Multiple sequence alignment - TraesCS7D01G484700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G484700 chr7D 100.000 2393 0 0 1 2393 595070707 595073099 0.000000e+00 4420
1 TraesCS7D01G484700 chr7D 97.126 1218 29 3 887 2103 231554992 231553780 0.000000e+00 2050
2 TraesCS7D01G484700 chr7B 97.209 1218 29 3 887 2103 662725837 662727050 0.000000e+00 2056
3 TraesCS7D01G484700 chr7B 97.044 1218 31 3 887 2103 663099992 663098779 0.000000e+00 2045
4 TraesCS7D01G484700 chr7B 98.643 737 9 1 142 877 663100787 663100051 0.000000e+00 1304
5 TraesCS7D01G484700 chr7B 82.759 290 42 6 2102 2387 689679009 689678724 3.950000e-63 252
6 TraesCS7D01G484700 chr7B 81.250 288 39 5 2102 2387 689186803 689186529 4.010000e-53 219
7 TraesCS7D01G484700 chr7B 89.209 139 15 0 3 141 672653477 672653615 8.790000e-40 174
8 TraesCS7D01G484700 chr7B 88.119 101 11 1 2287 2387 689185590 689185491 4.180000e-23 119
9 TraesCS7D01G484700 chr6D 97.209 1218 29 3 887 2103 389246389 389245176 0.000000e+00 2056
10 TraesCS7D01G484700 chr6D 98.643 737 9 1 142 877 389247184 389246448 0.000000e+00 1304
11 TraesCS7D01G484700 chr2D 97.209 1218 29 3 887 2103 591984042 591985255 0.000000e+00 2056
12 TraesCS7D01G484700 chr2D 98.643 737 9 1 142 877 272554419 272555155 0.000000e+00 1304
13 TraesCS7D01G484700 chr3B 97.126 1218 31 3 887 2103 201538954 201540168 0.000000e+00 2052
14 TraesCS7D01G484700 chr5D 97.126 1218 30 3 887 2103 503244705 503245918 0.000000e+00 2050
15 TraesCS7D01G484700 chr5D 98.779 737 8 1 142 877 503243910 503244646 0.000000e+00 1310
16 TraesCS7D01G484700 chr5D 98.779 737 8 1 142 877 503266665 503265929 0.000000e+00 1310
17 TraesCS7D01G484700 chr2A 97.126 1218 30 3 887 2103 726907022 726905809 0.000000e+00 2050
18 TraesCS7D01G484700 chr3A 96.962 1218 31 3 887 2103 66005699 66004487 0.000000e+00 2039
19 TraesCS7D01G484700 chr3A 98.372 737 11 1 142 877 66006494 66005758 0.000000e+00 1293
20 TraesCS7D01G484700 chr3D 98.507 737 9 2 142 877 589264885 589264150 0.000000e+00 1299
21 TraesCS7D01G484700 chrUn 98.372 737 11 1 142 877 216507480 216506744 0.000000e+00 1293
22 TraesCS7D01G484700 chrUn 98.367 735 11 1 142 875 388831853 388831119 0.000000e+00 1290
23 TraesCS7D01G484700 chr7A 89.420 293 20 4 2102 2393 688184884 688185166 2.260000e-95 359
24 TraesCS7D01G484700 chr7A 97.163 141 4 0 1 141 688184738 688184878 3.070000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G484700 chr7D 595070707 595073099 2392 False 4420.0 4420 100.0000 1 2393 1 chr7D.!!$F1 2392
1 TraesCS7D01G484700 chr7D 231553780 231554992 1212 True 2050.0 2050 97.1260 887 2103 1 chr7D.!!$R1 1216
2 TraesCS7D01G484700 chr7B 662725837 662727050 1213 False 2056.0 2056 97.2090 887 2103 1 chr7B.!!$F1 1216
3 TraesCS7D01G484700 chr7B 663098779 663100787 2008 True 1674.5 2045 97.8435 142 2103 2 chr7B.!!$R2 1961
4 TraesCS7D01G484700 chr6D 389245176 389247184 2008 True 1680.0 2056 97.9260 142 2103 2 chr6D.!!$R1 1961
5 TraesCS7D01G484700 chr2D 591984042 591985255 1213 False 2056.0 2056 97.2090 887 2103 1 chr2D.!!$F2 1216
6 TraesCS7D01G484700 chr2D 272554419 272555155 736 False 1304.0 1304 98.6430 142 877 1 chr2D.!!$F1 735
7 TraesCS7D01G484700 chr3B 201538954 201540168 1214 False 2052.0 2052 97.1260 887 2103 1 chr3B.!!$F1 1216
8 TraesCS7D01G484700 chr5D 503243910 503245918 2008 False 1680.0 2050 97.9525 142 2103 2 chr5D.!!$F1 1961
9 TraesCS7D01G484700 chr5D 503265929 503266665 736 True 1310.0 1310 98.7790 142 877 1 chr5D.!!$R1 735
10 TraesCS7D01G484700 chr2A 726905809 726907022 1213 True 2050.0 2050 97.1260 887 2103 1 chr2A.!!$R1 1216
11 TraesCS7D01G484700 chr3A 66004487 66006494 2007 True 1666.0 2039 97.6670 142 2103 2 chr3A.!!$R1 1961
12 TraesCS7D01G484700 chr3D 589264150 589264885 735 True 1299.0 1299 98.5070 142 877 1 chr3D.!!$R1 735
13 TraesCS7D01G484700 chrUn 216506744 216507480 736 True 1293.0 1293 98.3720 142 877 1 chrUn.!!$R1 735
14 TraesCS7D01G484700 chrUn 388831119 388831853 734 True 1290.0 1290 98.3670 142 875 1 chrUn.!!$R2 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.476771 TTGGAACCCTGAACAGACCC 59.523 55.0 3.19 0.37 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2215 2267 0.038744 CCCCCTTCACAGAAGCATGT 59.961 55.0 1.29 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.639601 GAACTAATTTAAAAGATGACAAAGGGG 57.360 33.333 0.00 0.00 0.00 4.79
39 40 8.950007 ACTAATTTAAAAGATGACAAAGGGGA 57.050 30.769 0.00 0.00 0.00 4.81
40 41 9.374711 ACTAATTTAAAAGATGACAAAGGGGAA 57.625 29.630 0.00 0.00 0.00 3.97
72 73 3.077907 GCCTACCAAGGGCTCACA 58.922 61.111 0.00 0.00 45.57 3.58
73 74 1.609783 GCCTACCAAGGGCTCACAT 59.390 57.895 0.00 0.00 45.57 3.21
74 75 0.749454 GCCTACCAAGGGCTCACATG 60.749 60.000 0.00 0.00 45.57 3.21
75 76 0.620556 CCTACCAAGGGCTCACATGT 59.379 55.000 0.00 0.00 39.48 3.21
76 77 1.837439 CCTACCAAGGGCTCACATGTA 59.163 52.381 0.00 0.00 39.48 2.29
77 78 2.238646 CCTACCAAGGGCTCACATGTAA 59.761 50.000 0.00 0.00 39.48 2.41
78 79 2.969821 ACCAAGGGCTCACATGTAAA 57.030 45.000 0.00 0.00 0.00 2.01
79 80 2.795329 ACCAAGGGCTCACATGTAAAG 58.205 47.619 0.00 0.00 0.00 1.85
80 81 2.375174 ACCAAGGGCTCACATGTAAAGA 59.625 45.455 10.75 0.00 0.00 2.52
81 82 3.010584 ACCAAGGGCTCACATGTAAAGAT 59.989 43.478 10.75 0.00 0.00 2.40
82 83 3.379372 CCAAGGGCTCACATGTAAAGATG 59.621 47.826 10.75 4.64 0.00 2.90
83 84 4.264253 CAAGGGCTCACATGTAAAGATGA 58.736 43.478 10.75 0.00 0.00 2.92
84 85 4.574674 AGGGCTCACATGTAAAGATGAA 57.425 40.909 10.75 0.00 0.00 2.57
85 86 4.265073 AGGGCTCACATGTAAAGATGAAC 58.735 43.478 10.75 0.00 0.00 3.18
