Multiple sequence alignment - TraesCS7D01G484000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G484000 chr7D 100.000 3812 0 0 1 3812 594025528 594021717 0.000000e+00 7040.0
1 TraesCS7D01G484000 chr7D 92.604 1352 83 7 958 2301 594130548 594131890 0.000000e+00 1927.0
2 TraesCS7D01G484000 chr7D 93.614 689 25 5 3060 3734 13721149 13721832 0.000000e+00 1011.0
3 TraesCS7D01G484000 chr7D 84.242 660 58 18 3059 3703 15131119 15131747 5.450000e-168 601.0
4 TraesCS7D01G484000 chr7D 75.990 1212 248 30 996 2196 594071776 594072955 1.530000e-163 586.0
5 TraesCS7D01G484000 chr7D 74.547 1214 251 40 996 2196 594062726 594063894 9.580000e-131 477.0
6 TraesCS7D01G484000 chr7D 74.208 1295 240 53 977 2222 593666707 593665458 4.490000e-124 455.0
7 TraesCS7D01G484000 chr7D 82.410 415 60 11 58 469 16064118 16064522 2.180000e-92 350.0
8 TraesCS7D01G484000 chr7D 87.912 273 18 4 2789 3059 594133623 594133882 1.330000e-79 307.0
9 TraesCS7D01G484000 chr7D 79.348 368 68 8 1830 2195 594013611 594013250 6.320000e-63 252.0
10 TraesCS7D01G484000 chr7D 93.407 91 6 0 477 567 33094528 33094618 6.640000e-28 135.0
11 TraesCS7D01G484000 chr7D 96.923 65 2 0 3745 3809 594133873 594133937 4.030000e-20 110.0
12 TraesCS7D01G484000 chr2D 93.948 694 20 4 3058 3734 305521845 305521157 0.000000e+00 1029.0
13 TraesCS7D01G484000 chr2D 86.735 98 13 0 468 565 648246854 648246951 4.030000e-20 110.0
14 TraesCS7D01G484000 chr3D 93.705 699 17 9 3059 3747 555479547 555478866 0.000000e+00 1022.0
15 TraesCS7D01G484000 chr3D 83.092 414 58 9 58 469 584814339 584813936 2.160000e-97 366.0
16 TraesCS7D01G484000 chr6D 93.833 681 22 5 3071 3734 248582986 248582309 0.000000e+00 1007.0
17 TraesCS7D01G484000 chr6B 92.980 698 16 6 3068 3755 547721517 547722191 0.000000e+00 987.0
18 TraesCS7D01G484000 chr6B 89.369 301 27 5 160 457 666777579 666777877 1.290000e-99 374.0
19 TraesCS7D01G484000 chr6B 81.115 323 31 16 558 854 565054462 565054780 8.240000e-57 231.0
20 TraesCS7D01G484000 chr3B 93.255 682 23 12 3068 3738 631963625 631964294 0.000000e+00 983.0
21 TraesCS7D01G484000 chr3B 83.880 366 42 13 95 452 15992516 15992872 2.190000e-87 333.0
22 TraesCS7D01G484000 chr4B 92.075 694 34 4 3068 3751 415720112 415720794 0.000000e+00 957.0
23 TraesCS7D01G484000 chr4B 91.787 694 36 4 3068 3751 415666589 415667271 0.000000e+00 946.0
24 TraesCS7D01G484000 chr1D 92.511 681 22 5 3068 3738 314715348 314716009 0.000000e+00 948.0
25 TraesCS7D01G484000 chr1D 84.553 369 42 11 78 440 387803415 387803056 6.060000e-93 351.0
26 TraesCS7D01G484000 chr7A 90.014 691 29 12 3059 3749 296563204 296563854 0.000000e+00 857.0
27 TraesCS7D01G484000 chr7A 84.289 401 45 11 73 469 675126616 675126230 3.600000e-100 375.0
28 TraesCS7D01G484000 chr7A 95.722 187 8 0 2856 3042 686369203 686369389 6.190000e-78 302.0
29 TraesCS7D01G484000 chr7A 76.129 465 86 18 1743 2196 686565546 686565996 1.780000e-53 220.0
30 TraesCS7D01G484000 chr7A 77.692 260 45 8 1831 2084 686371064 686371316 3.070000e-31 147.0
31 TraesCS7D01G484000 chr7A 87.379 103 11 2 470 571 136799553 136799654 2.410000e-22 117.0
32 TraesCS7D01G484000 chr7A 84.259 108 16 1 468 575 461796981 461796875 1.870000e-18 104.0
33 TraesCS7D01G484000 chr7A 96.154 52 2 0 3758 3809 686369394 686369445 6.780000e-13 86.1
34 TraesCS7D01G484000 chr7B 74.106 1398 281 60 979 2335 667320584 667321941 5.690000e-138 501.0
35 TraesCS7D01G484000 chr7B 81.903 431 52 13 958 1363 667311272 667311701 1.310000e-89 340.0
36 TraesCS7D01G484000 chr7B 78.191 188 33 5 2016 2196 667317607 667317793 3.110000e-21 113.0
37 TraesCS7D01G484000 chr5D 86.902 397 38 11 78 469 453013258 453012871 2.100000e-117 433.0
38 TraesCS7D01G484000 chr5D 85.619 299 34 8 558 854 453012872 453012581 4.780000e-79 305.0
39 TraesCS7D01G484000 chr5D 85.281 231 29 5 628 854 414333688 414333917 2.290000e-57 233.0
40 TraesCS7D01G484000 chr5D 93.750 48 3 0 899 946 406830163 406830210 5.280000e-09 73.1
41 TraesCS7D01G484000 chr1A 86.260 393 45 7 78 467 577984570 577984956 5.890000e-113 418.0
42 TraesCS7D01G484000 chr1A 82.796 279 31 14 588 854 577984997 577985270 2.290000e-57 233.0
43 TraesCS7D01G484000 chr1A 89.888 89 9 0 478 566 398058571 398058483 8.650000e-22 115.0
44 TraesCS7D01G484000 chr5A 82.776 389 47 17 74 452 417052834 417052456 2.840000e-86 329.0
45 TraesCS7D01G484000 chr5A 85.281 231 29 5 628 854 417052223 417051994 2.290000e-57 233.0
46 TraesCS7D01G484000 chr4D 84.274 248 28 8 611 854 34068367 34068127 8.240000e-57 231.0
47 TraesCS7D01G484000 chr1B 84.979 233 29 6 628 856 647306148 647305918 8.240000e-57 231.0
48 TraesCS7D01G484000 chr1B 88.660 97 11 0 470 566 662547557 662547461 6.690000e-23 119.0
49 TraesCS7D01G484000 chr3A 83.206 262 33 11 597 854 492202449 492202195 2.960000e-56 230.0
50 TraesCS7D01G484000 chr3A 87.629 97 10 2 469 564 380910443 380910348 1.120000e-20 111.0
51 TraesCS7D01G484000 chr2B 80.351 285 43 10 577 854 470524659 470524381 1.800000e-48 204.0
52 TraesCS7D01G484000 chr4A 91.753 97 8 0 470 566 7123731 7123827 6.640000e-28 135.0
53 TraesCS7D01G484000 chr2A 88.542 96 9 2 468 562 194551952 194551858 8.650000e-22 115.0
54 TraesCS7D01G484000 chr2A 84.259 108 16 1 468 575 537475973 537475867 1.870000e-18 104.0
55 TraesCS7D01G484000 chr6A 78.146 151 24 6 1051 1195 3310073 3310220 1.890000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G484000 chr7D 594021717 594025528 3811 True 7040.000000 7040 100.000000 1 3812 1 chr7D.!!$R3 3811
1 TraesCS7D01G484000 chr7D 13721149 13721832 683 False 1011.000000 1011 93.614000 3060 3734 1 chr7D.!!$F1 674
2 TraesCS7D01G484000 chr7D 594130548 594133937 3389 False 781.333333 1927 92.479667 958 3809 3 chr7D.!!$F7 2851
3 TraesCS7D01G484000 chr7D 15131119 15131747 628 False 601.000000 601 84.242000 3059 3703 1 chr7D.!!$F2 644
4 TraesCS7D01G484000 chr7D 594071776 594072955 1179 False 586.000000 586 75.990000 996 2196 1 chr7D.!!$F6 1200
5 TraesCS7D01G484000 chr7D 594062726 594063894 1168 False 477.000000 477 74.547000 996 2196 1 chr7D.!!$F5 1200
6 TraesCS7D01G484000 chr7D 593665458 593666707 1249 True 455.000000 455 74.208000 977 2222 1 chr7D.!!$R1 1245
7 TraesCS7D01G484000 chr2D 305521157 305521845 688 True 1029.000000 1029 93.948000 3058 3734 1 chr2D.!!$R1 676
