Multiple sequence alignment - TraesCS7D01G484400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G484400 chr7D 100.000 3219 0 0 1 3219 594731835 594728617 0.000000e+00 5945
1 TraesCS7D01G484400 chr7B 93.359 3147 152 26 94 3219 667072436 667069326 0.000000e+00 4601
2 TraesCS7D01G484400 chr7A 93.282 2620 114 32 123 2721 686936137 686938715 0.000000e+00 3807
3 TraesCS7D01G484400 chr7A 90.845 426 35 3 2796 3219 686938949 686939372 4.660000e-158 568
4 TraesCS7D01G484400 chr2D 85.953 299 40 2 2635 2931 649373826 649373528 5.180000e-83 318
5 TraesCS7D01G484400 chr2D 86.420 162 16 6 1974 2130 450235652 450235812 4.270000e-39 172
6 TraesCS7D01G484400 chr1D 86.667 285 37 1 2648 2931 83163222 83162938 6.700000e-82 315
7 TraesCS7D01G484400 chr1D 85.000 300 41 4 2635 2931 10673075 10673373 5.220000e-78 302
8 TraesCS7D01G484400 chr6A 85.619 299 41 2 2635 2931 601962174 601961876 2.410000e-81 313
9 TraesCS7D01G484400 chr6A 81.494 308 34 18 1018 1309 134949350 134949050 6.940000e-57 231
10 TraesCS7D01G484400 chr6A 90.196 153 13 2 1966 2117 134948347 134948196 7.040000e-47 198
11 TraesCS7D01G484400 chr4D 86.316 285 37 2 2648 2931 425283922 425283639 3.120000e-80 309
12 TraesCS7D01G484400 chr2A 85.763 295 38 4 2635 2926 7915465 7915758 3.120000e-80 309
13 TraesCS7D01G484400 chr2A 85.795 176 17 8 1964 2132 594581062 594581236 2.550000e-41 180
14 TraesCS7D01G484400 chr2A 81.416 226 30 9 1081 1300 594580390 594580609 1.190000e-39 174
15 TraesCS7D01G484400 chr5D 85.000 300 41 4 2635 2931 521864289 521863991 5.220000e-78 302
16 TraesCS7D01G484400 chr2B 85.050 301 39 5 2635 2931 105850050 105849752 5.220000e-78 302
17 TraesCS7D01G484400 chr2B 86.207 174 16 8 1964 2130 530307305 530307477 7.090000e-42 182
18 TraesCS7D01G484400 chr2B 81.776 214 27 9 1093 1300 530306641 530306848 5.520000e-38 169
19 TraesCS7D01G484400 chr6B 81.494 308 34 17 1018 1309 198986205 198985905 6.940000e-57 231
20 TraesCS7D01G484400 chr6B 85.930 199 25 2 1966 2161 198985195 198984997 3.250000e-50 209
21 TraesCS7D01G484400 chr6D 80.519 308 37 17 1018 1309 110444598 110444298 6.990000e-52 215
22 TraesCS7D01G484400 chr6D 89.091 165 15 2 1966 2130 110443600 110443439 5.450000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G484400 chr7D 594728617 594731835 3218 True 5945.0 5945 100.0000 1 3219 1 chr7D.!!$R1 3218
1 TraesCS7D01G484400 chr7B 667069326 667072436 3110 True 4601.0 4601 93.3590 94 3219 1 chr7B.!!$R1 3125
2 TraesCS7D01G484400 chr7A 686936137 686939372 3235 False 2187.5 3807 92.0635 123 3219 2 chr7A.!!$F1 3096