86 87 4.018960 AGGGCTCACATGTAAAGATGAACT 60.019 41.667 10.75 0.14 0.00 3.01
87 88 5.189736 AGGGCTCACATGTAAAGATGAACTA 59.810 40.000 10.75 0.00 0.00 2.24
88 89 5.525378 GGGCTCACATGTAAAGATGAACTAG 59.475 44.000 10.75 0.00 0.00 2.57
89 90 6.109359 GGCTCACATGTAAAGATGAACTAGT 58.891 40.000 10.75 0.00 0.00 2.57
90 91 6.595716 GGCTCACATGTAAAGATGAACTAGTT 59.404 38.462 8.13 8.13 0.00 2.24
91 92 7.119846 GGCTCACATGTAAAGATGAACTAGTTT 59.880 37.037 10.02 0.00 0.00 2.66
92 93 8.171840 GCTCACATGTAAAGATGAACTAGTTTC 58.828 37.037 10.02 4.34 34.41 2.78
122 123 9.073475 AGTTATTAAAATTACTGACCAAGCACA 57.927 29.630 0.00 0.00 28.14 4.57
123 124 9.124807 GTTATTAAAATTACTGACCAAGCACAC 57.875 33.333 0.00 0.00 0.00 3.82
124 125 4.584327 AAAATTACTGACCAAGCACACC 57.416 40.909 0.00 0.00 0.00 4.16
125 126 2.949177 ATTACTGACCAAGCACACCA 57.051 45.000 0.00 0.00 0.00 4.17
126 127 1.961793 TTACTGACCAAGCACACCAC 58.038 50.000 0.00 0.00 0.00 4.16
127 128 1.128200 TACTGACCAAGCACACCACT 58.872 50.000 0.00 0.00 0.00 4.00
128 129 1.128200 ACTGACCAAGCACACCACTA 58.872 50.000 0.00 0.00 0.00 2.74
129 130 1.488812 ACTGACCAAGCACACCACTAA 59.511 47.619 0.00 0.00 0.00 2.24
130 131 1.873591 CTGACCAAGCACACCACTAAC 59.126 52.381 0.00 0.00 0.00 2.34
131 132 1.488812 TGACCAAGCACACCACTAACT 59.511 47.619 0.00 0.00 0.00 2.24
132 133 2.701423 TGACCAAGCACACCACTAACTA 59.299 45.455 0.00 0.00 0.00 2.24
133 134 3.326588 TGACCAAGCACACCACTAACTAT 59.673 43.478 0.00 0.00 0.00 2.12
134 135 4.202419 TGACCAAGCACACCACTAACTATT 60.202 41.667 0.00 0.00 0.00 1.73
135 136 4.324267 ACCAAGCACACCACTAACTATTC 58.676 43.478 0.00 0.00 0.00 1.75
136 137 4.041691 ACCAAGCACACCACTAACTATTCT 59.958 41.667 0.00 0.00 0.00 2.40
137 138 4.631813 CCAAGCACACCACTAACTATTCTC 59.368 45.833 0.00 0.00 0.00 2.87
138 139 5.237815 CAAGCACACCACTAACTATTCTCA 58.762 41.667 0.00 0.00 0.00 3.27
139 140 4.822026 AGCACACCACTAACTATTCTCAC 58.178 43.478 0.00 0.00 0.00 3.51
140 141 3.933332 GCACACCACTAACTATTCTCACC 59.067 47.826 0.00 0.00 0.00 4.02
157 158 2.171027 TCACCGTGTTGGGTTAAGTCTT 59.829 45.455 0.00 0.00 44.64 3.01
217 218 0.476771 TTGGAACCCTGAACAGACCC 59.523 55.000 3.19 0.37 0.00 4.46
361 362 2.294074 CAAAAACCCGTCCTCAGTTCA 58.706 47.619 0.00 0.00 0.00 3.18
506 507 6.096846 GCCATGTTTGAAGTCATTACCCTTAT 59.903 38.462 0.00 0.00 0.00 1.73
507 508 7.363793 GCCATGTTTGAAGTCATTACCCTTATT 60.364 37.037 0.00 0.00 0.00 1.40
762 763 5.707242 TGAGCTTATTATCCTAGGTCGTG 57.293 43.478 9.08 0.00 38.81 4.35
883 885 2.573340 GCTTTTGGCGTCCCCATG 59.427 61.111 0.00 0.00 44.89 3.66
884 886 2.275380 GCTTTTGGCGTCCCCATGT 61.275 57.895 0.00 0.00 44.89 3.21
885 887 1.883021 CTTTTGGCGTCCCCATGTC 59.117 57.895 0.00 0.00 44.89 3.06
959 1010 5.499313 TGGATAGTTCAATGTGCTCATCAA 58.501 37.500 1.01 0.00 32.56 2.57
982 1033 2.039418 CCTGACCCGAAGATGTGGATA 58.961 52.381 0.00 0.00 0.00 2.59
1217 1268 2.649190 AGAGCTATCTCTCGAGCACAA 58.351 47.619 7.81 0.00 46.32 3.33
1283 1334 5.181748 GCATCTTCACAGACCAAGAACTAT 58.818 41.667 0.00 0.00 32.40 2.12
1290 1341 5.039984 CACAGACCAAGAACTATGAGATCG 58.960 45.833 0.00 0.00 0.00 3.69
1482 1534 3.839778 AGGATCTTAGAGTGTCTAGGGC 58.160 50.000 0.00 0.00 29.56 5.19
1541 1593 2.949644 CCCATCGGAGTTATTTCCCAAC 59.050 50.000 0.00 0.00 33.46 3.77
1561 1613 1.207089 CGACTTGCCATGGTAAGAGGA 59.793 52.381 39.21 10.09 39.63 3.71
1622 1674 1.438651 GGAGTTGTATGCTGCGTTCA 58.561 50.000 0.00 0.00 0.00 3.18
1635 1687 3.012518 CTGCGTTCAGGAAGGATGAATT 58.987 45.455 5.95 0.00 38.81 2.17
1672 1724 6.551601 GGAGTCTACTGATTCTCTCCCAATTA 59.448 42.308 0.00 0.00 36.46 1.40
1729 1781 2.569404 GAGGTCTCTGGTTCAAGTCCAT 59.431 50.000 0.00 0.00 34.26 3.41
1734 1786 3.840078 TCTCTGGTTCAAGTCCATGATGA 59.160 43.478 0.00 0.00 34.26 2.92
1783 1835 7.180322 AGAAGAAGCATCTGACTCTTTCATA 57.820 36.000 0.00 0.00 35.59 2.15
1803 1855 0.537188 CATACTCCACTTGGCTCGGT 59.463 55.000 0.00 0.00 34.44 4.69
1867 1919 0.038435 TCGTTGCGATTACGGGTTGA 60.038 50.000 0.00 0.00 39.38 3.18
1887 1939 1.899814 ACTGTCTAATTGTCCAGGCGA 59.100 47.619 0.00 0.00 0.00 5.54
1923 1975 0.907704 TACCTGAACCGGTGGCTCAT 60.908 55.000 8.52 0.00 37.93 2.90
1950 2002 4.296056 TCTAAGTAATGGGGAAGAGGACC 58.704 47.826 0.00 0.00 0.00 4.46
1959 2011 1.003233 GGGAAGAGGACCGAAACATGT 59.997 52.381 0.00 0.00 0.00 3.21
2074 2126 2.897207 CGATAGTTGGGGTCGGCA 59.103 61.111 0.00 0.00 0.00 5.69
2096 2148 2.491825 GCTCTCCTAGGCTTCCCTCATA 60.492 54.545 2.96 0.00 41.75 2.15
2108 2160 3.564262 CCTCATATGGGATGCGCAT 57.436 52.632 25.66 25.66 40.13 4.73
2109 2161 2.696989 CCTCATATGGGATGCGCATA 57.303 50.000 25.40 8.61 41.98 3.14
2110 2162 3.204306 CCTCATATGGGATGCGCATAT 57.796 47.619 25.40 16.06 46.13 1.78
2124 2176 0.041488 GCATATGCGCTCTCAGTTGC 60.041 55.000 12.82 4.66 0.00 4.17
2125 2177 1.292992 CATATGCGCTCTCAGTTGCA 58.707 50.000 9.73 0.00 42.22 4.08
2126 2178 4.631773 ATGCGCTCTCAGTTGCAT 57.368 50.000 9.73 0.00 42.84 3.96
2127 2179 1.575244 TATGCGCTCTCAGTTGCATC 58.425 50.000 9.73 0.00 44.21 3.91
2128 2180 1.094073 ATGCGCTCTCAGTTGCATCC 61.094 55.000 9.73 0.00 44.21 3.51
2129 2181 1.742880 GCGCTCTCAGTTGCATCCA 60.743 57.895 0.00 0.00 0.00 3.41
2130 2182 1.300971 GCGCTCTCAGTTGCATCCAA 61.301 55.000 0.00 0.00 0.00 3.53
2131 2183 1.159285 CGCTCTCAGTTGCATCCAAA 58.841 50.000 0.00 0.00 31.68 3.28
2132 2184 1.135859 CGCTCTCAGTTGCATCCAAAC 60.136 52.381 0.00 0.00 31.68 2.93
2133 2185 1.881973 GCTCTCAGTTGCATCCAAACA 59.118 47.619 0.00 0.00 31.68 2.83
2134 2186 2.294233 GCTCTCAGTTGCATCCAAACAA 59.706 45.455 0.00 0.00 31.68 2.83
2135 2187 3.057033 GCTCTCAGTTGCATCCAAACAAT 60.057 43.478 0.00 0.00 31.68 2.71
