Multiple sequence alignment - TraesCS7D01G483900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G483900 chr7D 100.000 3718 0 0 1 3718 593685630 593681913 0.000000e+00 6866.0
1 TraesCS7D01G483900 chr7D 92.267 375 22 5 3345 3715 402316330 402316701 3.290000e-145 525.0
2 TraesCS7D01G483900 chr7B 90.253 2216 126 42 539 2739 667290912 667293052 0.000000e+00 2813.0
3 TraesCS7D01G483900 chr7B 88.300 547 54 8 1 544 667290253 667290792 0.000000e+00 647.0
4 TraesCS7D01G483900 chr7B 86.100 518 29 18 2733 3229 667293095 667293590 5.500000e-143 518.0
5 TraesCS7D01G483900 chr7B 83.942 137 21 1 481 617 667291002 667291137 3.010000e-26 130.0
6 TraesCS7D01G483900 chr7A 88.726 2253 153 55 477 2680 686246485 686244285 0.000000e+00 2660.0
7 TraesCS7D01G483900 chr7A 82.669 727 87 20 39 763 686246967 686246278 3.180000e-170 608.0
8 TraesCS7D01G483900 chr7A 92.857 266 11 5 2994 3256 686244232 686243972 2.710000e-101 379.0
9 TraesCS7D01G483900 chrUn 93.744 1023 47 13 1249 2260 412260475 412259459 0.000000e+00 1519.0
10 TraesCS7D01G483900 chrUn 92.008 976 61 13 1505 2471 330815984 330815017 0.000000e+00 1354.0
11 TraesCS7D01G483900 chrUn 93.382 680 42 3 1246 1924 443378067 443378744 0.000000e+00 1003.0
12 TraesCS7D01G483900 chrUn 84.360 211 26 6 2262 2471 359249454 359249250 2.260000e-47 200.0
13 TraesCS7D01G483900 chr5A 93.673 648 34 6 1246 1890 699761152 699761795 0.000000e+00 963.0
14 TraesCS7D01G483900 chr5A 90.283 566 38 13 1915 2471 699765539 699766096 0.000000e+00 725.0
15 TraesCS7D01G483900 chr5A 92.042 377 24 5 3345 3718 559696198 559696571 3.290000e-145 525.0
16 TraesCS7D01G483900 chr6A 93.386 635 35 6 1246 1877 451603554 451604184 0.000000e+00 933.0
17 TraesCS7D01G483900 chr6A 89.853 611 45 13 1870 2471 451604435 451605037 0.000000e+00 769.0
18 TraesCS7D01G483900 chr2B 93.128 422 26 3 1246 1666 748940685 748941104 1.900000e-172 616.0
19 TraesCS7D01G483900 chr2B 100.000 33 0 0 3327 3359 620198666 620198698 1.110000e-05 62.1
20 TraesCS7D01G483900 chr2D 91.371 394 28 4 3327 3718 552139587 552139198 5.470000e-148 534.0
21 TraesCS7D01G483900 chr2D 92.533 375 22 4 3345 3718 201456569 201456200 1.970000e-147 532.0
22 TraesCS7D01G483900 chr2D 91.799 378 24 5 3345 3718 429202924 429202550 1.530000e-143 520.0
23 TraesCS7D01G483900 chr3D 92.267 375 22 6 3345 3716 83699743 83700113 3.290000e-145 525.0
24 TraesCS7D01G483900 chr3D 100.000 29 0 0 565 593 582826975 582826947 2.000000e-03 54.7
25 TraesCS7D01G483900 chr1D 90.840 393 31 3 3328 3718 366248732 366248343 4.260000e-144 521.0
26 TraesCS7D01G483900 chr5D 90.306 392 35 2 3327 3718 510830846 510830458 9.210000e-141 510.0
27 TraesCS7D01G483900 chr2A 90.127 395 33 5 3327 3718 70652461 70652852 3.310000e-140 508.0
28 TraesCS7D01G483900 chr1A 100.000 31 0 0 3329 3359 344298257 344298227 1.440000e-04 58.4
29 TraesCS7D01G483900 chr4D 96.970 33 1 0 3327 3359 309494988 309495020 5.190000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G483900 chr7D 593681913 593685630 3717 True 6866.000000 6866 100.00000 1 3718 1 chr7D.!!$R1 3717
1 TraesCS7D01G483900 chr7B 667290253 667293590 3337 False 1027.000000 2813 87.14875 1 3229 4 chr7B.!!$F1 3228
2 TraesCS7D01G483900 chr7A 686243972 686246967 2995 True 1215.666667 2660 88.08400 39 3256 3 chr7A.!!$R1 3217
3 TraesCS7D01G483900 chrUn 412259459 412260475 1016 True 1519.000000 1519 93.74400 1249 2260 1 chrUn.!!$R3 1011
4 TraesCS7D01G483900 chrUn 330815017 330815984 967 True 1354.000000 1354 92.00800 1505 2471 1 chrUn.!!$R1 966
5 TraesCS7D01G483900 chrUn 443378067 443378744 677 False 1003.000000 1003 93.38200 1246 1924 1 chrUn.!!$F1 678
6 TraesCS7D01G483900 chr5A 699761152 699766096 4944 False 844.000000 963 91.97800 1246 2471 2 chr5A.!!$F2 1225
7 TraesCS7D01G483900 chr6A 451603554 451605037 1483 False 851.000000 933 91.61950 1246 2471 2 chr6A.!!$F1 1225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 909 0.036858 AAGCGTCCTCAAGAAGGCTC 60.037 55.0 0.0 0.0 45.78 4.70 F
1011 1175 0.106015 CCCCACAATCCTCCATTCCC 60.106 60.0 0.0 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2350 6512 0.108520 GATGACGGAGGCGTTGGTAA 60.109 55.0 0.0 0.0 0.0 2.85 R
2910 7152 0.036875 CCGTCCCCTGCTTTTTCTCT 59.963 55.0 0.0 0.0 0.0 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 5.533528 TCTTTTAGTTGAAGGGGTAAGTTGC 59.466 40.000 0.00 0.00 0.00 4.17
115 116 4.563976 GCAATCTTTGATTTGCAGCGTAAT 59.436 37.500 2.96 0.00 45.83 1.89
129 130 7.285783 TGCAGCGTAATTAAGTAGTAAACTG 57.714 36.000 0.35 0.00 38.88 3.16
148 150 2.165845 CTGTTCTTAGAGGGGGTGTACG 59.834 54.545 0.00 0.00 0.00 3.67
149 151 2.174360 GTTCTTAGAGGGGGTGTACGT 58.826 52.381 0.00 0.00 0.00 3.57
171 173 1.496429 AGCATGGCTAGGGTTTGCTAT 59.504 47.619 0.00 0.00 41.58 2.97
206 208 4.443457 CGTACCCATTCTCATCAATCCACT 60.443 45.833 0.00 0.00 0.00 4.00
208 210 4.939255 ACCCATTCTCATCAATCCACTTT 58.061 39.130 0.00 0.00 0.00 2.66
218 220 6.446318 TCATCAATCCACTTTTTACACTTGC 58.554 36.000 0.00 0.00 0.00 4.01
219 221 6.265196 TCATCAATCCACTTTTTACACTTGCT 59.735 34.615 0.00 0.00 0.00 3.91
285 288 5.927030 TGACGTTGATTAAGATGCAACTTC 58.073 37.500 13.02 0.00 39.66 3.01
297 300 3.232213 TGCAACTTCGATACTCACTCC 57.768 47.619 0.00 0.00 0.00 3.85
300 304 4.246458 GCAACTTCGATACTCACTCCTTT 58.754 43.478 0.00 0.00 0.00 3.11
304 308 7.621633 GCAACTTCGATACTCACTCCTTTTTAC 60.622 40.741 0.00 0.00 0.00 2.01
325 329 4.265073 ACATACAAGGCCACTTCATTCTC 58.735 43.478 5.01 0.00 33.81 2.87
400 404 9.961265 ATGTCACAAAAAGAATGCTATATGATG 57.039 29.630 0.00 0.00 0.00 3.07
495 500 4.686191 TGCCACAATTTCACAGGAAAAT 57.314 36.364 0.00 0.00 45.52 1.82
512 517 5.185828 AGGAAAATCAAAGTGGCCTTGTATC 59.814 40.000 3.32 0.00 0.00 2.24
513 518 5.185828 GGAAAATCAAAGTGGCCTTGTATCT 59.814 40.000 3.32 0.00 0.00 1.98
524 529 5.585047 GTGGCCTTGTATCTAGAAACGAAAT 59.415 40.000 3.32 0.00 0.00 2.17
529 534 6.238211 CCTTGTATCTAGAAACGAAATGCCAG 60.238 42.308 0.00 0.00 0.00 4.85
532 537 7.324935 TGTATCTAGAAACGAAATGCCAGTTA 58.675 34.615 0.00 0.00 0.00 2.24
546 675 5.957771 TGCCAGTTAGATAAACATCCTCT 57.042 39.130 0.00 0.00 40.83 3.69
550 679 7.510685 TGCCAGTTAGATAAACATCCTCTATCT 59.489 37.037 0.00 0.00 40.83 1.98
580 709 3.513515 TCACAAGAAAAACAAAGTGGCCT 59.486 39.130 3.32 0.00 0.00 5.19
585 714 5.869649 AGAAAAACAAAGTGGCCTTGTAT 57.130 34.783 9.10 0.04 0.00 2.29
586 715 6.969993 AGAAAAACAAAGTGGCCTTGTATA 57.030 33.333 9.10 0.00 0.00 1.47
594 723 4.634012 AGTGGCCTTGTATACAGAAACA 57.366 40.909 3.32 2.39 0.00 2.83
605 734 8.810652 TTGTATACAGAAACAAAAAGCCAATC 57.189 30.769 5.56 0.00 32.86 2.67
618 747 3.430042 AGCCAATCGGATAAGCATCAT 57.570 42.857 12.88 0.00 32.32 2.45
619 748 3.341823 AGCCAATCGGATAAGCATCATC 58.658 45.455 12.88 0.00 32.32 2.92
