Multiple sequence alignment - TraesCS7D01G483800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G483800 chr7D 100.000 4893 0 0 1 4893 593671309 593666417 0.000000e+00 9036.0
1 TraesCS7D01G483800 chr7D 87.917 720 30 18 3 670 71620642 71621356 0.000000e+00 795.0
2 TraesCS7D01G483800 chr7D 87.008 254 29 2 4603 4856 594024552 594024303 2.880000e-72 283.0
3 TraesCS7D01G483800 chr7D 87.008 254 29 3 4603 4856 594130567 594130816 2.880000e-72 283.0
4 TraesCS7D01G483800 chr7D 84.071 226 27 5 4624 4849 594062724 594062940 4.960000e-50 209.0
5 TraesCS7D01G483800 chr7D 83.628 226 28 6 4624 4849 594071774 594071990 2.310000e-48 204.0
6 TraesCS7D01G483800 chr7B 94.892 1801 84 7 2235 4027 667308656 667310456 0.000000e+00 2809.0
7 TraesCS7D01G483800 chr7B 87.996 1008 57 28 688 1676 667306951 667307913 0.000000e+00 1133.0
8 TraesCS7D01G483800 chr7B 91.078 269 19 4 4589 4856 667311282 667311546 4.660000e-95 359.0
9 TraesCS7D01G483800 chr7B 89.062 256 24 2 4605 4860 667320584 667320835 1.020000e-81 315.0
10 TraesCS7D01G483800 chr7B 88.119 202 16 5 4380 4575 667320310 667320509 2.940000e-57 233.0
11 TraesCS7D01G483800 chr7B 88.421 190 19 2 4408 4594 667311059 667311248 4.930000e-55 226.0
12 TraesCS7D01G483800 chr7B 96.324 136 5 0 4236 4371 667310622 667310757 1.770000e-54 224.0
13 TraesCS7D01G483800 chr7B 83.621 232 32 6 4628 4856 667103096 667103324 3.840000e-51 213.0
14 TraesCS7D01G483800 chr7B 84.500 200 30 1 4658 4856 667110475 667110276 3.860000e-46 196.0
15 TraesCS7D01G483800 chr7B 91.304 92 5 1 4024 4115 658512596 658512508 6.650000e-24 122.0
16 TraesCS7D01G483800 chr7B 92.045 88 4 1 4025 4112 107127483 107127399 2.390000e-23 121.0
17 TraesCS7D01G483800 chr7B 90.323 93 6 3 4025 4117 734366927 734366838 8.600000e-23 119.0
18 TraesCS7D01G483800 chr7A 94.108 1799 93 11 2235 4027 686235280 686233489 0.000000e+00 2723.0
19 TraesCS7D01G483800 chr7A 89.503 886 50 19 710 1582 686237178 686236323 0.000000e+00 1081.0
20 TraesCS7D01G483800 chr7A 92.810 306 17 4 4589 4893 686230394 686230093 5.810000e-119 438.0
21 TraesCS7D01G483800 chr7A 86.977 215 25 2 4380 4594 686230639 686230428 6.330000e-59 239.0
22 TraesCS7D01G483800 chr7A 94.286 140 7 1 4236 4375 686233296 686233158 3.840000e-51 213.0
23 TraesCS7D01G483800 chr7A 84.772 197 29 1 4658 4853 686519336 686519532 3.860000e-46 196.0
24 TraesCS7D01G483800 chr7A 87.662 154 19 0 4679 4832 686370543 686370696 3.890000e-41 180.0
25 TraesCS7D01G483800 chr7A 89.796 98 6 4 4022 4118 256227398 256227492 6.650000e-24 122.0
