Multiple sequence alignment - TraesCS7D01G484600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G484600 chr7D 100.000 2987 0 0 1 2987 595068036 595071022 0.000000e+00 5517.0
1 TraesCS7D01G484600 chr7D 80.851 329 63 0 1222 1550 501116276 501116604 2.950000e-65 259.0
2 TraesCS7D01G484600 chr7A 91.776 1143 38 20 497 1633 688180925 688182017 0.000000e+00 1539.0
3 TraesCS7D01G484600 chr7A 94.664 506 26 1 1639 2144 688183536 688184040 0.000000e+00 784.0
4 TraesCS7D01G484600 chr7A 92.816 515 27 4 2134 2642 688184168 688184678 0.000000e+00 737.0
5 TraesCS7D01G484600 chr7A 93.916 263 11 3 242 502 688180643 688180902 2.790000e-105 392.0
6 TraesCS7D01G484600 chr7A 97.159 176 5 0 2637 2812 688184703 688184878 6.260000e-77 298.0
7 TraesCS7D01G484600 chr7A 83.168 101 16 1 584 684 1323008 1322909 1.140000e-14 91.6
8 TraesCS7D01G484600 chrUn 98.857 175 2 0 2813 2987 216507480 216507306 2.240000e-81 313.0
9 TraesCS7D01G484600 chrUn 98.857 175 2 0 2813 2987 388831853 388831679 2.240000e-81 313.0
10 TraesCS7D01G484600 chrUn 98.857 175 2 0 2813 2987 441243840 441243666 2.240000e-81 313.0
11 TraesCS7D01G484600 chr7B 98.857 175 2 0 2813 2987 662725042 662725216 2.240000e-81 313.0
12 TraesCS7D01G484600 chr7B 98.857 175 2 0 2813 2987 663100787 663100613 2.240000e-81 313.0
13 TraesCS7D01G484600 chr7B 88.636 176 17 1 2637 2812 672653443 672653615 8.390000e-51 211.0
14 TraesCS7D01G484600 chr7B 91.304 92 8 0 375 466 672652928 672653019 3.130000e-25 126.0
15 TraesCS7D01G484600 chr7B 92.941 85 2 4 769 852 672653052 672653133 1.450000e-23 121.0
16 TraesCS7D01G484600 chr5D 98.857 175 2 0 2813 2987 503243910 503244084 2.240000e-81 313.0
17 TraesCS7D01G484600 chr5D 98.857 175 2 0 2813 2987 503266665 503266491 2.240000e-81 313.0
18 TraesCS7D01G484600 chr3A 98.857 175 2 0 2813 2987 672898883 672898709 2.240000e-81 313.0
19 TraesCS7D01G484600 chr1D 98.857 175 2 0 2813 2987 176208377 176208551 2.240000e-81 313.0
20 TraesCS7D01G484600 chr4D 81.081 333 59 3 1221 1551 414328436 414328106 2.280000e-66 263.0
21 TraesCS7D01G484600 chr4D 78.338 337 71 2 1220 1555 414336989 414336654 1.800000e-52 217.0
22 TraesCS7D01G484600 chr4D 78.042 337 72 2 1220 1555 414365364 414365029 8.390000e-51 211.0
23 TraesCS7D01G484600 chr4D 80.000 145 20 8 1011 1149 414365600 414365459 6.810000e-17 99.0
24 TraesCS7D01G484600 chr4D 83.838 99 12 3 1053 1149 414359350 414359254 1.140000e-14 91.6
25 TraesCS7D01G484600 chr4D 81.982 111 13 5 1041 1149 414337189 414337084 1.480000e-13 87.9
26 TraesCS7D01G484600 chr4B 80.480 333 63 2 1220 1551 510434781 510434450 1.370000e-63 254.0
27 TraesCS7D01G484600 chr4B 78.979 333 68 2 1220 1551 510562434 510562103 3.000000e-55 226.0
28 TraesCS7D01G484600 chr4B 80.000 145 20 8 1011 1149 510562669 510562528 6.810000e-17 99.0
29 TraesCS7D01G484600 chr4A 80.480 333 63 2 1214 1545 49200034 49200365 1.370000e-63 254.0
30 TraesCS7D01G484600 chr4A 80.645 279 52 2 1275 1552 49040341 49040618 6.480000e-52 215.0
31 TraesCS7D01G484600 chr4A 80.380 158 20 10 1011 1161 49199799 49199952 3.150000e-20 110.0
32 TraesCS7D01G484600 chr5A 88.732 71 8 0 588 658 60520501 60520571 1.480000e-13 87.9
33 TraesCS7D01G484600 chr3B 91.525 59 5 0 1091 1149 25870585 25870643 6.860000e-12 82.4
34 TraesCS7D01G484600 chr3B 91.525 59 5 0 1091 1149 26003633 26003691 6.860000e-12 82.4
35 TraesCS7D01G484600 chr3B 91.525 59 5 0 1091 1149 26043537 26043595 6.860000e-12 82.4
36 TraesCS7D01G484600 chr6D 100.000 28 0 0 331 358 263462538 263462511 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G484600 chr7D 595068036 595071022 2986 False 5517 5517 100.0000 1 2987 1 chr7D.!!$F2 2986
1 TraesCS7D01G484600 chr7A 688180643 688184878 4235 False 750 1539 94.0662 242 2812 5 chr7A.!!$F1 2570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.030235 AACCGAAAAAGGCAACGAGC 59.970 50.0 0.0 0.0 46.39 5.03 F
184 185 0.179073 GATGTGCATAGTCCCGTGCT 60.179 55.0 0.0 0.0 41.78 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 3221 0.804989 GTTTCTCGCATGGAACCCTG 59.195 55.0 0.0 0.0 0.00 4.45 R
2166 3854 0.108615 CGAGTCCGAGCAACCTTCAT 60.109 55.0 0.0 0.0 38.22 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.231734 TGTTTGGAGGAGCATCACG 57.768 52.632 0.00 0.00 36.25 4.35
19 20 0.955428 TGTTTGGAGGAGCATCACGC 60.955 55.000 0.00 0.00 42.91 5.34
31 32 3.505449 GCATCACGCTAATCCGTTTAG 57.495 47.619 0.00 0.00 39.83 1.85
42 43 4.531659 AATCCGTTTAGCGTCATTTAGC 57.468 40.909 0.00 0.00 39.32 3.09
43 44 1.921887 TCCGTTTAGCGTCATTTAGCG 59.078 47.619 0.00 0.00 39.32 4.26
44 45 1.657094 CCGTTTAGCGTCATTTAGCGT 59.343 47.619 0.00 0.00 39.32 5.07
45 46 2.534150 CCGTTTAGCGTCATTTAGCGTG 60.534 50.000 0.00 0.00 39.32 5.34
46 47 2.428114 GTTTAGCGTCATTTAGCGTGC 58.572 47.619 0.00 0.00 38.61 5.34
47 48 2.004583 TTAGCGTCATTTAGCGTGCT 57.995 45.000 0.00 0.00 38.61 4.40
48 49 2.855660 TAGCGTCATTTAGCGTGCTA 57.144 45.000 0.00 0.00 38.61 3.49
49 50 2.225068 AGCGTCATTTAGCGTGCTAT 57.775 45.000 1.86 0.00 38.61 2.97
50 51 3.364889 AGCGTCATTTAGCGTGCTATA 57.635 42.857 1.86 0.00 38.61 1.31
51 52 3.309388 AGCGTCATTTAGCGTGCTATAG 58.691 45.455 1.86 0.00 38.61 1.31
52 53 3.050619 GCGTCATTTAGCGTGCTATAGT 58.949 45.455 1.86 0.00 0.00 2.12
53 54 3.121328 GCGTCATTTAGCGTGCTATAGTG 60.121 47.826 1.86 2.95 0.00 2.74
54 55 3.121328 CGTCATTTAGCGTGCTATAGTGC 60.121 47.826 1.86 3.82 0.00 4.40
55 56 3.802139 GTCATTTAGCGTGCTATAGTGCA 59.198 43.478 13.66 0.30 41.05 4.57
56 57 4.270084 GTCATTTAGCGTGCTATAGTGCAA 59.730 41.667 13.66 0.00 45.12 4.08
57 58 5.050091 GTCATTTAGCGTGCTATAGTGCAAT 60.050 40.000 13.66 0.00 45.12 3.56
58 59 5.527214 TCATTTAGCGTGCTATAGTGCAATT 59.473 36.000 13.66 0.00 45.12 2.32
59 60 5.811399 TTTAGCGTGCTATAGTGCAATTT 57.189 34.783 13.66 0.00 45.12 1.82
60 61 6.912203 TTTAGCGTGCTATAGTGCAATTTA 57.088 33.333 13.66 0.00 45.12 1.40
61 62 6.525121 TTAGCGTGCTATAGTGCAATTTAG 57.475 37.500 7.20 7.20 45.12 1.85
62 63 3.248602 AGCGTGCTATAGTGCAATTTAGC 59.751 43.478 23.88 23.88 45.12 3.09
63 64 3.787826 CGTGCTATAGTGCAATTTAGCG 58.212 45.455 24.54 12.49 45.12 4.26
64 65 3.245284 CGTGCTATAGTGCAATTTAGCGT 59.755 43.478 24.54 0.00 45.12 5.07
65 66 4.260212 CGTGCTATAGTGCAATTTAGCGTT 60.260 41.667 24.54 0.00 45.12 4.84
66 67 4.963953 GTGCTATAGTGCAATTTAGCGTTG 59.036 41.667 24.54 0.00 45.12 4.10
73 74 2.731217 GCAATTTAGCGTTGCCATAGG 58.269 47.619 7.60 0.00 44.65 2.57
126 127 9.843334 ACTAAATATTATTTGCGAAACCGAAAA 57.157 25.926 11.16 0.00 38.76 2.29
129 130 7.749539 ATATTATTTGCGAAACCGAAAAAGG 57.250 32.000 0.00 0.00 38.01 3.11
130 131 1.562017 TTTGCGAAACCGAAAAAGGC 58.438 45.000 0.00 0.00 32.10 4.35
131 132 0.456221 TTGCGAAACCGAAAAAGGCA 59.544 45.000 0.00 0.00 33.69 4.75
132 133 0.456221 TGCGAAACCGAAAAAGGCAA 59.544 45.000 0.00 0.00 33.69 4.52
133 134 0.850217 GCGAAACCGAAAAAGGCAAC 59.150 50.000 0.00 0.00 33.69 4.17
134 135 1.117234 CGAAACCGAAAAAGGCAACG 58.883 50.000 0.00 0.00 46.39 4.10
135 136 1.268133 CGAAACCGAAAAAGGCAACGA 60.268 47.619 0.00 0.00 46.39 3.85
136 137 2.381589 GAAACCGAAAAAGGCAACGAG 58.618 47.619 0.00 0.00 46.39 4.18
137 138 0.030235 AACCGAAAAAGGCAACGAGC 59.970 50.000 0.00 0.00 46.39 5.03
148 149 2.193306 GCAACGAGCATAATTGTGGG 57.807 50.000 4.23 0.00 44.79 4.61