620 749 3.008813 AGCCAATCGGATAAGCATCATCT 59.991 43.478 12.88 0.00 32.32 2.90
621 750 3.755378 GCCAATCGGATAAGCATCATCTT 59.245 43.478 7.15 0.00 32.32 2.40
641 770 7.993183 TCATCTTTCTATCCCCTAATTTCACAC 59.007 37.037 0.00 0.00 0.00 3.82
643 772 5.943349 TTCTATCCCCTAATTTCACACGA 57.057 39.130 0.00 0.00 0.00 4.35
675 804 2.227865 GGCCTTGTATGCAGAACGAAAA 59.772 45.455 0.00 0.00 0.00 2.29
689 818 5.801947 CAGAACGAAAAGCCAATTGGATAAG 59.198 40.000 29.02 15.46 37.39 1.73
694 823 5.663456 GAAAAGCCAATTGGATAAGCATCA 58.337 37.500 29.02 0.00 37.39 3.07
697 826 4.737578 AGCCAATTGGATAAGCATCATCT 58.262 39.130 29.02 7.80 37.39 2.90
714 843 6.888632 GCATCATCTATCCCCTAATTTCACAT 59.111 38.462 0.00 0.00 0.00 3.21
730 859 4.734398 TCACATGAAAAACAAAGTGGCT 57.266 36.364 0.00 0.00 38.35 4.75
780 909 0.036858 AAGCGTCCTCAAGAAGGCTC 60.037 55.000 0.00 0.00 45.78 4.70
794 923 0.949105 AGGCTCTACGTGCGGTTTTG 60.949 55.000 0.00 0.00 0.00 2.44
803 932 2.909965 GCGGTTTTGGGTGCTCCA 60.910 61.111 7.20 0.85 45.43 3.86
857 986 0.460987 CAGATCTGAGCGTGGAACCC 60.461 60.000 18.34 0.00 0.00 4.11
919 1056 0.321122 GAAGCTCTGACACCACAGGG 60.321 60.000 0.00 0.00 40.91 4.45
925 1082 1.799258 CTGACACCACAGGGCAAAGC 61.799 60.000 0.00 0.00 37.90 3.51
1011 1175 0.106015 CCCCACAATCCTCCATTCCC 60.106 60.000 0.00 0.00 0.00 3.97
1013 1177 1.410648 CCCACAATCCTCCATTCCCAG 60.411 57.143 0.00 0.00 0.00 4.45
1014 1178 1.565759 CCACAATCCTCCATTCCCAGA 59.434 52.381 0.00 0.00 0.00 3.86
1015 1179 2.648059 CACAATCCTCCATTCCCAGAC 58.352 52.381 0.00 0.00 0.00 3.51
1016 1180 1.566231 ACAATCCTCCATTCCCAGACC 59.434 52.381 0.00 0.00 0.00 3.85
1019 1183 0.417437 TCCTCCATTCCCAGACCAGA 59.583 55.000 0.00 0.00 0.00 3.86
1021 1185 1.065126 CCTCCATTCCCAGACCAGAAC 60.065 57.143 0.00 0.00 0.00 3.01
1022 1186 0.991920 TCCATTCCCAGACCAGAACC 59.008 55.000 0.00 0.00 0.00 3.62
1023 1187 0.698238 CCATTCCCAGACCAGAACCA 59.302 55.000 0.00 0.00 0.00 3.67
1024 1188 1.340405 CCATTCCCAGACCAGAACCAG 60.340 57.143 0.00 0.00 0.00 4.00
1025 1189 1.630369 CATTCCCAGACCAGAACCAGA 59.370 52.381 0.00 0.00 0.00 3.86
1026 1190 1.352083 TTCCCAGACCAGAACCAGAG 58.648 55.000 0.00 0.00 0.00 3.35
1027 1191 1.194781 TCCCAGACCAGAACCAGAGC 61.195 60.000 0.00 0.00 0.00 4.09
1034 1198 1.018226 CCAGAACCAGAGCAAGCTCG 61.018 60.000 15.67 10.75 46.90 5.03
1040 1204 2.099431 CAGAGCAAGCTCGGAGCAC 61.099 63.158 29.88 18.85 45.56 4.40
1083 1247 0.798776 AGCAAAGTTCCATCGCGAAG 59.201 50.000 15.24 9.17 0.00 3.79
1377 1555 3.371063 GCGACCGTGTCCCTCTCA 61.371 66.667 0.00 0.00 0.00 3.27
1545 1723 1.884464 ACGCGGCGAGATCTACGTA 60.884 57.895 30.94 0.00 31.03 3.57
2098 6253 4.390556 AGCTGGAGGAGGTCGGCT 62.391 66.667 0.00 0.00 32.30 5.52
2171 6329 4.778415 CGTGTCCGCCGTCCAGAG 62.778 72.222 0.00 0.00 0.00 3.35
2238 6399 2.490685 GAGGAGTTCGTCGGGCTC 59.509 66.667 7.97 7.97 0.00 4.70
2273 6434 2.000164 AGGTCCTCTACGCCTGAGA 59.000 57.895 0.00 0.00 33.68 3.27
2276 6437 1.451567 TCCTCTACGCCTGAGACGG 60.452 63.158 0.00 0.00 33.68 4.79
2277 6438 1.451567 CCTCTACGCCTGAGACGGA 60.452 63.158 0.00 0.00 33.68 4.69
2278 6439 1.716826 CCTCTACGCCTGAGACGGAC 61.717 65.000 0.00 0.00 33.68 4.79
2350 6512 4.415150 CTGGGCCCGCATGTCAGT 62.415 66.667 19.37 0.00 0.00 3.41
2351 6513 3.925630 CTGGGCCCGCATGTCAGTT 62.926 63.158 19.37 0.00 0.00 3.16
2427 6596 3.962421 CGGTCGGGCGGCTACTAG 61.962 72.222 9.56 3.22 0.00 2.57
2534 6706 2.823829 CGAGCGTGCCCTTTATGCC 61.824 63.158 0.00 0.00 0.00 4.40
2555 6727 1.891616 CTGAGCAGAGCAGAGCAGA 59.108 57.895 0.00 0.00 35.39 4.26
2556 6728 0.179121 CTGAGCAGAGCAGAGCAGAG 60.179 60.000 0.00 0.00 35.39 3.35
2557 6729 1.519898 GAGCAGAGCAGAGCAGAGC 60.520 63.158 0.00 0.00 0.00 4.09
2558 6730 2.228389 GAGCAGAGCAGAGCAGAGCA 62.228 60.000 0.00 0.00 0.00 4.26
2683 6874 2.311701 CCGCTTGCGTTTCGTACCA 61.312 57.895 13.97 0.00 0.00 3.25
2684 6875 1.154727 CGCTTGCGTTTCGTACCAC 60.155 57.895 6.86 0.00 0.00 4.16
2685 6876 1.554042 CGCTTGCGTTTCGTACCACT 61.554 55.000 6.86 0.00 0.00 4.00
2686 6877 0.163146 GCTTGCGTTTCGTACCACTC 59.837 55.000 0.00 0.00 0.00 3.51
2687 6878 0.788391 CTTGCGTTTCGTACCACTCC 59.212 55.000 0.00 0.00 0.00 3.85
2688 6879 0.390124 TTGCGTTTCGTACCACTCCT 59.610 50.000 0.00 0.00 0.00 3.69
2689 6880 1.246649 TGCGTTTCGTACCACTCCTA 58.753 50.000 0.00 0.00 0.00 2.94
2690 6881 1.068333 TGCGTTTCGTACCACTCCTAC 60.068 52.381 0.00 0.00 0.00 3.18
2691 6882 1.200948 GCGTTTCGTACCACTCCTACT 59.799 52.381 0.00 0.00 0.00 2.57
2692 6883 2.420022 GCGTTTCGTACCACTCCTACTA 59.580 50.000 0.00 0.00 0.00 1.82
2693 6884 3.729163 GCGTTTCGTACCACTCCTACTAC 60.729 52.174 0.00 0.00 0.00 2.73
2697 6888 1.028130 GTACCACTCCTACTACCCGC 58.972 60.000 0.00 0.00 0.00 6.13
2704 6895 2.369532 ACTCCTACTACCCGCAACAAAA 59.630 45.455 0.00 0.00 0.00 2.44
2720 6911 0.104120 AAAACCGCTTTGGACTTGGC 59.896 50.000 0.00 0.00 42.00 4.52
2746 6986 1.887198 GGAGTGGAGTGAGAACGAAGA 59.113 52.381 0.00 0.00 0.00 2.87
2768 7008 2.635915 AGAAATACATATTCCCCGCCGA 59.364 45.455 0.00 0.00 0.00 5.54
2810 7050 1.168407 ATTTAGCAGGCGCGCATGAT 61.168 50.000 45.07 41.54 45.49 2.45
2838 7078 3.710106 ATCGATCGATCATGAGCCG 57.290 52.632 24.60 9.51 0.00 5.52
2839 7079 0.457509 ATCGATCGATCATGAGCCGC 60.458 55.000 24.60 0.00 0.00 6.53
2876 7116 3.959609 GCTAAGCAAAGCACGAAAATG 57.040 42.857 5.51 0.00 42.30 2.32
2877 7117 3.564511 GCTAAGCAAAGCACGAAAATGA 58.435 40.909 5.51 0.00 42.30 2.57
2878 7118 3.605486 GCTAAGCAAAGCACGAAAATGAG 59.395 43.478 5.51 0.00 42.30 2.90
2879 7119 3.715628 AAGCAAAGCACGAAAATGAGT 57.284 38.095 0.00 0.00 0.00 3.41
2880 7120 3.273919 AGCAAAGCACGAAAATGAGTC 57.726 42.857 0.00 0.00 0.00 3.36
2881 7121 1.971962 GCAAAGCACGAAAATGAGTCG 59.028 47.619 0.00 0.00 44.10 4.18
2882 7122 2.349438 GCAAAGCACGAAAATGAGTCGA 60.349 45.455 0.18 0.00 41.02 4.20
2910 7152 1.528076 ATTGTTGGTGCTGGTGCGA 60.528 52.632 0.00 0.00 43.34 5.10
2913 7155 2.031012 TTGGTGCTGGTGCGAGAG 59.969 61.111 0.00 0.00 43.34 3.20
2916 7158 1.301716 GGTGCTGGTGCGAGAGAAA 60.302 57.895 0.00 0.00 43.34 2.52
2917 7159 0.884704 GGTGCTGGTGCGAGAGAAAA 60.885 55.000 0.00 0.00 43.34 2.29
2920 7162 0.110010 GCTGGTGCGAGAGAAAAAGC 60.110 55.000 0.00 0.00 0.00 3.51
2921 7163 1.229428 CTGGTGCGAGAGAAAAAGCA 58.771 50.000 0.00 0.00 37.26 3.91
2927 7169 1.443802 CGAGAGAAAAAGCAGGGGAC 58.556 55.000 0.00 0.00 0.00 4.46
3007 7259 3.134792 GCCGTCCTCTCGCTCTCA 61.135 66.667 0.00 0.00 0.00 3.27
3009 7261 1.431440 CCGTCCTCTCGCTCTCAAG 59.569 63.158 0.00 0.00 0.00 3.02
3010 7262 1.309499 CCGTCCTCTCGCTCTCAAGT 61.309 60.000 0.00 0.00 0.00 3.16
3012 7264 1.459450 GTCCTCTCGCTCTCAAGTCT 58.541 55.000 0.00 0.00 0.00 3.24
3014 7266 1.003696 TCCTCTCGCTCTCAAGTCTCA 59.996 52.381 0.00 0.00 0.00 3.27
3023 7275 0.679505 CTCAAGTCTCAACCACGGGA 59.320 55.000 0.00 0.00 0.00 5.14
3024 7276 0.391597 TCAAGTCTCAACCACGGGAC 59.608 55.000 0.00 0.00 0.00 4.46