8 TraesCS7D01G484000 chr3D 555478866 555479547 681 True 1022.000000 1022 93.705000 3059 3747 1 chr3D.!!$R1 688
9 TraesCS7D01G484000 chr6D 248582309 248582986 677 True 1007.000000 1007 93.833000 3071 3734 1 chr6D.!!$R1 663
10 TraesCS7D01G484000 chr6B 547721517 547722191 674 False 987.000000 987 92.980000 3068 3755 1 chr6B.!!$F1 687
11 TraesCS7D01G484000 chr3B 631963625 631964294 669 False 983.000000 983 93.255000 3068 3738 1 chr3B.!!$F2 670
12 TraesCS7D01G484000 chr4B 415720112 415720794 682 False 957.000000 957 92.075000 3068 3751 1 chr4B.!!$F2 683
13 TraesCS7D01G484000 chr4B 415666589 415667271 682 False 946.000000 946 91.787000 3068 3751 1 chr4B.!!$F1 683
14 TraesCS7D01G484000 chr1D 314715348 314716009 661 False 948.000000 948 92.511000 3068 3738 1 chr1D.!!$F1 670
15 TraesCS7D01G484000 chr7A 296563204 296563854 650 False 857.000000 857 90.014000 3059 3749 1 chr7A.!!$F2 690
16 TraesCS7D01G484000 chr7B 667317607 667321941 4334 False 307.000000 501 76.148500 979 2335 2 chr7B.!!$F2 1356
17 TraesCS7D01G484000 chr5D 453012581 453013258 677 True 369.000000 433 86.260500 78 854 2 chr5D.!!$R1 776
18 TraesCS7D01G484000 chr1A 577984570 577985270 700 False 325.500000 418 84.528000 78 854 2 chr1A.!!$F1 776
19 TraesCS7D01G484000 chr5A 417051994 417052834 840 True 281.000000 329 84.028500 74 854 2 chr5A.!!$R1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 1072 0.107459 CCTCCAAGACTAAGCTGGCC 60.107 60.0 0.0 0.0 0.00 5.36 F
1762 3812 0.108615 CCTGCTAGACCTTGTGTCCG 60.109 60.0 0.0 0.0 45.68 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 4064 0.034574 ACCGCATGCATCCTGGTAAA 60.035 50.000 19.57 0.0 0.0 2.01 R
3349 6759 1.383803 ACCTCCATGCCTCCTCCTC 60.384 63.158 0.00 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.701956 GGTCTGTATTTGGGATGTGTTG 57.298 45.455 0.00 0.00 0.00 3.33
22 23 3.443681 GGTCTGTATTTGGGATGTGTTGG 59.556 47.826 0.00 0.00 0.00 3.77
23 24 4.331968 GTCTGTATTTGGGATGTGTTGGA 58.668 43.478 0.00 0.00 0.00 3.53
25 26 4.078537 CTGTATTTGGGATGTGTTGGACA 58.921 43.478 0.00 0.00 39.53 4.02
26 27 4.078537 TGTATTTGGGATGTGTTGGACAG 58.921 43.478 0.00 0.00 38.23 3.51
27 28 1.327303 TTTGGGATGTGTTGGACAGC 58.673 50.000 0.00 0.00 40.49 4.40
30 31 4.819783 GATGTGTTGGACAGCCCA 57.180 55.556 0.00 0.00 44.93 5.36
38 39 3.837893 TGGACAGCCCAAATGTTCA 57.162 47.368 0.00 0.00 43.29 3.18
39 40 2.307496 TGGACAGCCCAAATGTTCAT 57.693 45.000 0.00 0.00 43.29 2.57
40 41 3.448093 TGGACAGCCCAAATGTTCATA 57.552 42.857 0.00 0.00 43.29 2.15
41 42 3.088532 TGGACAGCCCAAATGTTCATAC 58.911 45.455 0.00 0.00 43.29 2.39
42 43 2.427095 GGACAGCCCAAATGTTCATACC 59.573 50.000 0.00 0.00 34.14 2.73
45 46 2.355756 CAGCCCAAATGTTCATACCGAG 59.644 50.000 0.00 0.00 0.00 4.63
46 47 2.238646 AGCCCAAATGTTCATACCGAGA 59.761 45.455 0.00 0.00 0.00 4.04
48 49 3.873910 CCCAAATGTTCATACCGAGAGT 58.126 45.455 0.00 0.00 0.00 3.24
49 50 3.623060 CCCAAATGTTCATACCGAGAGTG 59.377 47.826 0.00 0.00 0.00 3.51
50 51 4.503910 CCAAATGTTCATACCGAGAGTGA 58.496 43.478 0.00 0.00 0.00 3.41
51 52 4.568359 CCAAATGTTCATACCGAGAGTGAG 59.432 45.833 0.00 0.00 0.00 3.51
52 53 5.410924 CAAATGTTCATACCGAGAGTGAGA 58.589 41.667 0.00 0.00 0.00 3.27
55 56 6.961360 ATGTTCATACCGAGAGTGAGAATA 57.039 37.500 0.00 0.00 0.00 1.75
57 58 6.739112 TGTTCATACCGAGAGTGAGAATATG 58.261 40.000 0.00 0.00 0.00 1.78
58 59 6.546034 TGTTCATACCGAGAGTGAGAATATGA 59.454 38.462 0.00 0.00 0.00 2.15
59 60 7.231519 TGTTCATACCGAGAGTGAGAATATGAT 59.768 37.037 0.00 0.00 30.07 2.45
61 62 7.821652 TCATACCGAGAGTGAGAATATGATTC 58.178 38.462 0.00 0.00 0.00 2.52
62 63 7.667635 TCATACCGAGAGTGAGAATATGATTCT 59.332 37.037 1.34 1.34 0.00 2.40
63 64 8.951243 CATACCGAGAGTGAGAATATGATTCTA 58.049 37.037 1.75 0.00 0.00 2.10
64 65 7.447374 ACCGAGAGTGAGAATATGATTCTAG 57.553 40.000 1.75 0.00 0.00 2.43
65 66 7.001674 ACCGAGAGTGAGAATATGATTCTAGT 58.998 38.462 1.75 0.00 0.00 2.57
66 67 7.174253 ACCGAGAGTGAGAATATGATTCTAGTC 59.826 40.741 1.75 4.41 0.00 2.59
67 68 7.174080 CCGAGAGTGAGAATATGATTCTAGTCA 59.826 40.741 1.75 0.00 0.00 3.41
69 70 8.408043 AGAGTGAGAATATGATTCTAGTCAGG 57.592 38.462 1.75 0.00 0.00 3.86
70 71 6.991938 AGTGAGAATATGATTCTAGTCAGGC 58.008 40.000 1.75 0.00 0.00 4.85
71 72 6.782000 AGTGAGAATATGATTCTAGTCAGGCT 59.218 38.462 1.75 0.00 0.00 4.58
72 73 6.867816 GTGAGAATATGATTCTAGTCAGGCTG 59.132 42.308 8.58 8.58 0.00 4.85
76 77 3.032265 TGATTCTAGTCAGGCTGGCTA 57.968 47.619 25.97 25.97 32.64 3.93
97 98 4.301072 AAGCTAGCCACCTCAAACATTA 57.699 40.909 12.13 0.00 0.00 1.90
107 108 5.357878 CCACCTCAAACATTATACATGCAGT 59.642 40.000 0.00 0.00 0.00 4.40
133 134 7.076362 GCCAAACTTAAAGTAGAAAGTACAGC 58.924 38.462 0.00 0.00 34.91 4.40
135 136 7.170320 CCAAACTTAAAGTAGAAAGTACAGCGA 59.830 37.037 0.00 0.00 34.91 4.93
151 152 8.161699 AGTACAGCGAAAAATCCTTCTTTTTA 57.838 30.769 0.00 0.00 38.19 1.52
490 627 4.503741 AAAACACCCACATGAATCTTCG 57.496 40.909 0.00 0.00 0.00 3.79
492 629 2.426522 ACACCCACATGAATCTTCGTG 58.573 47.619 0.00 9.96 46.89 4.35
511 648 7.937394 TCTTCGTGTAAGATCAGTGATATAGGA 59.063 37.037 5.38 0.00 39.36 2.94
512 649 7.436430 TCGTGTAAGATCAGTGATATAGGAC 57.564 40.000 5.38 3.32 0.00 3.85
513 650 7.225011 TCGTGTAAGATCAGTGATATAGGACT 58.775 38.462 5.38 0.00 0.00 3.85
514 651 7.720074 TCGTGTAAGATCAGTGATATAGGACTT 59.280 37.037 5.38 6.66 0.00 3.01
534 671 9.014297 AGGACTTAAATATGCAATACTTATGGC 57.986 33.333 0.00 0.00 33.16 4.40
535 672 8.792633 GGACTTAAATATGCAATACTTATGGCA 58.207 33.333 0.69 0.69 45.92 4.92
545 682 8.953368 TGCAATACTTATGGCATATCTAGATG 57.047 34.615 15.79 2.00 37.70 2.90
546 683 8.542926 TGCAATACTTATGGCATATCTAGATGT 58.457 33.333 15.79 5.75 37.70 3.06
547 684 8.824781 GCAATACTTATGGCATATCTAGATGTG 58.175 37.037 21.61 21.61 32.79 3.21
555 692 6.591001 TGGCATATCTAGATGTGTTTTAGCA 58.409 36.000 25.01 0.00 33.21 3.49
556 693 7.053498 TGGCATATCTAGATGTGTTTTAGCAA 58.947 34.615 25.01 5.92 33.21 3.91
557 694 7.555914 TGGCATATCTAGATGTGTTTTAGCAAA 59.444 33.333 25.01 5.07 33.21 3.68
558 695 8.405531 GGCATATCTAGATGTGTTTTAGCAAAA 58.594 33.333 25.01 0.00 33.21 2.44
632 789 8.956533 TGAAAAAGGAAACATAAAAGAAAGGG 57.043 30.769 0.00 0.00 0.00 3.95
640 797 7.936847 GGAAACATAAAAGAAAGGGACCAAAAT 59.063 33.333 0.00 0.00 0.00 1.82
688 846 9.760660 CAAAATAATTGAAAACCGACAAAACAA 57.239 25.926 0.00 0.00 0.00 2.83
750 913 0.246360 AAAGGCCGCAATAAACCAGC 59.754 50.000 0.00 0.00 0.00 4.85
