 8.448615 CCAACTACTAATTAAGCACAGGTTTAC 58.551 37.037 0.00 0.00 0.00 2.01
2384 2456 7.608761 CCCAACTACTAATTAAGCACAGGTTTA 59.391 37.037 0.00 0.00 0.00 2.01
2400 2472 3.197766 CACCAGCTTGATCCCAACTACTA 59.802 47.826 0.00 0.00 0.00 1.82
2401 2473 2.026822 CACCAGCTTGATCCCAACTACT 60.027 50.000 0.00 0.00 0.00 2.57
2402 2474 2.027192 TCACCAGCTTGATCCCAACTAC 60.027 50.000 0.00 0.00 0.00 2.73
2490 2571 4.731961 CGCACATTCAAAGATAGCACATTC 59.268 41.667 0.00 0.00 0.00 2.67
2494 2575 2.444351 GCGCACATTCAAAGATAGCAC 58.556 47.619 0.30 0.00 0.00 4.40
2545 2629 5.641209 ACTGTAGATGTTGCTGAAGCTTAAG 59.359 40.000 6.44 6.44 42.66 1.85
2596 2699 8.481314 AGCATGACACAAAATCTCTAATCTCTA 58.519 33.333 0.00 0.00 0.00 2.43
2597 2700 7.280428 CAGCATGACACAAAATCTCTAATCTCT 59.720 37.037 0.00 0.00 39.69 3.10
2598 2701 7.408123 CAGCATGACACAAAATCTCTAATCTC 58.592 38.462 0.00 0.00 39.69 2.75
2599 2702 6.183360 GCAGCATGACACAAAATCTCTAATCT 60.183 38.462 0.00 0.00 39.69 2.40
2600 2703 5.970023 GCAGCATGACACAAAATCTCTAATC 59.030 40.000 0.00 0.00 39.69 1.75
2601 2704 5.448225 CGCAGCATGACACAAAATCTCTAAT 60.448 40.000 0.00 0.00 39.69 1.73
2602 2705 4.142838 CGCAGCATGACACAAAATCTCTAA 60.143 41.667 0.00 0.00 39.69 2.10
2642 2745 1.073025 TGCGGCCACATTGTTCTCT 59.927 52.632 2.24 0.00 0.00 3.10
2688 2791 6.729100 TCAGGTAAAAGAAGGAAGTCTCCATA 59.271 38.462 0.00 0.00 45.24 2.74
2720 2823 4.332819 CGTGTTTCAAGAGAAAGAACCTGT 59.667 41.667 0.00 0.00 43.95 4.00
2727 2830 2.872245 TGCCTCGTGTTTCAAGAGAAAG 59.128 45.455 12.63 0.53 43.95 2.62
2753 2856 9.326413 TCTTTTTAATTAATGAAACGGGCAAAA 57.674 25.926 0.00 0.00 0.00 2.44
2782 2885 4.142026 GGGTTTCATAATTACCTGGGCAAC 60.142 45.833 0.00 0.00 32.46 4.17
2791 2894 2.563702 TCGCCCGGGTTTCATAATTAC 58.436 47.619 24.63 0.00 0.00 1.89
2803 2906 2.175621 GTATCGGTTTTCGCCCGGG 61.176 63.158 19.09 19.09 45.51 5.73
2809 2912 2.478879 GCCCCATTTGTATCGGTTTTCG 60.479 50.000 0.00 0.00 40.90 3.46
2839 2942 2.042686 GCTTGGCCATGTGATGAGTA 57.957 50.000 19.05 0.00 0.00 2.59
2875 2979 2.485795 TTTGGTGCGTCCTTGTGGC 61.486 57.895 0.00 0.00 37.07 5.01
2886 2990 0.869880 GTCGTTGGCAAGTTTGGTGC 60.870 55.000 0.00 0.00 41.45 5.01
2908 3013 2.358582 TGCTCCTGTGATGTTGTTTGTG 59.641 45.455 0.00 0.00 0.00 3.33
2909 3014 2.358898 GTGCTCCTGTGATGTTGTTTGT 59.641 45.455 0.00 0.00 0.00 2.83
2912 3017 1.949525 GTGTGCTCCTGTGATGTTGTT 59.050 47.619 0.00 0.00 0.00 2.83
2914 3019 1.888215 AGTGTGCTCCTGTGATGTTG 58.112 50.000 0.00 0.00 0.00 3.33
2942 3047 1.272203 ACCATGAGTCGGTCTCTCTGT 60.272 52.381 0.00 0.00 43.13 3.41
2945 3050 1.737363 GCAACCATGAGTCGGTCTCTC 60.737 57.143 0.00 0.00 43.13 3.20
2947 3052 0.741221 GGCAACCATGAGTCGGTCTC 60.741 60.000 0.00 0.00 43.03 3.36
2959 3064 1.878102 GCTTCTTCTCTTCGGCAACCA 60.878 52.381 0.00 0.00 0.00 3.67
3060 3232 7.993183 GGAGTTCTTATATTTCAATGTCCTGGA 59.007 37.037 0.00 0.00 0.00 3.86
3082 3256 0.122435 TGGTGGGGGATAAAGGGAGT 59.878 55.000 0.00 0.00 0.00 3.85
3190 3365 1.985334 ACACAAATGCATGCATCACG 58.015 45.000 32.25 23.84 35.31 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.