3045 7300 1.258676 GACGGATGGGTATCTCCTCC 58.741 60.000 0.00 0.00 36.25 4.30
3047 7302 1.203075 ACGGATGGGTATCTCCTCCTC 60.203 57.143 0.00 0.00 36.25 3.71
3049 7304 2.491825 CGGATGGGTATCTCCTCCTCTT 60.492 54.545 0.00 0.00 36.25 2.85
3050 7305 3.592865 GGATGGGTATCTCCTCCTCTTT 58.407 50.000 0.00 0.00 36.25 2.52
3055 7310 3.644265 GGGTATCTCCTCCTCTTTTCCTC 59.356 52.174 0.00 0.00 36.25 3.71
3056 7311 3.319689 GGTATCTCCTCCTCTTTTCCTCG 59.680 52.174 0.00 0.00 0.00 4.63
3057 7312 2.606751 TCTCCTCCTCTTTTCCTCGT 57.393 50.000 0.00 0.00 0.00 4.18
3256 7511 1.425831 CTAGCTCCTAGGGTCCTAGCA 59.574 57.143 18.72 3.24 43.35 3.49
3257 7512 0.105913 AGCTCCTAGGGTCCTAGCAC 60.106 60.000 18.72 9.02 43.35 4.40
3258 7513 0.397254 GCTCCTAGGGTCCTAGCACA 60.397 60.000 16.55 4.16 43.35 4.57
3259 7514 1.698506 CTCCTAGGGTCCTAGCACAG 58.301 60.000 16.55 9.13 43.35 3.66
3260 7515 1.215673 CTCCTAGGGTCCTAGCACAGA 59.784 57.143 16.55 8.84 43.35 3.41
3261 7516 1.860240 TCCTAGGGTCCTAGCACAGAT 59.140 52.381 16.55 0.00 43.35 2.90
3262 7517 3.061369 TCCTAGGGTCCTAGCACAGATA 58.939 50.000 16.55 0.00 43.35 1.98
3263 7518 3.074687 TCCTAGGGTCCTAGCACAGATAG 59.925 52.174 16.55 3.26 43.35 2.08
3264 7519 3.074687 CCTAGGGTCCTAGCACAGATAGA 59.925 52.174 16.55 0.00 43.35 1.98
3265 7520 2.952116 AGGGTCCTAGCACAGATAGAC 58.048 52.381 0.00 0.00 0.00 2.59
3266 7521 2.516277 AGGGTCCTAGCACAGATAGACT 59.484 50.000 0.00 0.00 0.00 3.24
3267 7522 3.052490 AGGGTCCTAGCACAGATAGACTT 60.052 47.826 0.00 0.00 0.00 3.01
3268 7523 3.707102 GGGTCCTAGCACAGATAGACTTT 59.293 47.826 0.00 0.00 0.00 2.66
3269 7524 4.162509 GGGTCCTAGCACAGATAGACTTTT 59.837 45.833 0.00 0.00 0.00 2.27
3270 7525 5.363005 GGGTCCTAGCACAGATAGACTTTTA 59.637 44.000 0.00 0.00 0.00 1.52
3271 7526 6.042208 GGGTCCTAGCACAGATAGACTTTTAT 59.958 42.308 0.00 0.00 0.00 1.40
3272 7527 7.419172 GGGTCCTAGCACAGATAGACTTTTATT 60.419 40.741 0.00 0.00 0.00 1.40
3273 7528 7.654116 GGTCCTAGCACAGATAGACTTTTATTC 59.346 40.741 0.00 0.00 0.00 1.75
3274 7529 7.654116 GTCCTAGCACAGATAGACTTTTATTCC 59.346 40.741 0.00 0.00 0.00 3.01
3275 7530 7.344612 TCCTAGCACAGATAGACTTTTATTCCA 59.655 37.037 0.00 0.00 0.00 3.53
3276 7531 7.439655 CCTAGCACAGATAGACTTTTATTCCAC 59.560 40.741 0.00 0.00 0.00 4.02
3277 7532 6.951971 AGCACAGATAGACTTTTATTCCACT 58.048 36.000 0.00 0.00 0.00 4.00
3278 7533 7.044798 AGCACAGATAGACTTTTATTCCACTC 58.955 38.462 0.00 0.00 0.00 3.51
3279 7534 6.258947 GCACAGATAGACTTTTATTCCACTCC 59.741 42.308 0.00 0.00 0.00 3.85
3280 7535 6.763610 CACAGATAGACTTTTATTCCACTCCC 59.236 42.308 0.00 0.00 0.00 4.30
3281 7536 6.126739 ACAGATAGACTTTTATTCCACTCCCC 60.127 42.308 0.00 0.00 0.00 4.81
3282 7537 6.100424 CAGATAGACTTTTATTCCACTCCCCT 59.900 42.308 0.00 0.00 0.00 4.79
3283 7538 6.678857 AGATAGACTTTTATTCCACTCCCCTT 59.321 38.462 0.00 0.00 0.00 3.95
3284 7539 4.923415 AGACTTTTATTCCACTCCCCTTG 58.077 43.478 0.00 0.00 0.00 3.61
3285 7540 4.354087 AGACTTTTATTCCACTCCCCTTGT 59.646 41.667 0.00 0.00 0.00 3.16
3286 7541 5.550403 AGACTTTTATTCCACTCCCCTTGTA 59.450 40.000 0.00 0.00 0.00 2.41
3287 7542 6.045106 AGACTTTTATTCCACTCCCCTTGTAA 59.955 38.462 0.00 0.00 0.00 2.41
3288 7543 6.616577 ACTTTTATTCCACTCCCCTTGTAAA 58.383 36.000 0.00 0.00 0.00 2.01
3289 7544 7.070629 ACTTTTATTCCACTCCCCTTGTAAAA 58.929 34.615 0.00 0.00 0.00 1.52
3290 7545 7.232737 ACTTTTATTCCACTCCCCTTGTAAAAG 59.767 37.037 10.85 10.85 40.76 2.27
3291 7546 4.741928 ATTCCACTCCCCTTGTAAAAGT 57.258 40.909 0.00 0.00 0.00 2.66
3292 7547 4.529716 TTCCACTCCCCTTGTAAAAGTT 57.470 40.909 0.00 0.00 0.00 2.66
3293 7548 4.529716 TCCACTCCCCTTGTAAAAGTTT 57.470 40.909 0.00 0.00 0.00 2.66
3294 7549 4.874199 TCCACTCCCCTTGTAAAAGTTTT 58.126 39.130 6.06 6.06 0.00 2.43
3295 7550 4.647399 TCCACTCCCCTTGTAAAAGTTTTG 59.353 41.667 11.18 0.00 0.00 2.44
3296 7551 4.202212 CCACTCCCCTTGTAAAAGTTTTGG 60.202 45.833 11.18 3.50 0.00 3.28
3297 7552 4.647399 CACTCCCCTTGTAAAAGTTTTGGA 59.353 41.667 11.18 6.85 0.00 3.53
3298 7553 4.893524 ACTCCCCTTGTAAAAGTTTTGGAG 59.106 41.667 20.52 20.52 41.99 3.86
3299 7554 3.639561 TCCCCTTGTAAAAGTTTTGGAGC 59.360 43.478 11.18 0.10 0.00 4.70
3300 7555 3.386402 CCCCTTGTAAAAGTTTTGGAGCA 59.614 43.478 11.18 2.54 0.00 4.26
3301 7556 4.040339 CCCCTTGTAAAAGTTTTGGAGCAT 59.960 41.667 11.18 0.00 0.00 3.79
3302 7557 5.454613 CCCCTTGTAAAAGTTTTGGAGCATT 60.455 40.000 11.18 0.00 0.00 3.56
3303 7558 6.054941 CCCTTGTAAAAGTTTTGGAGCATTT 58.945 36.000 11.18 0.00 0.00 2.32
3304 7559 6.542005 CCCTTGTAAAAGTTTTGGAGCATTTT 59.458 34.615 11.18 0.00 0.00 1.82
3305 7560 7.713073 CCCTTGTAAAAGTTTTGGAGCATTTTA 59.287 33.333 11.18 0.00 0.00 1.52
3306 7561 9.271828 CCTTGTAAAAGTTTTGGAGCATTTTAT 57.728 29.630 11.18 0.00 30.56 1.40
3329 7584 5.991328 TTCTTATAATGAGAGCAAAGCCG 57.009 39.130 0.00 0.00 0.00 5.52
3330 7585 5.276461 TCTTATAATGAGAGCAAAGCCGA 57.724 39.130 0.00 0.00 0.00 5.54
3331 7586 5.050490 TCTTATAATGAGAGCAAAGCCGAC 58.950 41.667 0.00 0.00 0.00 4.79
3332 7587 2.024176 TAATGAGAGCAAAGCCGACC 57.976 50.000 0.00 0.00 0.00 4.79
3333 7588 0.678048 AATGAGAGCAAAGCCGACCC 60.678 55.000 0.00 0.00 0.00 4.46
3334 7589 1.841302 ATGAGAGCAAAGCCGACCCA 61.841 55.000 0.00 0.00 0.00 4.51
3335 7590 1.302511 GAGAGCAAAGCCGACCCAA 60.303 57.895 0.00 0.00 0.00 4.12
3336 7591 0.889186 GAGAGCAAAGCCGACCCAAA 60.889 55.000 0.00 0.00 0.00 3.28
3337 7592 1.172812 AGAGCAAAGCCGACCCAAAC 61.173 55.000 0.00 0.00 0.00 2.93
3338 7593 2.050442 GCAAAGCCGACCCAAACG 60.050 61.111 0.00 0.00 0.00 3.60
3349 7604 3.656045 CCAAACGGACGGCGCTTT 61.656 61.111 6.90 0.00 0.00 3.51
3350 7605 2.330041 CAAACGGACGGCGCTTTT 59.670 55.556 6.90 0.00 0.00 2.27
3351 7606 2.008697 CAAACGGACGGCGCTTTTG 61.009 57.895 6.90 7.73 0.00 2.44
3352 7607 2.474612 AAACGGACGGCGCTTTTGT 61.475 52.632 6.90 0.34 0.00 2.83
3353 7608 2.383027 AAACGGACGGCGCTTTTGTC 62.383 55.000 6.90 10.54 0.00 3.18
3354 7609 3.041940 CGGACGGCGCTTTTGTCT 61.042 61.111 6.90 0.00 33.21 3.41
3355 7610 2.556287 GGACGGCGCTTTTGTCTG 59.444 61.111 6.90 0.00 33.21 3.51
3356 7611 2.251642 GGACGGCGCTTTTGTCTGT 61.252 57.895 6.90 0.00 33.21 3.41
3357 7612 1.647084 GACGGCGCTTTTGTCTGTT 59.353 52.632 6.90 0.00 0.00 3.16
3358 7613 0.028902 GACGGCGCTTTTGTCTGTTT 59.971 50.000 6.90 0.00 0.00 2.83
3359 7614 0.248458 ACGGCGCTTTTGTCTGTTTG 60.248 50.000 6.90 0.00 0.00 2.93
3360 7615 0.934436 CGGCGCTTTTGTCTGTTTGG 60.934 55.000 7.64 0.00 0.00 3.28
3361 7616 0.383949 GGCGCTTTTGTCTGTTTGGA 59.616 50.000 7.64 0.00 0.00 3.53
3362 7617 1.000274 GGCGCTTTTGTCTGTTTGGAT 60.000 47.619 7.64 0.00 0.00 3.41
3363 7618 2.319472 GCGCTTTTGTCTGTTTGGATC 58.681 47.619 0.00 0.00 0.00 3.36
3364 7619 2.574322 CGCTTTTGTCTGTTTGGATCG 58.426 47.619 0.00 0.00 0.00 3.69
3365 7620 2.665519 CGCTTTTGTCTGTTTGGATCGG 60.666 50.000 0.00 0.00 0.00 4.18