149 150 1.472480 GCAACGAGCATAATTGTGGGT 59.528 47.619 4.23 0.00 44.79 4.51
150 151 2.094752 GCAACGAGCATAATTGTGGGTT 60.095 45.455 4.23 0.00 44.79 4.11
151 152 3.500982 CAACGAGCATAATTGTGGGTTG 58.499 45.455 4.23 0.46 0.00 3.77
152 153 2.091541 ACGAGCATAATTGTGGGTTGG 58.908 47.619 4.23 0.00 0.00 3.77
153 154 2.290641 ACGAGCATAATTGTGGGTTGGA 60.291 45.455 4.23 0.00 0.00 3.53
154 155 2.097466 CGAGCATAATTGTGGGTTGGAC 59.903 50.000 4.23 0.00 0.00 4.02
155 156 3.088532 GAGCATAATTGTGGGTTGGACA 58.911 45.455 4.23 0.00 0.00 4.02
156 157 3.701040 GAGCATAATTGTGGGTTGGACAT 59.299 43.478 4.23 0.00 0.00 3.06
157 158 4.865905 AGCATAATTGTGGGTTGGACATA 58.134 39.130 4.23 0.00 0.00 2.29
158 159 5.268387 AGCATAATTGTGGGTTGGACATAA 58.732 37.500 4.23 0.00 0.00 1.90
159 160 5.898972 AGCATAATTGTGGGTTGGACATAAT 59.101 36.000 4.23 0.00 32.10 1.28
160 161 7.066142 AGCATAATTGTGGGTTGGACATAATA 58.934 34.615 4.23 0.00 30.85 0.98
161 162 7.014230 AGCATAATTGTGGGTTGGACATAATAC 59.986 37.037 4.23 0.00 30.85 1.89
162 163 5.828299 AATTGTGGGTTGGACATAATACG 57.172 39.130 0.00 0.00 30.85 3.06
163 164 4.554960 TTGTGGGTTGGACATAATACGA 57.445 40.909 0.00 0.00 0.00 3.43
164 165 4.764050 TGTGGGTTGGACATAATACGAT 57.236 40.909 0.00 0.00 0.00 3.73
165 166 4.447290 TGTGGGTTGGACATAATACGATG 58.553 43.478 0.00 0.00 0.00 3.84
166 167 4.162509 TGTGGGTTGGACATAATACGATGA 59.837 41.667 0.00 0.00 0.00 2.92
167 168 5.163248 TGTGGGTTGGACATAATACGATGAT 60.163 40.000 0.00 0.00 0.00 2.45
168 169 5.179368 GTGGGTTGGACATAATACGATGATG 59.821 44.000 0.00 0.00 0.00 3.07
169 170 5.163248 TGGGTTGGACATAATACGATGATGT 60.163 40.000 0.00 0.00 36.52 3.06
170 171 5.179368 GGGTTGGACATAATACGATGATGTG 59.821 44.000 0.00 0.00 33.99 3.21
171 172 5.334105 GGTTGGACATAATACGATGATGTGC 60.334 44.000 8.78 8.78 40.97 4.57
172 173 4.954875 TGGACATAATACGATGATGTGCA 58.045 39.130 12.36 12.36 45.84 4.57
173 174 5.550290 TGGACATAATACGATGATGTGCAT 58.450 37.500 12.36 0.00 44.01 3.96
174 175 6.696411 TGGACATAATACGATGATGTGCATA 58.304 36.000 12.36 0.00 44.01 3.14
175 176 6.813152 TGGACATAATACGATGATGTGCATAG 59.187 38.462 12.36 0.00 44.01 2.23
176 177 6.813649 GGACATAATACGATGATGTGCATAGT 59.186 38.462 10.10 0.00 43.82 2.12
177 178 7.009631 GGACATAATACGATGATGTGCATAGTC 59.990 40.741 10.10 0.00 41.18 2.59
178 179 6.813649 ACATAATACGATGATGTGCATAGTCC 59.186 38.462 0.00 0.00 41.18 3.85
179 180 2.533266 ACGATGATGTGCATAGTCCC 57.467 50.000 0.00 0.00 38.25 4.46
180 181 1.269778 ACGATGATGTGCATAGTCCCG 60.270 52.381 0.00 0.00 38.25 5.14
181 182 1.269778 CGATGATGTGCATAGTCCCGT 60.270 52.381 0.00 0.00 37.34 5.28
182 183 2.138320 GATGATGTGCATAGTCCCGTG 58.862 52.381 0.00 0.00 37.34 4.94
183 184 0.461870 TGATGTGCATAGTCCCGTGC 60.462 55.000 0.00 0.00 41.61 5.34
184 185 0.179073 GATGTGCATAGTCCCGTGCT 60.179 55.000 0.00 0.00 41.78 4.40
185 186 0.253044 ATGTGCATAGTCCCGTGCTT 59.747 50.000 0.00 0.00 41.78 3.91
186 187 0.673333 TGTGCATAGTCCCGTGCTTG 60.673 55.000 0.00 0.00 41.78 4.01
187 188 0.391130 GTGCATAGTCCCGTGCTTGA 60.391 55.000 0.00 0.00 41.78 3.02
188 189 0.323302 TGCATAGTCCCGTGCTTGAA 59.677 50.000 0.00 0.00 41.78 2.69
189 190 1.271108 TGCATAGTCCCGTGCTTGAAA 60.271 47.619 0.00 0.00 41.78 2.69
190 191 1.810151 GCATAGTCCCGTGCTTGAAAA 59.190 47.619 0.00 0.00 38.30 2.29
192 193 2.178912 TAGTCCCGTGCTTGAAAAGG 57.821 50.000 0.00 0.00 46.35 3.11
193 194 0.472471 AGTCCCGTGCTTGAAAAGGA 59.528 50.000 0.00 0.00 46.35 3.36
202 203 3.129871 TGCTTGAAAAGGAAAAATGGCG 58.870 40.909 0.00 0.00 43.05 5.69
203 204 3.130633 GCTTGAAAAGGAAAAATGGCGT 58.869 40.909 0.00 0.00 46.35 5.68
204 205 4.202161 TGCTTGAAAAGGAAAAATGGCGTA 60.202 37.500 0.00 0.00 43.05 4.42
205 206 4.929211 GCTTGAAAAGGAAAAATGGCGTAT 59.071 37.500 0.00 0.00 46.35 3.06
206 207 5.163963 GCTTGAAAAGGAAAAATGGCGTATG 60.164 40.000 0.00 0.00 46.35 2.39
207 208 5.713792 TGAAAAGGAAAAATGGCGTATGA 57.286 34.783 0.00 0.00 0.00 2.15
208 209 6.090483 TGAAAAGGAAAAATGGCGTATGAA 57.910 33.333 0.00 0.00 0.00 2.57
209 210 6.696411 TGAAAAGGAAAAATGGCGTATGAAT 58.304 32.000 0.00 0.00 0.00 2.57
210 211 7.158021 TGAAAAGGAAAAATGGCGTATGAATT 58.842 30.769 0.00 0.00 0.00 2.17
211 212 7.659390 TGAAAAGGAAAAATGGCGTATGAATTT 59.341 29.630 0.00 0.00 0.00 1.82
212 213 9.145865 GAAAAGGAAAAATGGCGTATGAATTTA 57.854 29.630 0.00 0.00 0.00 1.40
213 214 9.665719 AAAAGGAAAAATGGCGTATGAATTTAT 57.334 25.926 0.00 0.00 0.00 1.40
214 215 9.665719 AAAGGAAAAATGGCGTATGAATTTATT 57.334 25.926 0.00 0.00 0.00 1.40
215 216 9.665719 AAGGAAAAATGGCGTATGAATTTATTT 57.334 25.926 0.00 0.00 0.00 1.40
300 301 3.011760 CTTTCCGGACGAACTGCGC 62.012 63.158 1.83 0.00 46.04 6.09
350 351 3.405831 CAGTGCAGGATCAAGAAACAGA 58.594 45.455 0.00 0.00 0.00 3.41
357 358 2.026822 GGATCAAGAAACAGAGGAGGCA 60.027 50.000 0.00 0.00 0.00 4.75
431 432 0.603975 GTCAAGCAAACGCCCTCTCT 60.604 55.000 0.00 0.00 0.00 3.10
437 438 1.134670 GCAAACGCCCTCTCTGATAGT 60.135 52.381 0.00 0.00 0.00 2.12
440 443 2.373335 ACGCCCTCTCTGATAGTGAT 57.627 50.000 0.00 0.00 0.00 3.06
456 459 9.979270 CTGATAGTGATACTGAAAAATGTCAAC 57.021 33.333 0.00 0.00 0.00 3.18
479 482 6.432607 CCAAAGACTGGCATGCATATATAG 57.567 41.667 21.36 9.52 38.76 1.31
480 483 5.163683 CCAAAGACTGGCATGCATATATAGC 60.164 44.000 21.36 0.00 38.76 2.97
481 484 5.432680 AAGACTGGCATGCATATATAGCT 57.567 39.130 21.36 2.32 0.00 3.32
482 485 5.432680 AGACTGGCATGCATATATAGCTT 57.567 39.130 21.36 0.00 0.00 3.74
485 488 6.820656 AGACTGGCATGCATATATAGCTTAAC 59.179 38.462 21.36 0.00 0.00 2.01
513 545 1.006832 CGACCGCCAATAGAAACAGG 58.993 55.000 0.00 0.00 0.00 4.00
544 576 3.795877 CCATTTGGTCAAACAAGCAACT 58.204 40.909 0.00 0.00 36.45 3.16
559 591 1.892474 GCAACTTGCCCATCCAACTTA 59.108 47.619 1.95 0.00 37.42 2.24
562 594 3.525800 ACTTGCCCATCCAACTTAGTT 57.474 42.857 0.00 0.00 0.00 2.24
577 609 8.215050 TCCAACTTAGTTGTCAAAGGATAGAAA 58.785 33.333 21.63 0.00 41.41 2.52
634 667 1.098050 AGCAAATGAGCCGATGAACC 58.902 50.000 0.00 0.00 34.23 3.62
635 668 0.810648 GCAAATGAGCCGATGAACCA 59.189 50.000 0.00 0.00 0.00 3.67
680 713 2.818274 GGCGATGTCACCGGTTCC 60.818 66.667 2.97 0.00 0.00 3.62
761 795 4.910956 TGCGGATGTGCACTCTAC 57.089 55.556 19.41 5.25 40.62 2.59
762 796 1.218047 TGCGGATGTGCACTCTACC 59.782 57.895 19.41 13.97 40.62 3.18
763 797 1.878522 GCGGATGTGCACTCTACCG 60.879 63.158 26.59 26.59 42.63 4.02
764 798 1.226974 CGGATGTGCACTCTACCGG 60.227 63.158 24.74 0.00 37.28 5.28
765 799 1.521681 GGATGTGCACTCTACCGGC 60.522 63.158 19.41 0.00 0.00 6.13
766 800 1.517832 GATGTGCACTCTACCGGCT 59.482 57.895 19.41 0.00 0.00 5.52
767 801 0.807667 GATGTGCACTCTACCGGCTG 60.808 60.000 19.41 0.00 0.00 4.85
768 802 2.815647 GTGCACTCTACCGGCTGC 60.816 66.667 10.32 1.08 0.00 5.25
860 894 7.109501 TGGTTATATATACATCCGCAAGCATT 58.890 34.615 0.00 0.00 0.00 3.56
869 903 4.094887 ACATCCGCAAGCATTAGTTACAAG 59.905 41.667 0.00 0.00 0.00 3.16
870 904 3.932822 TCCGCAAGCATTAGTTACAAGA 58.067 40.909 0.00 0.00 0.00 3.02
871 905 4.513442 TCCGCAAGCATTAGTTACAAGAT 58.487 39.130 0.00 0.00 0.00 2.40
872 906 4.570772 TCCGCAAGCATTAGTTACAAGATC 59.429 41.667 0.00 0.00 0.00 2.75
873 907 4.260784 CCGCAAGCATTAGTTACAAGATCC 60.261 45.833 0.00 0.00 0.00 3.36
874 908 4.572389 CGCAAGCATTAGTTACAAGATCCT 59.428 41.667 0.00 0.00 0.00 3.24