26 TraesCS7D01G483800 chr7A 89.216 102 5 6 4025 4126 581850908 581851003 6.650000e-24 122.0
27 TraesCS7D01G483800 chr5D 90.816 686 30 20 1 670 396426711 396426043 0.000000e+00 887.0
28 TraesCS7D01G483800 chr5D 95.745 423 17 1 1 422 482290262 482289840 0.000000e+00 680.0
29 TraesCS7D01G483800 chr5D 91.304 92 5 3 4021 4112 532592456 532592544 6.650000e-24 122.0
30 TraesCS7D01G483800 chr5D 91.111 90 5 3 4024 4113 419367927 419368013 8.600000e-23 119.0
31 TraesCS7D01G483800 chr1D 89.121 717 35 16 1 680 231456799 231456089 0.000000e+00 852.0
32 TraesCS7D01G483800 chr1D 88.968 698 34 7 1 670 208181207 208181889 0.000000e+00 822.0
33 TraesCS7D01G483800 chr1D 88.352 704 41 24 1 670 278526284 278525588 0.000000e+00 808.0
34 TraesCS7D01G483800 chr1D 87.879 99 9 3 4025 4123 211494754 211494659 4.000000e-21 113.0
35 TraesCS7D01G483800 chr1D 87.255 102 8 5 4027 4127 12067407 12067504 1.440000e-20 111.0
36 TraesCS7D01G483800 chr6A 88.576 674 58 16 1 668 84691705 84692365 0.000000e+00 800.0
37 TraesCS7D01G483800 chr6A 79.476 229 39 8 4627 4850 24068502 24068727 6.560000e-34 156.0
38 TraesCS7D01G483800 chr5A 87.749 702 47 23 2 668 601261255 601260558 0.000000e+00 784.0
39 TraesCS7D01G483800 chr5A 87.037 702 52 22 1 668 698731581 698732277 0.000000e+00 756.0
40 TraesCS7D01G483800 chr3A 87.394 706 37 16 1 670 623603669 623604358 0.000000e+00 763.0
41 TraesCS7D01G483800 chr3A 86.243 676 50 16 1 668 692984556 692985196 0.000000e+00 693.0
42 TraesCS7D01G483800 chrUn 97.619 420 9 1 1 419 21561717 21561298 0.000000e+00 719.0
43 TraesCS7D01G483800 chrUn 91.304 92 5 1 4024 4115 399203735 399203647 6.650000e-24 122.0
44 TraesCS7D01G483800 chrUn 89.362 94 6 2 4020 4113 349323557 349323646 1.110000e-21 115.0
45 TraesCS7D01G483800 chrUn 90.000 90 6 1 4023 4112 202630519 202630605 4.000000e-21 113.0
46 TraesCS7D01G483800 chrUn 89.773 88 6 3 4025 4112 8111534 8111450 5.180000e-20 110.0
47 TraesCS7D01G483800 chrUn 86.316 95 9 4 4021 4115 5551157 5551067 3.120000e-17 100.0
48 TraesCS7D01G483800 chrUn 86.667 90 9 3 4024 4113 27475954 27476040 4.030000e-16 97.1
49 TraesCS7D01G483800 chrUn 85.263 95 10 4 4020 4113 87109211 87109120 1.450000e-15 95.3
50 TraesCS7D01G483800 chrUn 87.059 85 8 1 4029 4113 225564034 225564115 5.210000e-15 93.5
51 TraesCS7D01G483800 chrUn 87.059 85 8 1 4029 4113 237460336 237460255 5.210000e-15 93.5
52 TraesCS7D01G483800 chrUn 85.714 91 8 3 4025 4113 40190570 40190483 1.880000e-14 91.6