3366 7621 2.922335 GCTTTTGTCTGTTTGGATCGGC 60.922 50.000 0.00 0.00 0.00 5.54
3367 7622 1.243902 TTTGTCTGTTTGGATCGGCC 58.756 50.000 0.00 0.00 37.10 6.13
3368 7623 0.608035 TTGTCTGTTTGGATCGGCCC 60.608 55.000 0.00 0.00 34.97 5.80
3369 7624 2.106683 GTCTGTTTGGATCGGCCCG 61.107 63.158 0.00 0.00 34.97 6.13
3370 7625 2.824041 CTGTTTGGATCGGCCCGG 60.824 66.667 1.90 0.00 34.97 5.73
3371 7626 3.323286 TGTTTGGATCGGCCCGGA 61.323 61.111 0.73 0.00 34.97 5.14
3372 7627 2.513897 GTTTGGATCGGCCCGGAG 60.514 66.667 0.73 0.00 34.97 4.63
3386 7641 3.817960 CGGAGGACACAAACGTTTG 57.182 52.632 33.52 33.52 43.62 2.93
3387 7642 0.306533 CGGAGGACACAAACGTTTGG 59.693 55.000 36.52 28.13 42.34 3.28
3388 7643 0.030235 GGAGGACACAAACGTTTGGC 59.970 55.000 36.52 26.29 42.34 4.52
3390 7645 1.942223 GGACACAAACGTTTGGCGC 60.942 57.895 36.52 25.70 46.11 6.53
3391 7646 1.063488 GACACAAACGTTTGGCGCT 59.937 52.632 36.52 18.77 46.11 5.92
3392 7647 1.199852 GACACAAACGTTTGGCGCTG 61.200 55.000 36.52 28.48 46.11 5.18
3393 7648 1.226547 CACAAACGTTTGGCGCTGT 60.227 52.632 36.52 18.67 46.11 4.40
3394 7649 1.226547 ACAAACGTTTGGCGCTGTG 60.227 52.632 36.52 16.68 46.11 3.66
3395 7650 1.226547 CAAACGTTTGGCGCTGTGT 60.227 52.632 29.25 0.00 46.11 3.72
3396 7651 0.800300 CAAACGTTTGGCGCTGTGTT 60.800 50.000 29.25 2.70 46.11 3.32
3397 7652 0.109039 AAACGTTTGGCGCTGTGTTT 60.109 45.000 13.81 8.98 46.11 2.83
3398 7653 0.800300 AACGTTTGGCGCTGTGTTTG 60.800 50.000 7.64 0.00 46.11 2.93
3399 7654 1.943693 CGTTTGGCGCTGTGTTTGG 60.944 57.895 7.64 0.00 0.00 3.28
3400 7655 1.591327 GTTTGGCGCTGTGTTTGGG 60.591 57.895 7.64 0.00 0.00 4.12
3401 7656 2.055042 TTTGGCGCTGTGTTTGGGT 61.055 52.632 7.64 0.00 0.00 4.51
3402 7657 2.010582 TTTGGCGCTGTGTTTGGGTC 62.011 55.000 7.64 0.00 0.00 4.46
3403 7658 4.025401 GGCGCTGTGTTTGGGTCG 62.025 66.667 7.64 0.00 0.00 4.79
3404 7659 4.025401 GCGCTGTGTTTGGGTCGG 62.025 66.667 0.00 0.00 0.00 4.79
3405 7660 4.025401 CGCTGTGTTTGGGTCGGC 62.025 66.667 0.00 0.00 0.00 5.54
3406 7661 4.025401 GCTGTGTTTGGGTCGGCG 62.025 66.667 0.00 0.00 0.00 6.46
3407 7662 4.025401 CTGTGTTTGGGTCGGCGC 62.025 66.667 0.00 0.00 0.00 6.53
3432 7687 4.308458 CAACGCTGACCCGACCCA 62.308 66.667 0.00 0.00 0.00 4.51
3433 7688 3.319198 AACGCTGACCCGACCCAT 61.319 61.111 0.00 0.00 0.00 4.00
3434 7689 2.890766 AACGCTGACCCGACCCATT 61.891 57.895 0.00 0.00 0.00 3.16
3435 7690 2.046314 CGCTGACCCGACCCATTT 60.046 61.111 0.00 0.00 0.00 2.32
3436 7691 2.106683 CGCTGACCCGACCCATTTC 61.107 63.158 0.00 0.00 0.00 2.17
3437 7692 2.106683 GCTGACCCGACCCATTTCG 61.107 63.158 0.00 0.00 38.80 3.46
3438 7693 1.295423 CTGACCCGACCCATTTCGT 59.705 57.895 0.00 0.00 37.29 3.85
3439 7694 0.739813 CTGACCCGACCCATTTCGTC 60.740 60.000 0.00 0.00 37.29 4.20
3444 7699 3.078560 GACCCATTTCGTCGACGC 58.921 61.111 32.19 12.44 39.60 5.19
3445 7700 2.785105 GACCCATTTCGTCGACGCG 61.785 63.158 32.19 19.03 39.60 6.01
3446 7701 4.204891 CCCATTTCGTCGACGCGC 62.205 66.667 32.19 0.00 39.60 6.86
3447 7702 4.204891 CCATTTCGTCGACGCGCC 62.205 66.667 32.19 0.00 39.60 6.53
3448 7703 3.474904 CATTTCGTCGACGCGCCA 61.475 61.111 32.19 13.26 39.60 5.69
3449 7704 2.735478 ATTTCGTCGACGCGCCAA 60.735 55.556 32.19 18.64 39.60 4.52
3450 7705 2.311701 ATTTCGTCGACGCGCCAAA 61.312 52.632 32.19 25.43 39.60 3.28
3451 7706 1.833434 ATTTCGTCGACGCGCCAAAA 61.833 50.000 32.19 25.08 39.60 2.44
3452 7707 2.033328 TTTCGTCGACGCGCCAAAAA 62.033 50.000 32.19 22.08 39.60 1.94
3509 7764 9.494271 TGCATTTAATTAAACACATAAAAGCCA 57.506 25.926 12.74 0.00 33.43 4.75
3510 7765 9.971744 GCATTTAATTAAACACATAAAAGCCAG 57.028 29.630 12.74 0.00 30.12 4.85
3514 7769 9.685828 TTAATTAAACACATAAAAGCCAGTCAC 57.314 29.630 0.00 0.00 0.00 3.67
3515 7770 3.896648 AACACATAAAAGCCAGTCACG 57.103 42.857 0.00 0.00 0.00 4.35
3516 7771 3.120321 ACACATAAAAGCCAGTCACGA 57.880 42.857 0.00 0.00 0.00 4.35
3517 7772 3.472652 ACACATAAAAGCCAGTCACGAA 58.527 40.909 0.00 0.00 0.00 3.85
3518 7773 3.498397 ACACATAAAAGCCAGTCACGAAG 59.502 43.478 0.00 0.00 0.00 3.79
3519 7774 3.074412 ACATAAAAGCCAGTCACGAAGG 58.926 45.455 0.00 0.00 0.00 3.46
3528 7783 4.302509 TCACGAAGGCCGGCGAAA 62.303 61.111 22.54 10.32 43.93 3.46
3529 7784 3.788766 CACGAAGGCCGGCGAAAG 61.789 66.667 22.54 14.55 43.93 2.62
3530 7785 4.309950 ACGAAGGCCGGCGAAAGT 62.310 61.111 22.54 15.26 43.93 2.66
3531 7786 3.488090 CGAAGGCCGGCGAAAGTC 61.488 66.667 22.54 11.59 33.91 3.01
3532 7787 3.125573 GAAGGCCGGCGAAAGTCC 61.126 66.667 22.54 4.09 0.00 3.85
3533 7788 3.894547 GAAGGCCGGCGAAAGTCCA 62.895 63.158 22.54 0.00 0.00 4.02
3534 7789 4.699522 AGGCCGGCGAAAGTCCAC 62.700 66.667 22.54 2.36 0.00 4.02
3536 7791 2.746277 GCCGGCGAAAGTCCACAT 60.746 61.111 12.58 0.00 0.00 3.21
3537 7792 2.332654 GCCGGCGAAAGTCCACATT 61.333 57.895 12.58 0.00 0.00 2.71
3538 7793 1.022451 GCCGGCGAAAGTCCACATTA 61.022 55.000 12.58 0.00 0.00 1.90
3539 7794 0.725117 CCGGCGAAAGTCCACATTAC 59.275 55.000 9.30 0.00 0.00 1.89
3540 7795 1.434555 CGGCGAAAGTCCACATTACA 58.565 50.000 0.00 0.00 0.00 2.41
3541 7796 2.006888 CGGCGAAAGTCCACATTACAT 58.993 47.619 0.00 0.00 0.00 2.29
3542 7797 2.418628 CGGCGAAAGTCCACATTACATT 59.581 45.455 0.00 0.00 0.00 2.71
3543 7798 3.619483 CGGCGAAAGTCCACATTACATTA 59.381 43.478 0.00 0.00 0.00 1.90
3544 7799 4.093703 CGGCGAAAGTCCACATTACATTAA 59.906 41.667 0.00 0.00 0.00 1.40
3545 7800 5.220777 CGGCGAAAGTCCACATTACATTAAT 60.221 40.000 0.00 0.00 0.00 1.40
3546 7801 6.560711 GGCGAAAGTCCACATTACATTAATT 58.439 36.000 0.00 0.00 0.00 1.40
3547 7802 7.466185 CGGCGAAAGTCCACATTACATTAATTA 60.466 37.037 0.00 0.00 0.00 1.40
3548 7803 8.185505 GGCGAAAGTCCACATTACATTAATTAA 58.814 33.333 0.00 0.00 0.00 1.40
3549 7804 9.562583 GCGAAAGTCCACATTACATTAATTAAA 57.437 29.630 1.21 0.00 0.00 1.52
3569 7824 4.961433 AACACTAAAAACTAGACGACGC 57.039 40.909 0.00 0.00 0.00 5.19
3570 7825 2.975851 ACACTAAAAACTAGACGACGCG 59.024 45.455 3.53 3.53 0.00 6.01
3571 7826 1.981533 ACTAAAAACTAGACGACGCGC 59.018 47.619 5.73 0.00 0.00 6.86
3572 7827 2.248487 CTAAAAACTAGACGACGCGCT 58.752 47.619 5.73 0.00 0.00 5.92
3573 7828 0.782384 AAAAACTAGACGACGCGCTG 59.218 50.000 5.73 0.00 0.00 5.18
3574 7829 1.615107 AAAACTAGACGACGCGCTGC 61.615 55.000 5.73 0.00 0.00 5.25
3575 7830 3.966026 AACTAGACGACGCGCTGCC 62.966 63.158 5.73 0.00 0.00 4.85
3631 7886 4.496670 CCGGTGAGGTCGATCAAC 57.503 61.111 0.00 0.00 33.34 3.18
3634 7889 3.509388 GGTGAGGTCGATCAACGTT 57.491 52.632 0.00 0.00 43.13 3.99
3635 7890 1.068474 GGTGAGGTCGATCAACGTTG 58.932 55.000 22.35 22.35 43.13 4.10
3636 7891 1.068474 GTGAGGTCGATCAACGTTGG 58.932 55.000 27.02 12.19 43.13 3.77
3637 7892 0.669318 TGAGGTCGATCAACGTTGGC 60.669 55.000 27.02 18.03 43.13 4.52
3638 7893 1.683790 GAGGTCGATCAACGTTGGCG 61.684 60.000 27.02 27.05 43.13 5.69
3639 7894 2.095843 GTCGATCAACGTTGGCGC 59.904 61.111 27.02 20.12 42.83 6.53