757 921 2.288152 CCGCAATAAACCAGCAAACAGT 60.288 45.455 0.00 0.00 0.00 3.55
862 1028 4.972875 GGATCTGCCTGGTTGGAG 57.027 61.111 0.00 0.00 38.35 3.86
864 1030 1.225704 GATCTGCCTGGTTGGAGGG 59.774 63.158 0.00 0.00 38.35 4.30
866 1032 3.260100 CTGCCTGGTTGGAGGGGT 61.260 66.667 0.00 0.00 38.35 4.95
867 1033 3.256960 TGCCTGGTTGGAGGGGTC 61.257 66.667 0.00 0.00 38.35 4.46
868 1034 2.936032 GCCTGGTTGGAGGGGTCT 60.936 66.667 0.00 0.00 38.35 3.85
869 1035 2.972819 GCCTGGTTGGAGGGGTCTC 61.973 68.421 0.00 0.00 38.35 3.36
870 1036 2.660064 CCTGGTTGGAGGGGTCTCG 61.660 68.421 0.00 0.00 40.85 4.04
871 1037 3.316573 CTGGTTGGAGGGGTCTCGC 62.317 68.421 0.00 0.00 40.85 5.03
872 1038 3.003763 GGTTGGAGGGGTCTCGCT 61.004 66.667 0.00 0.00 40.85 4.93
873 1039 2.266055 GTTGGAGGGGTCTCGCTG 59.734 66.667 0.00 0.00 40.85 5.18
874 1040 2.203788 TTGGAGGGGTCTCGCTGT 60.204 61.111 0.00 0.00 40.85 4.40
875 1041 1.077805 TTGGAGGGGTCTCGCTGTA 59.922 57.895 0.00 0.00 40.85 2.74
876 1042 0.970937 TTGGAGGGGTCTCGCTGTAG 60.971 60.000 0.00 0.00 40.85 2.74
877 1043 2.128507 GGAGGGGTCTCGCTGTAGG 61.129 68.421 0.00 0.00 40.85 3.18
878 1044 1.380112 GAGGGGTCTCGCTGTAGGT 60.380 63.158 0.00 0.00 36.23 3.08
879 1045 1.668101 GAGGGGTCTCGCTGTAGGTG 61.668 65.000 0.00 0.00 36.23 4.00
880 1046 2.184579 GGGTCTCGCTGTAGGTGC 59.815 66.667 0.00 0.00 0.00 5.01
881 1047 2.184579 GGTCTCGCTGTAGGTGCC 59.815 66.667 0.00 0.00 0.00 5.01
882 1048 2.184579 GTCTCGCTGTAGGTGCCC 59.815 66.667 0.00 0.00 0.00 5.36
883 1049 3.075005 TCTCGCTGTAGGTGCCCC 61.075 66.667 0.00 0.00 0.00 5.80
886 1052 2.436646 CGCTGTAGGTGCCCCAAG 60.437 66.667 0.00 0.00 0.00 3.61
888 1054 2.044946 CTGTAGGTGCCCCAAGCC 60.045 66.667 0.00 0.00 42.71 4.35
889 1055 2.531685 TGTAGGTGCCCCAAGCCT 60.532 61.111 0.00 0.00 42.71 4.58
890 1056 2.272471 GTAGGTGCCCCAAGCCTC 59.728 66.667 0.00 0.00 42.71 4.70
891 1057 3.015145 TAGGTGCCCCAAGCCTCC 61.015 66.667 0.00 0.00 42.71 4.30
892 1058 3.881926 TAGGTGCCCCAAGCCTCCA 62.882 63.158 0.00 0.00 42.71 3.86
894 1060 2.677875 GTGCCCCAAGCCTCCAAG 60.678 66.667 0.00 0.00 42.71 3.61
897 1063 2.911926 GCCCCAAGCCTCCAAGACT 61.912 63.158 0.00 0.00 34.35 3.24
898 1064 1.562672 GCCCCAAGCCTCCAAGACTA 61.563 60.000 0.00 0.00 34.35 2.59
899 1065 0.991920 CCCCAAGCCTCCAAGACTAA 59.008 55.000 0.00 0.00 0.00 2.24
900 1066 1.065126 CCCCAAGCCTCCAAGACTAAG 60.065 57.143 0.00 0.00 0.00 2.18
901 1067 1.680249 CCCAAGCCTCCAAGACTAAGC 60.680 57.143 0.00 0.00 0.00 3.09
902 1068 1.280421 CCAAGCCTCCAAGACTAAGCT 59.720 52.381 0.00 0.00 0.00 3.74
903 1069 2.354259 CAAGCCTCCAAGACTAAGCTG 58.646 52.381 0.00 0.00 0.00 4.24
904 1070 0.908198 AGCCTCCAAGACTAAGCTGG 59.092 55.000 0.00 0.00 0.00 4.85
905 1071 0.746204 GCCTCCAAGACTAAGCTGGC 60.746 60.000 0.00 0.00 0.00 4.85
906 1072 0.107459 CCTCCAAGACTAAGCTGGCC 60.107 60.000 0.00 0.00 0.00 5.36
907 1073 0.615331 CTCCAAGACTAAGCTGGCCA 59.385 55.000 4.71 4.71 0.00 5.36
908 1074 1.003580 CTCCAAGACTAAGCTGGCCAA 59.996 52.381 7.01 0.00 0.00 4.52
909 1075 1.423541 TCCAAGACTAAGCTGGCCAAA 59.576 47.619 7.01 0.00 0.00 3.28
910 1076 1.541588 CCAAGACTAAGCTGGCCAAAC 59.458 52.381 7.01 1.16 0.00 2.93
911 1077 1.197721 CAAGACTAAGCTGGCCAAACG 59.802 52.381 7.01 0.00 0.00 3.60
912 1078 0.321653 AGACTAAGCTGGCCAAACGG 60.322 55.000 7.01 0.00 0.00 4.44
913 1079 1.303317 ACTAAGCTGGCCAAACGGG 60.303 57.895 7.01 0.00 40.85 5.28
942 1108 4.802051 ATGTCGGCCCGCAAGCAT 62.802 61.111 0.00 0.00 0.00 3.79
943 1109 3.399105 ATGTCGGCCCGCAAGCATA 62.399 57.895 0.00 0.00 0.00 3.14
944 1110 3.573491 GTCGGCCCGCAAGCATAC 61.573 66.667 0.00 0.00 0.00 2.39
946 1112 3.272334 CGGCCCGCAAGCATACTC 61.272 66.667 0.00 0.00 0.00 2.59
947 1113 2.190578 GGCCCGCAAGCATACTCT 59.809 61.111 0.00 0.00 0.00 3.24
948 1114 1.889573 GGCCCGCAAGCATACTCTC 60.890 63.158 0.00 0.00 0.00 3.20
951 1117 1.737838 CCCGCAAGCATACTCTCAAA 58.262 50.000 0.00 0.00 0.00 2.69
953 1119 2.684881 CCCGCAAGCATACTCTCAAATT 59.315 45.455 0.00 0.00 0.00 1.82
954 1120 3.488047 CCCGCAAGCATACTCTCAAATTG 60.488 47.826 0.00 0.00 0.00 2.32
955 1121 3.127548 CCGCAAGCATACTCTCAAATTGT 59.872 43.478 0.00 0.00 0.00 2.71
956 1122 4.093514 CGCAAGCATACTCTCAAATTGTG 58.906 43.478 0.00 0.00 0.00 3.33
964 1130 3.936564 ACTCTCAAATTGTGCTCCTCTC 58.063 45.455 0.00 0.00 0.00 3.20
969 1135 5.771666 TCTCAAATTGTGCTCCTCTCAAATT 59.228 36.000 0.00 0.00 32.66 1.82
994 2994 1.651737 TCCCCAAACCAGATCGAGAA 58.348 50.000 0.00 0.00 0.00 2.87
1223 3227 0.247735 CTCGGCTTCTACGTCGTCAG 60.248 60.000 0.00 0.00 0.00 3.51
1232 3236 1.873270 TACGTCGTCAGCACAGCCAT 61.873 55.000 0.00 0.00 0.00 4.40
1387 3421 0.822164 AACCTTCGAGATGTACCCGG 59.178 55.000 0.00 0.00 0.00 5.73
1466 3506 0.253820 ATCCTCCCAACAGTCCCCAT 60.254 55.000 0.00 0.00 0.00 4.00
1485 3525 2.309528 TTACCAGCATCCATCACGAC 57.690 50.000 0.00 0.00 0.00 4.34
1524 3564 0.457851 GTGAGATCCTCGTCAGTGGG 59.542 60.000 0.00 0.00 32.35 4.61
1567 3607 5.652014 TCCTACTTCTGTTTGGCAATAATGG 59.348 40.000 0.00 0.00 0.00 3.16
1584 3624 2.299993 TGGATAAAGAGCAGCAGACG 57.700 50.000 0.00 0.00 0.00 4.18
1635 3678 2.753247 ACCTGGACCATCTACTCTTCC 58.247 52.381 0.00 0.00 0.00 3.46
1668 3711 4.429854 AATCCCTAGAATTGGACTGCTC 57.570 45.455 0.00 0.00 32.36 4.26
1688 3731 4.142513 GCTCTTGCCTTCTACTTTGATTGG 60.143 45.833 0.00 0.00 0.00 3.16
1692 3735 4.072131 TGCCTTCTACTTTGATTGGTGAC 58.928 43.478 0.00 0.00 0.00 3.67
1693 3736 4.072131 GCCTTCTACTTTGATTGGTGACA 58.928 43.478 0.00 0.00 39.83 3.58
1694 3737 4.083271 GCCTTCTACTTTGATTGGTGACAC 60.083 45.833 0.00 0.00 42.67 3.67
1696 3739 6.464222 CCTTCTACTTTGATTGGTGACACTA 58.536 40.000 5.39 0.00 42.67 2.74
1698 3741 7.607991 CCTTCTACTTTGATTGGTGACACTAAT 59.392 37.037 16.20 16.20 42.67 1.73
1723 3766 3.500448 TCTACAATGTGGCCTTTGTGA 57.500 42.857 21.85 16.02 38.82 3.58
1724 3767 3.826524 TCTACAATGTGGCCTTTGTGAA 58.173 40.909 21.85 11.56 38.82 3.18
1725 3768 2.888834 ACAATGTGGCCTTTGTGAAC 57.111 45.000 15.51 0.00 37.51 3.18
1752 3802 7.493367 ACAGTTATAAGTTGATCCTGCTAGAC 58.507 38.462 0.00 0.00 0.00 2.59
1762 3812 0.108615 CCTGCTAGACCTTGTGTCCG 60.109 60.000 0.00 0.00 45.68 4.79
1801 3851 3.697619 ACTTTCCGGAAGAGGTTAAGG 57.302 47.619 17.97 0.00 38.77 2.69
1803 3853 0.616891 TTCCGGAAGAGGTTAAGGGC 59.383 55.000 14.35 0.00 0.00 5.19
1828 3878 0.730834 CTTCGAGCTGTCACTCACGG 60.731 60.000 0.00 0.00 36.42 4.94
1863 3916 5.009410 GCTTCATCTGATCCATGTAAAAGGG 59.991 44.000 0.00 0.00 0.00 3.95