3 TraesCS7D01G484400 chr6A 134948196 134949350 1154 True 214.5 231 85.8450 1018 2117 2 chr6A.!!$R2 1099
4 TraesCS7D01G484400 chr6B 198984997 198986205 1208 True 220.0 231 83.7120 1018 2161 2 chr6B.!!$R1 1143
5 TraesCS7D01G484400 chr6D 110443439 110444598 1159 True 208.5 215 84.8050 1018 2130 2 chr6D.!!$R1 1112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 942 0.042881 ACTCTTCCCTCCCACTACCC 59.957 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2772 3176 1.00534 GTAGTCACCTCGTCGTCGAT 58.995 55.0 5.0 0.0 45.21 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.622004 TCTTAGTAAGAGTCGAAGTACAATTTG 57.378 33.333 8.59 0.00 32.71 2.32
31 32 9.622004 CTTAGTAAGAGTCGAAGTACAATTTGA 57.378 33.333 3.64 0.00 0.00 2.69
32 33 9.970395 TTAGTAAGAGTCGAAGTACAATTTGAA 57.030 29.630 2.79 0.00 0.00 2.69
33 34 8.295569 AGTAAGAGTCGAAGTACAATTTGAAC 57.704 34.615 2.79 0.00 0.00 3.18
34 35 6.541111 AAGAGTCGAAGTACAATTTGAACC 57.459 37.500 2.79 0.00 0.00 3.62
35 36 5.855045 AGAGTCGAAGTACAATTTGAACCT 58.145 37.500 2.79 0.00 0.00 3.50
36 37 5.696724 AGAGTCGAAGTACAATTTGAACCTG 59.303 40.000 2.79 0.00 0.00 4.00
37 38 5.365619 AGTCGAAGTACAATTTGAACCTGT 58.634 37.500 2.79 0.00 0.00 4.00
38 39 6.518493 AGTCGAAGTACAATTTGAACCTGTA 58.482 36.000 2.79 0.00 0.00 2.74
39 40 6.987992 AGTCGAAGTACAATTTGAACCTGTAA 59.012 34.615 2.79 0.00 0.00 2.41
40 41 7.170998 AGTCGAAGTACAATTTGAACCTGTAAG 59.829 37.037 2.79 0.00 0.00 2.34
41 42 6.987992 TCGAAGTACAATTTGAACCTGTAAGT 59.012 34.615 2.79 0.00 0.00 2.24
42 43 7.496591 TCGAAGTACAATTTGAACCTGTAAGTT 59.503 33.333 2.79 0.00 0.00 2.66
43 44 7.586300 CGAAGTACAATTTGAACCTGTAAGTTG 59.414 37.037 2.79 0.00 32.05 3.16
44 45 7.875327 AGTACAATTTGAACCTGTAAGTTGT 57.125 32.000 2.79 0.00 39.21 3.32
45 46 8.288689 AGTACAATTTGAACCTGTAAGTTGTT 57.711 30.769 2.79 0.00 37.70 2.83
46 47 8.188139 AGTACAATTTGAACCTGTAAGTTGTTG 58.812 33.333 2.79 0.00 37.70 3.33
47 48 7.164230 ACAATTTGAACCTGTAAGTTGTTGA 57.836 32.000 2.79 0.00 34.43 3.18
48 49 7.781056 ACAATTTGAACCTGTAAGTTGTTGAT 58.219 30.769 2.79 0.00 34.43 2.57
49 50 7.706179 ACAATTTGAACCTGTAAGTTGTTGATG 59.294 33.333 2.79 0.00 34.43 3.07
50 51 7.581213 ATTTGAACCTGTAAGTTGTTGATGA 57.419 32.000 0.00 0.00 0.00 2.92
51 52 7.397892 TTTGAACCTGTAAGTTGTTGATGAA 57.602 32.000 0.00 0.00 0.00 2.57
52 53 6.371809 TGAACCTGTAAGTTGTTGATGAAC 57.628 37.500 0.00 0.00 0.00 3.18
53 54 6.119536 TGAACCTGTAAGTTGTTGATGAACT 58.880 36.000 0.00 0.00 35.08 3.01