875 909 5.277058 CGCAAGCATTAGTTACAAGATCCTC 60.277 44.000 0.00 0.00 0.00 3.71
895 929 2.435805 TCCATCACCCATCAGCTTAGAC 59.564 50.000 0.00 0.00 0.00 2.59
912 946 2.839228 AGACCTAGAAGCCAATCCACT 58.161 47.619 0.00 0.00 0.00 4.00
926 960 2.529780 TCCACTTGCATTTTTGCCAG 57.470 45.000 0.00 0.00 34.24 4.85
967 1001 1.186200 TACAGACGCAGCAGGATTCT 58.814 50.000 0.00 0.00 0.00 2.40
999 1033 3.063180 CCGACGACCGAGATATATACACC 59.937 52.174 0.00 0.00 41.76 4.16
1028 1062 4.828925 GGCTCCAGCTCGAGGTGC 62.829 72.222 33.72 24.22 43.13 5.01
1209 1246 6.670077 TGTGCAAATTATCACAGCGTATAA 57.330 33.333 8.18 0.00 38.18 0.98
1360 1397 1.069090 GACCGTGAACTGGCAGACA 59.931 57.895 23.66 17.26 0.00 3.41
1364 1401 2.661537 TGAACTGGCAGACACGCG 60.662 61.111 23.66 3.53 0.00 6.01
1509 1546 1.524849 GGCTTGGGAGAAGATCGGC 60.525 63.158 0.00 0.00 0.00 5.54
1549 1586 0.323629 CCCTGTCATGTACCAACGGT 59.676 55.000 0.00 0.00 40.16 4.83
1565 1602 5.238214 ACCAACGGTAATTAAGCACGTTAAA 59.762 36.000 14.14 0.00 44.73 1.52
1701 3251 2.434359 GAGAAACGGGGCGGAGTG 60.434 66.667 0.00 0.00 0.00 3.51
1714 3264 1.413767 CGGAGTGCGGTTCAAGATCG 61.414 60.000 0.00 0.00 0.00 3.69
1742 3292 3.990469 CACGACTACTTCAATCTTGTGCT 59.010 43.478 0.00 0.00 0.00 4.40
1867 3417 1.000955 AGTCACTAGCAAACCTCACGG 59.999 52.381 0.00 0.00 0.00 4.94
1890 3440 5.451520 GGGGAAGATGCTTTCATTCAGATTG 60.452 44.000 0.00 0.00 31.96 2.67
1896 3446 3.436704 TGCTTTCATTCAGATTGACCGAC 59.563 43.478 0.00 0.00 0.00 4.79
1899 3449 3.961480 TCATTCAGATTGACCGACACT 57.039 42.857 0.00 0.00 0.00 3.55
1926 3476 3.356290 GCAGACCCTTGTGTTCCATAAT 58.644 45.455 0.00 0.00 0.00 1.28
1934 3484 5.236478 CCCTTGTGTTCCATAATATCGTGTC 59.764 44.000 0.00 0.00 0.00 3.67
1950 3500 2.767505 GTGTCGAGTGGATGGAAGTTT 58.232 47.619 0.00 0.00 0.00 2.66
1952 3502 2.076863 GTCGAGTGGATGGAAGTTTGG 58.923 52.381 0.00 0.00 0.00 3.28
2006 3556 3.563390 TGAGCACACTCTAGAGATCATCG 59.437 47.826 26.57 8.95 43.85 3.84
2025 3575 2.938451 TCGGCATTTCATTCTAGTGCAG 59.062 45.455 0.00 0.00 37.53 4.41
2082 3632 3.009033 AGGCTTGTACTACTGAAATGGCA 59.991 43.478 0.00 0.00 0.00 4.92
2083 3633 3.756434 GGCTTGTACTACTGAAATGGCAA 59.244 43.478 0.00 0.00 0.00 4.52
2091 3641 6.892658 ACTACTGAAATGGCAAAATGTACA 57.107 33.333 0.00 0.00 0.00 2.90
2119 3669 8.614469 TGTGTGTTCATGATTATGACTAACAA 57.386 30.769 0.00 0.00 42.79 2.83
2185 3873 0.108615 ATGAAGGTTGCTCGGACTCG 60.109 55.000 0.00 0.00 37.82 4.18
2197 3885 3.737047 GCTCGGACTCGATTCAATGGTTA 60.737 47.826 5.06 0.00 45.04 2.85
2212 3900 3.500448 TGGTTATTGGAGTGTCAAGCA 57.500 42.857 0.00 0.00 0.00 3.91
2246 3934 1.985159 TGTAAGGGCATCTCCAACAGT 59.015 47.619 0.00 0.00 36.21 3.55
2247 3935 2.290260 TGTAAGGGCATCTCCAACAGTG 60.290 50.000 0.00 0.00 36.21 3.66
2265 3953 2.069273 GTGACCCACAAATCAGACTCG 58.931 52.381 0.00 0.00 34.08 4.18
2277 3965 0.387878 CAGACTCGCTATCCATCCGC 60.388 60.000 0.00 0.00 0.00 5.54
2285 3973 0.319040 CTATCCATCCGCGGACACAG 60.319 60.000 33.75 20.07 38.07 3.66
2290 3978 0.934901 CATCCGCGGACACAGATACG 60.935 60.000 33.75 6.48 0.00 3.06
2291 3979 2.071844 ATCCGCGGACACAGATACGG 62.072 60.000 33.75 0.00 41.92 4.02
2293 3981 1.138036 CGCGGACACAGATACGGAA 59.862 57.895 0.00 0.00 0.00 4.30
2294 3982 0.866061 CGCGGACACAGATACGGAAG 60.866 60.000 0.00 0.00 0.00 3.46
2310 4002 2.811504 CGGAAGCATGCCATTCCATCTA 60.812 50.000 28.47 0.00 44.39 1.98
2349 4041 8.062065 TCTTTAAAGTCCACAACACTCAAAAT 57.938 30.769 14.74 0.00 0.00 1.82
2416 4110 2.791655 CAACACTAAGAACCCTTCCCC 58.208 52.381 0.00 0.00 33.94 4.81
2460 4154 9.189156 CTAAAATTCACCCTAAGAATCCATTCA 57.811 33.333 2.21 0.00 39.23 2.57
2486 4180 6.634805 TGTTGAAGAAGTTTGCCAAACATTA 58.365 32.000 21.45 0.37 43.79 1.90
2599 4293 9.781834 CTAACATCTAAATATTTTGTCCGCAAA 57.218 29.630 5.91 0.00 42.25 3.68
2664 4388 1.985473 AACATCAGCTCTGCCAACAA 58.015 45.000 0.00 0.00 0.00 2.83
2755 4479 4.574674 AGGGCTCACATGTAAAGATGAA 57.425 40.909 10.75 0.00 0.00 2.57
2799 4523 1.128200 ACTGACCAAGCACACCACTA 58.872 50.000 0.00 0.00 0.00 2.74
2812 4536 4.174009 CACACCACTAACTATTCTCACCG 58.826 47.826 0.00 0.00 0.00 4.94
2813 4537 3.830755 ACACCACTAACTATTCTCACCGT 59.169 43.478 0.00 0.00 0.00 4.83
2814 4538 4.174009 CACCACTAACTATTCTCACCGTG 58.826 47.826 0.00 0.00 0.00 4.94
2815 4539 3.830755 ACCACTAACTATTCTCACCGTGT 59.169 43.478 0.00 0.00 0.00 4.49
2816 4540 4.282703 ACCACTAACTATTCTCACCGTGTT 59.717 41.667 0.00 0.00 0.00 3.32
2817 4541 4.625742 CCACTAACTATTCTCACCGTGTTG 59.374 45.833 0.00 0.00 0.00 3.33
2818 4542 4.625742 CACTAACTATTCTCACCGTGTTGG 59.374 45.833 0.00 0.00 46.41 3.77
2819 4543 2.762535 ACTATTCTCACCGTGTTGGG 57.237 50.000 0.00 0.00 44.64 4.12
2820 4544 1.975680 ACTATTCTCACCGTGTTGGGT 59.024 47.619 0.00 0.00 44.64 4.51
2821 4545 2.370849 ACTATTCTCACCGTGTTGGGTT 59.629 45.455 0.00 0.00 44.64 4.11
2822 4546 3.579586 ACTATTCTCACCGTGTTGGGTTA 59.420 43.478 0.00 0.00 44.64 2.85
2823 4547 3.495434 ATTCTCACCGTGTTGGGTTAA 57.505 42.857 0.00 0.00 44.64 2.01
2824 4548 2.536761 TCTCACCGTGTTGGGTTAAG 57.463 50.000 0.00 0.00 44.64 1.85
2825 4549 1.764134 TCTCACCGTGTTGGGTTAAGT 59.236 47.619 0.00 0.00 44.64 2.24
2826 4550 2.140717 CTCACCGTGTTGGGTTAAGTC 58.859 52.381 0.00 0.00 44.64 3.01
2827 4551 1.764134 TCACCGTGTTGGGTTAAGTCT 59.236 47.619 0.00 0.00 44.64 3.24
2828 4552 2.171027 TCACCGTGTTGGGTTAAGTCTT 59.829 45.455 0.00 0.00 44.64 3.01
2829 4553 2.289547 CACCGTGTTGGGTTAAGTCTTG 59.710 50.000 0.00 0.00 44.64 3.02
2830 4554 1.265905 CCGTGTTGGGTTAAGTCTTGC 59.734 52.381 0.00 0.00 0.00 4.01
2831 4555 1.944024 CGTGTTGGGTTAAGTCTTGCA 59.056 47.619 0.00 0.00 0.00 4.08
2832 4556 2.356382 CGTGTTGGGTTAAGTCTTGCAA 59.644 45.455 0.00 0.00 0.00 4.08
2833 4557 3.702330 GTGTTGGGTTAAGTCTTGCAAC 58.298 45.455 0.00 0.00 0.00 4.17
2834 4558 2.356382 TGTTGGGTTAAGTCTTGCAACG 59.644 45.455 0.00 0.00 0.00 4.10
2835 4559 2.614983 GTTGGGTTAAGTCTTGCAACGA 59.385 45.455 0.00 0.00 0.00 3.85
2836 4560 2.489971 TGGGTTAAGTCTTGCAACGAG 58.510 47.619 0.00 0.00 0.00 4.18
2837 4561 1.197036 GGGTTAAGTCTTGCAACGAGC 59.803 52.381 0.00 0.00 45.96 5.03
2846 4570 4.090057 GCAACGAGCGCAACCCTC 62.090 66.667 11.47 0.00 0.00 4.30
2851 4575 2.665185 GAGCGCAACCCTCGTGTT 60.665 61.111 11.47 0.00 0.00 3.32
2852 4576 2.203153 AGCGCAACCCTCGTGTTT 60.203 55.556 11.47 0.00 0.00 2.83
2853 4577 0.947180 GAGCGCAACCCTCGTGTTTA 60.947 55.000 11.47 0.00 0.00 2.01
2854 4578 0.949105 AGCGCAACCCTCGTGTTTAG 60.949 55.000 11.47 0.00 0.00 1.85
2855 4579 1.226030 GCGCAACCCTCGTGTTTAGT 61.226 55.000 0.30 0.00 0.00 2.24
2856 4580 1.223187 CGCAACCCTCGTGTTTAGTT 58.777 50.000 0.00 0.00 0.00 2.24
2857 4581 1.070175 CGCAACCCTCGTGTTTAGTTG 60.070 52.381 0.00 0.00 40.55 3.16
2858 4582 2.681152 CAACCCTCGTGTTTAGTTGC 57.319 50.000 0.00 0.00 32.30 4.17
2859 4583 1.265905 CAACCCTCGTGTTTAGTTGCC 59.734 52.381 0.00 0.00 32.30 4.52
2860 4584 0.470766 ACCCTCGTGTTTAGTTGCCA 59.529 50.000 0.00 0.00 0.00 4.92
2861 4585 0.872388 CCCTCGTGTTTAGTTGCCAC 59.128 55.000 0.00 0.00 0.00 5.01
2862 4586 1.542547 CCCTCGTGTTTAGTTGCCACT 60.543 52.381 0.00 0.00 36.99 4.00
2863 4587 2.289195 CCCTCGTGTTTAGTTGCCACTA 60.289 50.000 0.00 0.00 34.06 2.74
2864 4588 3.596214 CCTCGTGTTTAGTTGCCACTAT 58.404 45.455 0.00 0.00 35.32 2.12