1920 3979 1.227823 TGGCGTCTCCAACTGGTTG 60.228 57.895 6.50 6.50 43.21 3.77
2005 4064 2.133520 AGGATGGGAGTGATTCAGCAT 58.866 47.619 0.00 0.00 0.00 3.79
2008 4067 4.166725 AGGATGGGAGTGATTCAGCATTTA 59.833 41.667 0.00 0.00 0.00 1.40
2012 4071 3.629398 GGGAGTGATTCAGCATTTACCAG 59.371 47.826 0.00 0.00 0.00 4.00
2014 4073 4.517285 GAGTGATTCAGCATTTACCAGGA 58.483 43.478 0.00 0.00 0.00 3.86
2031 4090 3.067480 GATGCATGCGGTTGGGGTG 62.067 63.158 14.09 0.00 0.00 4.61
2035 4094 1.512230 CATGCGGTTGGGGTGAATG 59.488 57.895 0.00 0.00 0.00 2.67
2037 4096 3.758931 GCGGTTGGGGTGAATGCC 61.759 66.667 0.00 0.00 0.00 4.40
2104 4163 1.586154 TAAGAGCAAGGCGGCAAAGC 61.586 55.000 13.08 12.07 35.83 3.51
2133 4192 3.126831 CAAGATGACGCCAGAGGATAAC 58.873 50.000 0.00 0.00 0.00 1.89
2140 4199 3.938963 GACGCCAGAGGATAACATTTTGA 59.061 43.478 0.00 0.00 0.00 2.69
2200 4259 0.883814 CCCTGCGATGAAGGAGATGC 60.884 60.000 0.00 0.00 36.91 3.91
2202 4261 1.660167 CTGCGATGAAGGAGATGCAA 58.340 50.000 0.00 0.00 31.16 4.08
2216 4278 4.643784 GGAGATGCAAGATCCAACAGAATT 59.356 41.667 9.64 0.00 33.08 2.17
2236 4300 1.376812 CCCTGTACGGTTTGCCTCC 60.377 63.158 0.00 0.00 0.00 4.30
2246 4310 3.054361 ACGGTTTGCCTCCTATCAATCTT 60.054 43.478 0.00 0.00 0.00 2.40
2259 4323 5.768662 CCTATCAATCTTCCTAGTACCGTCA 59.231 44.000 0.00 0.00 0.00 4.35
2278 4342 5.532406 CCGTCATCTATTTTCCAATGTCCAT 59.468 40.000 0.00 0.00 0.00 3.41
2329 5720 8.075574 CGATTTTTATCTTGTGCATATGCCTAA 58.924 33.333 24.54 17.24 41.18 2.69
2332 5723 9.748708 TTTTTATCTTGTGCATATGCCTAATTC 57.251 29.630 24.54 8.73 41.18 2.17
2335 5726 4.823442 TCTTGTGCATATGCCTAATTCTGG 59.177 41.667 24.54 7.78 41.18 3.86
2341 5732 5.300034 TGCATATGCCTAATTCTGGTTCAAG 59.700 40.000 24.54 0.00 41.18 3.02
2348 5739 7.001674 TGCCTAATTCTGGTTCAAGTTTCTAA 58.998 34.615 0.00 0.00 0.00 2.10
2363 5754 9.624697 TCAAGTTTCTAATGCAAATCAACATAC 57.375 29.630 0.00 0.00 0.00 2.39
2364 5755 9.409312 CAAGTTTCTAATGCAAATCAACATACA 57.591 29.630 0.00 0.00 0.00 2.29
2367 5758 9.410556 GTTTCTAATGCAAATCAACATACAAGT 57.589 29.630 0.00 0.00 0.00 3.16
2378 5769 9.747898 AAATCAACATACAAGTACAATCCCTTA 57.252 29.630 0.00 0.00 0.00 2.69
2381 5772 7.822334 TCAACATACAAGTACAATCCCTTAGTG 59.178 37.037 0.00 0.00 0.00 2.74
2383 5774 3.951663 ACAAGTACAATCCCTTAGTGGC 58.048 45.455 0.00 0.00 0.00 5.01
2419 5810 0.470766 TTTACGCTCCCTTGTGTGGT 59.529 50.000 0.00 0.00 32.52 4.16
2420 5811 1.340088 TTACGCTCCCTTGTGTGGTA 58.660 50.000 0.00 0.00 32.52 3.25
2423 5814 1.903860 ACGCTCCCTTGTGTGGTAATA 59.096 47.619 0.00 0.00 0.00 0.98
2425 5816 3.054655 ACGCTCCCTTGTGTGGTAATAAT 60.055 43.478 0.00 0.00 0.00 1.28
2426 5817 3.312421 CGCTCCCTTGTGTGGTAATAATG 59.688 47.826 0.00 0.00 0.00 1.90
2427 5818 3.632145 GCTCCCTTGTGTGGTAATAATGG 59.368 47.826 0.00 0.00 0.00 3.16
2428 5819 4.855340 CTCCCTTGTGTGGTAATAATGGT 58.145 43.478 0.00 0.00 0.00 3.55
2429 5820 5.261216 CTCCCTTGTGTGGTAATAATGGTT 58.739 41.667 0.00 0.00 0.00 3.67
2430 5821 5.013547 TCCCTTGTGTGGTAATAATGGTTG 58.986 41.667 0.00 0.00 0.00 3.77
2431 5822 4.381505 CCCTTGTGTGGTAATAATGGTTGC 60.382 45.833 0.00 0.00 0.00 4.17
2432 5823 4.219507 CCTTGTGTGGTAATAATGGTTGCA 59.780 41.667 0.00 0.00 0.00 4.08
2433 5824 5.279206 CCTTGTGTGGTAATAATGGTTGCAA 60.279 40.000 0.00 0.00 0.00 4.08
2434 5825 5.991933 TGTGTGGTAATAATGGTTGCAAT 57.008 34.783 0.59 0.00 0.00 3.56
2435 5826 5.718146 TGTGTGGTAATAATGGTTGCAATG 58.282 37.500 0.59 0.00 0.00 2.82
2436 5827 5.244851 TGTGTGGTAATAATGGTTGCAATGT 59.755 36.000 0.59 0.00 0.00 2.71
2439 5830 7.815068 GTGTGGTAATAATGGTTGCAATGTTAA 59.185 33.333 0.59 0.00 0.00 2.01
2440 5831 7.815068 TGTGGTAATAATGGTTGCAATGTTAAC 59.185 33.333 0.59 0.00 0.00 2.01
2442 5833 9.244292 TGGTAATAATGGTTGCAATGTTAACTA 57.756 29.630 0.59 0.00 0.00 2.24
2527 5918 8.087136 TGCTATTGTGCAGATTTACATTTTCAA 58.913 29.630 0.00 0.00 38.12 2.69
2601 5992 5.685728 ACCCCATAACTTGAGCTTTAGATC 58.314 41.667 3.33 0.00 0.00 2.75
2602 5993 5.430089 ACCCCATAACTTGAGCTTTAGATCT 59.570 40.000 0.00 0.00 0.00 2.75
2603 5994 6.615726 ACCCCATAACTTGAGCTTTAGATCTA 59.384 38.462 0.00 0.00 0.00 1.98
2606 5997 9.213799 CCCATAACTTGAGCTTTAGATCTATTC 57.786 37.037 2.58 0.87 0.00 1.75
2637 6028 5.413833 TGAGTTGGATTCTTGATTCTTCAGC 59.586 40.000 0.00 0.00 32.27 4.26
2638 6029 5.319453 AGTTGGATTCTTGATTCTTCAGCA 58.681 37.500 0.00 0.00 32.27 4.41
2640 6031 4.654915 TGGATTCTTGATTCTTCAGCACA 58.345 39.130 0.00 0.00 32.27 4.57
2650 6041 3.569194 TCTTCAGCACAAGGTGGTTTA 57.431 42.857 0.00 0.00 41.72 2.01
2654 6045 2.375174 TCAGCACAAGGTGGTTTATCCT 59.625 45.455 0.00 0.00 41.72 3.24
2672 6063 2.106511 TCCTCCTCAAGTTTCAGGGTTG 59.893 50.000 0.00 0.00 0.00 3.77
2673 6064 2.158608 CCTCCTCAAGTTTCAGGGTTGT 60.159 50.000 0.00 0.00 0.00 3.32
2704 6096 7.984422 TTATTATGTACATCAGGATTGCCAG 57.016 36.000 12.68 0.00 36.29 4.85
2705 6097 2.042686 TGTACATCAGGATTGCCAGC 57.957 50.000 0.00 0.00 36.29 4.85
2706 6098 1.561076 TGTACATCAGGATTGCCAGCT 59.439 47.619 0.00 0.00 36.29 4.24
2717 6109 1.761449 TTGCCAGCTGTTGTCTTTGA 58.239 45.000 13.81 0.00 0.00 2.69
2718 6110 1.985473 TGCCAGCTGTTGTCTTTGAT 58.015 45.000 13.81 0.00 0.00 2.57
2719 6111 2.309613 TGCCAGCTGTTGTCTTTGATT 58.690 42.857 13.81 0.00 0.00 2.57
2720 6112 2.694628 TGCCAGCTGTTGTCTTTGATTT 59.305 40.909 13.81 0.00 0.00 2.17
2721 6113 3.054878 GCCAGCTGTTGTCTTTGATTTG 58.945 45.455 13.81 0.00 0.00 2.32
2722 6114 3.243501 GCCAGCTGTTGTCTTTGATTTGA 60.244 43.478 13.81 0.00 0.00 2.69
2723 6115 4.737352 GCCAGCTGTTGTCTTTGATTTGAA 60.737 41.667 13.81 0.00 0.00 2.69
2724 6116 5.350633 CCAGCTGTTGTCTTTGATTTGAAA 58.649 37.500 13.81 0.00 0.00 2.69
2735 6127 9.111613 TGTCTTTGATTTGAAAATTTGAATGCT 57.888 25.926 0.00 0.00 0.00 3.79
2736 6128 9.940166 GTCTTTGATTTGAAAATTTGAATGCTT 57.060 25.926 0.00 0.00 0.00 3.91
2737 6129 9.938670 TCTTTGATTTGAAAATTTGAATGCTTG 57.061 25.926 0.00 0.00 0.00 4.01
2745 6137 8.715191 TGAAAATTTGAATGCTTGTGTAACTT 57.285 26.923 0.00 0.00 38.04 2.66
2752 6144 8.795786 TTGAATGCTTGTGTAACTTTATTGTC 57.204 30.769 0.00 0.00 38.04 3.18
2754 6146 9.278978 TGAATGCTTGTGTAACTTTATTGTCTA 57.721 29.630 0.00 0.00 38.04 2.59
2755 6147 9.760660 GAATGCTTGTGTAACTTTATTGTCTAG 57.239 33.333 0.00 0.00 38.04 2.43
2756 6148 9.502091 AATGCTTGTGTAACTTTATTGTCTAGA 57.498 29.630 0.00 0.00 38.04 2.43
2757 6149 8.896320 TGCTTGTGTAACTTTATTGTCTAGAA 57.104 30.769 0.00 0.00 38.04 2.10