53 TraesCS7D01G483800 chrUn 84.375 96 10 5 4028 4122 110322469 110322378 6.750000e-14 89.8
54 TraesCS7D01G483800 chr2A 85.673 684 78 16 1 668 86265975 86266654 0.000000e+00 702.0
55 TraesCS7D01G483800 chr2A 81.383 188 34 1 1284 1471 19694772 19694958 8.480000e-33 152.0
56 TraesCS7D01G483800 chr2A 90.526 95 5 3 4021 4115 754348745 754348655 6.650000e-24 122.0
57 TraesCS7D01G483800 chr6D 89.980 499 34 10 181 668 107534420 107534913 8.940000e-177 630.0
58 TraesCS7D01G483800 chr6D 92.222 90 4 1 4024 4113 28032440 28032526 1.850000e-24 124.0
59 TraesCS7D01G483800 chr4B 89.049 347 29 5 1045 1382 635619366 635619020 5.860000e-114 422.0
60 TraesCS7D01G483800 chr4B 94.904 157 8 0 1426 1582 635619021 635618865 3.780000e-61 246.0
61 TraesCS7D01G483800 chr4B 89.691 97 5 3 4025 4120 512752898 512752806 8.600000e-23 119.0
62 TraesCS7D01G483800 chr4B 90.909 88 5 3 4025 4112 483511808 483511724 1.110000e-21 115.0
63 TraesCS7D01G483800 chr4B 90.909 88 4 4 4025 4112 586248451 586248534 1.110000e-21 115.0
64 TraesCS7D01G483800 chr6B 87.784 352 33 2 1045 1387 45533050 45533400 2.120000e-108 403.0
65 TraesCS7D01G483800 chr6B 93.299 194 13 0 1383 1576 45538476 45538669 2.230000e-73 287.0
66 TraesCS7D01G483800 chr6B 92.135 89 6 1 4024 4112 705834286 705834199 1.850000e-24 124.0
67 TraesCS7D01G483800 chr2B 82.228 377 65 2 1204 1579 732609600 732609225 1.700000e-84 324.0
68 TraesCS7D01G483800 chr1A 92.174 230 11 6 442 670 516374431 516374654 7.900000e-83 318.0
69 TraesCS7D01G483800 chr1A 92.771 83 3 1 4024 4106 563757774 563757853 3.090000e-22 117.0
70 TraesCS7D01G483800 chr3D 87.698 252 24 5 419 668 451197570 451197324 2.230000e-73 287.0
71 TraesCS7D01G483800 chr3D 92.135 89 3 2 4025 4113 79601502 79601586 6.650000e-24 122.0
72 TraesCS7D01G483800 chr3D 92.135 89 4 1 4025 4113 400684027 400683942 6.650000e-24 122.0
73 TraesCS7D01G483800 chr4D 91.304 92 5 1 4024 4115 320593734 320593822 6.650000e-24 122.0
74 TraesCS7D01G483800 chr4D 89.130 92 7 2 4024 4115 497178615 497178527 1.440000e-20 111.0
75 TraesCS7D01G483800 chr4D 91.463 82 5 2 4025 4106 503516034 503515955 1.440000e-20 111.0
76 TraesCS7D01G483800 chr4D 88.764 89 7 3 4025 4113 182067423 182067338 6.700000e-19 106.0
77 TraesCS7D01G483800 chr4D 86.735 98 10 3 4022 4119 482367399 482367493 6.700000e-19 106.0
78 TraesCS7D01G483800 chr4D 86.000 100 11 3 4020 4119 22573409 22573313 2.410000e-18 104.0