54 55 6.601613 TGAACCTGTAAGTTGTTGATGAACTT 59.398 34.615 0.00 0.00 44.13 2.66
55 56 7.122055 TGAACCTGTAAGTTGTTGATGAACTTT 59.878 33.333 0.00 0.00 40.04 2.66
56 57 7.404671 ACCTGTAAGTTGTTGATGAACTTTT 57.595 32.000 0.00 0.00 40.04 2.27
57 58 8.514330 ACCTGTAAGTTGTTGATGAACTTTTA 57.486 30.769 0.00 0.00 40.04 1.52
58 59 9.131791 ACCTGTAAGTTGTTGATGAACTTTTAT 57.868 29.630 0.00 0.00 40.04 1.40
127 128 0.320421 ATGGGACGTGGCATATACGC 60.320 55.000 0.00 0.00 44.87 4.42
212 215 0.676466 TGATTGCGGGTGTCATGGAC 60.676 55.000 0.00 0.00 0.00 4.02
229 232 5.470098 TCATGGACTTTTCCTTTTTCTCGAG 59.530 40.000 5.93 5.93 43.31 4.04
230 233 5.031066 TGGACTTTTCCTTTTTCTCGAGA 57.969 39.130 12.08 12.08 43.31 4.04
231 234 5.057149 TGGACTTTTCCTTTTTCTCGAGAG 58.943 41.667 15.94 3.64 43.31 3.20
288 291 5.044919 ACCATGATACAGATGGAGGTCAAAA 60.045 40.000 5.78 0.00 42.81 2.44
383 391 2.009774 GCTTGTCTACTACGTACGGGA 58.990 52.381 21.06 6.07 0.00 5.14
450 465 4.517815 TTACATCCCGGACGCGCC 62.518 66.667 5.73 7.90 0.00 6.53
652 667 0.323957 GATGGGATTAGTACCCCGGC 59.676 60.000 0.00 0.00 46.21 6.13
683 698 2.639327 CCCCGAAAAGCCAAGCCAG 61.639 63.158 0.00 0.00 0.00 4.85
920 940 2.233305 TCACTCTTCCCTCCCACTAC 57.767 55.000 0.00 0.00 0.00 2.73
921 941 1.196012 CACTCTTCCCTCCCACTACC 58.804 60.000 0.00 0.00 0.00 3.18
922 942 0.042881 ACTCTTCCCTCCCACTACCC 59.957 60.000 0.00 0.00 0.00 3.69
940 960 4.920112 CCACCACCGCGTTCACCA 62.920 66.667 4.92 0.00 0.00 4.17
961 981 0.531532 CCATTGCCTGTCGGAGCTAG 60.532 60.000 0.00 0.00 0.00 3.42
965 985 2.494530 GCCTGTCGGAGCTAGGAGG 61.495 68.421 3.53 4.03 33.22 4.30
966 986 1.227664 CCTGTCGGAGCTAGGAGGA 59.772 63.158 0.00 0.00 33.22 3.71
967 987 1.104577 CCTGTCGGAGCTAGGAGGAC 61.105 65.000 0.00 0.00 33.22 3.85
968 988 1.076923 TGTCGGAGCTAGGAGGACC 60.077 63.158 0.00 0.00 0.00 4.46
970 990 2.192443 CGGAGCTAGGAGGACCGA 59.808 66.667 1.71 0.00 45.31 4.69
972 992 1.238625 CGGAGCTAGGAGGACCGATC 61.239 65.000 1.71 0.00 45.31 3.69
994 1014 2.923035 ACGTGCAGGGGTGCTAGT 60.923 61.111 11.67 0.00 35.49 2.57
1188 1226 3.695606 GTCTGCGAGGTCAGCCCA 61.696 66.667 0.00 0.00 34.19 5.36
1352 1402 0.745845 GAGGCCATGATGTTCTGCGT 60.746 55.000 5.01 0.00 0.00 5.24
1596 1655 2.047179 GTGGACCTGGACTTCGCC 60.047 66.667 0.00 0.00 0.00 5.54
1638 1712 1.315981 CGCAGACCTACAGCTCCTCA 61.316 60.000 0.00 0.00 0.00 3.86
1692 1766 3.365265 CGCCTCGCCTTTGCCTTT 61.365 61.111 0.00 0.00 0.00 3.11
1918 2108 1.153489 CGTGACTATGCAGCAGGCT 60.153 57.895 0.00 0.00 45.15 4.58
1945 2135 1.628846 GTGGACATGGGGTACTTGACT 59.371 52.381 0.00 0.00 0.00 3.41