2758 6150 9.332502 TGCTTGTGTAACTTTATTGTCTAGAAA 57.667 29.630 0.00 0.00 38.04 2.52
2759 6151 9.813080 GCTTGTGTAACTTTATTGTCTAGAAAG 57.187 33.333 0.00 0.00 38.04 2.62
2762 6154 9.485206 TGTGTAACTTTATTGTCTAGAAAGGAC 57.515 33.333 0.00 0.00 38.04 3.85
2763 6155 9.485206 GTGTAACTTTATTGTCTAGAAAGGACA 57.515 33.333 0.00 1.08 41.23 4.02
2764 6156 9.706691 TGTAACTTTATTGTCTAGAAAGGACAG 57.293 33.333 0.00 0.00 43.29 3.51
2765 6157 9.924650 GTAACTTTATTGTCTAGAAAGGACAGA 57.075 33.333 0.00 0.00 43.29 3.41
2767 6159 8.196378 ACTTTATTGTCTAGAAAGGACAGAGT 57.804 34.615 0.00 0.00 43.29 3.24
2768 6160 8.652290 ACTTTATTGTCTAGAAAGGACAGAGTT 58.348 33.333 0.00 0.00 43.29 3.01
2769 6161 9.145865 CTTTATTGTCTAGAAAGGACAGAGTTC 57.854 37.037 0.00 0.00 43.29 3.01
2770 6162 6.672266 ATTGTCTAGAAAGGACAGAGTTCA 57.328 37.500 0.00 0.00 43.29 3.18
2771 6163 6.672266 TTGTCTAGAAAGGACAGAGTTCAT 57.328 37.500 0.00 0.00 43.29 2.57
2772 6164 7.776618 TTGTCTAGAAAGGACAGAGTTCATA 57.223 36.000 0.00 0.00 43.29 2.15
2773 6165 7.397892 TGTCTAGAAAGGACAGAGTTCATAG 57.602 40.000 0.00 0.00 38.57 2.23
2774 6166 6.127591 TGTCTAGAAAGGACAGAGTTCATAGC 60.128 42.308 0.00 0.00 38.57 2.97
2775 6167 5.952347 TCTAGAAAGGACAGAGTTCATAGCA 59.048 40.000 0.00 0.00 0.00 3.49
2776 6168 4.826556 AGAAAGGACAGAGTTCATAGCAC 58.173 43.478 0.00 0.00 0.00 4.40
2777 6169 4.284490 AGAAAGGACAGAGTTCATAGCACA 59.716 41.667 0.00 0.00 0.00 4.57
2778 6170 4.623932 AAGGACAGAGTTCATAGCACAA 57.376 40.909 0.00 0.00 0.00 3.33
2779 6171 4.833478 AGGACAGAGTTCATAGCACAAT 57.167 40.909 0.00 0.00 0.00 2.71
2780 6172 4.764172 AGGACAGAGTTCATAGCACAATC 58.236 43.478 0.00 0.00 0.00 2.67
2781 6173 4.469227 AGGACAGAGTTCATAGCACAATCT 59.531 41.667 0.00 0.00 0.00 2.40
2782 6174 5.658634 AGGACAGAGTTCATAGCACAATCTA 59.341 40.000 0.00 0.00 0.00 1.98
2783 6175 6.155221 AGGACAGAGTTCATAGCACAATCTAA 59.845 38.462 0.00 0.00 0.00 2.10
2784 6176 6.989169 GGACAGAGTTCATAGCACAATCTAAT 59.011 38.462 0.00 0.00 0.00 1.73
2785 6177 7.497249 GGACAGAGTTCATAGCACAATCTAATT 59.503 37.037 0.00 0.00 0.00 1.40
2786 6178 9.534565 GACAGAGTTCATAGCACAATCTAATTA 57.465 33.333 0.00 0.00 0.00 1.40
2812 6204 6.457159 TTTTCTACTTGGTGGGAATAGGAA 57.543 37.500 0.00 0.00 0.00 3.36
2819 6211 2.092646 TGGTGGGAATAGGAACCGATTG 60.093 50.000 4.08 0.00 35.33 2.67
2826 6218 5.758784 GGGAATAGGAACCGATTGTTAGAAG 59.241 44.000 4.08 0.00 37.29 2.85
2827 6219 6.346896 GGAATAGGAACCGATTGTTAGAAGT 58.653 40.000 4.08 0.00 37.29 3.01
2828 6220 6.258068 GGAATAGGAACCGATTGTTAGAAGTG 59.742 42.308 4.08 0.00 37.29 3.16
2830 6222 3.581332 AGGAACCGATTGTTAGAAGTGGA 59.419 43.478 0.00 0.00 37.29 4.02
2831 6223 4.225267 AGGAACCGATTGTTAGAAGTGGAT 59.775 41.667 0.00 0.00 37.29 3.41
2833 6225 6.099845 AGGAACCGATTGTTAGAAGTGGATAT 59.900 38.462 0.00 0.00 37.29 1.63
2836 6230 7.356089 ACCGATTGTTAGAAGTGGATATACA 57.644 36.000 0.00 0.00 0.00 2.29
2874 6268 4.096732 ACAACACAACTGCAGACTTTTC 57.903 40.909 23.35 0.00 0.00 2.29
2875 6269 3.758554 ACAACACAACTGCAGACTTTTCT 59.241 39.130 23.35 0.00 0.00 2.52
2876 6270 4.218417 ACAACACAACTGCAGACTTTTCTT 59.782 37.500 23.35 0.00 0.00 2.52
2877 6271 4.361451 ACACAACTGCAGACTTTTCTTG 57.639 40.909 23.35 14.70 0.00 3.02
2878 6272 3.758554 ACACAACTGCAGACTTTTCTTGT 59.241 39.130 23.35 15.38 0.00 3.16
2879 6273 4.941263 ACACAACTGCAGACTTTTCTTGTA 59.059 37.500 23.35 0.00 0.00 2.41
2880 6274 5.590259 ACACAACTGCAGACTTTTCTTGTAT 59.410 36.000 23.35 4.80 0.00 2.29
2881 6275 6.095440 ACACAACTGCAGACTTTTCTTGTATT 59.905 34.615 23.35 6.20 0.00 1.89
2882 6276 6.634436 CACAACTGCAGACTTTTCTTGTATTC 59.366 38.462 23.35 0.00 0.00 1.75
2883 6277 6.543831 ACAACTGCAGACTTTTCTTGTATTCT 59.456 34.615 23.35 0.00 0.00 2.40
2884 6278 7.067494 ACAACTGCAGACTTTTCTTGTATTCTT 59.933 33.333 23.35 0.00 0.00 2.52
2885 6279 7.573968 ACTGCAGACTTTTCTTGTATTCTTT 57.426 32.000 23.35 0.00 0.00 2.52
2886 6280 8.000780 ACTGCAGACTTTTCTTGTATTCTTTT 57.999 30.769 23.35 0.00 0.00 2.27
2887 6281 8.470002 ACTGCAGACTTTTCTTGTATTCTTTTT 58.530 29.630 23.35 0.00 0.00 1.94
2888 6282 8.633075 TGCAGACTTTTCTTGTATTCTTTTTG 57.367 30.769 0.00 0.00 0.00 2.44
2958 6352 5.314923 TGCTGAACCAAGATAATTGCTTC 57.685 39.130 0.00 0.00 0.00 3.86
2966 6360 9.374838 GAACCAAGATAATTGCTTCAATTTCAT 57.625 29.630 9.67 0.00 40.60 2.57
3006 6400 7.696453 GGTAACTGAAATCAATGGTATCAAACG 59.304 37.037 0.00 0.00 0.00 3.60
3024 6418 1.453928 GCCATAACCAGTGGAGGGC 60.454 63.158 18.40 13.83 39.12 5.19
3240 6645 6.850752 TCAAAATTTTGAGGGGATAAGTCC 57.149 37.500 26.01 0.00 41.88 3.85
3290 6695 2.048023 CAGCCATGGCCGTGACATT 61.048 57.895 33.14 9.27 43.17 2.71
3349 6759 4.171234 AGAGATAGAGGAGAGGAGAGGAG 58.829 52.174 0.00 0.00 0.00 3.69
3350 6760 4.140447 AGAGATAGAGGAGAGGAGAGGAGA 60.140 50.000 0.00 0.00 0.00 3.71
3351 6761 4.171234 AGATAGAGGAGAGGAGAGGAGAG 58.829 52.174 0.00 0.00 0.00 3.20
3352 6762 1.522900 AGAGGAGAGGAGAGGAGAGG 58.477 60.000 0.00 0.00 0.00 3.69
3353 6763 1.010793 AGAGGAGAGGAGAGGAGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
3771 7214 2.623416 TGTCATAGTACCAGCAGATCCG 59.377 50.000 0.00 0.00 0.00 4.18
3778 7221 2.816958 CAGCAGATCCGCAGCGTT 60.817 61.111 15.05 0.00 33.70 4.84
3809 7252 5.482908 ACCAGTTTTGCACATTGTTGTAAA 58.517 33.333 0.00 0.00 33.76 2.01
3810 7253 5.580297 ACCAGTTTTGCACATTGTTGTAAAG 59.420 36.000 0.00 0.00 33.38 1.85
3811 7254 5.006552 CCAGTTTTGCACATTGTTGTAAAGG 59.993 40.000 0.00 0.00 33.38 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.443681 CCAACACATCCCAAATACAGACC 59.556 47.826 0.00 0.00 0.00 3.85
2 3 4.202514 TGTCCAACACATCCCAAATACAGA 60.203 41.667 0.00 0.00 0.00 3.41
3 4 4.078537 TGTCCAACACATCCCAAATACAG 58.921 43.478 0.00 0.00 0.00 2.74
6 7 3.088532 GCTGTCCAACACATCCCAAATA 58.911 45.455 0.00 0.00 33.23 1.40
8 9 1.327303 GCTGTCCAACACATCCCAAA 58.673 50.000 0.00 0.00 33.23 3.28
13 14 4.819783 TGGGCTGTCCAACACATC 57.180 55.556 0.00 0.00 43.84 3.06
21 22 2.427095 GGTATGAACATTTGGGCTGTCC 59.573 50.000 0.00 0.00 0.00 4.02
22 23 2.097466 CGGTATGAACATTTGGGCTGTC 59.903 50.000 0.00 0.00 0.00 3.51
23 24 2.091541 CGGTATGAACATTTGGGCTGT 58.908 47.619 0.00 0.00 0.00 4.40
25 26 2.238646 TCTCGGTATGAACATTTGGGCT 59.761 45.455 0.00 0.00 0.00 5.19
26 27 2.614057 CTCTCGGTATGAACATTTGGGC 59.386 50.000 0.00 0.00 0.00 5.36
27 28 3.623060 CACTCTCGGTATGAACATTTGGG 59.377 47.826 0.00 0.00 0.00 4.12