2865 4589 3.370978 CCTCGTGTTTAGTTGCCACTATG 59.629 47.826 0.00 0.00 35.32 2.23
2866 4590 4.242475 CTCGTGTTTAGTTGCCACTATGA 58.758 43.478 0.00 0.00 35.32 2.15
2867 4591 4.242475 TCGTGTTTAGTTGCCACTATGAG 58.758 43.478 0.00 0.00 35.32 2.90
2868 4592 3.994392 CGTGTTTAGTTGCCACTATGAGT 59.006 43.478 0.00 0.00 35.32 3.41
2869 4593 4.451096 CGTGTTTAGTTGCCACTATGAGTT 59.549 41.667 0.00 0.00 35.32 3.01
2870 4594 5.049680 CGTGTTTAGTTGCCACTATGAGTTT 60.050 40.000 0.00 0.00 35.32 2.66
2871 4595 6.142817 GTGTTTAGTTGCCACTATGAGTTTG 58.857 40.000 0.00 0.00 35.32 2.93
2872 4596 5.240623 TGTTTAGTTGCCACTATGAGTTTGG 59.759 40.000 0.00 0.00 35.32 3.28
2873 4597 3.788227 AGTTGCCACTATGAGTTTGGA 57.212 42.857 0.00 0.00 31.39 3.53
2874 4598 4.098914 AGTTGCCACTATGAGTTTGGAA 57.901 40.909 0.00 0.00 31.39 3.53
2875 4599 3.821033 AGTTGCCACTATGAGTTTGGAAC 59.179 43.478 0.00 3.49 32.52 3.62
2876 4600 2.790433 TGCCACTATGAGTTTGGAACC 58.210 47.619 0.00 0.00 31.39 3.62
2877 4601 2.092323 GCCACTATGAGTTTGGAACCC 58.908 52.381 0.00 0.00 31.39 4.11
2878 4602 2.290960 GCCACTATGAGTTTGGAACCCT 60.291 50.000 0.00 0.00 31.39 4.34
2879 4603 3.347216 CCACTATGAGTTTGGAACCCTG 58.653 50.000 0.00 0.00 31.39 4.45
2880 4604 3.009033 CCACTATGAGTTTGGAACCCTGA 59.991 47.826 0.00 0.00 31.39 3.86
2881 4605 4.506625 CCACTATGAGTTTGGAACCCTGAA 60.507 45.833 0.00 0.00 31.39 3.02
2882 4606 4.455877 CACTATGAGTTTGGAACCCTGAAC 59.544 45.833 0.00 0.00 0.00 3.18
2883 4607 3.593442 ATGAGTTTGGAACCCTGAACA 57.407 42.857 0.00 0.00 0.00 3.18
2884 4608 2.930950 TGAGTTTGGAACCCTGAACAG 58.069 47.619 0.00 0.00 0.00 3.16
2885 4609 2.507886 TGAGTTTGGAACCCTGAACAGA 59.492 45.455 3.19 0.00 0.00 3.41
2886 4610 2.879026 GAGTTTGGAACCCTGAACAGAC 59.121 50.000 3.19 0.00 0.00 3.51
2887 4611 1.954382 GTTTGGAACCCTGAACAGACC 59.046 52.381 3.19 2.79 0.00 3.85
2888 4612 0.476771 TTGGAACCCTGAACAGACCC 59.523 55.000 3.19 0.37 0.00 4.46
2889 4613 1.379146 GGAACCCTGAACAGACCCC 59.621 63.158 3.19 0.00 0.00 4.95
2890 4614 1.379146 GAACCCTGAACAGACCCCC 59.621 63.158 3.19 0.00 0.00 5.40
2891 4615 2.465055 GAACCCTGAACAGACCCCCG 62.465 65.000 3.19 0.00 0.00 5.73
2892 4616 3.717294 CCCTGAACAGACCCCCGG 61.717 72.222 0.00 0.00 0.00 5.73
2893 4617 2.928396 CCTGAACAGACCCCCGGT 60.928 66.667 0.00 0.00 39.44 5.28
2894 4618 2.347490 CTGAACAGACCCCCGGTG 59.653 66.667 0.00 0.00 35.25 4.94
2895 4619 2.446994 TGAACAGACCCCCGGTGT 60.447 61.111 0.00 0.00 35.25 4.16
2896 4620 2.052047 CTGAACAGACCCCCGGTGTT 62.052 60.000 7.07 7.07 35.25 3.32
2897 4621 0.763604 TGAACAGACCCCCGGTGTTA 60.764 55.000 7.31 0.00 35.25 2.41
2898 4622 0.397564 GAACAGACCCCCGGTGTTAA 59.602 55.000 7.31 0.00 35.25 2.01
2899 4623 0.399075 AACAGACCCCCGGTGTTAAG 59.601 55.000 5.64 0.00 35.25 1.85
2900 4624 1.376812 CAGACCCCCGGTGTTAAGC 60.377 63.158 0.00 0.00 35.25 3.09
2901 4625 2.045634 GACCCCCGGTGTTAAGCC 60.046 66.667 0.00 0.00 35.25 4.35
2919 4643 3.522483 CGGAGGAAGGAGAGGATGA 57.478 57.895 0.00 0.00 0.00 2.92
2920 4644 1.327303 CGGAGGAAGGAGAGGATGAG 58.673 60.000 0.00 0.00 0.00 2.90
2921 4645 1.715785 GGAGGAAGGAGAGGATGAGG 58.284 60.000 0.00 0.00 0.00 3.86
2922 4646 1.047801 GAGGAAGGAGAGGATGAGGC 58.952 60.000 0.00 0.00 0.00 4.70
2923 4647 0.399806 AGGAAGGAGAGGATGAGGCC 60.400 60.000 0.00 0.00 0.00 5.19
2924 4648 0.692419 GGAAGGAGAGGATGAGGCCA 60.692 60.000 5.01 0.00 0.00 5.36
2925 4649 1.207791 GAAGGAGAGGATGAGGCCAA 58.792 55.000 5.01 0.00 0.00 4.52
2926 4650 1.140652 GAAGGAGAGGATGAGGCCAAG 59.859 57.143 5.01 0.00 0.00 3.61
2927 4651 0.043940 AGGAGAGGATGAGGCCAAGT 59.956 55.000 5.01 0.00 0.00 3.16
2928 4652 0.467804 GGAGAGGATGAGGCCAAGTC 59.532 60.000 5.01 0.00 0.00 3.01
2929 4653 1.198713 GAGAGGATGAGGCCAAGTCA 58.801 55.000 5.01 0.00 0.00 3.41
2930 4654 1.767681 GAGAGGATGAGGCCAAGTCAT 59.232 52.381 5.01 5.42 37.36 3.06
2931 4655 1.767681 AGAGGATGAGGCCAAGTCATC 59.232 52.381 20.21 20.21 46.58 2.92
2935 4659 1.607628 GATGAGGCCAAGTCATCATGC 59.392 52.381 22.38 6.42 46.55 4.06
2936 4660 0.394762 TGAGGCCAAGTCATCATGCC 60.395 55.000 5.01 0.00 42.48 4.40
2937 4661 1.076485 AGGCCAAGTCATCATGCCC 60.076 57.895 5.01 0.00 43.18 5.36
2938 4662 2.129785 GGCCAAGTCATCATGCCCC 61.130 63.158 0.00 0.00 36.07 5.80
2939 4663 1.076485 GCCAAGTCATCATGCCCCT 60.076 57.895 0.00 0.00 0.00 4.79
2940 4664 0.685458 GCCAAGTCATCATGCCCCTT 60.685 55.000 0.00 0.00 0.00 3.95
2941 4665 1.410083 GCCAAGTCATCATGCCCCTTA 60.410 52.381 0.00 0.00 0.00 2.69
2942 4666 2.754186 GCCAAGTCATCATGCCCCTTAT 60.754 50.000 0.00 0.00 0.00 1.73
2943 4667 2.889045 CCAAGTCATCATGCCCCTTATG 59.111 50.000 0.00 0.00 0.00 1.90
2944 4668 2.283145 AGTCATCATGCCCCTTATGC 57.717 50.000 0.00 0.00 0.00 3.14
2945 4669 1.202976 AGTCATCATGCCCCTTATGCC 60.203 52.381 0.00 0.00 0.00 4.40
2946 4670 0.112995 TCATCATGCCCCTTATGCCC 59.887 55.000 0.00 0.00 0.00 5.36
2947 4671 0.113776 CATCATGCCCCTTATGCCCT 59.886 55.000 0.00 0.00 0.00 5.19
2948 4672 0.113776 ATCATGCCCCTTATGCCCTG 59.886 55.000 0.00 0.00 0.00 4.45
2949 4673 1.532316 CATGCCCCTTATGCCCTGG 60.532 63.158 0.00 0.00 0.00 4.45
2950 4674 2.782417 ATGCCCCTTATGCCCTGGG 61.782 63.158 8.86 8.86 41.23 4.45
2963 4687 4.969196 CTGGGCGACACACGTGCT 62.969 66.667 17.22 0.00 44.60 4.40
2964 4688 3.567478 CTGGGCGACACACGTGCTA 62.567 63.158 17.22 0.00 44.60 3.49
2965 4689 3.110178 GGGCGACACACGTGCTAC 61.110 66.667 17.22 5.93 44.60 3.58
2966 4690 2.355363 GGCGACACACGTGCTACA 60.355 61.111 17.22 0.00 44.60 2.74
2967 4691 1.952133 GGCGACACACGTGCTACAA 60.952 57.895 17.22 0.00 44.60 2.41
2968 4692 1.289109 GGCGACACACGTGCTACAAT 61.289 55.000 17.22 0.00 44.60 2.71
2969 4693 0.179250 GCGACACACGTGCTACAATG 60.179 55.000 17.22 7.81 44.60 2.82
2970 4694 0.438445 CGACACACGTGCTACAATGG 59.562 55.000 17.22 0.00 37.22 3.16
2971 4695 0.796312 GACACACGTGCTACAATGGG 59.204 55.000 17.22 0.00 0.00 4.00
2972 4696 1.234615 ACACACGTGCTACAATGGGC 61.235 55.000 17.22 0.00 0.00 5.36
2973 4697 2.032634 ACACGTGCTACAATGGGCG 61.033 57.895 17.22 0.00 0.00 6.13
2974 4698 2.435938 ACGTGCTACAATGGGCGG 60.436 61.111 0.00 0.00 0.00 6.13
2975 4699 3.202001 CGTGCTACAATGGGCGGG 61.202 66.667 0.00 0.00 0.00 6.13
2976 4700 2.270850 GTGCTACAATGGGCGGGA 59.729 61.111 0.00 0.00 0.00 5.14
2977 4701 2.112815 GTGCTACAATGGGCGGGAC 61.113 63.158 0.00 0.00 0.00 4.46
2978 4702 2.270850 GCTACAATGGGCGGGACA 59.729 61.111 0.00 0.00 0.00 4.02
2979 4703 1.377987 GCTACAATGGGCGGGACAA 60.378 57.895 0.00 0.00 0.00 3.18
2980 4704 0.963355 GCTACAATGGGCGGGACAAA 60.963 55.000 0.00 0.00 0.00 2.83
2981 4705 1.094785 CTACAATGGGCGGGACAAAG 58.905 55.000 0.00 0.00 0.00 2.77
2982 4706 0.322997 TACAATGGGCGGGACAAAGG 60.323 55.000 0.00 0.00 0.00 3.11
2983 4707 2.037208 AATGGGCGGGACAAAGGG 59.963 61.111 0.00 0.00 0.00 3.95
2984 4708 2.852281 AATGGGCGGGACAAAGGGT 61.852 57.895 0.00 0.00 0.00 4.34
2985 4709 2.781431 AATGGGCGGGACAAAGGGTC 62.781 60.000 0.00 0.00 46.20 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.955428 GCGTGATGCTCCTCCAAACA 60.955 55.000 0.00 0.00 41.73 2.83
1 2 1.796796 GCGTGATGCTCCTCCAAAC 59.203 57.895 0.00 0.00 41.73 2.93
2 3 4.301505 GCGTGATGCTCCTCCAAA 57.698 55.556 0.00 0.00 41.73 3.28
11 12 3.505449 CTAAACGGATTAGCGTGATGC 57.495 47.619 0.00 0.00 46.98 3.91
25 26 7.230296 ATAGCACGCTAAATGACGCTAAACG 62.230 44.000 2.32 0.00 38.86 3.60