2136 2188 4.156556 GCTCTCAGTTGCATCCAAACAATA 59.843 41.667 0.00 0.00 31.68 1.90
2137 2189 5.163581 GCTCTCAGTTGCATCCAAACAATAT 60.164 40.000 0.00 0.00 31.68 1.28
2138 2190 6.038603 GCTCTCAGTTGCATCCAAACAATATA 59.961 38.462 0.00 0.00 31.68 0.86
2139 2191 7.255381 GCTCTCAGTTGCATCCAAACAATATAT 60.255 37.037 0.00 0.00 31.68 0.86
2140 2192 7.933396 TCTCAGTTGCATCCAAACAATATATG 58.067 34.615 0.00 0.00 31.68 1.78
2141 2193 7.774625 TCTCAGTTGCATCCAAACAATATATGA 59.225 33.333 0.00 0.00 31.68 2.15
2142 2194 7.706159 TCAGTTGCATCCAAACAATATATGAC 58.294 34.615 0.00 0.00 31.68 3.06
2143 2195 7.338957 TCAGTTGCATCCAAACAATATATGACA 59.661 33.333 0.00 0.00 31.68 3.58
2144 2196 7.975058 CAGTTGCATCCAAACAATATATGACAA 59.025 33.333 0.00 0.00 31.68 3.18
2145 2197 8.192774 AGTTGCATCCAAACAATATATGACAAG 58.807 33.333 0.00 0.00 31.68 3.16
2146 2198 6.506147 TGCATCCAAACAATATATGACAAGC 58.494 36.000 0.00 0.00 0.00 4.01
2147 2199 6.096564 TGCATCCAAACAATATATGACAAGCA 59.903 34.615 0.00 0.00 0.00 3.91
2148 2200 7.149973 GCATCCAAACAATATATGACAAGCAT 58.850 34.615 0.00 0.00 41.08 3.79
2149 2201 7.115805 GCATCCAAACAATATATGACAAGCATG 59.884 37.037 0.00 0.00 37.87 4.06
2150 2202 7.643569 TCCAAACAATATATGACAAGCATGT 57.356 32.000 0.00 0.00 44.25 3.21
2158 2210 1.499056 GACAAGCATGTCGCACTGG 59.501 57.895 6.29 0.00 45.94 4.00
2159 2211 1.227943 ACAAGCATGTCGCACTGGT 60.228 52.632 0.00 0.00 46.13 4.00
2160 2212 0.819259 ACAAGCATGTCGCACTGGTT 60.819 50.000 0.00 0.00 46.13 3.67
2161 2213 1.155889 CAAGCATGTCGCACTGGTTA 58.844 50.000 0.00 0.00 46.13 2.85
2162 2214 1.739466 CAAGCATGTCGCACTGGTTAT 59.261 47.619 0.00 0.00 46.13 1.89
2163 2215 2.935849 CAAGCATGTCGCACTGGTTATA 59.064 45.455 0.00 0.00 46.13 0.98
2164 2216 2.550978 AGCATGTCGCACTGGTTATAC 58.449 47.619 0.00 0.00 46.13 1.47
2165 2217 1.597663 GCATGTCGCACTGGTTATACC 59.402 52.381 0.00 0.00 41.79 2.73
2166 2218 2.998169 GCATGTCGCACTGGTTATACCA 60.998 50.000 0.00 0.00 43.37 3.25
2177 2229 3.831323 TGGTTATACCAGATTGGCCATG 58.169 45.455 6.09 0.87 44.79 3.66
2178 2230 3.204158 TGGTTATACCAGATTGGCCATGT 59.796 43.478 6.09 0.00 44.79 3.21
2179 2231 3.569701 GGTTATACCAGATTGGCCATGTG 59.430 47.826 6.09 5.79 42.67 3.21
2180 2232 4.460263 GTTATACCAGATTGGCCATGTGA 58.540 43.478 6.09 0.00 42.67 3.58
2181 2233 3.668141 ATACCAGATTGGCCATGTGAA 57.332 42.857 6.09 0.00 42.67 3.18
2182 2234 2.537633 ACCAGATTGGCCATGTGAAT 57.462 45.000 6.09 0.00 42.67 2.57
2183 2235 2.823959 ACCAGATTGGCCATGTGAATT 58.176 42.857 6.09 0.00 42.67 2.17
2184 2236 3.979911 ACCAGATTGGCCATGTGAATTA 58.020 40.909 6.09 0.00 42.67 1.40
2185 2237 3.701040 ACCAGATTGGCCATGTGAATTAC 59.299 43.478 6.09 0.00 42.67 1.89
2186 2238 3.700539 CCAGATTGGCCATGTGAATTACA 59.299 43.478 6.09 0.00 44.87 2.41
2187 2239 6.843936 ACCAGATTGGCCATGTGAATTACAC 61.844 44.000 6.09 0.00 44.76 2.90
2198 2250 4.640789 GTGAATTACACCACCAACAACA 57.359 40.909 0.00 0.00 43.05 3.33
2199 2251 4.606961 GTGAATTACACCACCAACAACAG 58.393 43.478 0.00 0.00 43.05 3.16
2200 2252 4.097286 GTGAATTACACCACCAACAACAGT 59.903 41.667 0.00 0.00 43.05 3.55
2201 2253 5.297278 GTGAATTACACCACCAACAACAGTA 59.703 40.000 0.00 0.00 43.05 2.74
2202 2254 5.529430 TGAATTACACCACCAACAACAGTAG 59.471 40.000 0.00 0.00 0.00 2.57
2203 2255 1.675552 ACACCACCAACAACAGTAGC 58.324 50.000 0.00 0.00 0.00 3.58
2204 2256 1.211949 ACACCACCAACAACAGTAGCT 59.788 47.619 0.00 0.00 0.00 3.32
2205 2257 2.297701 CACCACCAACAACAGTAGCTT 58.702 47.619 0.00 0.00 0.00 3.74
2206 2258 3.118186 ACACCACCAACAACAGTAGCTTA 60.118 43.478 0.00 0.00 0.00 3.09
2207 2259 4.072131 CACCACCAACAACAGTAGCTTAT 58.928 43.478 0.00 0.00 0.00 1.73
2208 2260 4.072131 ACCACCAACAACAGTAGCTTATG 58.928 43.478 0.00 0.00 0.00 1.90
2209 2261 4.202419 ACCACCAACAACAGTAGCTTATGA 60.202 41.667 0.00 0.00 0.00 2.15
2210 2262 4.154195 CCACCAACAACAGTAGCTTATGAC 59.846 45.833 0.00 0.00 0.00 3.06
2211 2263 4.997395 CACCAACAACAGTAGCTTATGACT 59.003 41.667 0.00 0.00 0.00 3.41
2212 2264 5.470098 CACCAACAACAGTAGCTTATGACTT 59.530 40.000 0.00 0.00 0.00 3.01
2213 2265 5.470098 ACCAACAACAGTAGCTTATGACTTG 59.530 40.000 0.00 0.00 0.00 3.16
2214 2266 5.700832 CCAACAACAGTAGCTTATGACTTGA 59.299 40.000 0.00 0.00 0.00 3.02
2215 2267 6.204688 CCAACAACAGTAGCTTATGACTTGAA 59.795 38.462 0.00 0.00 0.00 2.69
2216 2268 6.787085 ACAACAGTAGCTTATGACTTGAAC 57.213 37.500 0.00 0.00 0.00 3.18
2217 2269 6.288294 ACAACAGTAGCTTATGACTTGAACA 58.712 36.000 0.00 0.00 0.00 3.18
2218 2270 6.936900 ACAACAGTAGCTTATGACTTGAACAT 59.063 34.615 0.00 0.00 0.00 2.71
2219 2271 6.974932 ACAGTAGCTTATGACTTGAACATG 57.025 37.500 0.00 0.00 0.00 3.21
2220 2272 5.352569 ACAGTAGCTTATGACTTGAACATGC 59.647 40.000 0.00 0.00 0.00 4.06
2221 2273 5.583854 CAGTAGCTTATGACTTGAACATGCT 59.416 40.000 0.00 0.00 33.67 3.79
2222 2274 6.093219 CAGTAGCTTATGACTTGAACATGCTT 59.907 38.462 0.00 0.00 32.25 3.91
2223 2275 5.557891 AGCTTATGACTTGAACATGCTTC 57.442 39.130 0.00 0.00 0.00 3.86
2224 2276 5.251764 AGCTTATGACTTGAACATGCTTCT 58.748 37.500 0.00 0.00 0.00 2.85
2225 2277 5.123502 AGCTTATGACTTGAACATGCTTCTG 59.876 40.000 0.00 0.00 0.00 3.02
2226 2278 5.106396 GCTTATGACTTGAACATGCTTCTGT 60.106 40.000 0.00 0.69 0.00 3.41
2227 2279 4.761235 ATGACTTGAACATGCTTCTGTG 57.239 40.909 0.00 0.00 0.00 3.66
2228 2280 3.807553 TGACTTGAACATGCTTCTGTGA 58.192 40.909 0.00 0.00 0.00 3.58
2229 2281 4.198530 TGACTTGAACATGCTTCTGTGAA 58.801 39.130 0.00 0.00 0.00 3.18
2230 2282 4.274214 TGACTTGAACATGCTTCTGTGAAG 59.726 41.667 0.00 3.20 0.00 3.02
2231 2283 3.567164 ACTTGAACATGCTTCTGTGAAGG 59.433 43.478 9.04 0.00 0.00 3.46
2232 2284 2.507484 TGAACATGCTTCTGTGAAGGG 58.493 47.619 9.04 0.00 0.00 3.95