28 29 4.503910 TCACTCTCGGTATGAACATTTGG 58.496 43.478 0.00 0.00 0.00 3.28
29 30 5.410924 TCTCACTCTCGGTATGAACATTTG 58.589 41.667 0.00 0.00 0.00 2.32
30 31 5.661056 TCTCACTCTCGGTATGAACATTT 57.339 39.130 0.00 0.00 0.00 2.32
31 32 5.661056 TTCTCACTCTCGGTATGAACATT 57.339 39.130 0.00 0.00 0.00 2.71
32 33 5.860941 ATTCTCACTCTCGGTATGAACAT 57.139 39.130 0.00 0.00 0.00 2.71
34 35 6.971602 TCATATTCTCACTCTCGGTATGAAC 58.028 40.000 0.00 0.00 0.00 3.18
37 38 7.825681 AGAATCATATTCTCACTCTCGGTATG 58.174 38.462 0.00 0.00 0.00 2.39
38 39 9.173021 CTAGAATCATATTCTCACTCTCGGTAT 57.827 37.037 5.46 0.00 0.00 2.73
39 40 8.158132 ACTAGAATCATATTCTCACTCTCGGTA 58.842 37.037 5.46 0.00 0.00 4.02
40 41 7.001674 ACTAGAATCATATTCTCACTCTCGGT 58.998 38.462 5.46 0.00 0.00 4.69
41 42 7.174080 TGACTAGAATCATATTCTCACTCTCGG 59.826 40.741 5.46 0.00 0.00 4.63
42 43 8.093659 TGACTAGAATCATATTCTCACTCTCG 57.906 38.462 5.46 0.00 0.00 4.04
45 46 7.039784 AGCCTGACTAGAATCATATTCTCACTC 60.040 40.741 5.46 1.30 0.00 3.51
46 47 6.782000 AGCCTGACTAGAATCATATTCTCACT 59.218 38.462 5.46 0.00 0.00 3.41
48 49 6.014755 CCAGCCTGACTAGAATCATATTCTCA 60.015 42.308 5.46 0.00 0.00 3.27
49 50 6.397272 CCAGCCTGACTAGAATCATATTCTC 58.603 44.000 5.46 0.00 0.00 2.87
50 51 5.279910 GCCAGCCTGACTAGAATCATATTCT 60.280 44.000 7.29 7.29 0.00 2.40
51 52 4.934602 GCCAGCCTGACTAGAATCATATTC 59.065 45.833 0.00 0.00 0.00 1.75
52 53 4.596643 AGCCAGCCTGACTAGAATCATATT 59.403 41.667 0.00 0.00 0.00 1.28
55 56 2.406559 AGCCAGCCTGACTAGAATCAT 58.593 47.619 0.00 0.00 0.00 2.45
57 58 3.801983 GCTTAGCCAGCCTGACTAGAATC 60.802 52.174 0.00 0.00 43.65 2.52
58 59 2.103941 GCTTAGCCAGCCTGACTAGAAT 59.896 50.000 0.00 0.00 43.65 2.40
59 60 1.482593 GCTTAGCCAGCCTGACTAGAA 59.517 52.381 0.00 0.00 43.65 2.10
61 62 3.677002 GCTTAGCCAGCCTGACTAG 57.323 57.895 0.00 0.00 43.65 2.57
76 77 2.887151 ATGTTTGAGGTGGCTAGCTT 57.113 45.000 15.72 0.00 34.13 3.74
97 98 5.243730 ACTTTAAGTTTGGCACTGCATGTAT 59.756 36.000 2.82 0.00 35.12 2.29
107 108 7.255001 GCTGTACTTTCTACTTTAAGTTTGGCA 60.255 37.037 1.94 0.00 36.16 4.92
353 426 9.553418 CATCGTGTATTACAAAAACATTCATCA 57.447 29.630 0.00 0.00 0.00 3.07
472 609 2.224523 ACACGAAGATTCATGTGGGTGT 60.225 45.455 0.00 0.00 31.73 4.16
473 610 2.426522 ACACGAAGATTCATGTGGGTG 58.573 47.619 0.00 0.00 31.73 4.61
475 612 4.503910 TCTTACACGAAGATTCATGTGGG 58.496 43.478 4.65 0.00 39.36 4.61
487 624 7.720074 AGTCCTATATCACTGATCTTACACGAA 59.280 37.037 0.00 0.00 0.00 3.85
488 625 7.225011 AGTCCTATATCACTGATCTTACACGA 58.775 38.462 0.00 0.00 0.00 4.35
489 626 7.441890 AGTCCTATATCACTGATCTTACACG 57.558 40.000 0.00 0.00 0.00 4.49
508 645 9.014297 GCCATAAGTATTGCATATTTAAGTCCT 57.986 33.333 0.00 0.00 0.00 3.85
509 646 8.792633 TGCCATAAGTATTGCATATTTAAGTCC 58.207 33.333 0.00 0.00 30.49 3.85
519 656 9.557061 CATCTAGATATGCCATAAGTATTGCAT 57.443 33.333 4.54 12.82 44.28 3.96
520 657 8.542926 ACATCTAGATATGCCATAAGTATTGCA 58.457 33.333 4.54 0.09 38.48 4.08
528 665 9.219603 GCTAAAACACATCTAGATATGCCATAA 57.780 33.333 10.98 0.00 0.00 1.90
529 666 8.374743 TGCTAAAACACATCTAGATATGCCATA 58.625 33.333 10.98 1.31 0.00 2.74
531 668 6.591001 TGCTAAAACACATCTAGATATGCCA 58.409 36.000 10.98 0.00 0.00 4.92
532 669 7.496529 TTGCTAAAACACATCTAGATATGCC 57.503 36.000 10.98 0.00 0.00 4.40
551 688 8.572185 TGAGCATTATGTAAAACAGTTTTGCTA 58.428 29.630 22.63 12.57 35.56 3.49
553 690 7.636259 TGAGCATTATGTAAAACAGTTTTGC 57.364 32.000 19.77 18.53 36.05 3.68
655 812 8.391859 GTCGGTTTTCAATTATTTTGTTTTGGT 58.608 29.630 0.00 0.00 0.00 3.67
667 824 8.703604 TTCATTGTTTTGTCGGTTTTCAATTA 57.296 26.923 0.00 0.00 0.00 1.40
670 827 7.421530 TTTTCATTGTTTTGTCGGTTTTCAA 57.578 28.000 0.00 0.00 0.00 2.69
678 836 6.639671 TTCCAGTTTTTCATTGTTTTGTCG 57.360 33.333 0.00 0.00 0.00 4.35
734 896 0.037790 TTTGCTGGTTTATTGCGGCC 60.038 50.000 0.00 0.00 0.00 6.13
735 897 1.067693 GTTTGCTGGTTTATTGCGGC 58.932 50.000 0.00 0.00 0.00 6.53
742 905 3.114668 TCGCTACTGTTTGCTGGTTTA 57.885 42.857 0.00 0.00 0.00 2.01
750 913 4.749245 AGATTTGGTTCGCTACTGTTTG 57.251 40.909 0.00 0.00 0.00 2.93
757 921 5.547465 CCCATGTATAGATTTGGTTCGCTA 58.453 41.667 0.00 0.00 0.00 4.26
829 995 2.771943 AGATCCTATTTGACGCCCAGAA 59.228 45.455 0.00 0.00 0.00 3.02
831 997 2.487934 CAGATCCTATTTGACGCCCAG 58.512 52.381 0.00 0.00 0.00 4.45
832 998 1.475034 GCAGATCCTATTTGACGCCCA 60.475 52.381 0.00 0.00 0.00 5.36
854 1020 3.319198 GCGAGACCCCTCCAACCA 61.319 66.667 0.00 0.00 36.04 3.67
855 1021 3.003763 AGCGAGACCCCTCCAACC 61.004 66.667 0.00 0.00 36.04 3.77
856 1022 1.255667 TACAGCGAGACCCCTCCAAC 61.256 60.000 0.00 0.00 36.04 3.77
858 1024 1.379977 CTACAGCGAGACCCCTCCA 60.380 63.158 0.00 0.00 36.04 3.86
860 1026 1.380112 ACCTACAGCGAGACCCCTC 60.380 63.158 0.00 0.00 36.08 4.30
861 1027 1.682684 CACCTACAGCGAGACCCCT 60.683 63.158 0.00 0.00 0.00 4.79
862 1028 2.893398 CACCTACAGCGAGACCCC 59.107 66.667 0.00 0.00 0.00 4.95
864 1030 2.184579 GGCACCTACAGCGAGACC 59.815 66.667 0.00 0.00 0.00 3.85
877 1043 2.677875 CTTGGAGGCTTGGGGCAC 60.678 66.667 0.00 0.00 44.01 5.01
878 1044 2.858476 TCTTGGAGGCTTGGGGCA 60.858 61.111 0.00 0.00 44.01 5.36
879 1045 1.562672 TAGTCTTGGAGGCTTGGGGC 61.563 60.000 0.00 0.00 40.90 5.80
880 1046 0.991920 TTAGTCTTGGAGGCTTGGGG 59.008 55.000 0.00 0.00 29.80 4.96
881 1047 1.680249 GCTTAGTCTTGGAGGCTTGGG 60.680 57.143 0.00 0.00 29.80 4.12
882 1048 1.280421 AGCTTAGTCTTGGAGGCTTGG 59.720 52.381 0.00 0.00 29.80 3.61
883 1049 2.354259 CAGCTTAGTCTTGGAGGCTTG 58.646 52.381 0.00 0.00 29.80 4.01
886 1052 0.746204 GCCAGCTTAGTCTTGGAGGC 60.746 60.000 4.28 0.00 0.00 4.70
888 1054 0.615331 TGGCCAGCTTAGTCTTGGAG 59.385 55.000 0.00 0.00 0.00 3.86
889 1055 1.064003 TTGGCCAGCTTAGTCTTGGA 58.936 50.000 5.11 0.00 0.00 3.53
890 1056 1.541588 GTTTGGCCAGCTTAGTCTTGG 59.458 52.381 5.11 0.00 0.00 3.61
891 1057 1.197721 CGTTTGGCCAGCTTAGTCTTG 59.802 52.381 5.11 0.00 0.00 3.02
892 1058 1.523758 CGTTTGGCCAGCTTAGTCTT 58.476 50.000 5.11 0.00 0.00 3.01
894 1060 1.305930 CCCGTTTGGCCAGCTTAGTC 61.306 60.000 5.11 0.00 0.00 2.59
925 1091 3.399105 TATGCTTGCGGGCCGACAT 62.399 57.895 33.44 26.05 0.00 3.06
926 1092 4.089239 TATGCTTGCGGGCCGACA 62.089 61.111 33.44 24.00 0.00 4.35
927 1093 3.573491 GTATGCTTGCGGGCCGAC 61.573 66.667 33.44 21.47 0.00 4.79
929 1095 3.272334 GAGTATGCTTGCGGGCCG 61.272 66.667 24.35 24.35 0.00 6.13
930 1096 1.889573 GAGAGTATGCTTGCGGGCC 60.890 63.158 0.00 0.00 0.00 5.80