26 27 2.093783 AGCACGCTAAATGACGCTAAAC 59.906 45.455 0.00 0.00 0.00 2.01
27 28 2.343101 AGCACGCTAAATGACGCTAAA 58.657 42.857 0.00 0.00 0.00 1.85
28 29 2.004583 AGCACGCTAAATGACGCTAA 57.995 45.000 0.00 0.00 0.00 3.09
29 30 2.855660 TAGCACGCTAAATGACGCTA 57.144 45.000 0.00 0.00 0.00 4.26
30 31 2.225068 ATAGCACGCTAAATGACGCT 57.775 45.000 2.32 0.00 31.73 5.07
31 32 3.050619 ACTATAGCACGCTAAATGACGC 58.949 45.455 2.32 0.00 31.73 5.19
32 33 3.121328 GCACTATAGCACGCTAAATGACG 60.121 47.826 2.32 0.00 31.73 4.35
33 34 3.802139 TGCACTATAGCACGCTAAATGAC 59.198 43.478 2.32 0.00 40.11 3.06
34 35 4.053469 TGCACTATAGCACGCTAAATGA 57.947 40.909 2.32 0.00 40.11 2.57
35 36 4.794248 TTGCACTATAGCACGCTAAATG 57.206 40.909 2.32 3.46 45.61 2.32
36 37 6.377327 AAATTGCACTATAGCACGCTAAAT 57.623 33.333 2.32 0.00 45.61 1.40
37 38 5.811399 AAATTGCACTATAGCACGCTAAA 57.189 34.783 2.32 0.00 45.61 1.85
38 39 5.050363 GCTAAATTGCACTATAGCACGCTAA 60.050 40.000 15.36 0.00 45.61 3.09
39 40 4.447724 GCTAAATTGCACTATAGCACGCTA 59.552 41.667 15.36 0.39 45.61 4.26
40 41 3.248602 GCTAAATTGCACTATAGCACGCT 59.751 43.478 15.36 0.00 45.61 5.07
41 42 3.545633 GCTAAATTGCACTATAGCACGC 58.454 45.455 15.36 0.99 45.61 5.34
42 43 3.245284 ACGCTAAATTGCACTATAGCACG 59.755 43.478 18.54 9.46 45.61 5.34
43 44 4.795970 ACGCTAAATTGCACTATAGCAC 57.204 40.909 18.54 0.00 45.61 4.40
44 45 5.155509 CAACGCTAAATTGCACTATAGCA 57.844 39.130 18.54 0.00 43.99 3.49
100 101 9.843334 TTTTCGGTTTCGCAAATAATATTTAGT 57.157 25.926 0.00 0.00 36.13 2.24
103 104 8.652463 CCTTTTTCGGTTTCGCAAATAATATTT 58.348 29.630 0.00 0.00 32.30 1.40
104 105 7.201487 GCCTTTTTCGGTTTCGCAAATAATATT 60.201 33.333 0.00 0.00 32.30 1.28
105 106 6.254804 GCCTTTTTCGGTTTCGCAAATAATAT 59.745 34.615 0.00 0.00 32.30 1.28
106 107 5.573669 GCCTTTTTCGGTTTCGCAAATAATA 59.426 36.000 0.00 0.00 32.30 0.98
107 108 4.387559 GCCTTTTTCGGTTTCGCAAATAAT 59.612 37.500 0.00 0.00 32.30 1.28
108 109 3.736759 GCCTTTTTCGGTTTCGCAAATAA 59.263 39.130 0.00 0.00 32.30 1.40
109 110 3.243434 TGCCTTTTTCGGTTTCGCAAATA 60.243 39.130 0.00 0.00 32.30 1.40
110 111 2.131972 GCCTTTTTCGGTTTCGCAAAT 58.868 42.857 0.00 0.00 32.30 2.32
111 112 1.135083 TGCCTTTTTCGGTTTCGCAAA 60.135 42.857 0.00 0.00 36.13 3.68
112 113 0.456221 TGCCTTTTTCGGTTTCGCAA 59.544 45.000 0.00 0.00 36.13 4.85
113 114 0.456221 TTGCCTTTTTCGGTTTCGCA 59.544 45.000 0.00 0.00 36.13 5.10
114 115 0.850217 GTTGCCTTTTTCGGTTTCGC 59.150 50.000 0.00 0.00 36.13 4.70
115 116 1.117234 CGTTGCCTTTTTCGGTTTCG 58.883 50.000 0.00 0.00 37.82 3.46
116 117 2.381589 CTCGTTGCCTTTTTCGGTTTC 58.618 47.619 0.00 0.00 0.00 2.78
117 118 1.535226 GCTCGTTGCCTTTTTCGGTTT 60.535 47.619 0.00 0.00 35.15 3.27
118 119 0.030235 GCTCGTTGCCTTTTTCGGTT 59.970 50.000 0.00 0.00 35.15 4.44
119 120 1.098712 TGCTCGTTGCCTTTTTCGGT 61.099 50.000 1.30 0.00 42.00 4.69
120 121 0.240945 ATGCTCGTTGCCTTTTTCGG 59.759 50.000 1.30 0.00 42.00 4.30
121 122 2.892373 TATGCTCGTTGCCTTTTTCG 57.108 45.000 1.30 0.00 42.00 3.46
122 123 4.923281 ACAATTATGCTCGTTGCCTTTTTC 59.077 37.500 1.30 0.00 42.00 2.29
123 124 4.685628 CACAATTATGCTCGTTGCCTTTTT 59.314 37.500 1.30 0.00 42.00 1.94
124 125 4.236935 CACAATTATGCTCGTTGCCTTTT 58.763 39.130 1.30 0.00 42.00 2.27
125 126 3.367292 CCACAATTATGCTCGTTGCCTTT 60.367 43.478 1.30 0.00 42.00 3.11
126 127 2.164219 CCACAATTATGCTCGTTGCCTT 59.836 45.455 1.30 0.00 42.00 4.35
127 128 1.745087 CCACAATTATGCTCGTTGCCT 59.255 47.619 1.30 0.00 42.00 4.75
128 129 1.202290 CCCACAATTATGCTCGTTGCC 60.202 52.381 1.30 0.00 42.00 4.52
129 130 1.472480 ACCCACAATTATGCTCGTTGC 59.528 47.619 0.00 0.00 43.25 4.17
130 131 3.500982 CAACCCACAATTATGCTCGTTG 58.499 45.455 0.00 0.00 0.00 4.10
131 132 2.491693 CCAACCCACAATTATGCTCGTT 59.508 45.455 0.00 0.00 0.00 3.85
132 133 2.091541 CCAACCCACAATTATGCTCGT 58.908 47.619 0.00 0.00 0.00 4.18
133 134 2.097466 GTCCAACCCACAATTATGCTCG 59.903 50.000 0.00 0.00 0.00 5.03
134 135 3.088532 TGTCCAACCCACAATTATGCTC 58.911 45.455 0.00 0.00 0.00 4.26
135 136 3.168035 TGTCCAACCCACAATTATGCT 57.832 42.857 0.00 0.00 0.00 3.79
136 137 5.590530 TTATGTCCAACCCACAATTATGC 57.409 39.130 0.00 0.00 0.00 3.14
137 138 7.227711 TCGTATTATGTCCAACCCACAATTATG 59.772 37.037 0.00 0.00 0.00 1.90
138 139 7.284074 TCGTATTATGTCCAACCCACAATTAT 58.716 34.615 0.00 0.00 0.00 1.28
139 140 6.651086 TCGTATTATGTCCAACCCACAATTA 58.349 36.000 0.00 0.00 0.00 1.40
140 141 5.502079 TCGTATTATGTCCAACCCACAATT 58.498 37.500 0.00 0.00 0.00 2.32
141 142 5.105567 TCGTATTATGTCCAACCCACAAT 57.894 39.130 0.00 0.00 0.00 2.71
142 143 4.554960 TCGTATTATGTCCAACCCACAA 57.445 40.909 0.00 0.00 0.00 3.33
143 144 4.162509 TCATCGTATTATGTCCAACCCACA 59.837 41.667 0.00 0.00 0.00 4.17
144 145 4.699637 TCATCGTATTATGTCCAACCCAC 58.300 43.478 0.00 0.00 0.00 4.61
145 146 5.163248 ACATCATCGTATTATGTCCAACCCA 60.163 40.000 0.00 0.00 0.00 4.51
146 147 5.179368 CACATCATCGTATTATGTCCAACCC 59.821 44.000 0.00 0.00 31.60 4.11
147 148 5.334105 GCACATCATCGTATTATGTCCAACC 60.334 44.000 0.00 0.00 31.60 3.77
148 149 5.236263 TGCACATCATCGTATTATGTCCAAC 59.764 40.000 0.00 0.00 31.60 3.77
149 150 5.363939 TGCACATCATCGTATTATGTCCAA 58.636 37.500 0.00 0.00 31.60 3.53
150 151 4.954875 TGCACATCATCGTATTATGTCCA 58.045 39.130 0.00 0.00 31.60 4.02
151 152 6.813649 ACTATGCACATCATCGTATTATGTCC 59.186 38.462 0.00 0.00 36.63 4.02
152 153 7.009631 GGACTATGCACATCATCGTATTATGTC 59.990 40.741 0.00 0.00 36.63 3.06
153 154 6.813649 GGACTATGCACATCATCGTATTATGT 59.186 38.462 0.00 0.00 36.63 2.29
154 155 6.256539 GGGACTATGCACATCATCGTATTATG 59.743 42.308 0.00 0.00 36.63 1.90
155 156 6.341316 GGGACTATGCACATCATCGTATTAT 58.659 40.000 0.00 0.00 36.63 1.28
156 157 5.621329 CGGGACTATGCACATCATCGTATTA 60.621 44.000 0.00 0.00 36.63 0.98
157 158 4.569943 GGGACTATGCACATCATCGTATT 58.430 43.478 0.00 0.00 36.63 1.89
158 159 3.367395 CGGGACTATGCACATCATCGTAT 60.367 47.826 0.00 0.00 36.63 3.06
159 160 2.030274 CGGGACTATGCACATCATCGTA 60.030 50.000 0.00 0.00 36.63 3.43
160 161 1.269778 CGGGACTATGCACATCATCGT 60.270 52.381 0.00 0.00 36.63 3.73
161 162 1.269778 ACGGGACTATGCACATCATCG 60.270 52.381 0.00 0.00 36.63 3.84
162 163 2.138320 CACGGGACTATGCACATCATC 58.862 52.381 0.00 0.00 36.63 2.92
163 164 1.811558 GCACGGGACTATGCACATCAT 60.812 52.381 0.00 0.00 41.65 2.45
164 165 0.461870 GCACGGGACTATGCACATCA 60.462 55.000 0.00 0.00 41.65 3.07
165 166 0.179073 AGCACGGGACTATGCACATC 60.179 55.000 0.00 0.00 44.59 3.06
166 167 0.253044 AAGCACGGGACTATGCACAT 59.747 50.000 0.00 0.00 44.59 3.21
167 168 0.673333 CAAGCACGGGACTATGCACA 60.673 55.000 0.00 0.00 44.59 4.57
168 169 0.391130 TCAAGCACGGGACTATGCAC 60.391 55.000 0.00 0.00 44.59 4.57
169 170 0.323302 TTCAAGCACGGGACTATGCA 59.677 50.000 0.00 0.00 44.59 3.96
170 171 1.448985 TTTCAAGCACGGGACTATGC 58.551 50.000 0.00 0.00 42.39 3.14
171 172 2.420022 CCTTTTCAAGCACGGGACTATG 59.580 50.000 0.00 0.00 0.00 2.23
172 173 2.304761 TCCTTTTCAAGCACGGGACTAT 59.695 45.455 0.00 0.00 0.00 2.12
173 174 1.695242 TCCTTTTCAAGCACGGGACTA 59.305 47.619 0.00 0.00 0.00 2.59
174 175 0.472471 TCCTTTTCAAGCACGGGACT 59.528 50.000 0.00 0.00 0.00 3.85
175 176 1.314730 TTCCTTTTCAAGCACGGGAC 58.685 50.000 0.00 0.00 0.00 4.46
176 177 2.060050 TTTCCTTTTCAAGCACGGGA 57.940 45.000 0.00 0.00 0.00 5.14