79 TraesCS7D01G483800 chr5B 89.583 96 6 2 4025 4119 184285349 184285257 8.600000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G483800 chr7D 593666417 593671309 4892 True 9036.0 9036 100.0000 1 4893 1 chr7D.!!$R1 4892
1 TraesCS7D01G483800 chr7D 71620642 71621356 714 False 795.0 795 87.9170 3 670 1 chr7D.!!$F1 667
2 TraesCS7D01G483800 chr7B 667306951 667311546 4595 False 950.2 2809 91.7422 688 4856 5 chr7B.!!$F2 4168
3 TraesCS7D01G483800 chr7B 667320310 667320835 525 False 274.0 315 88.5905 4380 4860 2 chr7B.!!$F3 480
4 TraesCS7D01G483800 chr7A 686230093 686237178 7085 True 938.8 2723 91.5368 710 4893 5 chr7A.!!$R1 4183
5 TraesCS7D01G483800 chr5D 396426043 396426711 668 True 887.0 887 90.8160 1 670 1 chr5D.!!$R1 669
6 TraesCS7D01G483800 chr1D 231456089 231456799 710 True 852.0 852 89.1210 1 680 1 chr1D.!!$R2 679
7 TraesCS7D01G483800 chr1D 208181207 208181889 682 False 822.0 822 88.9680 1 670 1 chr1D.!!$F2 669
8 TraesCS7D01G483800 chr1D 278525588 278526284 696 True 808.0 808 88.3520 1 670 1 chr1D.!!$R3 669
9 TraesCS7D01G483800 chr6A 84691705 84692365 660 False 800.0 800 88.5760 1 668 1 chr6A.!!$F2 667
10 TraesCS7D01G483800 chr5A 601260558 601261255 697 True 784.0 784 87.7490 2 668 1 chr5A.!!$R1 666
11 TraesCS7D01G483800 chr5A 698731581 698732277 696 False 756.0 756 87.0370 1 668 1 chr5A.!!$F1 667
12 TraesCS7D01G483800 chr3A 623603669 623604358 689 False 763.0 763 87.3940 1 670 1 chr3A.!!$F1 669
13 TraesCS7D01G483800 chr3A 692984556 692985196 640 False 693.0 693 86.2430 1 668 1 chr3A.!!$F2 667
14 TraesCS7D01G483800 chr2A 86265975 86266654 679 False 702.0 702 85.6730 1 668 1 chr2A.!!$F2 667
15 TraesCS7D01G483800 chr4B 635618865 635619366 501 True 334.0 422 91.9765 1045 1582 2 chr4B.!!$R3 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 778 1.270625 CCCGTTGGAGTTGCTCTTACA 60.271 52.381 0.00 0.00 0.00 2.41 F
1623 1768 0.179045 GCGAATGCTATCCACACCCT 60.179 55.000 0.00 0.00 38.39 4.34 F
1823 2375 0.106894 CCTAGGGGACAATTCGCTCC 59.893 60.000 0.00 0.00 35.04 4.70 F
3088 3776 0.800012 TTATCGGTGCGTTGAAAGGC 59.200 50.000 0.88 0.88 40.04 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 2356 0.106894 GGAGCGAATTGTCCCCTAGG 59.893 60.0 0.06 0.06 0.00 3.02 R
3058 3746 0.108186 CACCGATAACAGCCTCTGCA 60.108 55.0 0.00 0.00 41.13 4.41 R
3337 4025 0.176680 CCAAGTCATCCGGGTCTCTG 59.823 60.0 0.00 0.00 0.00 3.35 R
4624 8011 0.105778 CTCTCCCCTTCCATCTTCGC 59.894 60.0 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
327 331 4.286320 AGCCGGCGGATCGACATC 62.286 66.667 33.44 9.23 32.52 3.06