931 1097 0.744414 TTGAGAGTATGCTTGCGGGC 60.744 55.000 0.00 0.00 0.00 6.13
932 1098 1.737838 TTTGAGAGTATGCTTGCGGG 58.262 50.000 0.00 0.00 0.00 6.13
934 1100 4.093514 CACAATTTGAGAGTATGCTTGCG 58.906 43.478 2.79 0.00 0.00 4.85
935 1101 3.855950 GCACAATTTGAGAGTATGCTTGC 59.144 43.478 2.79 0.00 0.00 4.01
937 1103 4.397417 GGAGCACAATTTGAGAGTATGCTT 59.603 41.667 10.21 0.00 41.78 3.91
938 1104 3.944015 GGAGCACAATTTGAGAGTATGCT 59.056 43.478 9.02 9.02 44.27 3.79
939 1105 3.944015 AGGAGCACAATTTGAGAGTATGC 59.056 43.478 2.79 1.46 0.00 3.14
940 1106 5.426504 AGAGGAGCACAATTTGAGAGTATG 58.573 41.667 2.79 0.00 0.00 2.39
941 1107 5.188555 TGAGAGGAGCACAATTTGAGAGTAT 59.811 40.000 2.79 0.00 0.00 2.12
942 1108 4.528206 TGAGAGGAGCACAATTTGAGAGTA 59.472 41.667 2.79 0.00 0.00 2.59
943 1109 3.326006 TGAGAGGAGCACAATTTGAGAGT 59.674 43.478 2.79 0.00 0.00 3.24
944 1110 3.935315 TGAGAGGAGCACAATTTGAGAG 58.065 45.455 2.79 0.00 0.00 3.20
946 1112 5.640189 ATTTGAGAGGAGCACAATTTGAG 57.360 39.130 2.79 0.00 0.00 3.02
947 1113 5.771666 AGAATTTGAGAGGAGCACAATTTGA 59.228 36.000 2.79 0.00 0.00 2.69
948 1114 6.022163 AGAATTTGAGAGGAGCACAATTTG 57.978 37.500 0.00 0.00 0.00 2.32
951 1117 4.914983 TGAGAATTTGAGAGGAGCACAAT 58.085 39.130 0.00 0.00 0.00 2.71
953 1119 4.356405 TTGAGAATTTGAGAGGAGCACA 57.644 40.909 0.00 0.00 0.00 4.57
954 1120 4.335037 GGATTGAGAATTTGAGAGGAGCAC 59.665 45.833 0.00 0.00 0.00 4.40
955 1121 4.521146 GGATTGAGAATTTGAGAGGAGCA 58.479 43.478 0.00 0.00 0.00 4.26
956 1122 3.882288 GGGATTGAGAATTTGAGAGGAGC 59.118 47.826 0.00 0.00 0.00 4.70
964 1130 4.527816 TCTGGTTTGGGGATTGAGAATTTG 59.472 41.667 0.00 0.00 0.00 2.32
969 1135 2.092968 CGATCTGGTTTGGGGATTGAGA 60.093 50.000 0.00 0.00 0.00 3.27
994 2994 1.007238 TCTCTTCCCTTCCATCTCCGT 59.993 52.381 0.00 0.00 0.00 4.69
1295 3314 4.054671 CAAGGAATCCAGATCGAAGCTAC 58.945 47.826 0.61 0.00 0.00 3.58
1387 3421 1.602323 TTGGGTTCATGGTGCGGTC 60.602 57.895 0.00 0.00 0.00 4.79
1466 3506 1.470805 CGTCGTGATGGATGCTGGTAA 60.471 52.381 0.00 0.00 0.00 2.85
1485 3525 1.209128 GATCGTGGTATGTGAAGCCG 58.791 55.000 0.00 0.00 0.00 5.52
1567 3607 2.301577 ACCGTCTGCTGCTCTTTATC 57.698 50.000 0.00 0.00 0.00 1.75
1584 3624 0.515564 GTGCGTACACATCCACAACC 59.484 55.000 0.00 0.00 46.61 3.77
1635 3678 7.497249 CCAATTCTAGGGATTTCAGTTACAGAG 59.503 40.741 0.00 0.00 0.00 3.35
1668 3711 4.761739 TCACCAATCAAAGTAGAAGGCAAG 59.238 41.667 0.00 0.00 0.00 4.01
1688 3731 9.988350 CCACATTGTAGATTTTATTAGTGTCAC 57.012 33.333 0.00 0.00 0.00 3.67
1692 3735 8.225603 AGGCCACATTGTAGATTTTATTAGTG 57.774 34.615 5.01 0.00 0.00 2.74
1693 3736 8.823220 AAGGCCACATTGTAGATTTTATTAGT 57.177 30.769 5.01 0.00 0.00 2.24
1694 3737 9.520204 CAAAGGCCACATTGTAGATTTTATTAG 57.480 33.333 5.01 0.00 0.00 1.73
1696 3739 7.818930 CACAAAGGCCACATTGTAGATTTTATT 59.181 33.333 17.77 0.00 37.66 1.40
1698 3741 6.491745 TCACAAAGGCCACATTGTAGATTTTA 59.508 34.615 17.77 0.87 37.66 1.52
1711 3754 1.476488 ACTGTTGTTCACAAAGGCCAC 59.524 47.619 5.01 0.00 37.63 5.01
1723 3766 6.942576 AGCAGGATCAACTTATAACTGTTGTT 59.057 34.615 14.04 8.41 42.71 2.83
1724 3767 6.476378 AGCAGGATCAACTTATAACTGTTGT 58.524 36.000 14.04 0.00 42.71 3.32
1725 3768 6.992063 AGCAGGATCAACTTATAACTGTTG 57.008 37.500 2.69 10.04 43.28 3.33
1752 3802 1.197721 GACAAAGATGCGGACACAAGG 59.802 52.381 0.00 0.00 0.00 3.61
1762 3812 6.803807 GGAAAGTTCACTAATGACAAAGATGC 59.196 38.462 0.00 0.00 33.38 3.91
1920 3979 2.979813 CAAACAAATGGTACGCTCAAGC 59.020 45.455 0.00 0.00 37.78 4.01
2005 4064 0.034574 ACCGCATGCATCCTGGTAAA 60.035 50.000 19.57 0.00 0.00 2.01
2008 4067 2.048023 CAACCGCATGCATCCTGGT 61.048 57.895 19.57 13.44 33.45 4.00
2012 4071 3.530260 CCCCAACCGCATGCATCC 61.530 66.667 19.57 0.00 0.00 3.51
2014 4073 3.069946 CACCCCAACCGCATGCAT 61.070 61.111 19.57 1.32 0.00 3.96
2031 4090 3.735746 CCAAGAAAACAAACTCGGCATTC 59.264 43.478 0.00 0.00 0.00 2.67
2035 4094 2.616842 TCTCCAAGAAAACAAACTCGGC 59.383 45.455 0.00 0.00 0.00 5.54
2037 4096 4.515191 TCCATCTCCAAGAAAACAAACTCG 59.485 41.667 0.00 0.00 0.00 4.18
2104 4163 2.416547 CTGGCGTCATCTTGTAAACCTG 59.583 50.000 0.00 0.00 0.00 4.00
2133 4192 9.865321 ATGAAAGGAATGACACTATTCAAAATG 57.135 29.630 0.00 0.00 38.51 2.32
2140 4199 7.121382 ACCATCATGAAAGGAATGACACTATT 58.879 34.615 20.76 0.00 36.89 1.73
2200 4259 5.256474 ACAGGGTAATTCTGTTGGATCTTG 58.744 41.667 0.00 0.00 42.17 3.02
2202 4261 5.395324 CGTACAGGGTAATTCTGTTGGATCT 60.395 44.000 3.85 0.00 42.17 2.75
2216 4278 0.609662 GAGGCAAACCGTACAGGGTA 59.390 55.000 8.31 0.00 40.76 3.69
2236 4300 6.879276 TGACGGTACTAGGAAGATTGATAG 57.121 41.667 0.00 0.00 0.00 2.08
2246 4310 6.131264 TGGAAAATAGATGACGGTACTAGGA 58.869 40.000 0.00 0.00 0.00 2.94
2259 4323 8.582437 CAGCATAATGGACATTGGAAAATAGAT 58.418 33.333 7.76 0.00 32.50 1.98
2278 4342 8.506437 CGCAAAGGAGATAAAATATCAGCATAA 58.494 33.333 0.67 0.00 0.00 1.90
2303 4369 6.441274 AGGCATATGCACAAGATAAAAATCG 58.559 36.000 28.07 0.00 44.36 3.34
2314 5705 4.535781 ACCAGAATTAGGCATATGCACAA 58.464 39.130 28.07 20.22 44.36 3.33
2329 5720 6.899393 TGCATTAGAAACTTGAACCAGAAT 57.101 33.333 0.00 0.00 0.00 2.40
2332 5723 7.147312 TGATTTGCATTAGAAACTTGAACCAG 58.853 34.615 0.00 0.00 0.00 4.00
2335 5726 8.351495 TGTTGATTTGCATTAGAAACTTGAAC 57.649 30.769 0.00 0.00 0.00 3.18
2341 5732 9.410556 ACTTGTATGTTGATTTGCATTAGAAAC 57.589 29.630 0.00 0.00 0.00 2.78
2348 5739 7.975616 GGATTGTACTTGTATGTTGATTTGCAT 59.024 33.333 0.00 0.00 0.00 3.96
2363 5754 2.936498 CGCCACTAAGGGATTGTACTTG 59.064 50.000 0.00 0.00 38.09 3.16
2364 5755 2.835764 TCGCCACTAAGGGATTGTACTT 59.164 45.455 0.00 0.00 38.09 2.24
2367 5758 3.985019 TTTCGCCACTAAGGGATTGTA 57.015 42.857 0.00 0.00 38.09 2.41
2378 5769 1.174712 AGCAAGTGCATTTCGCCACT 61.175 50.000 6.00 0.00 45.16 4.00
2381 5772 1.501169 AAAAGCAAGTGCATTTCGCC 58.499 45.000 6.00 0.00 45.16 5.54
2401 5792 1.340088 TACCACACAAGGGAGCGTAA 58.660 50.000 0.00 0.00 0.00 3.18
2403 5794 0.690762 ATTACCACACAAGGGAGCGT 59.309 50.000 0.00 0.00 0.00 5.07
2404 5795 2.684001 TATTACCACACAAGGGAGCG 57.316 50.000 0.00 0.00 0.00 5.03
2405 5796 3.632145 CCATTATTACCACACAAGGGAGC 59.368 47.826 0.00 0.00 0.00 4.70
2406 5797 4.855340 ACCATTATTACCACACAAGGGAG 58.145 43.478 0.00 0.00 0.00 4.30
2408 5799 4.381505 GCAACCATTATTACCACACAAGGG 60.382 45.833 0.00 0.00 0.00 3.95