2233 2285 1.815003 GAACATGCTTCTGTGAAGGGG 59.185 52.381 9.04 0.00 0.00 4.79
2234 2286 0.038744 ACATGCTTCTGTGAAGGGGG 59.961 55.000 9.04 0.00 0.00 5.40
2251 2303 3.728385 GGGGGCAATGATATAGAAGCT 57.272 47.619 0.00 0.00 0.00 3.74
2252 2304 4.039603 GGGGGCAATGATATAGAAGCTT 57.960 45.455 0.00 0.00 0.00 3.74
2253 2305 3.760684 GGGGGCAATGATATAGAAGCTTG 59.239 47.826 2.10 0.00 0.00 4.01
2254 2306 3.192212 GGGGCAATGATATAGAAGCTTGC 59.808 47.826 2.10 0.00 38.53 4.01
2255 2307 4.077822 GGGCAATGATATAGAAGCTTGCT 58.922 43.478 2.10 3.53 39.08 3.91
2256 2308 4.155644 GGGCAATGATATAGAAGCTTGCTC 59.844 45.833 2.10 0.00 39.08 4.26
2257 2309 4.155644 GGCAATGATATAGAAGCTTGCTCC 59.844 45.833 2.10 0.00 39.08 4.70
2258 2310 4.155644 GCAATGATATAGAAGCTTGCTCCC 59.844 45.833 2.10 0.00 36.83 4.30
2259 2311 5.311265 CAATGATATAGAAGCTTGCTCCCA 58.689 41.667 2.10 0.00 0.00 4.37
2260 2312 5.573380 ATGATATAGAAGCTTGCTCCCAA 57.427 39.130 2.10 0.00 0.00 4.12
2269 2321 3.751767 TTGCTCCCAAGACATGCTT 57.248 47.368 0.00 0.00 37.29 3.91
2270 2322 2.877097 TTGCTCCCAAGACATGCTTA 57.123 45.000 0.00 0.00 34.31 3.09
2271 2323 3.370840 TTGCTCCCAAGACATGCTTAT 57.629 42.857 0.00 0.00 34.31 1.73
2272 2324 3.370840 TGCTCCCAAGACATGCTTATT 57.629 42.857 0.00 0.00 34.31 1.40
2273 2325 4.502105 TGCTCCCAAGACATGCTTATTA 57.498 40.909 0.00 0.00 34.31 0.98
2274 2326 4.854173 TGCTCCCAAGACATGCTTATTAA 58.146 39.130 0.00 0.00 34.31 1.40
2275 2327 5.260424 TGCTCCCAAGACATGCTTATTAAA 58.740 37.500 0.00 0.00 34.31 1.52
2276 2328 5.714333 TGCTCCCAAGACATGCTTATTAAAA 59.286 36.000 0.00 0.00 34.31 1.52
2277 2329 6.380846 TGCTCCCAAGACATGCTTATTAAAAT 59.619 34.615 0.00 0.00 34.31 1.82
2278 2330 7.559533 TGCTCCCAAGACATGCTTATTAAAATA 59.440 33.333 0.00 0.00 34.31 1.40
2279 2331 7.862873 GCTCCCAAGACATGCTTATTAAAATAC 59.137 37.037 0.00 0.00 34.31 1.89
2280 2332 9.125026 CTCCCAAGACATGCTTATTAAAATACT 57.875 33.333 0.00 0.00 34.31 2.12
2281 2333 9.120538 TCCCAAGACATGCTTATTAAAATACTC 57.879 33.333 0.00 0.00 34.31 2.59
2282 2334 8.352942 CCCAAGACATGCTTATTAAAATACTCC 58.647 37.037 0.00 0.00 34.31 3.85
2283 2335 8.070171 CCAAGACATGCTTATTAAAATACTCCG 58.930 37.037 0.00 0.00 34.31 4.63
2284 2336 8.826710 CAAGACATGCTTATTAAAATACTCCGA 58.173 33.333 0.00 0.00 34.31 4.55
2285 2337 9.561069 AAGACATGCTTATTAAAATACTCCGAT 57.439 29.630 0.00 0.00 34.31 4.18
2301 2353 4.930963 CTCCGATAGAGCATCATCATACC 58.069 47.826 0.00 0.00 37.82 2.73
2302 2354 4.604156 TCCGATAGAGCATCATCATACCT 58.396 43.478 0.00 0.00 37.82 3.08
2303 2355 4.642437 TCCGATAGAGCATCATCATACCTC 59.358 45.833 0.00 0.00 37.82 3.85
2304 2356 4.400567 CCGATAGAGCATCATCATACCTCA 59.599 45.833 0.00 0.00 37.82 3.86
2305 2357 5.339177 CGATAGAGCATCATCATACCTCAC 58.661 45.833 0.00 0.00 37.82 3.51
2306 2358 5.659463 GATAGAGCATCATCATACCTCACC 58.341 45.833 0.00 0.00 37.82 4.02
2307 2359 3.311990 AGAGCATCATCATACCTCACCA 58.688 45.455 0.00 0.00 37.82 4.17
2308 2360 3.324268 AGAGCATCATCATACCTCACCAG 59.676 47.826 0.00 0.00 37.82 4.00
2309 2361 3.311990 AGCATCATCATACCTCACCAGA 58.688 45.455 0.00 0.00 0.00 3.86
2310 2362 3.908733 AGCATCATCATACCTCACCAGAT 59.091 43.478 0.00 0.00 0.00 2.90
2311 2363 4.350225 AGCATCATCATACCTCACCAGATT 59.650 41.667 0.00 0.00 0.00 2.40
2312 2364 5.068636 GCATCATCATACCTCACCAGATTT 58.931 41.667 0.00 0.00 0.00 2.17
2313 2365 5.048921 GCATCATCATACCTCACCAGATTTG 60.049 44.000 0.00 0.00 0.00 2.32
2329 2381 4.860907 CAGATTTGGAGTATTTTGCTGTGC 59.139 41.667 0.00 0.00 0.00 4.57
2330 2382 4.523943 AGATTTGGAGTATTTTGCTGTGCA 59.476 37.500 0.00 0.00 36.47 4.57
2331 2383 4.870123 TTTGGAGTATTTTGCTGTGCAT 57.130 36.364 0.00 0.00 38.76 3.96
2332 2384 3.853831 TGGAGTATTTTGCTGTGCATG 57.146 42.857 0.00 0.00 38.76 4.06
2333 2385 3.156293 TGGAGTATTTTGCTGTGCATGT 58.844 40.909 0.00 0.00 38.76 3.21
2334 2386 3.057386 TGGAGTATTTTGCTGTGCATGTG 60.057 43.478 0.00 0.00 38.76 3.21
2335 2387 3.057315 GGAGTATTTTGCTGTGCATGTGT 60.057 43.478 0.00 0.00 38.76 3.72
2336 2388 3.904571 AGTATTTTGCTGTGCATGTGTG 58.095 40.909 0.00 0.00 38.76 3.82
2356 2408 4.429108 GTGCAAACCACAAAGTACAATGT 58.571 39.130 0.00 0.00 44.06 2.71
2357 2409 4.267452 GTGCAAACCACAAAGTACAATGTG 59.733 41.667 18.86 18.86 45.06 3.21
2358 2410 3.245048 GCAAACCACAAAGTACAATGTGC 59.755 43.478 19.88 9.11 44.32 4.57
2359 2411 4.681744 CAAACCACAAAGTACAATGTGCT 58.318 39.130 19.88 0.00 44.32 4.40
2360 2412 3.988379 ACCACAAAGTACAATGTGCTG 57.012 42.857 19.88 12.69 44.32 4.41
2361 2413 2.622942 ACCACAAAGTACAATGTGCTGG 59.377 45.455 19.88 5.40 44.32 4.85
2362 2414 2.030007 CCACAAAGTACAATGTGCTGGG 60.030 50.000 19.88 3.11 44.32 4.45
2363 2415 2.884012 CACAAAGTACAATGTGCTGGGA 59.116 45.455 15.33 0.00 40.32 4.37
2364 2416 3.058016 CACAAAGTACAATGTGCTGGGAG 60.058 47.826 15.33 0.00 40.32 4.30
2365 2417 1.826385 AAGTACAATGTGCTGGGAGC 58.174 50.000 4.45 0.00 42.82 4.70
2366 2418 0.035056 AGTACAATGTGCTGGGAGCC 60.035 55.000 2.53 0.00 41.51 4.70
2367 2419 1.032114 GTACAATGTGCTGGGAGCCC 61.032 60.000 0.00 0.00 41.51 5.19
2368 2420 2.210144 TACAATGTGCTGGGAGCCCC 62.210 60.000 2.49 3.42 45.71 5.80
2377 2429 3.006677 GGGAGCCCCAGCAATACA 58.993 61.111 5.45 0.00 44.65 2.29
2378 2430 1.538666 GGGAGCCCCAGCAATACAT 59.461 57.895 5.45 0.00 44.65 2.29
2379 2431 0.106015 GGGAGCCCCAGCAATACATT 60.106 55.000 5.45 0.00 44.65 2.71
2380 2432 1.689258 GGGAGCCCCAGCAATACATTT 60.689 52.381 5.45 0.00 44.65 2.32
2381 2433 2.424234 GGGAGCCCCAGCAATACATTTA 60.424 50.000 5.45 0.00 44.65 1.40
2382 2434 3.295973 GGAGCCCCAGCAATACATTTAA 58.704 45.455 0.00 0.00 43.56 1.52
2383 2435 3.319122 GGAGCCCCAGCAATACATTTAAG 59.681 47.826 0.00 0.00 43.56 1.85