3640 7895 2.356433 TCGATCAACGTTGGCGCA 60.356 55.556 27.02 16.65 42.83 6.09
3641 7896 2.096406 CGATCAACGTTGGCGCAG 59.904 61.111 27.02 11.25 42.83 5.18
3642 7897 2.480555 GATCAACGTTGGCGCAGG 59.519 61.111 27.02 0.50 42.83 4.85
3643 7898 3.039202 GATCAACGTTGGCGCAGGG 62.039 63.158 27.02 0.00 42.83 4.45
3666 7921 4.636435 CCAGGGGAACGCCGTGTT 62.636 66.667 0.00 0.00 44.92 3.32
3673 7928 2.660552 AACGCCGTGTTCCAGACG 60.661 61.111 0.00 0.00 35.27 4.18
3678 7933 4.657824 CGTGTTCCAGACGGCGGT 62.658 66.667 13.24 0.00 33.08 5.68
3679 7934 3.041940 GTGTTCCAGACGGCGGTG 61.042 66.667 13.24 8.31 0.00 4.94
3680 7935 3.228017 TGTTCCAGACGGCGGTGA 61.228 61.111 13.24 0.00 0.00 4.02
3681 7936 2.264794 GTTCCAGACGGCGGTGAT 59.735 61.111 13.24 0.00 0.00 3.06
3682 7937 2.100631 GTTCCAGACGGCGGTGATG 61.101 63.158 13.24 3.79 0.00 3.07
3683 7938 2.579657 TTCCAGACGGCGGTGATGT 61.580 57.895 13.24 0.00 0.00 3.06
3684 7939 2.501223 TTCCAGACGGCGGTGATGTC 62.501 60.000 13.24 0.00 0.00 3.06
3685 7940 2.880879 CAGACGGCGGTGATGTCG 60.881 66.667 13.24 0.00 43.91 4.35
3686 7941 4.129737 AGACGGCGGTGATGTCGG 62.130 66.667 13.24 0.00 42.29 4.79
3691 7946 4.760047 GCGGTGATGTCGGGCTGT 62.760 66.667 0.00 0.00 0.00 4.40
3692 7947 2.815211 CGGTGATGTCGGGCTGTG 60.815 66.667 0.00 0.00 0.00 3.66
3693 7948 3.127533 GGTGATGTCGGGCTGTGC 61.128 66.667 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.717540 TGTAAAAACTTATAGGCAGCCTTTCA 59.282 34.615 22.26 0.83 34.61 2.69
93 94 6.636666 AATTACGCTGCAAATCAAAGATTG 57.363 33.333 0.00 0.00 0.00 2.67
115 116 8.810041 CCCCTCTAAGAACAGTTTACTACTTAA 58.190 37.037 0.00 0.00 33.85 1.85
129 130 2.174360 ACGTACACCCCCTCTAAGAAC 58.826 52.381 0.00 0.00 0.00 3.01
148 150 1.405463 GCAAACCCTAGCCATGCTTAC 59.595 52.381 0.00 0.00 40.44 2.34
149 151 1.284785 AGCAAACCCTAGCCATGCTTA 59.715 47.619 0.00 0.00 44.43 3.09
171 173 6.492087 TGAGAATGGGTACGTGTCATATATGA 59.508 38.462 11.49 11.49 0.00 2.15
206 208 4.577283 GTGGGAGTGTAGCAAGTGTAAAAA 59.423 41.667 0.00 0.00 0.00 1.94
208 210 3.495453 GGTGGGAGTGTAGCAAGTGTAAA 60.495 47.826 0.00 0.00 0.00 2.01
218 220 4.753516 TTGTGATATGGTGGGAGTGTAG 57.246 45.455 0.00 0.00 0.00 2.74
219 221 5.708736 ATTTGTGATATGGTGGGAGTGTA 57.291 39.130 0.00 0.00 0.00 2.90
265 268 5.203358 TCGAAGTTGCATCTTAATCAACG 57.797 39.130 9.98 8.48 43.35 4.10
285 288 8.697846 TTGTATGTAAAAAGGAGTGAGTATCG 57.302 34.615 0.00 0.00 38.61 2.92
297 300 6.325919 TGAAGTGGCCTTGTATGTAAAAAG 57.674 37.500 3.32 0.00 0.00 2.27
300 304 6.245408 AGAATGAAGTGGCCTTGTATGTAAA 58.755 36.000 3.32 0.00 0.00 2.01
304 308 4.521146 AGAGAATGAAGTGGCCTTGTATG 58.479 43.478 3.32 0.00 0.00 2.39
367 371 8.059798 AGCATTCTTTTTGTGACATATAGCTT 57.940 30.769 0.00 0.00 0.00 3.74
387 391 8.635328 TCTTTGAAATGTGCATCATATAGCATT 58.365 29.630 0.00 0.00 43.44 3.56
395 399 7.496591 ACAAAAGTTCTTTGAAATGTGCATCAT 59.503 29.630 4.32 0.00 34.51 2.45
396 400 6.817641 ACAAAAGTTCTTTGAAATGTGCATCA 59.182 30.769 4.32 0.00 33.83 3.07
399 403 7.172190 TCAAACAAAAGTTCTTTGAAATGTGCA 59.828 29.630 4.32 0.00 32.30 4.57
400 404 7.517321 TCAAACAAAAGTTCTTTGAAATGTGC 58.483 30.769 4.32 0.00 32.30 4.57
438 442 8.780249 GTTTAACACGATATGGGCTAATATGTT 58.220 33.333 0.00 0.00 0.00 2.71
444 448 7.450124 TTTTGTTTAACACGATATGGGCTAA 57.550 32.000 0.00 0.00 0.00 3.09
447 451 8.865590 ATAATTTTGTTTAACACGATATGGGC 57.134 30.769 0.00 0.00 0.00 5.36
476 480 6.762661 ACTTTGATTTTCCTGTGAAATTGTGG 59.237 34.615 0.00 0.00 40.08 4.17
495 500 5.755409 TTCTAGATACAAGGCCACTTTGA 57.245 39.130 5.01 0.00 33.81 2.69
512 517 6.910536 ATCTAACTGGCATTTCGTTTCTAG 57.089 37.500 0.00 0.00 0.00 2.43
513 518 8.662141 GTTTATCTAACTGGCATTTCGTTTCTA 58.338 33.333 0.00 0.00 33.79 2.10
524 529 5.957771 AGAGGATGTTTATCTAACTGGCA 57.042 39.130 0.00 0.00 37.64 4.92
550 679 8.871862 CACTTTGTTTTTCTTGTGAAATCATGA 58.128 29.630 0.00 0.00 41.24 3.07
554 683 6.456853 GGCCACTTTGTTTTTCTTGTGAAATC 60.457 38.462 0.00 0.00 41.24 2.17
580 709 7.593273 CGATTGGCTTTTTGTTTCTGTATACAA 59.407 33.333 7.06 0.00 32.76 2.41
585 714 4.580995 TCCGATTGGCTTTTTGTTTCTGTA 59.419 37.500 0.00 0.00 34.14 2.74
586 715 3.383185 TCCGATTGGCTTTTTGTTTCTGT 59.617 39.130 0.00 0.00 34.14 3.41
594 723 4.402155 TGATGCTTATCCGATTGGCTTTTT 59.598 37.500 0.00 0.00 34.14 1.94
605 734 5.814705 GGGATAGAAAGATGATGCTTATCCG 59.185 44.000 0.00 0.00 33.94 4.18
618 747 6.155565 TCGTGTGAAATTAGGGGATAGAAAGA 59.844 38.462 0.00 0.00 0.00 2.52
619 748 6.346096 TCGTGTGAAATTAGGGGATAGAAAG 58.654 40.000 0.00 0.00 0.00 2.62
620 749 6.302535 TCGTGTGAAATTAGGGGATAGAAA 57.697 37.500 0.00 0.00 0.00 2.52
621 750 5.943349 TCGTGTGAAATTAGGGGATAGAA 57.057 39.130 0.00 0.00 0.00 2.10
641 770 2.887337 ACAAGGCCACTTTGTTTTTCG 58.113 42.857 5.01 0.00 33.81 3.46
643 772 4.126437 GCATACAAGGCCACTTTGTTTTT 58.874 39.130 13.48 0.00 33.81 1.94
675 804 4.737578 AGATGATGCTTATCCAATTGGCT 58.262 39.130 20.33 13.15 34.44 4.75
689 818 6.240894 TGTGAAATTAGGGGATAGATGATGC 58.759 40.000 0.00 0.00 0.00 3.91
694 823 9.713684 TTTTTCATGTGAAATTAGGGGATAGAT 57.286 29.630 8.82 0.00 42.83 1.98
697 826 8.657387 TGTTTTTCATGTGAAATTAGGGGATA 57.343 30.769 8.82 0.00 42.83 2.59
730 859 6.621316 TGACCTTTCGTTTATGCTTACAAA 57.379 33.333 0.00 0.00 0.00 2.83
780 909 1.572447 CACCCAAAACCGCACGTAG 59.428 57.895 0.00 0.00 0.00 3.51
944 1101 4.035102 GTGGGAGAGTGGGGGTGC 62.035 72.222 0.00 0.00 0.00 5.01
1011 1175 1.805869 CTTGCTCTGGTTCTGGTCTG 58.194 55.000 0.00 0.00 0.00 3.51
1013 1177 0.036022 AGCTTGCTCTGGTTCTGGTC 59.964 55.000 0.00 0.00 0.00 4.02
1014 1178 0.036022 GAGCTTGCTCTGGTTCTGGT 59.964 55.000 14.65 0.00 0.00 4.00
1015 1179 1.018226 CGAGCTTGCTCTGGTTCTGG 61.018 60.000 18.75 0.00 0.00 3.86
1016 1180 1.018226 CCGAGCTTGCTCTGGTTCTG 61.018 60.000 18.75 3.35 0.00 3.02
1019 1183 1.294780 CTCCGAGCTTGCTCTGGTT 59.705 57.895 22.50 0.00 0.00 3.67
1021 1185 2.511145 GCTCCGAGCTTGCTCTGG 60.511 66.667 18.75 19.27 38.45 3.86
1022 1186 2.099431 GTGCTCCGAGCTTGCTCTG 61.099 63.158 20.87 13.25 42.97 3.35
1023 1187 2.264166 GTGCTCCGAGCTTGCTCT 59.736 61.111 20.87 0.00 42.97 4.09
1024 1188 2.817396 GGTGCTCCGAGCTTGCTC 60.817 66.667 20.87 12.20 42.97 4.26
1059 1223 1.508088 GATGGAACTTTGCTGGGCG 59.492 57.895 0.00 0.00 0.00 6.13
1060 1224 1.508088 CGATGGAACTTTGCTGGGC 59.492 57.895 0.00 0.00 0.00 5.36
1061 1225 1.508088 GCGATGGAACTTTGCTGGG 59.492 57.895 0.00 0.00 0.00 4.45
1062 1226 1.135315 CGCGATGGAACTTTGCTGG 59.865 57.895 0.00 0.00 0.00 4.85
1063 1227 0.516877 TTCGCGATGGAACTTTGCTG 59.483 50.000 10.88 0.00 0.00 4.41
1111 1275 3.918220 GAAGCTCATCGCGCGTGG 61.918 66.667 30.98 22.25 45.59 4.94
1112 1276 2.854214 GAGAAGCTCATCGCGCGTG 61.854 63.158 30.98 25.21 45.59 5.34
1113 1277 2.580867 GAGAAGCTCATCGCGCGT 60.581 61.111 30.98 14.63 45.59 6.01
1361 1539 1.972223 AGTGAGAGGGACACGGTCG 60.972 63.158 0.00 0.00 42.25 4.79