2411 5802 5.791336 TTGCAACCATTATTACCACACAA 57.209 34.783 0.00 0.00 0.00 3.33
2413 5804 5.719173 ACATTGCAACCATTATTACCACAC 58.281 37.500 0.00 0.00 0.00 3.82
2415 5806 8.032451 AGTTAACATTGCAACCATTATTACCAC 58.968 33.333 0.00 0.00 0.00 4.16
2485 5876 9.515020 GCACAATAGCAGCTAACAAAAATATAA 57.485 29.630 6.13 0.00 0.00 0.98
2486 5877 8.681806 TGCACAATAGCAGCTAACAAAAATATA 58.318 29.630 6.13 0.00 40.11 0.86
2554 5945 7.985752 GGTTGTAGCCAAGTGTTTATATAGAGT 59.014 37.037 0.00 0.00 0.00 3.24
2559 5950 5.198207 GGGGTTGTAGCCAAGTGTTTATAT 58.802 41.667 0.00 0.00 37.54 0.86
2566 5957 2.752903 GTTATGGGGTTGTAGCCAAGTG 59.247 50.000 0.00 0.00 37.54 3.16
2573 5964 4.222124 AGCTCAAGTTATGGGGTTGTAG 57.778 45.455 0.00 0.00 36.68 2.74
2611 6002 7.522725 GCTGAAGAATCAAGAATCCAACTCAAA 60.523 37.037 0.00 0.00 34.49 2.69
2612 6003 6.072286 GCTGAAGAATCAAGAATCCAACTCAA 60.072 38.462 0.00 0.00 34.49 3.02
2613 6004 5.413833 GCTGAAGAATCAAGAATCCAACTCA 59.586 40.000 0.00 0.00 34.49 3.41
2616 6007 5.048504 TGTGCTGAAGAATCAAGAATCCAAC 60.049 40.000 0.00 0.00 34.49 3.77
2619 6010 5.392811 CCTTGTGCTGAAGAATCAAGAATCC 60.393 44.000 0.00 0.00 38.06 3.01
2621 6012 5.048224 CACCTTGTGCTGAAGAATCAAGAAT 60.048 40.000 0.00 0.00 38.06 2.40
2650 6041 2.637165 ACCCTGAAACTTGAGGAGGAT 58.363 47.619 0.00 0.00 32.86 3.24
2654 6045 3.662759 AACAACCCTGAAACTTGAGGA 57.337 42.857 0.00 0.00 32.86 3.71
2698 6090 1.761449 TCAAAGACAACAGCTGGCAA 58.239 45.000 19.93 0.00 34.24 4.52
2704 6096 8.389603 TCAAATTTTCAAATCAAAGACAACAGC 58.610 29.630 0.00 0.00 0.00 4.40
2717 6109 9.934190 GTTACACAAGCATTCAAATTTTCAAAT 57.066 25.926 0.00 0.00 0.00 2.32
2718 6110 9.160496 AGTTACACAAGCATTCAAATTTTCAAA 57.840 25.926 0.00 0.00 0.00 2.69
2719 6111 8.715191 AGTTACACAAGCATTCAAATTTTCAA 57.285 26.923 0.00 0.00 0.00 2.69
2720 6112 8.715191 AAGTTACACAAGCATTCAAATTTTCA 57.285 26.923 0.00 0.00 0.00 2.69
2733 6125 9.813080 CTTTCTAGACAATAAAGTTACACAAGC 57.187 33.333 0.00 0.00 0.00 4.01
2736 6128 9.485206 GTCCTTTCTAGACAATAAAGTTACACA 57.515 33.333 0.00 0.00 34.27 3.72
2737 6129 9.485206 TGTCCTTTCTAGACAATAAAGTTACAC 57.515 33.333 0.00 0.00 41.17 2.90
2742 6134 8.196378 ACTCTGTCCTTTCTAGACAATAAAGT 57.804 34.615 0.00 0.00 43.36 2.66
2745 6137 8.190326 TGAACTCTGTCCTTTCTAGACAATAA 57.810 34.615 0.00 0.00 43.36 1.40
2752 6144 6.039616 GTGCTATGAACTCTGTCCTTTCTAG 58.960 44.000 0.00 0.00 0.00 2.43
2754 6146 4.284490 TGTGCTATGAACTCTGTCCTTTCT 59.716 41.667 0.00 0.00 0.00 2.52
2755 6147 4.569943 TGTGCTATGAACTCTGTCCTTTC 58.430 43.478 0.00 0.00 0.00 2.62
2756 6148 4.623932 TGTGCTATGAACTCTGTCCTTT 57.376 40.909 0.00 0.00 0.00 3.11
2757 6149 4.623932 TTGTGCTATGAACTCTGTCCTT 57.376 40.909 0.00 0.00 0.00 3.36
2758 6150 4.469227 AGATTGTGCTATGAACTCTGTCCT 59.531 41.667 0.00 0.00 0.00 3.85
2759 6151 4.764172 AGATTGTGCTATGAACTCTGTCC 58.236 43.478 0.00 0.00 0.00 4.02
2760 6152 8.430801 AATTAGATTGTGCTATGAACTCTGTC 57.569 34.615 0.00 0.00 0.00 3.51
2793 6185 3.431766 CGGTTCCTATTCCCACCAAGTAG 60.432 52.174 0.00 0.00 0.00 2.57
2801 6193 4.717778 TCTAACAATCGGTTCCTATTCCCA 59.282 41.667 0.00 0.00 40.96 4.37
2810 6202 7.924412 TGTATATCCACTTCTAACAATCGGTTC 59.076 37.037 0.00 0.00 40.96 3.62
2812 6204 7.356089 TGTATATCCACTTCTAACAATCGGT 57.644 36.000 0.00 0.00 0.00 4.69
2833 6225 8.999431 GTGTTGTCTTCCTTTATCAGATTTGTA 58.001 33.333 0.00 0.00 0.00 2.41
2836 6230 8.352942 GTTGTGTTGTCTTCCTTTATCAGATTT 58.647 33.333 0.00 0.00 0.00 2.17
2845 6239 3.088532 TGCAGTTGTGTTGTCTTCCTTT 58.911 40.909 0.00 0.00 0.00 3.11
2847 6241 2.092968 TCTGCAGTTGTGTTGTCTTCCT 60.093 45.455 14.67 0.00 0.00 3.36
2848 6242 2.032178 GTCTGCAGTTGTGTTGTCTTCC 59.968 50.000 14.67 0.00 0.00 3.46
2874 6268 8.490355 GTGCCAGAATTTCAAAAAGAATACAAG 58.510 33.333 0.00 0.00 35.83 3.16
2875 6269 8.203485 AGTGCCAGAATTTCAAAAAGAATACAA 58.797 29.630 0.00 0.00 35.83 2.41
2876 6270 7.725251 AGTGCCAGAATTTCAAAAAGAATACA 58.275 30.769 0.00 0.00 35.83 2.29
2877 6271 7.329471 GGAGTGCCAGAATTTCAAAAAGAATAC 59.671 37.037 0.00 0.00 35.83 1.89
2878 6272 7.378181 GGAGTGCCAGAATTTCAAAAAGAATA 58.622 34.615 0.00 0.00 35.83 1.75
2879 6273 6.226052 GGAGTGCCAGAATTTCAAAAAGAAT 58.774 36.000 0.00 0.00 35.83 2.40
2880 6274 5.453198 GGGAGTGCCAGAATTTCAAAAAGAA 60.453 40.000 0.00 0.00 35.15 2.52
2881 6275 4.039124 GGGAGTGCCAGAATTTCAAAAAGA 59.961 41.667 0.00 0.00 35.15 2.52
2882 6276 4.202243 TGGGAGTGCCAGAATTTCAAAAAG 60.202 41.667 0.00 0.00 35.15 2.27
2883 6277 3.708631 TGGGAGTGCCAGAATTTCAAAAA 59.291 39.130 0.00 0.00 35.15 1.94
2884 6278 3.303938 TGGGAGTGCCAGAATTTCAAAA 58.696 40.909 0.00 0.00 35.15 2.44
2885 6279 2.956132 TGGGAGTGCCAGAATTTCAAA 58.044 42.857 0.00 0.00 35.15 2.69
2886 6280 2.673775 TGGGAGTGCCAGAATTTCAA 57.326 45.000 0.00 0.00 35.15 2.69
2887 6281 2.158475 ACTTGGGAGTGCCAGAATTTCA 60.158 45.455 2.68 0.00 33.99 2.69
2888 6282 2.519013 ACTTGGGAGTGCCAGAATTTC 58.481 47.619 2.68 0.00 33.99 2.17
3006 6400 1.453928 GCCCTCCACTGGTTATGGC 60.454 63.158 0.00 0.08 37.13 4.40
3048 6442 2.168521 CGTAATCAGTGGACAGACCCAT 59.831 50.000 0.00 0.00 38.66 4.00
3049 6443 1.548719 CGTAATCAGTGGACAGACCCA 59.451 52.381 0.00 0.00 38.00 4.51
3050 6444 1.822990 TCGTAATCAGTGGACAGACCC 59.177 52.381 0.00 0.00 38.00 4.46
3051 6445 2.492484 ACTCGTAATCAGTGGACAGACC 59.508 50.000 0.00 0.00 39.54 3.85
3052 6446 3.728268 CGACTCGTAATCAGTGGACAGAC 60.728 52.174 0.00 0.00 0.00 3.51
3053 6447 2.418976 CGACTCGTAATCAGTGGACAGA 59.581 50.000 0.00 0.00 0.00 3.41
3054 6448 2.418976 TCGACTCGTAATCAGTGGACAG 59.581 50.000 0.00 0.00 0.00 3.51
3055 6449 2.418976 CTCGACTCGTAATCAGTGGACA 59.581 50.000 0.00 0.00 0.00 4.02
3056 6450 2.223294 CCTCGACTCGTAATCAGTGGAC 60.223 54.545 0.00 0.00 0.00 4.02
3349 6759 1.383803 ACCTCCATGCCTCCTCCTC 60.384 63.158 0.00 0.00 0.00 3.71
3350 6760 1.692042 CACCTCCATGCCTCCTCCT 60.692 63.158 0.00 0.00 0.00 3.69
3351 6761 2.750657 CCACCTCCATGCCTCCTCC 61.751 68.421 0.00 0.00 0.00 4.30
3352 6762 1.977293 GACCACCTCCATGCCTCCTC 61.977 65.000 0.00 0.00 0.00 3.71
3353 6763 1.997874 GACCACCTCCATGCCTCCT 60.998 63.158 0.00 0.00 0.00 3.69
3562 6986 2.271944 ACCAGAAGTGTTAGGCAACC 57.728 50.000 0.00 0.00 33.41 3.77
3734 7177 1.764134 TGACAGACCCAAGGTTTACGT 59.236 47.619 0.00 0.00 35.25 3.57
3771 7214 1.134788 ACTGGTAGTATGGAACGCTGC 60.135 52.381 0.00 0.00 0.00 5.25
3778 7221 4.359434 TGTGCAAAACTGGTAGTATGGA 57.641 40.909 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.