671 778 1.270625 CCCGTTGGAGTTGCTCTTACA 60.271 52.381 0.00 0.00 0.00 2.41
674 781 3.502211 CCGTTGGAGTTGCTCTTACAATT 59.498 43.478 0.00 0.00 0.00 2.32
701 808 4.803098 ACAGAGGGAGTACATGTGTAAC 57.197 45.455 9.11 0.00 31.52 2.50
702 809 3.514309 ACAGAGGGAGTACATGTGTAACC 59.486 47.826 9.11 6.00 34.36 2.85
737 846 4.871933 TTTCTTGAATTTCTCCTTGGCC 57.128 40.909 0.00 0.00 0.00 5.36
738 847 3.814504 TCTTGAATTTCTCCTTGGCCT 57.185 42.857 3.32 0.00 0.00 5.19
742 851 5.476945 TCTTGAATTTCTCCTTGGCCTTTAC 59.523 40.000 3.32 0.00 0.00 2.01
745 854 6.180472 TGAATTTCTCCTTGGCCTTTACTAG 58.820 40.000 3.32 0.00 0.00 2.57
762 871 9.379791 CCTTTACTAGTAGTACAAGATTTTGGG 57.620 37.037 21.47 6.72 38.66 4.12
777 886 3.628832 TTTGGGGAATTTGGAGGAGTT 57.371 42.857 0.00 0.00 0.00 3.01
804 913 3.273788 AAGGGGCCTCCAGCTTTCG 62.274 63.158 0.00 0.00 43.05 3.46
817 927 3.166657 CAGCTTTCGCTTACTGAAATGC 58.833 45.455 0.00 0.00 46.47 3.56
818 928 3.077359 AGCTTTCGCTTACTGAAATGCT 58.923 40.909 6.59 6.59 46.47 3.79
819 929 3.120060 AGCTTTCGCTTACTGAAATGCTG 60.120 43.478 9.79 0.00 46.47 4.41
820 930 3.365364 GCTTTCGCTTACTGAAATGCTGT 60.365 43.478 0.00 0.00 35.01 4.40
821 931 3.811722 TTCGCTTACTGAAATGCTGTG 57.188 42.857 0.00 0.00 0.00 3.66
822 932 1.464608 TCGCTTACTGAAATGCTGTGC 59.535 47.619 0.00 0.00 0.00 4.57
823 933 1.466360 CGCTTACTGAAATGCTGTGCC 60.466 52.381 0.00 0.00 0.00 5.01
848 958 1.499049 GGACGACACCAAACAGTCTC 58.501 55.000 0.00 0.00 32.68 3.36
875 989 1.743252 CGAGGGAGCAAAGCTGTCC 60.743 63.158 0.00 0.00 39.88 4.02
1597 1742 1.891722 TACGCCCCTCCGTTTTCTCC 61.892 60.000 0.00 0.00 42.20 3.71
1598 1743 2.045242 GCCCCTCCGTTTTCTCCC 60.045 66.667 0.00 0.00 0.00 4.30
1600 1745 2.228480 CCCCTCCGTTTTCTCCCCA 61.228 63.158 0.00 0.00 0.00 4.96
1602 1747 1.375523 CCTCCGTTTTCTCCCCACG 60.376 63.158 0.00 0.00 0.00 4.94
1603 1748 1.669440 CTCCGTTTTCTCCCCACGA 59.331 57.895 0.00 0.00 35.93 4.35
1604 1749 0.389948 CTCCGTTTTCTCCCCACGAG 60.390 60.000 0.00 0.00 40.30 4.18
1605 1750 2.033194 CCGTTTTCTCCCCACGAGC 61.033 63.158 0.00 0.00 38.62 5.03
1606 1751 2.380410 CGTTTTCTCCCCACGAGCG 61.380 63.158 0.00 0.00 38.62 5.03
1608 1753 0.601841 GTTTTCTCCCCACGAGCGAA 60.602 55.000 0.00 0.00 38.62 4.70
1609 1754 0.323629 TTTTCTCCCCACGAGCGAAT 59.676 50.000 0.00 0.00 38.62 3.34
1610 1755 0.391130 TTTCTCCCCACGAGCGAATG 60.391 55.000 0.00 0.00 38.62 2.67
1611 1756 2.852495 TTCTCCCCACGAGCGAATGC 62.852 60.000 0.00 0.00 38.62 3.56
1622 1767 2.321213 GCGAATGCTATCCACACCC 58.679 57.895 0.00 0.00 38.39 4.61