2432 2657 6.518493 CCGAAACTAGTAGCCCAAACATATA 58.482 40.000 0.00 0.00 0.00 0.86
2433 2658 7.159372 CCGAAACTAGTAGCCCAAACATATAT 58.841 38.462 0.00 0.00 0.00 0.86
2509 2736 4.492570 CGACAAAACAAGGCTCGATATGAC 60.493 45.833 0.00 0.00 0.00 3.06
2639 2866 8.578151 ACCAAATTAGCTTTATAAAACCGAACA 58.422 29.630 0.00 0.00 0.00 3.18
2646 2873 8.628882 AGCTTTATAAAACCGAACAAATATGC 57.371 30.769 0.00 0.00 0.00 3.14
2679 2906 0.541863 GAGGAACCGTGACATCCCAT 59.458 55.000 0.00 0.00 33.55 4.00
2682 2909 0.541863 GAACCGTGACATCCCATCCT 59.458 55.000 0.00 0.00 0.00 3.24
2691 2919 3.143933 TGACATCCCATCCTATCAGGGTA 59.856 47.826 0.00 0.00 43.31 3.69
2716 2944 2.161855 TCCTGATGCTCGCATTTGTTT 58.838 42.857 5.79 0.00 36.70 2.83
2752 3156 6.157904 TCATGATTTTCGTTGATGCACATTT 58.842 32.000 0.00 0.00 0.00 2.32
2772 3176 1.812686 CGTGGGAGGAGACGTTTCCA 61.813 60.000 25.51 4.24 39.84 3.53
2781 3185 0.453950 AGACGTTTCCATCGACGACG 60.454 55.000 0.00 0.00 41.53 5.12
2793 3197 1.423056 GACGACGAGGTGACTACGG 59.577 63.158 0.00 0.00 44.43 4.02
2827 3231 2.936919 TCAAGATGATATGCCGGCTT 57.063 45.000 29.70 24.47 0.00 4.35
2843 3247 1.275573 GGCTTAGTCTTTCGGAGGTGT 59.724 52.381 0.00 0.00 0.00 4.16
2861 3265 5.586877 AGGTGTTCATAGAGGTAAGGTGTA 58.413 41.667 0.00 0.00 0.00 2.90
2889 3293 3.064820 GTGCGTTTATAGGGGTGAATGTG 59.935 47.826 0.00 0.00 0.00 3.21
2894 3298 6.053005 CGTTTATAGGGGTGAATGTGTACAT 58.947 40.000 0.00 0.00 38.41 2.29
3153 3560 6.038161 TCCTCACGCAAATATAAATTGTCCTG 59.962 38.462 4.22 0.00 0.00 3.86
3174 3581 5.392919 CCTGACAAACATTCGATTTGCCATA 60.393 40.000 9.36 0.00 40.10 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.622004 CAAATTGTACTTCGACTCTTACTAAGA 57.378 33.333 0.00 0.00 35.87 2.10
5 6 9.622004 TCAAATTGTACTTCGACTCTTACTAAG 57.378 33.333 0.00 0.00 0.00 2.18
6 7 9.970395 TTCAAATTGTACTTCGACTCTTACTAA 57.030 29.630 0.00 0.00 0.00 2.24
7 8 9.403110 GTTCAAATTGTACTTCGACTCTTACTA 57.597 33.333 0.00 0.00 0.00 1.82
8 9 7.384387 GGTTCAAATTGTACTTCGACTCTTACT 59.616 37.037 2.93 0.00 0.00 2.24
9 10 7.384387 AGGTTCAAATTGTACTTCGACTCTTAC 59.616 37.037 2.93 0.00 0.00 2.34
10 11 7.384115 CAGGTTCAAATTGTACTTCGACTCTTA 59.616 37.037 2.93 0.00 0.00 2.10
11 12 6.202954 CAGGTTCAAATTGTACTTCGACTCTT 59.797 38.462 2.93 0.00 0.00 2.85
12 13 5.696724 CAGGTTCAAATTGTACTTCGACTCT 59.303 40.000 2.93 0.00 0.00 3.24
13 14 5.465724 ACAGGTTCAAATTGTACTTCGACTC 59.534 40.000 2.93 0.00 0.00 3.36
14 15 5.365619 ACAGGTTCAAATTGTACTTCGACT 58.634 37.500 2.93 0.00 0.00 4.18
15 16 5.668558 ACAGGTTCAAATTGTACTTCGAC 57.331 39.130 2.93 0.00 0.00 4.20