177 178 2.880963 TTTTCCTTTTCAAGCACGGG 57.119 45.000 0.00 0.00 0.00 5.28
178 179 3.494251 CCATTTTTCCTTTTCAAGCACGG 59.506 43.478 0.00 0.00 0.00 4.94
179 180 3.059665 GCCATTTTTCCTTTTCAAGCACG 60.060 43.478 0.00 0.00 0.00 5.34
180 181 3.059665 CGCCATTTTTCCTTTTCAAGCAC 60.060 43.478 0.00 0.00 0.00 4.40
181 182 3.129871 CGCCATTTTTCCTTTTCAAGCA 58.870 40.909 0.00 0.00 0.00 3.91
182 183 3.130633 ACGCCATTTTTCCTTTTCAAGC 58.869 40.909 0.00 0.00 0.00 4.01
183 184 6.155827 TCATACGCCATTTTTCCTTTTCAAG 58.844 36.000 0.00 0.00 0.00 3.02
184 185 6.090483 TCATACGCCATTTTTCCTTTTCAA 57.910 33.333 0.00 0.00 0.00 2.69
185 186 5.713792 TCATACGCCATTTTTCCTTTTCA 57.286 34.783 0.00 0.00 0.00 2.69
186 187 7.595311 AATTCATACGCCATTTTTCCTTTTC 57.405 32.000 0.00 0.00 0.00 2.29
187 188 7.977789 AAATTCATACGCCATTTTTCCTTTT 57.022 28.000 0.00 0.00 0.00 2.27
188 189 9.665719 AATAAATTCATACGCCATTTTTCCTTT 57.334 25.926 0.00 0.00 0.00 3.11
189 190 9.665719 AAATAAATTCATACGCCATTTTTCCTT 57.334 25.926 0.00 0.00 0.00 3.36
226 227 7.035004 CACAATTCCATCCATACGTCATTTTT 58.965 34.615 0.00 0.00 0.00 1.94
227 228 6.152661 ACACAATTCCATCCATACGTCATTTT 59.847 34.615 0.00 0.00 0.00 1.82
228 229 5.652014 ACACAATTCCATCCATACGTCATTT 59.348 36.000 0.00 0.00 0.00 2.32
229 230 5.192927 ACACAATTCCATCCATACGTCATT 58.807 37.500 0.00 0.00 0.00 2.57
230 231 4.780815 ACACAATTCCATCCATACGTCAT 58.219 39.130 0.00 0.00 0.00 3.06
231 232 4.214986 ACACAATTCCATCCATACGTCA 57.785 40.909 0.00 0.00 0.00 4.35
232 233 5.597806 TCTACACAATTCCATCCATACGTC 58.402 41.667 0.00 0.00 0.00 4.34
233 234 5.607939 TCTACACAATTCCATCCATACGT 57.392 39.130 0.00 0.00 0.00 3.57
234 235 7.355017 CAAATCTACACAATTCCATCCATACG 58.645 38.462 0.00 0.00 0.00 3.06
235 236 7.141363 GCAAATCTACACAATTCCATCCATAC 58.859 38.462 0.00 0.00 0.00 2.39
236 237 6.265196 GGCAAATCTACACAATTCCATCCATA 59.735 38.462 0.00 0.00 0.00 2.74
237 238 5.069516 GGCAAATCTACACAATTCCATCCAT 59.930 40.000 0.00 0.00 0.00 3.41
238 239 4.402155 GGCAAATCTACACAATTCCATCCA 59.598 41.667 0.00 0.00 0.00 3.41
239 240 4.646492 AGGCAAATCTACACAATTCCATCC 59.354 41.667 0.00 0.00 0.00 3.51
240 241 5.841957 AGGCAAATCTACACAATTCCATC 57.158 39.130 0.00 0.00 0.00 3.51
300 301 3.253677 GTCCTCACTGTCGGTGGATATAG 59.746 52.174 11.94 1.59 45.38 1.31
431 432 8.946085 GGTTGACATTTTTCAGTATCACTATCA 58.054 33.333 0.00 0.00 0.00 2.15
437 438 8.134895 GTCTTTGGTTGACATTTTTCAGTATCA 58.865 33.333 0.00 0.00 34.80 2.15
440 443 7.416213 CCAGTCTTTGGTTGACATTTTTCAGTA 60.416 37.037 0.00 0.00 42.41 2.74
475 478 3.023119 TCGGTCCGGTTGTTAAGCTATA 58.977 45.455 12.29 0.00 0.00 1.31
476 479 1.826720 TCGGTCCGGTTGTTAAGCTAT 59.173 47.619 12.29 0.00 0.00 2.97
478 481 0.320160 GTCGGTCCGGTTGTTAAGCT 60.320 55.000 12.29 0.00 0.00 3.74
479 482 1.293963 GGTCGGTCCGGTTGTTAAGC 61.294 60.000 12.29 0.00 0.00 3.09
480 483 2.831597 GGTCGGTCCGGTTGTTAAG 58.168 57.895 12.29 0.00 0.00 1.85
502 505 3.572584 GTGACGTCGACCTGTTTCTATT 58.427 45.455 10.58 0.00 0.00 1.73
503 506 2.094854 GGTGACGTCGACCTGTTTCTAT 60.095 50.000 22.27 0.00 0.00 1.98
505 508 0.031721 GGTGACGTCGACCTGTTTCT 59.968 55.000 22.27 0.00 0.00 2.52
534 566 0.681175 GGATGGGCAAGTTGCTTGTT 59.319 50.000 26.16 9.90 44.28 2.83
544 576 3.153919 GACAACTAAGTTGGATGGGCAA 58.846 45.455 0.00 0.00 46.50 4.52
640 673 4.320870 GGTTCAGGTTTTTATCGGTCAGA 58.679 43.478 0.00 0.00 0.00 3.27
747 781 1.521681 GCCGGTAGAGTGCACATCC 60.522 63.158 21.04 13.65 0.00 3.51
748 782 0.807667 CAGCCGGTAGAGTGCACATC 60.808 60.000 21.04 13.40 0.00 3.06
749 783 1.219124 CAGCCGGTAGAGTGCACAT 59.781 57.895 21.04 9.83 0.00 3.21
750 784 2.656646 CAGCCGGTAGAGTGCACA 59.343 61.111 21.04 0.00 0.00 4.57
751 785 2.788191 AAGCAGCCGGTAGAGTGCAC 62.788 60.000 9.40 9.40 38.44 4.57
752 786 2.507110 GAAGCAGCCGGTAGAGTGCA 62.507 60.000 1.90 0.00 38.44 4.57
753 787 1.811679 GAAGCAGCCGGTAGAGTGC 60.812 63.158 1.90 5.03 36.10 4.40
754 788 0.737715 GTGAAGCAGCCGGTAGAGTG 60.738 60.000 1.90 0.00 0.00 3.51
755 789 0.900647 AGTGAAGCAGCCGGTAGAGT 60.901 55.000 1.90 0.00 0.00 3.24
756 790 0.179124 GAGTGAAGCAGCCGGTAGAG 60.179 60.000 1.90 0.00 0.00 2.43
757 791 1.890894 GAGTGAAGCAGCCGGTAGA 59.109 57.895 1.90 0.00 0.00 2.59
758 792 1.517257 CGAGTGAAGCAGCCGGTAG 60.517 63.158 1.90 0.00 0.00 3.18
759 793 2.571757 CGAGTGAAGCAGCCGGTA 59.428 61.111 1.90 0.00 0.00 4.02
760 794 4.379243 CCGAGTGAAGCAGCCGGT 62.379 66.667 1.90 0.00 35.83 5.28
761 795 4.379243 ACCGAGTGAAGCAGCCGG 62.379 66.667 0.00 0.00 45.09 6.13
762 796 2.811317 GACCGAGTGAAGCAGCCG 60.811 66.667 0.00 0.00 0.00 5.52
763 797 1.078848 ATGACCGAGTGAAGCAGCC 60.079 57.895 0.00 0.00 0.00 4.85
764 798 1.086634 GGATGACCGAGTGAAGCAGC 61.087 60.000 0.00 0.00 0.00 5.25
765 799 0.534412 AGGATGACCGAGTGAAGCAG 59.466 55.000 0.00 0.00 41.83 4.24
766 800 0.532573 GAGGATGACCGAGTGAAGCA 59.467 55.000 0.00 0.00 41.83 3.91
767 801 0.526524 CGAGGATGACCGAGTGAAGC 60.527 60.000 0.00 0.00 41.83 3.86
768 802 0.811915 ACGAGGATGACCGAGTGAAG 59.188 55.000 0.00 0.00 41.83 3.02
860 894 4.654262 GGGTGATGGAGGATCTTGTAACTA 59.346 45.833 0.00 0.00 33.73 2.24
869 903 1.271271 GCTGATGGGTGATGGAGGATC 60.271 57.143 0.00 0.00 0.00 3.36
870 904 0.769873 GCTGATGGGTGATGGAGGAT 59.230 55.000 0.00 0.00 0.00 3.24
871 905 0.326904 AGCTGATGGGTGATGGAGGA 60.327 55.000 0.00 0.00 0.00 3.71
872 906 0.549950 AAGCTGATGGGTGATGGAGG 59.450 55.000 0.00 0.00 0.00 4.30
873 907 2.702478 TCTAAGCTGATGGGTGATGGAG 59.298 50.000 0.00 0.00 0.00 3.86
874 908 2.435805 GTCTAAGCTGATGGGTGATGGA 59.564 50.000 0.00 0.00 0.00 3.41
875 909 2.486191 GGTCTAAGCTGATGGGTGATGG 60.486 54.545 0.00 0.00 0.00 3.51
895 929 2.019984 GCAAGTGGATTGGCTTCTAGG 58.980 52.381 0.00 0.00 39.47 3.02
926 960 0.393808 TGTCCTTGCTTTATCGCCCC 60.394 55.000 0.00 0.00 0.00 5.80
934 968 3.067106 CGTCTGTATGTGTCCTTGCTTT 58.933 45.455 0.00 0.00 0.00 3.51
935 969 2.688507 CGTCTGTATGTGTCCTTGCTT 58.311 47.619 0.00 0.00 0.00 3.91
936 970 1.673033 GCGTCTGTATGTGTCCTTGCT 60.673 52.381 0.00 0.00 0.00 3.91
937 971 0.721718 GCGTCTGTATGTGTCCTTGC 59.278 55.000 0.00 0.00 0.00 4.01
967 1001 2.577059 GTCGTCGGATGCCCTCAA 59.423 61.111 0.00 0.00 0.00 3.02
1011 1045 4.828925 GCACCTCGAGCTGGAGCC 62.829 72.222 19.49 6.84 43.38 4.70
1012 1046 3.768922 AGCACCTCGAGCTGGAGC 61.769 66.667 19.49 11.20 41.61 4.70
1082 1116 2.124983 CCCTCTGCCATGTGACGG 60.125 66.667 0.00 0.00 0.00 4.79
1083 1117 2.821366 GCCCTCTGCCATGTGACG 60.821 66.667 0.00 0.00 0.00 4.35
1084 1118 2.821366 CGCCCTCTGCCATGTGAC 60.821 66.667 0.00 0.00 36.24 3.67
1085 1119 4.783621 GCGCCCTCTGCCATGTGA 62.784 66.667 0.00 0.00 36.24 3.58
1087 1121 4.119363 ATGCGCCCTCTGCCATGT 62.119 61.111 4.18 0.00 36.24 3.21
1088 1122 3.592814 CATGCGCCCTCTGCCATG 61.593 66.667 4.18 0.00 40.10 3.66
1147 1181 6.575162 AAAGAATTTGTAAGCTGGATCGTT 57.425 33.333 0.00 0.00 36.60 3.85
1209 1246 1.310933 CGCCTCCTGCAATGAAAGCT 61.311 55.000 0.00 0.00 41.33 3.74
1291 1328 1.416049 CGCCGTCGTTGAACATCAG 59.584 57.895 0.00 0.00 0.00 2.90
1317 1354 1.741770 GACCTTGTAGCACTGCCCG 60.742 63.158 0.00 0.00 0.00 6.13
1347 1384 2.661537 CGCGTGTCTGCCAGTTCA 60.662 61.111 0.00 0.00 0.00 3.18
1360 1397 3.622826 AGGCTTACACCACCGCGT 61.623 61.111 4.92 0.00 0.00 6.01