1623 1768 0.179045 GCGAATGCTATCCACACCCT 60.179 55.000 0.00 0.00 38.39 4.34
1624 1769 1.070134 GCGAATGCTATCCACACCCTA 59.930 52.381 0.00 0.00 38.39 3.53
1625 1770 2.484770 GCGAATGCTATCCACACCCTAA 60.485 50.000 0.00 0.00 38.39 2.69
1626 1771 3.393800 CGAATGCTATCCACACCCTAAG 58.606 50.000 0.00 0.00 0.00 2.18
1627 1772 3.744660 GAATGCTATCCACACCCTAAGG 58.255 50.000 0.00 0.00 40.04 2.69
1628 1773 2.561209 TGCTATCCACACCCTAAGGA 57.439 50.000 0.00 0.00 36.73 3.36
1629 1774 2.116238 TGCTATCCACACCCTAAGGAC 58.884 52.381 0.00 0.00 36.73 3.85
1651 1801 3.255149 CGCGTAGGTAGATGGATAAGGTT 59.745 47.826 0.00 0.00 0.00 3.50
1653 1803 4.038883 GCGTAGGTAGATGGATAAGGTTGT 59.961 45.833 0.00 0.00 0.00 3.32
1669 1819 1.184322 TTGTTACCTACGGCCACGGA 61.184 55.000 2.24 0.00 46.48 4.69
1676 1826 2.278849 TACGGCCACGGAGAATTCA 58.721 52.632 8.44 0.00 46.48 2.57
1678 1828 1.375396 CGGCCACGGAGAATTCACA 60.375 57.895 8.44 0.00 36.18 3.58
1682 1998 2.808543 GGCCACGGAGAATTCACATATC 59.191 50.000 8.44 0.00 0.00 1.63
1690 2006 5.295292 CGGAGAATTCACATATCAAGCAGTT 59.705 40.000 8.44 0.00 0.00 3.16
1709 2025 6.918043 CAGTTATCTGCTTGCAAACTTTAC 57.082 37.500 0.00 0.00 34.79 2.01
1710 2026 5.858581 CAGTTATCTGCTTGCAAACTTTACC 59.141 40.000 0.00 0.00 34.79 2.85
1711 2027 5.534654 AGTTATCTGCTTGCAAACTTTACCA 59.465 36.000 0.00 0.00 0.00 3.25
1713 2029 4.040445 TCTGCTTGCAAACTTTACCAAC 57.960 40.909 0.00 0.00 0.00 3.77
1714 2030 3.445450 TCTGCTTGCAAACTTTACCAACA 59.555 39.130 0.00 0.00 0.00 3.33
1715 2031 4.099266 TCTGCTTGCAAACTTTACCAACAT 59.901 37.500 0.00 0.00 0.00 2.71
1716 2032 4.764172 TGCTTGCAAACTTTACCAACATT 58.236 34.783 0.00 0.00 0.00 2.71
1717 2033 5.181748 TGCTTGCAAACTTTACCAACATTT 58.818 33.333 0.00 0.00 0.00 2.32
1718 2034 5.064452 TGCTTGCAAACTTTACCAACATTTG 59.936 36.000 0.00 0.00 34.17 2.32
1719 2035 5.293079 GCTTGCAAACTTTACCAACATTTGA 59.707 36.000 0.00 0.00 33.08 2.69
1720 2036 6.654793 TTGCAAACTTTACCAACATTTGAC 57.345 33.333 0.00 0.00 33.08 3.18
1721 2037 5.971763 TGCAAACTTTACCAACATTTGACT 58.028 33.333 0.00 0.00 33.08 3.41
1722 2038 7.101652 TGCAAACTTTACCAACATTTGACTA 57.898 32.000 0.00 0.00 33.08 2.59
1723 2039 7.721402 TGCAAACTTTACCAACATTTGACTAT 58.279 30.769 0.00 0.00 33.08 2.12
1724 2040 7.865385 TGCAAACTTTACCAACATTTGACTATC 59.135 33.333 0.00 0.00 33.08 2.08
1725 2041 8.082242 GCAAACTTTACCAACATTTGACTATCT 58.918 33.333 0.00 0.00 33.08 1.98
1726 2042 9.612620 CAAACTTTACCAACATTTGACTATCTC 57.387 33.333 0.00 0.00 33.08 2.75