2384 2436 3.954258 GAGCCCCAGCAATACATTTAAGT 59.046 43.478 0.00 0.00 43.56 2.24
2385 2437 4.352893 AGCCCCAGCAATACATTTAAGTT 58.647 39.130 0.00 0.00 43.56 2.66
2386 2438 4.160252 AGCCCCAGCAATACATTTAAGTTG 59.840 41.667 0.00 0.00 43.56 3.16
2387 2439 4.432712 CCCCAGCAATACATTTAAGTTGC 58.567 43.478 0.99 0.99 45.37 4.17
2388 2440 4.081752 CCCCAGCAATACATTTAAGTTGCA 60.082 41.667 10.97 0.00 46.92 4.08
2389 2441 4.864247 CCCAGCAATACATTTAAGTTGCAC 59.136 41.667 10.97 0.00 46.92 4.57
2390 2442 5.468592 CCAGCAATACATTTAAGTTGCACA 58.531 37.500 10.97 0.00 46.92 4.57
2391 2443 5.574055 CCAGCAATACATTTAAGTTGCACAG 59.426 40.000 10.97 1.68 46.92 3.66
2392 2444 6.151691 CAGCAATACATTTAAGTTGCACAGT 58.848 36.000 10.97 0.00 46.92 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.639601 CCCCTTTGTCATCTTTTAAATTAGTTC 57.360 33.333 0.00 0.00 0.00 3.01
13 14 9.374711 TCCCCTTTGTCATCTTTTAAATTAGTT 57.625 29.630 0.00 0.00 0.00 2.24
14 15 8.950007 TCCCCTTTGTCATCTTTTAAATTAGT 57.050 30.769 0.00 0.00 0.00 2.24
56 57 0.620556 ACATGTGAGCCCTTGGTAGG 59.379 55.000 0.00 0.00 41.60 3.18
57 58 3.627395 TTACATGTGAGCCCTTGGTAG 57.373 47.619 9.11 0.00 0.00 3.18
58 59 3.585289 TCTTTACATGTGAGCCCTTGGTA 59.415 43.478 9.11 0.00 0.00 3.25
59 60 2.375174 TCTTTACATGTGAGCCCTTGGT 59.625 45.455 9.11 0.00 0.00 3.67
60 61 3.071874 TCTTTACATGTGAGCCCTTGG 57.928 47.619 9.11 0.00 0.00 3.61
61 62 4.264253 TCATCTTTACATGTGAGCCCTTG 58.736 43.478 9.11 0.00 0.00 3.61
62 63 4.574674 TCATCTTTACATGTGAGCCCTT 57.425 40.909 9.11 0.00 0.00 3.95
63 64 4.018960 AGTTCATCTTTACATGTGAGCCCT 60.019 41.667 9.11 0.00 0.00 5.19
64 65 4.265073 AGTTCATCTTTACATGTGAGCCC 58.735 43.478 9.11 0.00 0.00 5.19
65 66 6.109359 ACTAGTTCATCTTTACATGTGAGCC 58.891 40.000 9.11 0.00 0.00 4.70
66 67 7.602517 AACTAGTTCATCTTTACATGTGAGC 57.397 36.000 9.11 0.00 0.00 4.26
67 68 9.208022 TGAAACTAGTTCATCTTTACATGTGAG 57.792 33.333 8.95 6.67 41.47 3.51
68 69 9.208022 CTGAAACTAGTTCATCTTTACATGTGA 57.792 33.333 8.95 0.00 45.27 3.58
69 70 8.993121 ACTGAAACTAGTTCATCTTTACATGTG 58.007 33.333 8.95 0.00 45.27 3.21
96 97 9.073475 TGTGCTTGGTCAGTAATTTTAATAACT 57.927 29.630 0.00 0.00 0.00 2.24
97 98 9.124807 GTGTGCTTGGTCAGTAATTTTAATAAC 57.875 33.333 0.00 0.00 0.00 1.89
98 99 8.301002 GGTGTGCTTGGTCAGTAATTTTAATAA 58.699 33.333 0.00 0.00 0.00 1.40
99 100 7.448777 TGGTGTGCTTGGTCAGTAATTTTAATA 59.551 33.333 0.00 0.00 0.00 0.98
100 101 6.266558 TGGTGTGCTTGGTCAGTAATTTTAAT 59.733 34.615 0.00 0.00 0.00 1.40
101 102 5.594725 TGGTGTGCTTGGTCAGTAATTTTAA 59.405 36.000 0.00 0.00 0.00 1.52
102 103 5.009210 GTGGTGTGCTTGGTCAGTAATTTTA 59.991 40.000 0.00 0.00 0.00 1.52
103 104 3.957497 TGGTGTGCTTGGTCAGTAATTTT 59.043 39.130 0.00 0.00 0.00 1.82
104 105 3.317993 GTGGTGTGCTTGGTCAGTAATTT 59.682 43.478 0.00 0.00 0.00 1.82
105 106 2.884639 GTGGTGTGCTTGGTCAGTAATT 59.115 45.455 0.00 0.00 0.00 1.40
106 107 2.106511 AGTGGTGTGCTTGGTCAGTAAT 59.893 45.455 0.00 0.00 0.00 1.89
107 108 1.488812 AGTGGTGTGCTTGGTCAGTAA 59.511 47.619 0.00 0.00 0.00 2.24
108 109 1.128200 AGTGGTGTGCTTGGTCAGTA 58.872 50.000 0.00 0.00 0.00 2.74
109 110 1.128200 TAGTGGTGTGCTTGGTCAGT 58.872 50.000 0.00 0.00 0.00 3.41
110 111 1.873591 GTTAGTGGTGTGCTTGGTCAG 59.126 52.381 0.00 0.00 0.00 3.51
111 112 1.488812 AGTTAGTGGTGTGCTTGGTCA 59.511 47.619 0.00 0.00 0.00 4.02
112 113 2.256117 AGTTAGTGGTGTGCTTGGTC 57.744 50.000 0.00 0.00 0.00 4.02
113 114 4.041691 AGAATAGTTAGTGGTGTGCTTGGT 59.958 41.667 0.00 0.00 0.00 3.67
114 115 4.579869 AGAATAGTTAGTGGTGTGCTTGG 58.420 43.478 0.00 0.00 0.00 3.61
115 116 5.120830 GTGAGAATAGTTAGTGGTGTGCTTG 59.879 44.000 0.00 0.00 0.00 4.01
116 117 5.238583 GTGAGAATAGTTAGTGGTGTGCTT 58.761 41.667 0.00 0.00 0.00 3.91
117 118 4.322801 GGTGAGAATAGTTAGTGGTGTGCT 60.323 45.833 0.00 0.00 0.00 4.40
118 119 3.933332 GGTGAGAATAGTTAGTGGTGTGC 59.067 47.826 0.00 0.00 0.00 4.57
119 120 4.174009 CGGTGAGAATAGTTAGTGGTGTG 58.826 47.826 0.00 0.00 0.00 3.82
120 121 3.830755 ACGGTGAGAATAGTTAGTGGTGT 59.169 43.478 0.00 0.00 0.00 4.16
121 122 4.174009 CACGGTGAGAATAGTTAGTGGTG 58.826 47.826 0.74 0.00 0.00 4.17
122 123 3.830755 ACACGGTGAGAATAGTTAGTGGT 59.169 43.478 16.29 0.00 33.18 4.16
123 124 4.451629 ACACGGTGAGAATAGTTAGTGG 57.548 45.455 16.29 0.00 33.18 4.00
124 125 4.625742 CCAACACGGTGAGAATAGTTAGTG 59.374 45.833 16.29 0.00 34.85 2.74
125 126 4.322499 CCCAACACGGTGAGAATAGTTAGT 60.322 45.833 16.29 0.00 0.00 2.24
126 127 4.181578 CCCAACACGGTGAGAATAGTTAG 58.818 47.826 16.29 0.00 0.00 2.34
127 128 3.579586 ACCCAACACGGTGAGAATAGTTA 59.420 43.478 16.29 0.00 33.77 2.24
128 129 2.370849 ACCCAACACGGTGAGAATAGTT 59.629 45.455 16.29 0.00 33.77 2.24
129 130 1.975680 ACCCAACACGGTGAGAATAGT 59.024 47.619 16.29 1.60 33.77 2.12
130 131 2.762535 ACCCAACACGGTGAGAATAG 57.237 50.000 16.29 0.97 33.77 1.73
131 132 4.040706 ACTTAACCCAACACGGTGAGAATA 59.959 41.667 16.29 0.00 35.83 1.75
132 133 3.181448 ACTTAACCCAACACGGTGAGAAT 60.181 43.478 16.29 0.00 35.83 2.40
133 134 2.171027 ACTTAACCCAACACGGTGAGAA 59.829 45.455 16.29 0.00 35.83 2.87
134 135 1.764134 ACTTAACCCAACACGGTGAGA 59.236 47.619 16.29 0.00 35.83 3.27
135 136 2.140717 GACTTAACCCAACACGGTGAG 58.859 52.381 16.29 6.75 35.83 3.51
136 137 1.764134 AGACTTAACCCAACACGGTGA 59.236 47.619 16.29 0.00 35.83 4.02
137 138 2.249844 AGACTTAACCCAACACGGTG 57.750 50.000 6.58 6.58 35.83 4.94
138 139 2.567985 CAAGACTTAACCCAACACGGT 58.432 47.619 0.00 0.00 37.93 4.83
139 140 1.265905 GCAAGACTTAACCCAACACGG 59.734 52.381 0.00 0.00 0.00 4.94
140 141 1.944024 TGCAAGACTTAACCCAACACG 59.056 47.619 0.00 0.00 0.00 4.49
157 158 4.927782 AGGGTTGCGCTCGTTGCA 62.928 61.111 9.73 0.00 43.06 4.08