1362 1540 1.587054 CAGTGAGAGGGACACGGTC 59.413 63.158 0.00 0.00 42.25 4.79
1363 1541 2.574955 GCAGTGAGAGGGACACGGT 61.575 63.158 0.00 0.00 42.25 4.83
1364 1542 2.262915 GCAGTGAGAGGGACACGG 59.737 66.667 0.00 0.00 42.25 4.94
1365 1543 2.262915 GGCAGTGAGAGGGACACG 59.737 66.667 0.00 0.00 42.25 4.49
1366 1544 2.100879 AACGGCAGTGAGAGGGACAC 62.101 60.000 0.00 0.00 38.38 3.67
1367 1545 1.816863 GAACGGCAGTGAGAGGGACA 61.817 60.000 0.00 0.00 0.00 4.02
1368 1546 1.079750 GAACGGCAGTGAGAGGGAC 60.080 63.158 0.00 0.00 0.00 4.46
1371 1549 1.216710 GAGGAACGGCAGTGAGAGG 59.783 63.158 0.00 0.00 0.00 3.69
1377 1555 2.048127 GCGAAGAGGAACGGCAGT 60.048 61.111 0.00 0.00 0.00 4.40
1527 1705 1.431488 TTACGTAGATCTCGCCGCGT 61.431 55.000 13.39 6.48 36.52 6.01
1806 1984 0.456312 CCTCCGTCACGTACAGCTTC 60.456 60.000 0.00 0.00 0.00 3.86
2010 6165 4.129737 ACCATCCGCCACTCGTCG 62.130 66.667 0.00 0.00 36.19 5.12
2297 6458 3.952628 CTTTCTCCCGCCGGTGACC 62.953 68.421 18.79 0.00 31.34 4.02
2310 6471 0.984995 CGGGTCTCCTTTCCCTTTCT 59.015 55.000 0.00 0.00 41.40 2.52
2350 6512 0.108520 GATGACGGAGGCGTTGGTAA 60.109 55.000 0.00 0.00 0.00 2.85
2351 6513 1.252215 TGATGACGGAGGCGTTGGTA 61.252 55.000 0.00 0.00 0.00 3.25
2513 6685 3.031417 ATAAAGGGCACGCTCGGCT 62.031 57.895 0.00 0.00 0.00 5.52
2514 6686 2.513897 ATAAAGGGCACGCTCGGC 60.514 61.111 0.00 0.00 0.00 5.54
2519 6691 2.800736 CAGGCATAAAGGGCACGC 59.199 61.111 0.00 0.00 35.46 5.34
2524 6696 0.394762 TGCTCAGCAGGCATAAAGGG 60.395 55.000 0.00 0.00 34.56 3.95
2555 6727 4.400961 GCACGCTTCCTCCCTGCT 62.401 66.667 0.00 0.00 0.00 4.24
2557 6729 4.379243 ACGCACGCTTCCTCCCTG 62.379 66.667 0.00 0.00 0.00 4.45
2558 6730 4.379243 CACGCACGCTTCCTCCCT 62.379 66.667 0.00 0.00 0.00 4.20
2683 6874 1.636148 TTGTTGCGGGTAGTAGGAGT 58.364 50.000 0.00 0.00 0.00 3.85
2684 6875 2.740447 GTTTTGTTGCGGGTAGTAGGAG 59.260 50.000 0.00 0.00 0.00 3.69
2685 6876 2.550639 GGTTTTGTTGCGGGTAGTAGGA 60.551 50.000 0.00 0.00 0.00 2.94
2686 6877 1.808343 GGTTTTGTTGCGGGTAGTAGG 59.192 52.381 0.00 0.00 0.00 3.18
2687 6878 1.461897 CGGTTTTGTTGCGGGTAGTAG 59.538 52.381 0.00 0.00 0.00 2.57
2688 6879 1.510776 CGGTTTTGTTGCGGGTAGTA 58.489 50.000 0.00 0.00 0.00 1.82
2689 6880 1.788067 GCGGTTTTGTTGCGGGTAGT 61.788 55.000 0.00 0.00 0.00 2.73
2690 6881 1.081708 GCGGTTTTGTTGCGGGTAG 60.082 57.895 0.00 0.00 0.00 3.18
2691 6882 1.102222 AAGCGGTTTTGTTGCGGGTA 61.102 50.000 0.00 0.00 0.00 3.69
2692 6883 1.950973 AAAGCGGTTTTGTTGCGGGT 61.951 50.000 6.80 0.00 0.00 5.28
2693 6884 1.227118 AAAGCGGTTTTGTTGCGGG 60.227 52.632 6.80 0.00 0.00 6.13
2697 6888 2.577449 AGTCCAAAGCGGTTTTGTTG 57.423 45.000 10.41 0.00 43.78 3.33
2704 6895 2.978010 CGCCAAGTCCAAAGCGGT 60.978 61.111 0.00 0.00 44.64 5.68
2720 6911 3.669036 CTCACTCCACTCCGTCGCG 62.669 68.421 0.00 0.00 0.00 5.87
2746 6986 3.071892 TCGGCGGGGAATATGTATTTCTT 59.928 43.478 7.21 0.00 0.00 2.52
2820 7060 0.457509 GCGGCTCATGATCGATCGAT 60.458 55.000 29.76 29.76 37.59 3.59
2821 7061 1.081175 GCGGCTCATGATCGATCGA 60.081 57.895 21.86 21.86 0.00 3.59
2873 7113 1.183030 TGGTCCACCGTCGACTCATT 61.183 55.000 14.70 0.00 39.43 2.57
2874 7114 0.970937 ATGGTCCACCGTCGACTCAT 60.971 55.000 14.70 3.39 39.43 2.90
2875 7115 1.183030 AATGGTCCACCGTCGACTCA 61.183 55.000 14.70 1.18 39.43 3.41
2876 7116 0.736325 CAATGGTCCACCGTCGACTC 60.736 60.000 14.70 0.00 39.43 3.36
2877 7117 1.292223 CAATGGTCCACCGTCGACT 59.708 57.895 14.70 0.00 39.43 4.18
2878 7118 0.601841 AACAATGGTCCACCGTCGAC 60.602 55.000 5.18 5.18 39.43 4.20
2879 7119 0.601576 CAACAATGGTCCACCGTCGA 60.602 55.000 0.00 0.00 39.43 4.20
2880 7120 1.573829 CCAACAATGGTCCACCGTCG 61.574 60.000 0.00 0.00 42.18 5.12
2881 7121 2.253513 CCAACAATGGTCCACCGTC 58.746 57.895 0.00 0.00 42.18 4.79
2882 7122 4.492604 CCAACAATGGTCCACCGT 57.507 55.556 0.00 0.00 42.18 4.83
2903 7145 1.229428 CTGCTTTTTCTCTCGCACCA 58.771 50.000 0.00 0.00 0.00 4.17
2906 7148 0.606401 CCCCTGCTTTTTCTCTCGCA 60.606 55.000 0.00 0.00 0.00 5.10
2910 7152 0.036875 CCGTCCCCTGCTTTTTCTCT 59.963 55.000 0.00 0.00 0.00 3.10
2913 7155 1.074248 TCCCGTCCCCTGCTTTTTC 59.926 57.895 0.00 0.00 0.00 2.29
2916 7158 4.016706 CGTCCCGTCCCCTGCTTT 62.017 66.667 0.00 0.00 0.00 3.51
2943 7185 2.356793 CCAGATCGCAGATCCGCC 60.357 66.667 12.81 0.00 45.12 6.13
2944 7186 1.663074 GTCCAGATCGCAGATCCGC 60.663 63.158 12.81 0.00 45.12 5.54
3007 7259 1.366366 CGTCCCGTGGTTGAGACTT 59.634 57.895 0.00 0.00 0.00 3.01
3009 7261 2.048503 CCGTCCCGTGGTTGAGAC 60.049 66.667 0.00 0.00 0.00 3.36
3010 7262 2.203523 TCCGTCCCGTGGTTGAGA 60.204 61.111 0.00 0.00 0.00 3.27
3012 7264 3.980989 CGTCCGTCCCGTGGTTGA 61.981 66.667 0.00 0.00 0.00 3.18
3023 7275 0.826672 GGAGATACCCATCCGTCCGT 60.827 60.000 0.00 0.00 0.00 4.69
3024 7276 0.539901 AGGAGATACCCATCCGTCCG 60.540 60.000 0.00 0.00 40.73 4.79
3033 7288 3.644265 GAGGAAAAGAGGAGGAGATACCC 59.356 52.174 0.00 0.00 40.05 3.69
3045 7300 4.303257 GGGCCACGAGGAAAAGAG 57.697 61.111 4.39 0.00 36.89 2.85
3056 7311 3.471244 CTCGACTCGATCGGGCCAC 62.471 68.421 16.63 6.12 46.35 5.01
3057 7312 3.209812 CTCGACTCGATCGGGCCA 61.210 66.667 16.63 0.00 46.35 5.36
3256 7511 6.126739 GGGGAGTGGAATAAAAGTCTATCTGT 60.127 42.308 0.00 0.00 0.00 3.41
3257 7512 6.100424 AGGGGAGTGGAATAAAAGTCTATCTG 59.900 42.308 0.00 0.00 0.00 2.90
3258 7513 6.213525 AGGGGAGTGGAATAAAAGTCTATCT 58.786 40.000 0.00 0.00 0.00 1.98
3259 7514 6.502074 AGGGGAGTGGAATAAAAGTCTATC 57.498 41.667 0.00 0.00 0.00 2.08
3260 7515 6.217693 ACAAGGGGAGTGGAATAAAAGTCTAT 59.782 38.462 0.00 0.00 0.00 1.98
3261 7516 5.550403 ACAAGGGGAGTGGAATAAAAGTCTA 59.450 40.000 0.00 0.00 0.00 2.59
3262 7517 4.354087 ACAAGGGGAGTGGAATAAAAGTCT 59.646 41.667 0.00 0.00 0.00 3.24
3263 7518 4.663334 ACAAGGGGAGTGGAATAAAAGTC 58.337 43.478 0.00 0.00 0.00 3.01
3264 7519 4.741928 ACAAGGGGAGTGGAATAAAAGT 57.258 40.909 0.00 0.00 0.00 2.66
3265 7520 7.232737 ACTTTTACAAGGGGAGTGGAATAAAAG 59.767 37.037 10.19 10.19 41.15 2.27
3266 7521 7.070629 ACTTTTACAAGGGGAGTGGAATAAAA 58.929 34.615 0.00 0.00 33.82 1.52
3267 7522 6.616577 ACTTTTACAAGGGGAGTGGAATAAA 58.383 36.000 0.00 0.00 33.82 1.40
3268 7523 6.208840 ACTTTTACAAGGGGAGTGGAATAA 57.791 37.500 0.00 0.00 33.82 1.40
3269 7524 5.853572 ACTTTTACAAGGGGAGTGGAATA 57.146 39.130 0.00 0.00 33.82 1.75
3270 7525 4.741928 ACTTTTACAAGGGGAGTGGAAT 57.258 40.909 0.00 0.00 33.82 3.01
3271 7526 4.529716 AACTTTTACAAGGGGAGTGGAA 57.470 40.909 0.00 0.00 33.82 3.53
3272 7527 4.529716 AAACTTTTACAAGGGGAGTGGA 57.470 40.909 0.00 0.00 33.82 4.02
3273 7528 4.202212 CCAAAACTTTTACAAGGGGAGTGG 60.202 45.833 0.00 0.00 33.82 4.00
3274 7529 4.647399 TCCAAAACTTTTACAAGGGGAGTG 59.353 41.667 0.00 0.00 33.82 3.51
3275 7530 4.874199 TCCAAAACTTTTACAAGGGGAGT 58.126 39.130 0.00 0.00 33.82 3.85