1364 1401 0.889186 CACACCAGGCTTACACCACC 60.889 60.000 0.00 0.00 0.00 4.61
1459 1496 2.939022 GAAGTGCAGTCGTGGTGC 59.061 61.111 0.00 0.35 41.59 5.01
1460 1497 1.299850 TCGAAGTGCAGTCGTGGTG 60.300 57.895 16.84 0.00 39.52 4.17
1461 1498 1.299926 GTCGAAGTGCAGTCGTGGT 60.300 57.895 16.84 0.00 39.52 4.16
1469 1506 0.817229 TTGTGCCATGTCGAAGTGCA 60.817 50.000 0.00 0.00 0.00 4.57
1491 1528 1.524849 GCCGATCTTCTCCCAAGCC 60.525 63.158 0.00 0.00 0.00 4.35
1509 1546 1.529226 TGATGCCACCCTTGTAAACG 58.471 50.000 0.00 0.00 0.00 3.60
1549 1586 9.123709 CTCTGCAAAATTTAACGTGCTTAATTA 57.876 29.630 12.47 0.00 37.87 1.40
1651 3201 9.997937 AACCCTGCAATGGTTAGGTTTTCCTTA 62.998 40.741 16.57 0.00 43.36 2.69
1670 3220 0.960364 TTTCTCGCATGGAACCCTGC 60.960 55.000 10.29 10.29 35.02 4.85
1671 3221 0.804989 GTTTCTCGCATGGAACCCTG 59.195 55.000 0.00 0.00 0.00 4.45
1701 3251 1.153901 TCCGTCGATCTTGAACCGC 60.154 57.895 0.00 0.00 0.00 5.68
1714 3264 2.693797 TTGAAGTAGTCGTGTCCGTC 57.306 50.000 0.00 0.00 35.01 4.79
1723 3273 4.090642 CACGAGCACAAGATTGAAGTAGTC 59.909 45.833 0.00 0.00 0.00 2.59
1742 3292 2.020720 AGGTTGCAACATTGAACACGA 58.979 42.857 29.55 0.00 0.00 4.35
1793 3343 3.009723 GCCCAATCGTTTGAATCTGAGA 58.990 45.455 7.79 0.00 34.60 3.27
1867 3417 5.359009 TCAATCTGAATGAAAGCATCTTCCC 59.641 40.000 0.00 0.00 32.35 3.97
1890 3440 3.302347 CTGCCCCTCAGTGTCGGTC 62.302 68.421 0.00 0.00 38.02 4.79
1920 3470 4.499037 TCCACTCGACACGATATTATGG 57.501 45.455 0.00 0.00 34.61 2.74
1926 3476 2.047002 TCCATCCACTCGACACGATA 57.953 50.000 0.00 0.00 34.61 2.92
1934 3484 2.076863 GACCAAACTTCCATCCACTCG 58.923 52.381 0.00 0.00 0.00 4.18
1950 3500 3.472652 ACTGCTCGTAAATGTTTGACCA 58.527 40.909 0.00 0.00 0.00 4.02
1952 3502 4.146443 GCAAACTGCTCGTAAATGTTTGAC 59.854 41.667 17.42 7.81 45.75 3.18
1983 3533 4.319694 CGATGATCTCTAGAGTGTGCTCAG 60.320 50.000 19.21 2.73 44.00 3.35
1996 3546 4.970711 AGAATGAAATGCCGATGATCTCT 58.029 39.130 0.00 0.00 0.00 3.10
2006 3556 3.691118 TCACTGCACTAGAATGAAATGCC 59.309 43.478 0.00 0.00 35.37 4.40
2119 3669 9.706691 TGTTTTCTTGAATAGAGAACGTATTCT 57.293 29.630 8.91 7.94 46.03 2.40
2165 3853 1.134367 CGAGTCCGAGCAACCTTCATA 59.866 52.381 0.00 0.00 38.22 2.15
2166 3854 0.108615 CGAGTCCGAGCAACCTTCAT 60.109 55.000 0.00 0.00 38.22 2.57
2185 3873 6.757897 TGACACTCCAATAACCATTGAATC 57.242 37.500 0.00 0.00 43.67 2.52
2197 3885 1.271597 GGACCTGCTTGACACTCCAAT 60.272 52.381 0.00 0.00 0.00 3.16
2212 3900 2.555227 CCCTTACATTTGCAGTGGACCT 60.555 50.000 6.20 0.00 0.00 3.85
2221 3909 2.378038 TGGAGATGCCCTTACATTTGC 58.622 47.619 0.00 0.00 34.97 3.68
2246 3934 1.608025 GCGAGTCTGATTTGTGGGTCA 60.608 52.381 0.00 0.00 0.00 4.02
2247 3935 1.079503 GCGAGTCTGATTTGTGGGTC 58.920 55.000 0.00 0.00 0.00 4.46
2265 3953 1.664965 GTGTCCGCGGATGGATAGC 60.665 63.158 33.58 17.12 40.91 2.97
2277 3965 0.172578 TGCTTCCGTATCTGTGTCCG 59.827 55.000 0.00 0.00 0.00 4.79
2285 3973 1.537202 GGAATGGCATGCTTCCGTATC 59.463 52.381 19.53 8.65 32.20 2.24
2290 3978 1.700955 AGATGGAATGGCATGCTTCC 58.299 50.000 24.81 24.81 41.13 3.46
2291 3979 3.442977 GGATAGATGGAATGGCATGCTTC 59.557 47.826 18.92 14.09 0.00 3.86
2293 3981 2.617276 CGGATAGATGGAATGGCATGCT 60.617 50.000 18.92 0.00 0.00 3.79
2294 3982 1.741706 CGGATAGATGGAATGGCATGC 59.258 52.381 9.90 9.90 0.00 4.06
2310 4002 5.070685 ACTTTAAAGAAAACAGAGGCGGAT 58.929 37.500 21.92 0.00 0.00 4.18
2386 4080 5.472137 GGGTTCTTAGTGTTGCATTTGAGTA 59.528 40.000 0.00 0.00 0.00 2.59
2387 4081 4.278419 GGGTTCTTAGTGTTGCATTTGAGT 59.722 41.667 0.00 0.00 0.00 3.41
2388 4082 4.520492 AGGGTTCTTAGTGTTGCATTTGAG 59.480 41.667 0.00 0.00 0.00 3.02
2389 4083 4.469657 AGGGTTCTTAGTGTTGCATTTGA 58.530 39.130 0.00 0.00 0.00 2.69
2390 4084 4.853924 AGGGTTCTTAGTGTTGCATTTG 57.146 40.909 0.00 0.00 0.00 2.32
2416 4110 2.781681 AGTTTACTGGATTCCCCACG 57.218 50.000 0.00 0.00 40.82 4.94
2460 4154 5.486526 TGTTTGGCAAACTTCTTCAACATT 58.513 33.333 35.03 0.00 41.90 2.71
2476 4170 8.371770 TGGTTAACAAAAAGATAATGTTTGGC 57.628 30.769 8.10 0.00 38.22 4.52
2528 4222 0.036577 ATGACTCTGGAGTGCAGTGC 60.037 55.000 11.78 8.58 42.66 4.40
2772 4496 5.594725 TGGTGTGCTTGGTCAGTAATTTTAA 59.405 36.000 0.00 0.00 0.00 1.52
2782 4506 1.488812 AGTTAGTGGTGTGCTTGGTCA 59.511 47.619 0.00 0.00 0.00 4.02
2799 4523 2.370849 ACCCAACACGGTGAGAATAGTT 59.629 45.455 16.29 0.00 33.77 2.24
2812 4536 3.702330 GTTGCAAGACTTAACCCAACAC 58.298 45.455 0.00 0.00 34.36 3.32
2813 4537 2.356382 CGTTGCAAGACTTAACCCAACA 59.644 45.455 0.00 0.00 33.96 3.33
2814 4538 2.614983 TCGTTGCAAGACTTAACCCAAC 59.385 45.455 0.00 8.80 0.00 3.77
2815 4539 2.875933 CTCGTTGCAAGACTTAACCCAA 59.124 45.455 0.00 0.00 0.00 4.12
2816 4540 2.489971 CTCGTTGCAAGACTTAACCCA 58.510 47.619 0.00 0.00 0.00 4.51
2817 4541 1.197036 GCTCGTTGCAAGACTTAACCC 59.803 52.381 0.00 0.00 42.31 4.11
2818 4542 1.136336 CGCTCGTTGCAAGACTTAACC 60.136 52.381 0.00 0.00 43.06 2.85
2819 4543 1.721804 GCGCTCGTTGCAAGACTTAAC 60.722 52.381 0.00 0.00 43.06 2.01
2820 4544 0.511221 GCGCTCGTTGCAAGACTTAA 59.489 50.000 0.00 0.00 43.06 1.85
2821 4545 0.598942 TGCGCTCGTTGCAAGACTTA 60.599 50.000 9.73 0.00 43.06 2.24
2822 4546 1.436195 TTGCGCTCGTTGCAAGACTT 61.436 50.000 9.73 0.00 46.62 3.01
2823 4547 1.887242 TTGCGCTCGTTGCAAGACT 60.887 52.632 9.73 0.00 46.62 3.24
2824 4548 2.631428 TTGCGCTCGTTGCAAGAC 59.369 55.556 9.73 0.00 46.62 3.01
2828 4552 4.927782 AGGGTTGCGCTCGTTGCA 62.928 61.111 9.73 0.00 43.06 4.08
2829 4553 4.090057 GAGGGTTGCGCTCGTTGC 62.090 66.667 9.73 0.00 34.01 4.17
2834 4558 0.947180 TAAACACGAGGGTTGCGCTC 60.947 55.000 9.73 1.18 39.57 5.03
2835 4559 0.949105 CTAAACACGAGGGTTGCGCT 60.949 55.000 9.73 0.00 0.00 5.92
2836 4560 1.226030 ACTAAACACGAGGGTTGCGC 61.226 55.000 0.00 0.00 0.00 6.09
2837 4561 1.070175 CAACTAAACACGAGGGTTGCG 60.070 52.381 0.00 0.00 32.50 4.85
2838 4562 2.681152 CAACTAAACACGAGGGTTGC 57.319 50.000 0.00 0.00 32.50 4.17
2839 4563 1.265905 GGCAACTAAACACGAGGGTTG 59.734 52.381 0.00 0.00 39.83 3.77
2840 4564 1.134037 TGGCAACTAAACACGAGGGTT 60.134 47.619 0.00 0.00 37.61 4.11
2841 4565 0.470766 TGGCAACTAAACACGAGGGT 59.529 50.000 0.00 0.00 37.61 4.34
2842 4566 0.872388 GTGGCAACTAAACACGAGGG 59.128 55.000 0.00 0.00 37.61 4.30
2843 4567 1.878953 AGTGGCAACTAAACACGAGG 58.121 50.000 0.00 0.00 39.95 4.63
2844 4568 4.242475 TCATAGTGGCAACTAAACACGAG 58.758 43.478 4.72 0.00 42.17 4.18
2845 4569 4.242475 CTCATAGTGGCAACTAAACACGA 58.758 43.478 4.72 0.00 42.17 4.35
2846 4570 3.994392 ACTCATAGTGGCAACTAAACACG 59.006 43.478 4.72 0.00 42.17 4.49
2847 4571 5.941948 AACTCATAGTGGCAACTAAACAC 57.058 39.130 4.72 0.00 42.17 3.32
2848 4572 5.240623 CCAAACTCATAGTGGCAACTAAACA 59.759 40.000 4.72 0.00 42.17 2.83
2849 4573 5.472137 TCCAAACTCATAGTGGCAACTAAAC 59.528 40.000 4.72 0.00 42.17 2.01
2850 4574 5.626142 TCCAAACTCATAGTGGCAACTAAA 58.374 37.500 4.72 0.00 42.17 1.85
2851 4575 5.235850 TCCAAACTCATAGTGGCAACTAA 57.764 39.130 4.72 0.00 42.17 2.24
2852 4576 4.901197 TCCAAACTCATAGTGGCAACTA 57.099 40.909 2.71 2.71 43.04 2.24
2853 4577 3.788227 TCCAAACTCATAGTGGCAACT 57.212 42.857 0.00 0.00 40.67 3.16
2854 4578 3.057526 GGTTCCAAACTCATAGTGGCAAC 60.058 47.826 0.00 0.00 32.10 4.17
2855 4579 3.153919 GGTTCCAAACTCATAGTGGCAA 58.846 45.455 0.00 0.00 32.10 4.52