506 507 0.544697 GGCATTCCCCTCCTTACGAA 59.455 55.000 0.00 0.00 0.00 3.85
507 508 0.326238 AGGCATTCCCCTCCTTACGA 60.326 55.000 0.00 0.00 0.00 3.43
877 879 1.460218 ATTATCAGGGGGACATGGGG 58.540 55.000 0.00 0.00 43.76 4.96
878 880 2.880443 CAATTATCAGGGGGACATGGG 58.120 52.381 0.00 0.00 43.76 4.00
880 882 1.881973 CGCAATTATCAGGGGGACATG 59.118 52.381 0.00 0.00 45.31 3.21
881 883 1.494721 ACGCAATTATCAGGGGGACAT 59.505 47.619 0.00 0.00 0.00 3.06
882 884 0.916086 ACGCAATTATCAGGGGGACA 59.084 50.000 0.00 0.00 0.00 4.02
883 885 1.594331 GACGCAATTATCAGGGGGAC 58.406 55.000 0.00 0.00 0.00 4.46
884 886 0.105964 CGACGCAATTATCAGGGGGA 59.894 55.000 0.00 0.00 0.00 4.81
885 887 0.179056 ACGACGCAATTATCAGGGGG 60.179 55.000 0.00 0.00 0.00 5.40
959 1010 2.283529 ACATCTTCGGGTCAGGCGT 61.284 57.895 0.00 0.00 0.00 5.68
982 1033 2.696707 CCATGCTAATGTGCCTTGGATT 59.303 45.455 0.00 0.00 37.39 3.01
1283 1334 1.839994 AGAATGAAAGGGGCGATCTCA 59.160 47.619 0.00 0.00 0.00 3.27
1431 1483 0.908910 TGCTCCGCTCCCATTTAAGA 59.091 50.000 0.00 0.00 0.00 2.10
1445 1497 3.829026 AGATCCTTTTTCAAACCTGCTCC 59.171 43.478 0.00 0.00 0.00 4.70
1482 1534 3.086600 GAGACCCTCCTGGCCCAG 61.087 72.222 2.91 2.91 37.83 4.45
1541 1593 1.207089 TCCTCTTACCATGGCAAGTCG 59.793 52.381 21.74 14.59 0.00 4.18
1561 1613 1.149101 TGTGCTTCTTCCCCCTTCTT 58.851 50.000 0.00 0.00 0.00 2.52
1622 1674 1.133976 CGGGAGCAATTCATCCTTCCT 60.134 52.381 5.62 0.00 35.80 3.36
1672 1724 1.380785 TCGCCCCTACGATCCAACT 60.381 57.895 0.00 0.00 37.09 3.16
1783 1835 0.537188 CCGAGCCAAGTGGAGTATGT 59.463 55.000 0.18 0.00 37.39 2.29
1803 1855 2.338809 CCAACTGAGCTATATCCCCCA 58.661 52.381 0.00 0.00 0.00 4.96
1867 1919 1.899814 TCGCCTGGACAATTAGACAGT 59.100 47.619 0.00 0.00 0.00 3.55
1950 2002 4.747108 AGAGTCTTTCAGTGACATGTTTCG 59.253 41.667 0.00 0.00 36.94 3.46
1959 2011 5.377478 TGTCTCAGTAGAGTCTTTCAGTGA 58.623 41.667 0.00 0.00 42.66 3.41
2067 2119 2.494530 CCTAGGAGAGCTGCCGACC 61.495 68.421 1.05 0.00 0.00 4.79
2074 2126 0.105709 GAGGGAAGCCTAGGAGAGCT 60.106 60.000 14.75 0.00 42.40 4.09
2105 2157 0.041488 GCAACTGAGAGCGCATATGC 60.041 55.000 18.08 18.08 37.78 3.14
2106 2158 1.292992 TGCAACTGAGAGCGCATATG 58.707 50.000 11.47 0.00 0.00 1.78
2107 2159 2.141517 GATGCAACTGAGAGCGCATAT 58.858 47.619 11.47 0.00 44.77 1.78
2108 2160 1.575244 GATGCAACTGAGAGCGCATA 58.425 50.000 11.47 0.00 44.77 3.14
2109 2161 4.631773 ATGCAACTGAGAGCGCAT 57.368 50.000 11.47 0.00 40.18 4.73
2110 2162 1.742880 GGATGCAACTGAGAGCGCA 60.743 57.895 11.47 0.00 39.01 6.09
2111 2163 1.300971 TTGGATGCAACTGAGAGCGC 61.301 55.000 0.00 0.00 0.00 5.92
2112 2164 1.135859 GTTTGGATGCAACTGAGAGCG 60.136 52.381 0.00 0.00 0.00 5.03
2113 2165 1.881973 TGTTTGGATGCAACTGAGAGC 59.118 47.619 0.00 0.00 0.00 4.09
2114 2166 4.778534 ATTGTTTGGATGCAACTGAGAG 57.221 40.909 0.00 0.00 0.00 3.20
2115 2167 7.774625 TCATATATTGTTTGGATGCAACTGAGA 59.225 33.333 0.00 0.00 0.00 3.27
2116 2168 7.859377 GTCATATATTGTTTGGATGCAACTGAG 59.141 37.037 0.00 0.00 0.00 3.35
2117 2169 7.338957 TGTCATATATTGTTTGGATGCAACTGA 59.661 33.333 0.00 0.00 0.00 3.41
2118 2170 7.482474 TGTCATATATTGTTTGGATGCAACTG 58.518 34.615 0.00 0.00 0.00 3.16
2119 2171 7.643569 TGTCATATATTGTTTGGATGCAACT 57.356 32.000 0.00 0.00 0.00 3.16
2120 2172 7.043192 GCTTGTCATATATTGTTTGGATGCAAC 60.043 37.037 0.00 0.00 0.00 4.17
2121 2173 6.979817 GCTTGTCATATATTGTTTGGATGCAA 59.020 34.615 0.00 0.00 0.00 4.08
2122 2174 6.096564 TGCTTGTCATATATTGTTTGGATGCA 59.903 34.615 0.00 0.00 0.00 3.96
2123 2175 6.506147 TGCTTGTCATATATTGTTTGGATGC 58.494 36.000 0.00 0.00 0.00 3.91
2124 2176 8.139350 ACATGCTTGTCATATATTGTTTGGATG 58.861 33.333 0.00 0.00 33.19 3.51
2125 2177 8.241497 ACATGCTTGTCATATATTGTTTGGAT 57.759 30.769 0.00 0.00 33.19 3.41
2126 2178 7.643569 ACATGCTTGTCATATATTGTTTGGA 57.356 32.000 0.00 0.00 33.19 3.53
2141 2193 0.819259 AACCAGTGCGACATGCTTGT 60.819 50.000 4.68 4.68 46.63 3.16
2142 2194 1.155889 TAACCAGTGCGACATGCTTG 58.844 50.000 0.00 0.00 46.63 4.01
2143 2195 2.113860 ATAACCAGTGCGACATGCTT 57.886 45.000 0.00 0.00 46.63 3.91
2144 2196 2.550978 GTATAACCAGTGCGACATGCT 58.449 47.619 0.00 0.00 46.63 3.79
2145 2197 1.597663 GGTATAACCAGTGCGACATGC 59.402 52.381 0.00 0.00 40.63 4.06
2146 2198 2.899976 TGGTATAACCAGTGCGACATG 58.100 47.619 0.00 0.00 44.79 3.21
2157 2209 3.569701 CACATGGCCAATCTGGTATAACC 59.430 47.826 10.96 0.00 40.46 2.85
2158 2210 4.460263 TCACATGGCCAATCTGGTATAAC 58.540 43.478 10.96 0.00 40.46 1.89
2159 2211 4.787135 TCACATGGCCAATCTGGTATAA 57.213 40.909 10.96 0.00 40.46 0.98
2160 2212 4.787135 TTCACATGGCCAATCTGGTATA 57.213 40.909 10.96 0.00 40.46 1.47
2161 2213 3.668141 TTCACATGGCCAATCTGGTAT 57.332 42.857 10.96 0.00 40.46 2.73
2162 2214 3.668141 ATTCACATGGCCAATCTGGTA 57.332 42.857 10.96 0.00 40.46 3.25
2163 2215 2.537633 ATTCACATGGCCAATCTGGT 57.462 45.000 10.96 0.00 40.46 4.00
2164 2216 3.700539 TGTAATTCACATGGCCAATCTGG 59.299 43.478 10.96 0.00 34.33 3.86
2165 2217 4.675510 GTGTAATTCACATGGCCAATCTG 58.324 43.478 10.96 6.36 45.51 2.90
2166 2218 4.989279 GTGTAATTCACATGGCCAATCT 57.011 40.909 10.96 0.00 45.51 2.40
2177 2229 4.097286 ACTGTTGTTGGTGGTGTAATTCAC 59.903 41.667 0.00 0.00 45.47 3.18
2178 2230 4.274147 ACTGTTGTTGGTGGTGTAATTCA 58.726 39.130 0.00 0.00 0.00 2.57
2179 2231 4.911514 ACTGTTGTTGGTGGTGTAATTC 57.088 40.909 0.00 0.00 0.00 2.17
2180 2232 4.277423 GCTACTGTTGTTGGTGGTGTAATT 59.723 41.667 0.00 0.00 0.00 1.40
2181 2233 3.818773 GCTACTGTTGTTGGTGGTGTAAT 59.181 43.478 0.00 0.00 0.00 1.89
2182 2234 3.118186 AGCTACTGTTGTTGGTGGTGTAA 60.118 43.478 0.00 0.00 0.00 2.41