16 17 6.987992 ACTTACAGGTTCAAATTGTACTTCGA 59.012 34.615 2.93 0.00 0.00 3.71
17 18 7.186021 ACTTACAGGTTCAAATTGTACTTCG 57.814 36.000 2.93 0.00 0.00 3.79
18 19 8.403236 ACAACTTACAGGTTCAAATTGTACTTC 58.597 33.333 2.93 0.00 0.00 3.01
19 20 8.288689 ACAACTTACAGGTTCAAATTGTACTT 57.711 30.769 2.93 0.00 0.00 2.24
20 21 7.875327 ACAACTTACAGGTTCAAATTGTACT 57.125 32.000 2.93 0.00 0.00 2.73
21 22 8.185505 TCAACAACTTACAGGTTCAAATTGTAC 58.814 33.333 0.00 0.00 0.00 2.90
22 23 8.282455 TCAACAACTTACAGGTTCAAATTGTA 57.718 30.769 0.00 0.00 0.00 2.41
23 24 7.164230 TCAACAACTTACAGGTTCAAATTGT 57.836 32.000 0.00 0.00 0.00 2.71
24 25 7.920151 TCATCAACAACTTACAGGTTCAAATTG 59.080 33.333 0.00 0.00 0.00 2.32
25 26 8.006298 TCATCAACAACTTACAGGTTCAAATT 57.994 30.769 0.00 0.00 0.00 1.82
26 27 7.581213 TCATCAACAACTTACAGGTTCAAAT 57.419 32.000 0.00 0.00 0.00 2.32
27 28 7.122055 AGTTCATCAACAACTTACAGGTTCAAA 59.878 33.333 0.00 0.00 34.60 2.69
28 29 6.601613 AGTTCATCAACAACTTACAGGTTCAA 59.398 34.615 0.00 0.00 34.60 2.69
29 30 6.119536 AGTTCATCAACAACTTACAGGTTCA 58.880 36.000 0.00 0.00 34.60 3.18
30 31 6.619801 AGTTCATCAACAACTTACAGGTTC 57.380 37.500 0.00 0.00 34.60 3.62
31 32 7.404671 AAAGTTCATCAACAACTTACAGGTT 57.595 32.000 0.00 0.00 42.14 3.50
32 33 7.404671 AAAAGTTCATCAACAACTTACAGGT 57.595 32.000 0.00 0.00 42.14 4.00
88 89 9.609346 GTCCCATATGTTGTACTGTACTAAATT 57.391 33.333 17.98 3.23 0.00 1.82
89 90 7.924412 CGTCCCATATGTTGTACTGTACTAAAT 59.076 37.037 17.98 13.44 0.00 1.40
90 91 7.093814 ACGTCCCATATGTTGTACTGTACTAAA 60.094 37.037 17.98 7.09 0.00 1.85
91 92 6.377996 ACGTCCCATATGTTGTACTGTACTAA 59.622 38.462 17.98 8.65 0.00 2.24
92 93 5.887598 ACGTCCCATATGTTGTACTGTACTA 59.112 40.000 17.98 8.64 0.00 1.82
109 110 1.068417 GCGTATATGCCACGTCCCA 59.932 57.895 5.56 0.00 41.41 4.37
127 128 0.611896 ACAGGCCCGAAAAAGATGGG 60.612 55.000 0.00 0.00 46.22 4.00
229 232 4.755123 TGTACAAAGCACTAGCCTTTTCTC 59.245 41.667 0.00 2.40 43.56 2.87
230 233 4.714632 TGTACAAAGCACTAGCCTTTTCT 58.285 39.130 0.00 0.00 43.56 2.52
231 234 5.432885 TTGTACAAAGCACTAGCCTTTTC 57.567 39.130 5.64 2.91 43.56 2.29
288 291 4.386867 TCGTATCTCTGCGAAATTTCCT 57.613 40.909 12.54 0.00 36.53 3.36
383 391 0.249322 GTGCCGACGTGGTATATGCT 60.249 55.000 0.00 0.00 41.21 3.79
471 486 1.217244 GGGCTGGCTGATTTTGCTG 59.783 57.895 0.00 0.00 0.00 4.41
567 582 3.487202 CCGTGAACCGTGATGCCG 61.487 66.667 0.00 0.00 33.66 5.69
576 591 4.355925 GACTGGTGTCCGTGAACC 57.644 61.111 0.00 0.00 37.24 3.62
940 960 2.270205 CTCCGACAGGCAATGGCT 59.730 61.111 2.53 2.53 40.87 4.75