3276 7531 4.262036 GCTCCAAAACTTTTACAAGGGGAG 60.262 45.833 12.69 12.69 39.17 4.30
3277 7532 3.639561 GCTCCAAAACTTTTACAAGGGGA 59.360 43.478 0.00 0.00 33.82 4.81
3278 7533 3.386402 TGCTCCAAAACTTTTACAAGGGG 59.614 43.478 0.00 0.00 33.82 4.79
3279 7534 4.664150 TGCTCCAAAACTTTTACAAGGG 57.336 40.909 0.00 0.00 33.82 3.95
3280 7535 7.552458 AAAATGCTCCAAAACTTTTACAAGG 57.448 32.000 0.00 0.00 33.82 3.61
3303 7558 8.559536 CGGCTTTGCTCTCATTATAAGAAATAA 58.440 33.333 0.00 0.00 0.00 1.40
3304 7559 7.931407 TCGGCTTTGCTCTCATTATAAGAAATA 59.069 33.333 0.00 0.00 0.00 1.40
3305 7560 6.767902 TCGGCTTTGCTCTCATTATAAGAAAT 59.232 34.615 0.00 0.00 0.00 2.17
3306 7561 6.037172 GTCGGCTTTGCTCTCATTATAAGAAA 59.963 38.462 0.00 0.00 0.00 2.52
3307 7562 5.523916 GTCGGCTTTGCTCTCATTATAAGAA 59.476 40.000 0.00 0.00 0.00 2.52
3308 7563 5.050490 GTCGGCTTTGCTCTCATTATAAGA 58.950 41.667 0.00 0.00 0.00 2.10
3309 7564 4.212214 GGTCGGCTTTGCTCTCATTATAAG 59.788 45.833 0.00 0.00 0.00 1.73
3310 7565 4.127171 GGTCGGCTTTGCTCTCATTATAA 58.873 43.478 0.00 0.00 0.00 0.98
3311 7566 3.494398 GGGTCGGCTTTGCTCTCATTATA 60.494 47.826 0.00 0.00 0.00 0.98
3312 7567 2.565841 GGTCGGCTTTGCTCTCATTAT 58.434 47.619 0.00 0.00 0.00 1.28
3313 7568 1.406887 GGGTCGGCTTTGCTCTCATTA 60.407 52.381 0.00 0.00 0.00 1.90
3314 7569 0.678048 GGGTCGGCTTTGCTCTCATT 60.678 55.000 0.00 0.00 0.00 2.57
3315 7570 1.078143 GGGTCGGCTTTGCTCTCAT 60.078 57.895 0.00 0.00 0.00 2.90
3316 7571 2.050836 TTGGGTCGGCTTTGCTCTCA 62.051 55.000 0.00 0.00 0.00 3.27
3317 7572 0.889186 TTTGGGTCGGCTTTGCTCTC 60.889 55.000 0.00 0.00 0.00 3.20
3318 7573 1.150536 TTTGGGTCGGCTTTGCTCT 59.849 52.632 0.00 0.00 0.00 4.09
3319 7574 1.285950 GTTTGGGTCGGCTTTGCTC 59.714 57.895 0.00 0.00 0.00 4.26
3320 7575 2.551912 CGTTTGGGTCGGCTTTGCT 61.552 57.895 0.00 0.00 0.00 3.91
3321 7576 2.050442 CGTTTGGGTCGGCTTTGC 60.050 61.111 0.00 0.00 0.00 3.68
3322 7577 1.894756 TCCGTTTGGGTCGGCTTTG 60.895 57.895 0.00 0.00 46.49 2.77
3323 7578 1.895231 GTCCGTTTGGGTCGGCTTT 60.895 57.895 0.00 0.00 46.49 3.51
3324 7579 2.281276 GTCCGTTTGGGTCGGCTT 60.281 61.111 0.00 0.00 46.49 4.35
3325 7580 4.675029 CGTCCGTTTGGGTCGGCT 62.675 66.667 0.00 0.00 46.49 5.52
3332 7587 3.189010 AAAAGCGCCGTCCGTTTGG 62.189 57.895 2.29 0.00 39.53 3.28
3333 7588 2.008697 CAAAAGCGCCGTCCGTTTG 61.009 57.895 2.29 1.85 39.53 2.93
3334 7589 2.330041 CAAAAGCGCCGTCCGTTT 59.670 55.556 2.29 0.00 42.34 3.60
3335 7590 2.888998 GACAAAAGCGCCGTCCGTT 61.889 57.895 2.29 0.00 39.71 4.44
3336 7591 3.343421 GACAAAAGCGCCGTCCGT 61.343 61.111 2.29 0.00 39.71 4.69
3337 7592 3.041940 AGACAAAAGCGCCGTCCG 61.042 61.111 2.29 0.00 40.75 4.79
3338 7593 1.782028 AACAGACAAAAGCGCCGTCC 61.782 55.000 2.29 0.00 0.00 4.79
3339 7594 0.028902 AAACAGACAAAAGCGCCGTC 59.971 50.000 2.29 6.25 0.00 4.79
3340 7595 0.248458 CAAACAGACAAAAGCGCCGT 60.248 50.000 2.29 0.00 0.00 5.68
3341 7596 0.934436 CCAAACAGACAAAAGCGCCG 60.934 55.000 2.29 0.00 0.00 6.46
3342 7597 0.383949 TCCAAACAGACAAAAGCGCC 59.616 50.000 2.29 0.00 0.00 6.53
3343 7598 2.319472 GATCCAAACAGACAAAAGCGC 58.681 47.619 0.00 0.00 0.00 5.92
3344 7599 2.574322 CGATCCAAACAGACAAAAGCG 58.426 47.619 0.00 0.00 0.00 4.68
3345 7600 2.922335 GCCGATCCAAACAGACAAAAGC 60.922 50.000 0.00 0.00 0.00 3.51
3346 7601 2.351738 GGCCGATCCAAACAGACAAAAG 60.352 50.000 0.00 0.00 34.01 2.27
3347 7602 1.611491 GGCCGATCCAAACAGACAAAA 59.389 47.619 0.00 0.00 34.01 2.44
3348 7603 1.243902 GGCCGATCCAAACAGACAAA 58.756 50.000 0.00 0.00 34.01 2.83
3349 7604 0.608035 GGGCCGATCCAAACAGACAA 60.608 55.000 0.00 0.00 36.21 3.18
3350 7605 1.002624 GGGCCGATCCAAACAGACA 60.003 57.895 0.00 0.00 36.21 3.41
3351 7606 2.106683 CGGGCCGATCCAAACAGAC 61.107 63.158 24.41 0.00 36.21 3.51
3352 7607 2.267642 CGGGCCGATCCAAACAGA 59.732 61.111 24.41 0.00 36.21 3.41
3353 7608 2.824041 CCGGGCCGATCCAAACAG 60.824 66.667 30.79 2.47 36.21 3.16
3354 7609 3.323286 TCCGGGCCGATCCAAACA 61.323 61.111 30.79 0.00 36.21 2.83
3355 7610 2.513897 CTCCGGGCCGATCCAAAC 60.514 66.667 30.79 0.00 36.21 2.93
3356 7611 3.792736 CCTCCGGGCCGATCCAAA 61.793 66.667 30.79 4.20 36.21 3.28
3357 7612 4.789173 TCCTCCGGGCCGATCCAA 62.789 66.667 30.79 5.63 36.21 3.53
3360 7615 4.222847 GTGTCCTCCGGGCCGATC 62.223 72.222 30.79 12.69 0.00 3.69
3363 7618 4.323477 TTTGTGTCCTCCGGGCCG 62.323 66.667 21.46 21.46 0.00 6.13
3364 7619 2.671963 GTTTGTGTCCTCCGGGCC 60.672 66.667 0.00 0.00 0.00 5.80
3365 7620 3.047877 CGTTTGTGTCCTCCGGGC 61.048 66.667 0.00 0.00 0.00 6.13
3366 7621 0.816421 AAACGTTTGTGTCCTCCGGG 60.816 55.000 13.81 0.00 0.00 5.73
3367 7622 0.306533 CAAACGTTTGTGTCCTCCGG 59.693 55.000 28.72 0.00 33.59 5.14
3368 7623 0.306533 CCAAACGTTTGTGTCCTCCG 59.693 55.000 32.63 15.60 36.45 4.63
3369 7624 0.030235 GCCAAACGTTTGTGTCCTCC 59.970 55.000 32.63 12.70 36.45 4.30
3370 7625 0.316689 CGCCAAACGTTTGTGTCCTC 60.317 55.000 32.63 16.39 36.45 3.71
3371 7626 1.725066 CGCCAAACGTTTGTGTCCT 59.275 52.632 32.63 0.13 36.45 3.85
3372 7627 1.942223 GCGCCAAACGTTTGTGTCC 60.942 57.895 32.63 19.34 46.11 4.02
3373 7628 1.063488 AGCGCCAAACGTTTGTGTC 59.937 52.632 32.63 22.03 46.11 3.67
3374 7629 1.226547 CAGCGCCAAACGTTTGTGT 60.227 52.632 32.63 15.63 46.11 3.72
3375 7630 1.226547 ACAGCGCCAAACGTTTGTG 60.227 52.632 32.63 26.58 46.11 3.33
3376 7631 1.226547 CACAGCGCCAAACGTTTGT 60.227 52.632 32.63 16.31 46.11 2.83
3377 7632 0.800300 AACACAGCGCCAAACGTTTG 60.800 50.000 29.80 29.80 46.11 2.93
3378 7633 0.109039 AAACACAGCGCCAAACGTTT 60.109 45.000 7.96 7.96 46.11 3.60
3379 7634 0.800300 CAAACACAGCGCCAAACGTT 60.800 50.000 2.29 0.00 46.11 3.99
3380 7635 1.226547 CAAACACAGCGCCAAACGT 60.227 52.632 2.29 0.00 46.11 3.99
3382 7637 1.591327 CCCAAACACAGCGCCAAAC 60.591 57.895 2.29 0.00 0.00 2.93
3383 7638 2.010582 GACCCAAACACAGCGCCAAA 62.011 55.000 2.29 0.00 0.00 3.28
3384 7639 2.441164 ACCCAAACACAGCGCCAA 60.441 55.556 2.29 0.00 0.00 4.52
3385 7640 2.904866 GACCCAAACACAGCGCCA 60.905 61.111 2.29 0.00 0.00 5.69
3386 7641 4.025401 CGACCCAAACACAGCGCC 62.025 66.667 2.29 0.00 0.00 6.53
3387 7642 4.025401 CCGACCCAAACACAGCGC 62.025 66.667 0.00 0.00 0.00 5.92
3388 7643 4.025401 GCCGACCCAAACACAGCG 62.025 66.667 0.00 0.00 0.00 5.18
3389 7644 4.025401 CGCCGACCCAAACACAGC 62.025 66.667 0.00 0.00 0.00 4.40
3390 7645 4.025401 GCGCCGACCCAAACACAG 62.025 66.667 0.00 0.00 0.00 3.66
3415 7670 3.605749 ATGGGTCGGGTCAGCGTTG 62.606 63.158 0.00 0.00 0.00 4.10
3416 7671 2.406002 AAATGGGTCGGGTCAGCGTT 62.406 55.000 0.00 0.00 0.00 4.84
3417 7672 2.798148 GAAATGGGTCGGGTCAGCGT 62.798 60.000 0.00 0.00 0.00 5.07
3418 7673 2.046314 AAATGGGTCGGGTCAGCG 60.046 61.111 0.00 0.00 0.00 5.18
3419 7674 2.106683 CGAAATGGGTCGGGTCAGC 61.107 63.158 0.00 0.00 37.37 4.26
3420 7675 0.739813 GACGAAATGGGTCGGGTCAG 60.740 60.000 0.00 0.00 45.40 3.51