2183 2235 2.436542 AGCTACTGTTGTTGGTGGTGTA 59.563 45.455 0.00 0.00 0.00 2.90
2184 2236 1.211949 AGCTACTGTTGTTGGTGGTGT 59.788 47.619 0.00 0.00 0.00 4.16
2185 2237 1.967319 AGCTACTGTTGTTGGTGGTG 58.033 50.000 0.00 0.00 0.00 4.17
2186 2238 2.729028 AAGCTACTGTTGTTGGTGGT 57.271 45.000 0.00 0.00 30.86 4.16
2187 2239 4.154195 GTCATAAGCTACTGTTGTTGGTGG 59.846 45.833 0.00 0.00 30.86 4.61
2188 2240 4.997395 AGTCATAAGCTACTGTTGTTGGTG 59.003 41.667 0.00 0.00 30.86 4.17
2189 2241 5.228945 AGTCATAAGCTACTGTTGTTGGT 57.771 39.130 0.00 0.00 0.00 3.67
2190 2242 5.700832 TCAAGTCATAAGCTACTGTTGTTGG 59.299 40.000 0.00 0.00 0.00 3.77
2191 2243 6.785488 TCAAGTCATAAGCTACTGTTGTTG 57.215 37.500 0.00 0.00 0.00 3.33
2192 2244 6.765989 TGTTCAAGTCATAAGCTACTGTTGTT 59.234 34.615 0.00 0.00 0.00 2.83
2193 2245 6.288294 TGTTCAAGTCATAAGCTACTGTTGT 58.712 36.000 0.00 0.00 0.00 3.32
2194 2246 6.785488 TGTTCAAGTCATAAGCTACTGTTG 57.215 37.500 0.00 0.00 0.00 3.33
2195 2247 6.128172 GCATGTTCAAGTCATAAGCTACTGTT 60.128 38.462 0.00 0.00 0.00 3.16
2196 2248 5.352569 GCATGTTCAAGTCATAAGCTACTGT 59.647 40.000 0.00 0.00 0.00 3.55
2197 2249 5.583854 AGCATGTTCAAGTCATAAGCTACTG 59.416 40.000 0.00 0.00 0.00 2.74
2198 2250 5.738909 AGCATGTTCAAGTCATAAGCTACT 58.261 37.500 0.00 0.00 0.00 2.57
2199 2251 6.314896 AGAAGCATGTTCAAGTCATAAGCTAC 59.685 38.462 9.64 0.00 28.99 3.58
2200 2252 6.314648 CAGAAGCATGTTCAAGTCATAAGCTA 59.685 38.462 9.64 0.00 28.99 3.32
2201 2253 5.123502 CAGAAGCATGTTCAAGTCATAAGCT 59.876 40.000 9.64 0.00 0.00 3.74
2202 2254 5.106396 ACAGAAGCATGTTCAAGTCATAAGC 60.106 40.000 9.64 0.00 0.00 3.09
2203 2255 6.148315 TCACAGAAGCATGTTCAAGTCATAAG 59.852 38.462 9.64 0.00 0.00 1.73
2204 2256 5.997129 TCACAGAAGCATGTTCAAGTCATAA 59.003 36.000 9.64 0.00 0.00 1.90
2205 2257 5.550290 TCACAGAAGCATGTTCAAGTCATA 58.450 37.500 9.64 0.00 0.00 2.15
2206 2258 4.392047 TCACAGAAGCATGTTCAAGTCAT 58.608 39.130 9.64 0.00 0.00 3.06
2207 2259 3.807553 TCACAGAAGCATGTTCAAGTCA 58.192 40.909 9.64 0.00 0.00 3.41
2208 2260 4.320057 CCTTCACAGAAGCATGTTCAAGTC 60.320 45.833 9.64 0.00 0.00 3.01
2209 2261 3.567164 CCTTCACAGAAGCATGTTCAAGT 59.433 43.478 9.64 5.90 0.00 3.16
2210 2262 3.057736 CCCTTCACAGAAGCATGTTCAAG 60.058 47.826 9.64 5.44 0.00 3.02
2211 2263 2.886523 CCCTTCACAGAAGCATGTTCAA 59.113 45.455 9.64 0.00 0.00 2.69
2212 2264 2.507484 CCCTTCACAGAAGCATGTTCA 58.493 47.619 9.64 0.00 0.00 3.18
2213 2265 1.815003 CCCCTTCACAGAAGCATGTTC 59.185 52.381 1.29 0.00 0.00 3.18
2214 2266 1.548582 CCCCCTTCACAGAAGCATGTT 60.549 52.381 1.29 0.00 0.00 2.71
2215 2267 0.038744 CCCCCTTCACAGAAGCATGT 59.961 55.000 1.29 0.00 0.00 3.21
2216 2268 2.877975 CCCCCTTCACAGAAGCATG 58.122 57.895 1.29 0.00 0.00 4.06
2231 2283 3.728385 AGCTTCTATATCATTGCCCCC 57.272 47.619 0.00 0.00 0.00 5.40
2232 2284 3.192212 GCAAGCTTCTATATCATTGCCCC 59.808 47.826 0.00 0.00 37.62 5.80
2233 2285 4.077822 AGCAAGCTTCTATATCATTGCCC 58.922 43.478 0.00 0.00 43.01 5.36
2234 2286 4.155644 GGAGCAAGCTTCTATATCATTGCC 59.844 45.833 0.00 0.00 43.01 4.52
2235 2287 4.155644 GGGAGCAAGCTTCTATATCATTGC 59.844 45.833 0.00 0.00 42.48 3.56
2236 2288 5.311265 TGGGAGCAAGCTTCTATATCATTG 58.689 41.667 0.00 0.00 0.00 2.82
2237 2289 5.573380 TGGGAGCAAGCTTCTATATCATT 57.427 39.130 0.00 0.00 0.00 2.57
2238 2290 5.309020 TCTTGGGAGCAAGCTTCTATATCAT 59.691 40.000 0.00 0.00 32.52 2.45
2239 2291 4.655649 TCTTGGGAGCAAGCTTCTATATCA 59.344 41.667 0.00 0.00 32.52 2.15
2240 2292 4.994217 GTCTTGGGAGCAAGCTTCTATATC 59.006 45.833 0.00 0.00 32.52 1.63
2241 2293 4.410228 TGTCTTGGGAGCAAGCTTCTATAT 59.590 41.667 0.00 0.00 32.52 0.86
2242 2294 3.774766 TGTCTTGGGAGCAAGCTTCTATA 59.225 43.478 0.00 0.00 32.52 1.31
2243 2295 2.573462 TGTCTTGGGAGCAAGCTTCTAT 59.427 45.455 0.00 0.00 32.52 1.98
2244 2296 1.977854 TGTCTTGGGAGCAAGCTTCTA 59.022 47.619 0.00 0.00 32.52 2.10
2245 2297 0.767375 TGTCTTGGGAGCAAGCTTCT 59.233 50.000 0.00 0.00 32.52 2.85
2246 2298 1.471684 CATGTCTTGGGAGCAAGCTTC 59.528 52.381 0.00 0.00 32.52 3.86
2247 2299 1.542492 CATGTCTTGGGAGCAAGCTT 58.458 50.000 0.00 0.00 32.52 3.74
2248 2300 0.964358 GCATGTCTTGGGAGCAAGCT 60.964 55.000 0.00 0.00 32.52 3.74
2249 2301 0.964358 AGCATGTCTTGGGAGCAAGC 60.964 55.000 0.00 0.00 32.52 4.01
2250 2302 1.542492 AAGCATGTCTTGGGAGCAAG 58.458 50.000 0.00 0.00 32.79 4.01
2251 2303 2.877097 TAAGCATGTCTTGGGAGCAA 57.123 45.000 11.24 0.00 36.25 3.91
2252 2304 3.370840 AATAAGCATGTCTTGGGAGCA 57.629 42.857 11.24 0.00 36.25 4.26
2253 2305 5.835113 TTTAATAAGCATGTCTTGGGAGC 57.165 39.130 11.24 0.00 36.25 4.70
2254 2306 9.125026 AGTATTTTAATAAGCATGTCTTGGGAG 57.875 33.333 11.24 0.00 36.25 4.30
2255 2307 9.120538 GAGTATTTTAATAAGCATGTCTTGGGA 57.879 33.333 11.24 0.00 36.25 4.37
2256 2308 8.352942 GGAGTATTTTAATAAGCATGTCTTGGG 58.647 37.037 11.24 0.00 36.25 4.12
2257 2309 8.070171 CGGAGTATTTTAATAAGCATGTCTTGG 58.930 37.037 11.24 0.00 36.25 3.61
2258 2310 8.826710 TCGGAGTATTTTAATAAGCATGTCTTG 58.173 33.333 11.24 0.00 36.25 3.02
2259 2311 8.958119 TCGGAGTATTTTAATAAGCATGTCTT 57.042 30.769 7.40 7.40 38.79 3.01
2264 2316 9.372369 GCTCTATCGGAGTATTTTAATAAGCAT 57.628 33.333 0.00 0.00 43.62 3.79
2265 2317 8.364894 TGCTCTATCGGAGTATTTTAATAAGCA 58.635 33.333 0.00 0.00 43.62 3.91
2266 2318 8.758633 TGCTCTATCGGAGTATTTTAATAAGC 57.241 34.615 0.00 0.00 43.62 3.09
2270 2322 9.593134 GATGATGCTCTATCGGAGTATTTTAAT 57.407 33.333 0.00 0.00 45.15 1.40
2271 2323 8.585018 TGATGATGCTCTATCGGAGTATTTTAA 58.415 33.333 0.00 0.00 45.15 1.52
2272 2324 8.122472 TGATGATGCTCTATCGGAGTATTTTA 57.878 34.615 0.00 0.00 45.15 1.52
2273 2325 6.997655 TGATGATGCTCTATCGGAGTATTTT 58.002 36.000 0.00 0.00 45.15 1.82