961 981 2.544698 CGTCCTCGATCGGTCCTCC 61.545 68.421 16.41 0.00 39.71 4.30
965 985 2.278013 GCACGTCCTCGATCGGTC 60.278 66.667 16.41 2.74 40.62 4.79
966 986 3.052620 CTGCACGTCCTCGATCGGT 62.053 63.158 16.41 1.20 40.62 4.69
967 987 2.278206 CTGCACGTCCTCGATCGG 60.278 66.667 16.41 5.93 40.62 4.18
968 988 2.278206 CCTGCACGTCCTCGATCG 60.278 66.667 9.36 9.36 40.62 3.69
970 990 3.461773 CCCCTGCACGTCCTCGAT 61.462 66.667 0.00 0.00 40.62 3.59
972 992 4.742201 CACCCCTGCACGTCCTCG 62.742 72.222 0.00 0.00 43.34 4.63
1245 1283 2.282887 GGGTTGGCGTGGTGGATT 60.283 61.111 0.00 0.00 0.00 3.01
1622 1696 3.292460 GTGTATGAGGAGCTGTAGGTCT 58.708 50.000 10.51 0.00 41.88 3.85
1818 1935 2.656651 CGATCTCGAAGCTGCCCG 60.657 66.667 0.00 0.22 43.02 6.13
1819 1936 2.808315 TCGATCTCGAAGCTGCCC 59.192 61.111 0.00 0.00 46.30 5.36
1918 2108 4.402528 CCCATGTCCACCGGCGAA 62.403 66.667 9.30 0.00 0.00 4.70
2509 2736 1.148157 ACAAGAGCATTCGCGATCGG 61.148 55.000 18.30 7.26 45.49 4.18
2564 2791 1.925946 GCATGCACAGTTGAACGGAAC 60.926 52.381 14.21 0.00 0.00 3.62
2633 2860 1.740585 TCCAACCGCATATTTGTTCGG 59.259 47.619 0.00 0.00 46.61 4.30
2639 2866 4.787551 TCTAACCATCCAACCGCATATTT 58.212 39.130 0.00 0.00 0.00 1.40
2646 2873 2.629051 GTTCCTCTAACCATCCAACCG 58.371 52.381 0.00 0.00 31.38 4.44
2691 2919 2.048444 ATGCGAGCATCAGGATTTGT 57.952 45.000 4.52 0.00 33.17 2.83
2737 3141 2.592796 CACGAAATGTGCATCAACGA 57.407 45.000 0.00 0.00 42.70 3.85
2752 3156 1.530013 GGAAACGTCTCCTCCCACGA 61.530 60.000 0.00 0.00 39.38 4.35
2772 3176 1.005340 GTAGTCACCTCGTCGTCGAT 58.995 55.000 5.00 0.00 45.21 3.59
2781 3185 1.135746 CGAAGTCACCGTAGTCACCTC 60.136 57.143 0.00 0.00 0.00 3.85
2787 3191 5.531634 TGAAATTTACGAAGTCACCGTAGT 58.468 37.500 0.00 0.00 43.93 2.73
2827 3231 5.258841 TCTATGAACACCTCCGAAAGACTA 58.741 41.667 0.00 0.00 0.00 2.59
2843 3247 6.439375 ACACATGTACACCTTACCTCTATGAA 59.561 38.462 0.00 0.00 0.00 2.57
2861 3265 2.026636 ACCCCTATAAACGCACACATGT 60.027 45.455 0.00 0.00 0.00 3.21
2889 3293 5.609088 GCAAGCGCTTATATACACATGTAC 58.391 41.667 24.55 0.00 31.83 2.90
2894 3298 2.792674 GACGCAAGCGCTTATATACACA 59.207 45.455 24.55 0.00 44.19 3.72
2964 3371 1.745489 GTTCAGTGGACATCCGGGC 60.745 63.158 0.00 0.00 39.43 6.13
3009 3416 3.687212 CACAAGTTGCCATGATAACCGTA 59.313 43.478 1.81 0.00 0.00 4.02
3153 3560 6.092748 AGTTATGGCAAATCGAATGTTTGTC 58.907 36.000 7.47 7.47 40.58 3.18
3174 3581 4.985538 ATCCGACGTCAGATCTTTAGTT 57.014 40.909 17.16 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.