2856 4580 2.554344 GGGTTCCAAACTCATAGTGGCA 60.554 50.000 0.00 0.00 32.10 4.92
2857 4581 2.092323 GGGTTCCAAACTCATAGTGGC 58.908 52.381 0.00 0.00 32.10 5.01
2858 4582 3.009033 TCAGGGTTCCAAACTCATAGTGG 59.991 47.826 0.00 0.00 33.06 4.00
2859 4583 4.286297 TCAGGGTTCCAAACTCATAGTG 57.714 45.455 0.00 0.00 33.06 2.74
2860 4584 4.104102 TGTTCAGGGTTCCAAACTCATAGT 59.896 41.667 0.00 0.00 33.06 2.12
2861 4585 4.651778 TGTTCAGGGTTCCAAACTCATAG 58.348 43.478 0.00 0.00 33.06 2.23
2862 4586 4.349636 TCTGTTCAGGGTTCCAAACTCATA 59.650 41.667 0.00 0.00 33.06 2.15
2863 4587 3.138283 TCTGTTCAGGGTTCCAAACTCAT 59.862 43.478 0.00 0.00 33.06 2.90
2864 4588 2.507886 TCTGTTCAGGGTTCCAAACTCA 59.492 45.455 0.00 0.00 33.06 3.41
2865 4589 2.879026 GTCTGTTCAGGGTTCCAAACTC 59.121 50.000 0.00 0.00 0.00 3.01
2866 4590 2.422945 GGTCTGTTCAGGGTTCCAAACT 60.423 50.000 0.00 0.00 0.00 2.66
2867 4591 1.954382 GGTCTGTTCAGGGTTCCAAAC 59.046 52.381 0.00 0.00 0.00 2.93
2868 4592 1.133606 GGGTCTGTTCAGGGTTCCAAA 60.134 52.381 0.00 0.00 0.00 3.28
2869 4593 0.476771 GGGTCTGTTCAGGGTTCCAA 59.523 55.000 0.00 0.00 0.00 3.53
2870 4594 1.423794 GGGGTCTGTTCAGGGTTCCA 61.424 60.000 0.00 0.00 0.00 3.53
2871 4595 1.379146 GGGGTCTGTTCAGGGTTCC 59.621 63.158 0.00 0.00 0.00 3.62
2872 4596 1.379146 GGGGGTCTGTTCAGGGTTC 59.621 63.158 0.00 0.00 0.00 3.62
2873 4597 2.526046 CGGGGGTCTGTTCAGGGTT 61.526 63.158 0.00 0.00 0.00 4.11
2874 4598 2.928396 CGGGGGTCTGTTCAGGGT 60.928 66.667 0.00 0.00 0.00 4.34
2875 4599 3.717294 CCGGGGGTCTGTTCAGGG 61.717 72.222 0.00 0.00 0.00 4.45
2876 4600 2.928396 ACCGGGGGTCTGTTCAGG 60.928 66.667 6.32 0.00 0.00 3.86
2877 4601 2.052047 AACACCGGGGGTCTGTTCAG 62.052 60.000 9.50 0.00 31.02 3.02
2878 4602 0.763604 TAACACCGGGGGTCTGTTCA 60.764 55.000 9.50 0.00 31.02 3.18
2879 4603 0.397564 TTAACACCGGGGGTCTGTTC 59.602 55.000 9.50 0.00 31.02 3.18
2880 4604 0.399075 CTTAACACCGGGGGTCTGTT 59.601 55.000 9.50 10.82 31.02 3.16
2881 4605 2.063774 CTTAACACCGGGGGTCTGT 58.936 57.895 9.50 0.00 31.02 3.41
2882 4606 1.376812 GCTTAACACCGGGGGTCTG 60.377 63.158 9.50 0.00 31.02 3.51
2883 4607 2.599757 GGCTTAACACCGGGGGTCT 61.600 63.158 9.50 0.00 31.02 3.85
2884 4608 2.045634 GGCTTAACACCGGGGGTC 60.046 66.667 9.50 0.00 31.02 4.46
2891 4615 0.392595 CCTTCCTCCGGCTTAACACC 60.393 60.000 0.00 0.00 0.00 4.16
2892 4616 0.611714 TCCTTCCTCCGGCTTAACAC 59.388 55.000 0.00 0.00 0.00 3.32
2893 4617 0.902531 CTCCTTCCTCCGGCTTAACA 59.097 55.000 0.00 0.00 0.00 2.41
2894 4618 1.137282 CTCTCCTTCCTCCGGCTTAAC 59.863 57.143 0.00 0.00 0.00 2.01
2895 4619 1.486211 CTCTCCTTCCTCCGGCTTAA 58.514 55.000 0.00 0.00 0.00 1.85
2896 4620 0.397254 CCTCTCCTTCCTCCGGCTTA 60.397 60.000 0.00 0.00 0.00 3.09
2897 4621 1.687493 CCTCTCCTTCCTCCGGCTT 60.687 63.158 0.00 0.00 0.00 4.35
2898 4622 1.955458 ATCCTCTCCTTCCTCCGGCT 61.955 60.000 0.00 0.00 0.00 5.52
2899 4623 1.458588 ATCCTCTCCTTCCTCCGGC 60.459 63.158 0.00 0.00 0.00 6.13
2900 4624 0.105964 TCATCCTCTCCTTCCTCCGG 60.106 60.000 0.00 0.00 0.00 5.14
2901 4625 1.327303 CTCATCCTCTCCTTCCTCCG 58.673 60.000 0.00 0.00 0.00 4.63
2902 4626 1.715785 CCTCATCCTCTCCTTCCTCC 58.284 60.000 0.00 0.00 0.00 4.30
2903 4627 1.047801 GCCTCATCCTCTCCTTCCTC 58.952 60.000 0.00 0.00 0.00 3.71
2904 4628 0.399806 GGCCTCATCCTCTCCTTCCT 60.400 60.000 0.00 0.00 0.00 3.36
2905 4629 0.692419 TGGCCTCATCCTCTCCTTCC 60.692 60.000 3.32 0.00 0.00 3.46
2906 4630 1.140652 CTTGGCCTCATCCTCTCCTTC 59.859 57.143 3.32 0.00 0.00 3.46
2907 4631 1.211456 CTTGGCCTCATCCTCTCCTT 58.789 55.000 3.32 0.00 0.00 3.36
2908 4632 0.043940 ACTTGGCCTCATCCTCTCCT 59.956 55.000 3.32 0.00 0.00 3.69
2909 4633 0.467804 GACTTGGCCTCATCCTCTCC 59.532 60.000 3.32 0.00 0.00 3.71
2910 4634 1.198713 TGACTTGGCCTCATCCTCTC 58.801 55.000 3.32 0.00 0.00 3.20
2911 4635 1.767681 GATGACTTGGCCTCATCCTCT 59.232 52.381 18.45 0.00 38.67 3.69
2912 4636 1.487976 TGATGACTTGGCCTCATCCTC 59.512 52.381 23.63 12.63 42.35 3.71
2913 4637 1.588239 TGATGACTTGGCCTCATCCT 58.412 50.000 23.63 4.96 42.35 3.24
2914 4638 2.228059 CATGATGACTTGGCCTCATCC 58.772 52.381 23.63 11.33 42.35 3.51
2915 4639 1.607628 GCATGATGACTTGGCCTCATC 59.392 52.381 21.14 21.14 43.03 2.92
2916 4640 1.688772 GCATGATGACTTGGCCTCAT 58.311 50.000 3.32 4.72 0.00 2.90
2917 4641 0.394762 GGCATGATGACTTGGCCTCA 60.395 55.000 3.32 0.00 39.56 3.86
2918 4642 2.412605 GGCATGATGACTTGGCCTC 58.587 57.895 3.32 0.00 39.56 4.70
2919 4643 4.672251 GGCATGATGACTTGGCCT 57.328 55.556 3.32 0.00 39.56 5.19
2921 4645 0.685458 AAGGGGCATGATGACTTGGC 60.685 55.000 0.00 0.00 42.82 4.52
2922 4646 2.734755 TAAGGGGCATGATGACTTGG 57.265 50.000 0.00 0.00 0.00 3.61
2923 4647 2.295349 GCATAAGGGGCATGATGACTTG 59.705 50.000 0.00 0.00 0.00 3.16
2924 4648 2.590821 GCATAAGGGGCATGATGACTT 58.409 47.619 0.00 0.64 0.00 3.01
2925 4649 1.202976 GGCATAAGGGGCATGATGACT 60.203 52.381 0.00 0.00 0.00 3.41
2926 4650 1.251251 GGCATAAGGGGCATGATGAC 58.749 55.000 0.00 0.00 0.00 3.06
2927 4651 0.112995 GGGCATAAGGGGCATGATGA 59.887 55.000 0.00 0.00 34.52 2.92
2928 4652 0.113776 AGGGCATAAGGGGCATGATG 59.886 55.000 0.00 0.00 34.52 3.07
2929 4653 0.113776 CAGGGCATAAGGGGCATGAT 59.886 55.000 0.00 0.00 46.49 2.45
2930 4654 1.538167 CAGGGCATAAGGGGCATGA 59.462 57.895 0.00 0.00 46.49 3.07
2931 4655 1.532316 CCAGGGCATAAGGGGCATG 60.532 63.158 0.00 0.00 43.67 4.06
2932 4656 2.782417 CCCAGGGCATAAGGGGCAT 61.782 63.158 0.00 0.00 38.98 4.40
2933 4657 3.428664 CCCAGGGCATAAGGGGCA 61.429 66.667 0.00 0.00 38.98 5.36
2946 4670 3.567478 TAGCACGTGTGTCGCCCAG 62.567 63.158 18.38 0.00 44.19 4.45
2947 4671 3.607661 TAGCACGTGTGTCGCCCA 61.608 61.111 18.38 0.00 44.19 5.36
2948 4672 3.110178 GTAGCACGTGTGTCGCCC 61.110 66.667 18.38 0.00 44.19 6.13
2949 4673 1.289109 ATTGTAGCACGTGTGTCGCC 61.289 55.000 18.38 0.00 44.19 5.54
2950 4674 0.179250 CATTGTAGCACGTGTGTCGC 60.179 55.000 18.38 1.39 44.19 5.19
2951 4675 0.438445 CCATTGTAGCACGTGTGTCG 59.562 55.000 18.38 0.00 46.00 4.35
2952 4676 0.796312 CCCATTGTAGCACGTGTGTC 59.204 55.000 18.38 8.11 0.00 3.67
2953 4677 1.234615 GCCCATTGTAGCACGTGTGT 61.235 55.000 18.38 7.62 0.00 3.72
2954 4678 1.501741 GCCCATTGTAGCACGTGTG 59.498 57.895 18.38 6.00 0.00 3.82
2955 4679 2.032634 CGCCCATTGTAGCACGTGT 61.033 57.895 18.38 6.65 0.00 4.49
2956 4680 2.749865 CCGCCCATTGTAGCACGTG 61.750 63.158 12.28 12.28 0.00 4.49
2957 4681 2.435938 CCGCCCATTGTAGCACGT 60.436 61.111 0.00 0.00 0.00 4.49
2958 4682 3.202001 CCCGCCCATTGTAGCACG 61.202 66.667 0.00 0.00 0.00 5.34
2959 4683 2.112815 GTCCCGCCCATTGTAGCAC 61.113 63.158 0.00 0.00 0.00 4.40
2960 4684 2.130821 TTGTCCCGCCCATTGTAGCA 62.131 55.000 0.00 0.00 0.00 3.49
2961 4685 0.963355 TTTGTCCCGCCCATTGTAGC 60.963 55.000 0.00 0.00 0.00 3.58
2962 4686 1.094785 CTTTGTCCCGCCCATTGTAG 58.905 55.000 0.00 0.00 0.00 2.74
2963 4687 0.322997 CCTTTGTCCCGCCCATTGTA 60.323 55.000 0.00 0.00 0.00 2.41
2964 4688 1.606313 CCTTTGTCCCGCCCATTGT 60.606 57.895 0.00 0.00 0.00 2.71
2965 4689 2.350458 CCCTTTGTCCCGCCCATTG 61.350 63.158 0.00 0.00 0.00 2.82
2966 4690 2.037208 CCCTTTGTCCCGCCCATT 59.963 61.111 0.00 0.00 0.00 3.16
2967 4691 3.264845 ACCCTTTGTCCCGCCCAT 61.265 61.111 0.00 0.00 0.00 4.00
2968 4692 3.961414 GACCCTTTGTCCCGCCCA 61.961 66.667 0.00 0.00 38.09 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.