2274 2326 6.596309 TGATGATGCTCTATCGGAGTATTT 57.404 37.500 0.00 0.00 45.15 1.40
2275 2327 6.788598 ATGATGATGCTCTATCGGAGTATT 57.211 37.500 0.00 0.00 45.15 1.89
2277 2329 5.590663 GGTATGATGATGCTCTATCGGAGTA 59.409 44.000 0.00 0.00 43.62 2.59
2278 2330 4.400884 GGTATGATGATGCTCTATCGGAGT 59.599 45.833 0.00 0.00 43.62 3.85
2279 2331 4.644234 AGGTATGATGATGCTCTATCGGAG 59.356 45.833 0.00 0.00 44.49 4.63
2280 2332 4.604156 AGGTATGATGATGCTCTATCGGA 58.396 43.478 0.00 0.00 38.71 4.55
2281 2333 4.400567 TGAGGTATGATGATGCTCTATCGG 59.599 45.833 0.00 0.00 38.71 4.18
2282 2334 5.339177 GTGAGGTATGATGATGCTCTATCG 58.661 45.833 0.00 0.00 38.71 2.92
2283 2335 5.186603 TGGTGAGGTATGATGATGCTCTATC 59.813 44.000 0.00 0.00 36.29 2.08
2284 2336 5.089434 TGGTGAGGTATGATGATGCTCTAT 58.911 41.667 0.00 0.00 0.00 1.98
2285 2337 4.482990 TGGTGAGGTATGATGATGCTCTA 58.517 43.478 0.00 0.00 0.00 2.43
2286 2338 3.311990 TGGTGAGGTATGATGATGCTCT 58.688 45.455 0.00 0.00 0.00 4.09
2287 2339 3.323115 TCTGGTGAGGTATGATGATGCTC 59.677 47.826 0.00 0.00 0.00 4.26
2288 2340 3.311990 TCTGGTGAGGTATGATGATGCT 58.688 45.455 0.00 0.00 0.00 3.79
2289 2341 3.758755 TCTGGTGAGGTATGATGATGC 57.241 47.619 0.00 0.00 0.00 3.91
2290 2342 5.472478 CCAAATCTGGTGAGGTATGATGATG 59.528 44.000 0.00 0.00 38.00 3.07
2291 2343 5.370584 TCCAAATCTGGTGAGGTATGATGAT 59.629 40.000 0.00 0.00 43.97 2.45
2292 2344 4.721274 TCCAAATCTGGTGAGGTATGATGA 59.279 41.667 0.00 0.00 43.97 2.92
2293 2345 5.039920 TCCAAATCTGGTGAGGTATGATG 57.960 43.478 0.00 0.00 43.97 3.07
2294 2346 4.723789 ACTCCAAATCTGGTGAGGTATGAT 59.276 41.667 0.00 0.00 43.97 2.45
2295 2347 4.104086 ACTCCAAATCTGGTGAGGTATGA 58.896 43.478 0.00 0.00 43.97 2.15
2296 2348 4.494091 ACTCCAAATCTGGTGAGGTATG 57.506 45.455 0.00 0.00 43.97 2.39
2297 2349 6.831664 AATACTCCAAATCTGGTGAGGTAT 57.168 37.500 0.00 0.00 43.97 2.73
2298 2350 6.636454 AAATACTCCAAATCTGGTGAGGTA 57.364 37.500 0.00 0.00 43.97 3.08
2299 2351 5.520748 AAATACTCCAAATCTGGTGAGGT 57.479 39.130 0.00 0.00 43.97 3.85
2300 2352 5.393461 GCAAAATACTCCAAATCTGGTGAGG 60.393 44.000 0.00 0.00 43.97 3.86
2301 2353 5.416952 AGCAAAATACTCCAAATCTGGTGAG 59.583 40.000 0.00 0.00 43.97 3.51
2302 2354 5.183713 CAGCAAAATACTCCAAATCTGGTGA 59.816 40.000 0.00 0.00 43.97 4.02
2303 2355 5.047802 ACAGCAAAATACTCCAAATCTGGTG 60.048 40.000 0.00 0.00 43.97 4.17
2304 2356 5.047802 CACAGCAAAATACTCCAAATCTGGT 60.048 40.000 0.00 0.00 43.97 4.00
2305 2357 5.404946 CACAGCAAAATACTCCAAATCTGG 58.595 41.667 0.00 0.00 45.08 3.86
2306 2358 4.860907 GCACAGCAAAATACTCCAAATCTG 59.139 41.667 0.00 0.00 0.00 2.90
2307 2359 4.523943 TGCACAGCAAAATACTCCAAATCT 59.476 37.500 0.00 0.00 34.76 2.40
2308 2360 4.808558 TGCACAGCAAAATACTCCAAATC 58.191 39.130 0.00 0.00 34.76 2.17
2309 2361 4.870123 TGCACAGCAAAATACTCCAAAT 57.130 36.364 0.00 0.00 34.76 2.32
2310 2362 4.039004 ACATGCACAGCAAAATACTCCAAA 59.961 37.500 0.00 0.00 43.62 3.28
2311 2363 3.573538 ACATGCACAGCAAAATACTCCAA 59.426 39.130 0.00 0.00 43.62 3.53
2312 2364 3.057386 CACATGCACAGCAAAATACTCCA 60.057 43.478 0.00 0.00 43.62 3.86
2313 2365 3.057315 ACACATGCACAGCAAAATACTCC 60.057 43.478 0.00 0.00 43.62 3.85
2314 2366 3.916172 CACACATGCACAGCAAAATACTC 59.084 43.478 0.00 0.00 43.62 2.59
2315 2367 3.904571 CACACATGCACAGCAAAATACT 58.095 40.909 0.00 0.00 43.62 2.12
2329 2381 2.891112 ACTTTGTGGTTTGCACACATG 58.109 42.857 9.20 8.17 46.98 3.21
2330 2382 3.445450 TGTACTTTGTGGTTTGCACACAT 59.555 39.130 9.20 0.00 46.98 3.21
2331 2383 2.820197 TGTACTTTGTGGTTTGCACACA 59.180 40.909 5.20 4.89 46.22 3.72
2332 2384 3.495670 TGTACTTTGTGGTTTGCACAC 57.504 42.857 0.00 0.00 39.26 3.82
2333 2385 4.081972 ACATTGTACTTTGTGGTTTGCACA 60.082 37.500 0.00 0.00 0.00 4.57
2334 2386 4.267452 CACATTGTACTTTGTGGTTTGCAC 59.733 41.667 16.41 0.00 39.61 4.57
2335 2387 4.428209 CACATTGTACTTTGTGGTTTGCA 58.572 39.130 16.41 0.00 39.61 4.08
2336 2388 3.245048 GCACATTGTACTTTGTGGTTTGC 59.755 43.478 22.04 9.98 42.72 3.68
2341 2393 2.030007 CCCAGCACATTGTACTTTGTGG 60.030 50.000 22.04 11.34 42.72 4.17
2342 2394 2.884012 TCCCAGCACATTGTACTTTGTG 59.116 45.455 18.64 18.64 44.75 3.33
2343 2395 3.149196 CTCCCAGCACATTGTACTTTGT 58.851 45.455 0.00 0.00 0.00 2.83
2344 2396 2.095059 GCTCCCAGCACATTGTACTTTG 60.095 50.000 0.00 0.00 41.89 2.77
2345 2397 2.162681 GCTCCCAGCACATTGTACTTT 58.837 47.619 0.00 0.00 41.89 2.66
2346 2398 1.614317 GGCTCCCAGCACATTGTACTT 60.614 52.381 0.00 0.00 44.75 2.24
2347 2399 0.035056 GGCTCCCAGCACATTGTACT 60.035 55.000 0.00 0.00 44.75 2.73
2348 2400 1.032114 GGGCTCCCAGCACATTGTAC 61.032 60.000 0.00 0.00 45.95 2.90
2349 2401 1.302949 GGGCTCCCAGCACATTGTA 59.697 57.895 0.00 0.00 45.95 2.41
2350 2402 2.036256 GGGCTCCCAGCACATTGT 59.964 61.111 0.00 0.00 45.95 2.71
2360 2412 0.106015 AATGTATTGCTGGGGCTCCC 60.106 55.000 0.00 0.72 45.71 4.30
2361 2413 1.780503 AAATGTATTGCTGGGGCTCC 58.219 50.000 0.00 0.00 39.59 4.70
2362 2414 3.954258 ACTTAAATGTATTGCTGGGGCTC 59.046 43.478 0.00 0.00 39.59 4.70
2363 2415 3.981212 ACTTAAATGTATTGCTGGGGCT 58.019 40.909 0.00 0.00 39.59 5.19
2364 2416 4.432712 CAACTTAAATGTATTGCTGGGGC 58.567 43.478 0.00 0.00 39.26 5.80
2365 2417 4.081752 TGCAACTTAAATGTATTGCTGGGG 60.082 41.667 9.02 0.00 46.06 4.96
2366 2418 4.864247 GTGCAACTTAAATGTATTGCTGGG 59.136 41.667 9.02 0.00 46.06 4.45
2367 2419 5.468592 TGTGCAACTTAAATGTATTGCTGG 58.531 37.500 9.02 0.00 46.06 4.85
2368 2420 6.151691 ACTGTGCAACTTAAATGTATTGCTG 58.848 36.000 9.02 2.99 46.06 4.41
2369 2421 6.331369 ACTGTGCAACTTAAATGTATTGCT 57.669 33.333 9.02 0.00 46.06 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.