3421 7676 1.294138 GACGAAATGGGTCGGGTCA 59.706 57.895 0.00 0.00 45.40 4.02
3422 7677 4.196965 GACGAAATGGGTCGGGTC 57.803 61.111 0.00 0.00 45.40 4.46
3427 7682 2.785105 CGCGTCGACGAAATGGGTC 61.785 63.158 39.74 18.76 43.02 4.46
3428 7683 2.807895 CGCGTCGACGAAATGGGT 60.808 61.111 39.74 0.00 43.02 4.51
3429 7684 4.204891 GCGCGTCGACGAAATGGG 62.205 66.667 39.74 19.56 43.02 4.00
3430 7685 4.204891 GGCGCGTCGACGAAATGG 62.205 66.667 39.74 22.13 43.02 3.16
3431 7686 2.487443 TTTGGCGCGTCGACGAAATG 62.487 55.000 39.74 24.98 37.93 2.32
3432 7687 1.833434 TTTTGGCGCGTCGACGAAAT 61.833 50.000 39.74 0.00 42.44 2.17
3433 7688 2.033328 TTTTTGGCGCGTCGACGAAA 62.033 50.000 39.74 26.71 45.13 3.46
3434 7689 2.523507 TTTTTGGCGCGTCGACGAA 61.524 52.632 39.74 22.62 37.93 3.85
3435 7690 2.960659 TTTTTGGCGCGTCGACGA 60.961 55.556 39.74 17.73 37.93 4.20
3483 7738 9.494271 TGGCTTTTATGTGTTTAATTAAATGCA 57.506 25.926 13.54 14.48 32.69 3.96
3484 7739 9.971744 CTGGCTTTTATGTGTTTAATTAAATGC 57.028 29.630 13.54 9.96 0.00 3.56
3488 7743 9.685828 GTGACTGGCTTTTATGTGTTTAATTAA 57.314 29.630 0.00 0.00 0.00 1.40
3489 7744 8.018520 CGTGACTGGCTTTTATGTGTTTAATTA 58.981 33.333 0.00 0.00 0.00 1.40
3490 7745 6.861055 CGTGACTGGCTTTTATGTGTTTAATT 59.139 34.615 0.00 0.00 0.00 1.40
3491 7746 6.205853 TCGTGACTGGCTTTTATGTGTTTAAT 59.794 34.615 0.00 0.00 0.00 1.40
3492 7747 5.527951 TCGTGACTGGCTTTTATGTGTTTAA 59.472 36.000 0.00 0.00 0.00 1.52
3493 7748 5.057819 TCGTGACTGGCTTTTATGTGTTTA 58.942 37.500 0.00 0.00 0.00 2.01
3494 7749 3.880490 TCGTGACTGGCTTTTATGTGTTT 59.120 39.130 0.00 0.00 0.00 2.83
3495 7750 3.472652 TCGTGACTGGCTTTTATGTGTT 58.527 40.909 0.00 0.00 0.00 3.32
3496 7751 3.120321 TCGTGACTGGCTTTTATGTGT 57.880 42.857 0.00 0.00 0.00 3.72
3497 7752 3.120199 CCTTCGTGACTGGCTTTTATGTG 60.120 47.826 0.00 0.00 0.00 3.21
3498 7753 3.074412 CCTTCGTGACTGGCTTTTATGT 58.926 45.455 0.00 0.00 0.00 2.29
3499 7754 2.159517 GCCTTCGTGACTGGCTTTTATG 60.160 50.000 0.00 0.00 43.05 1.90
3500 7755 2.084546 GCCTTCGTGACTGGCTTTTAT 58.915 47.619 0.00 0.00 43.05 1.40
3501 7756 1.519408 GCCTTCGTGACTGGCTTTTA 58.481 50.000 0.00 0.00 43.05 1.52
3502 7757 1.172812 GGCCTTCGTGACTGGCTTTT 61.173 55.000 0.00 0.00 45.45 2.27
3503 7758 1.600916 GGCCTTCGTGACTGGCTTT 60.601 57.895 0.00 0.00 45.45 3.51
3504 7759 2.032681 GGCCTTCGTGACTGGCTT 59.967 61.111 0.00 0.00 45.45 4.35
3505 7760 4.379243 CGGCCTTCGTGACTGGCT 62.379 66.667 0.00 0.00 45.45 4.75
3511 7766 4.302509 TTTCGCCGGCCTTCGTGA 62.303 61.111 23.46 8.31 37.11 4.35
3512 7767 3.788766 CTTTCGCCGGCCTTCGTG 61.789 66.667 23.46 5.48 37.11 4.35
3513 7768 4.309950 ACTTTCGCCGGCCTTCGT 62.310 61.111 23.46 10.70 37.11 3.85
3514 7769 3.488090 GACTTTCGCCGGCCTTCG 61.488 66.667 23.46 6.82 38.88 3.79
3515 7770 3.125573 GGACTTTCGCCGGCCTTC 61.126 66.667 23.46 9.81 0.00 3.46
3516 7771 3.948719 TGGACTTTCGCCGGCCTT 61.949 61.111 23.46 0.00 0.00 4.35
3517 7772 4.699522 GTGGACTTTCGCCGGCCT 62.700 66.667 23.46 0.00 0.00 5.19
3519 7774 1.022451 TAATGTGGACTTTCGCCGGC 61.022 55.000 19.07 19.07 0.00 6.13
3520 7775 0.725117 GTAATGTGGACTTTCGCCGG 59.275 55.000 0.00 0.00 0.00 6.13
3521 7776 1.434555 TGTAATGTGGACTTTCGCCG 58.565 50.000 0.00 0.00 0.00 6.46
3522 7777 5.554822 TTAATGTAATGTGGACTTTCGCC 57.445 39.130 0.00 0.00 0.00 5.54
3523 7778 9.562583 TTTAATTAATGTAATGTGGACTTTCGC 57.437 29.630 0.00 0.00 0.00 4.70
3543 7798 8.006027 GCGTCGTCTAGTTTTTAGTGTTTAATT 58.994 33.333 0.00 0.00 0.00 1.40
3544 7799 7.504818 GCGTCGTCTAGTTTTTAGTGTTTAAT 58.495 34.615 0.00 0.00 0.00 1.40
3545 7800 6.344936 CGCGTCGTCTAGTTTTTAGTGTTTAA 60.345 38.462 0.00 0.00 0.00 1.52
3546 7801 5.115472 CGCGTCGTCTAGTTTTTAGTGTTTA 59.885 40.000 0.00 0.00 0.00 2.01
3547 7802 4.085415 CGCGTCGTCTAGTTTTTAGTGTTT 60.085 41.667 0.00 0.00 0.00 2.83
3548 7803 3.423206 CGCGTCGTCTAGTTTTTAGTGTT 59.577 43.478 0.00 0.00 0.00 3.32
3549 7804 2.975851 CGCGTCGTCTAGTTTTTAGTGT 59.024 45.455 0.00 0.00 0.00 3.55
3550 7805 2.222223 GCGCGTCGTCTAGTTTTTAGTG 60.222 50.000 8.43 0.00 0.00 2.74
3551 7806 1.981533 GCGCGTCGTCTAGTTTTTAGT 59.018 47.619 8.43 0.00 0.00 2.24
3552 7807 2.026507 CAGCGCGTCGTCTAGTTTTTAG 59.973 50.000 8.43 0.00 0.00 1.85
3553 7808 1.980844 CAGCGCGTCGTCTAGTTTTTA 59.019 47.619 8.43 0.00 0.00 1.52
3554 7809 0.782384 CAGCGCGTCGTCTAGTTTTT 59.218 50.000 8.43 0.00 0.00 1.94
3555 7810 1.615107 GCAGCGCGTCGTCTAGTTTT 61.615 55.000 8.43 0.00 0.00 2.43
3556 7811 2.087009 GCAGCGCGTCGTCTAGTTT 61.087 57.895 8.43 0.00 0.00 2.66
3557 7812 2.504244 GCAGCGCGTCGTCTAGTT 60.504 61.111 8.43 0.00 0.00 2.24
3558 7813 4.477975 GGCAGCGCGTCGTCTAGT 62.478 66.667 8.43 0.00 0.00 2.57
3614 7869 1.516386 CGTTGATCGACCTCACCGG 60.516 63.158 7.54 0.00 42.86 5.28
3615 7870 0.388134 AACGTTGATCGACCTCACCG 60.388 55.000 0.00 4.65 42.86 4.94
3616 7871 1.068474 CAACGTTGATCGACCTCACC 58.932 55.000 23.90 0.00 42.86 4.02
3617 7872 1.068474 CCAACGTTGATCGACCTCAC 58.932 55.000 29.35 0.00 42.86 3.51
3618 7873 0.669318 GCCAACGTTGATCGACCTCA 60.669 55.000 29.35 0.00 42.86 3.86
3619 7874 1.683790 CGCCAACGTTGATCGACCTC 61.684 60.000 29.35 6.75 42.86 3.85
3620 7875 1.736645 CGCCAACGTTGATCGACCT 60.737 57.895 29.35 0.00 42.86 3.85
3621 7876 2.776072 CGCCAACGTTGATCGACC 59.224 61.111 29.35 8.96 42.86 4.79
3622 7877 2.095843 GCGCCAACGTTGATCGAC 59.904 61.111 31.87 23.04 42.83 4.20
3623 7878 2.356433 TGCGCCAACGTTGATCGA 60.356 55.556 31.87 20.20 42.83 3.59
3624 7879 2.096406 CTGCGCCAACGTTGATCG 59.904 61.111 29.35 27.90 42.83 3.69
3625 7880 2.480555 CCTGCGCCAACGTTGATC 59.519 61.111 29.35 18.19 42.83 2.92
3626 7881 3.055719 CCCTGCGCCAACGTTGAT 61.056 61.111 29.35 0.00 42.83 2.57
3649 7904 4.636435 AACACGGCGTTCCCCTGG 62.636 66.667 11.19 0.00 29.27 4.45
3656 7911 2.660552 CGTCTGGAACACGGCGTT 60.661 61.111 11.19 0.00 41.86 4.84
3661 7916 4.657824 ACCGCCGTCTGGAACACG 62.658 66.667 0.00 0.00 37.49 4.49
3662 7917 2.781595 ATCACCGCCGTCTGGAACAC 62.782 60.000 0.00 0.00 37.49 3.32
3663 7918 2.579657 ATCACCGCCGTCTGGAACA 61.580 57.895 0.00 0.00 37.49 3.18
3664 7919 2.100631 CATCACCGCCGTCTGGAAC 61.101 63.158 0.00 0.00 37.49 3.62
3665 7920 2.264480 CATCACCGCCGTCTGGAA 59.736 61.111 0.00 0.00 37.49 3.53
3666 7921 2.994995 ACATCACCGCCGTCTGGA 60.995 61.111 0.00 0.00 37.49 3.86
3667 7922 2.509336 GACATCACCGCCGTCTGG 60.509 66.667 0.00 0.00 38.77 3.86
3668 7923 2.880879 CGACATCACCGCCGTCTG 60.881 66.667 0.00 0.00 0.00 3.51
3669 7924 4.129737 CCGACATCACCGCCGTCT 62.130 66.667 0.00 0.00 0.00 4.18
3674 7929 4.760047 ACAGCCCGACATCACCGC 62.760 66.667 0.00 0.00 0.00 5.68
3675 7930 2.815211 CACAGCCCGACATCACCG 60.815 66.667 0.00 0.00 0.00 4.94
3676 7931 3.127533 GCACAGCCCGACATCACC 61.128 66.667 0.00 0.00 0.00 4.02
3677 7932 3.127533 GGCACAGCCCGACATCAC 61.128 66.667 0.00 0.00 44.06 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.