1727 2043 9.574516 AAACTTTACCAACATTTGACTATCTCT 57.425 29.630 0.00 0.00 0.00 3.10
1728 2044 9.574516 AACTTTACCAACATTTGACTATCTCTT 57.425 29.630 0.00 0.00 0.00 2.85
1732 2048 7.559590 ACCAACATTTGACTATCTCTTATGC 57.440 36.000 0.00 0.00 0.00 3.14
1733 2049 7.341805 ACCAACATTTGACTATCTCTTATGCT 58.658 34.615 0.00 0.00 0.00 3.79
1734 2050 7.497249 ACCAACATTTGACTATCTCTTATGCTC 59.503 37.037 0.00 0.00 0.00 4.26
1735 2051 7.041508 CCAACATTTGACTATCTCTTATGCTCC 60.042 40.741 0.00 0.00 0.00 4.70
1736 2052 7.129457 ACATTTGACTATCTCTTATGCTCCA 57.871 36.000 0.00 0.00 0.00 3.86
1737 2053 6.989169 ACATTTGACTATCTCTTATGCTCCAC 59.011 38.462 0.00 0.00 0.00 4.02
1746 2298 7.863901 ATCTCTTATGCTCCACCTATAAGTT 57.136 36.000 0.00 0.00 36.35 2.66
1751 2303 8.107095 TCTTATGCTCCACCTATAAGTTTGTTT 58.893 33.333 0.00 0.00 36.35 2.83
1754 2306 7.011499 TGCTCCACCTATAAGTTTGTTTCTA 57.989 36.000 0.00 0.00 0.00 2.10
1757 2309 9.609346 GCTCCACCTATAAGTTTGTTTCTATTA 57.391 33.333 0.00 0.00 0.00 0.98
1823 2375 0.106894 CCTAGGGGACAATTCGCTCC 59.893 60.000 0.00 0.00 35.04 4.70
1830 2382 0.940126 GACAATTCGCTCCATCGCAT 59.060 50.000 0.00 0.00 0.00 4.73
1838 2390 2.760650 TCGCTCCATCGCATAATCCTAT 59.239 45.455 0.00 0.00 0.00 2.57
1842 2394 5.121811 GCTCCATCGCATAATCCTATGATT 58.878 41.667 0.00 0.00 43.56 2.57
1844 2396 6.094603 GCTCCATCGCATAATCCTATGATTTT 59.905 38.462 0.00 0.00 41.44 1.82
1846 2398 8.044060 TCCATCGCATAATCCTATGATTTTTC 57.956 34.615 0.00 0.00 41.44 2.29
1848 2400 7.966753 CCATCGCATAATCCTATGATTTTTCTG 59.033 37.037 0.00 0.00 41.44 3.02
1849 2401 8.724229 CATCGCATAATCCTATGATTTTTCTGA 58.276 33.333 0.00 0.00 41.44 3.27
1850 2402 8.853077 TCGCATAATCCTATGATTTTTCTGAT 57.147 30.769 0.00 0.00 41.44 2.90
1852 2404 8.724229 CGCATAATCCTATGATTTTTCTGATCA 58.276 33.333 0.00 0.00 41.44 2.92
1857 2409 7.885009 TCCTATGATTTTTCTGATCAATGCA 57.115 32.000 0.00 0.00 37.11 3.96
1858 2410 8.473358 TCCTATGATTTTTCTGATCAATGCAT 57.527 30.769 0.00 0.00 37.11 3.96
1859 2411 9.577222 TCCTATGATTTTTCTGATCAATGCATA 57.423 29.630 0.00 0.00 37.11 3.14
1864 2416 9.308318 TGATTTTTCTGATCAATGCATAATGTG 57.692 29.630 0.00 0.00 30.96 3.21
1865 2417 8.657074 ATTTTTCTGATCAATGCATAATGTGG 57.343 30.769 0.00 0.00 0.00 4.17
1866 2418 7.407393 TTTTCTGATCAATGCATAATGTGGA 57.593 32.000 0.00 0.00 0.00 4.02
1867 2419 6.381481 TTCTGATCAATGCATAATGTGGAC 57.619 37.500 0.00 0.00 0.00 4.02
1868 2420 5.687780 TCTGATCAATGCATAATGTGGACT 58.312 37.500 0.00 0.00 0.00 3.85
1869 2421 6.829849 TCTGATCAATGCATAATGTGGACTA 58.170 36.000 0.00 0.00 0.00 2.59
1870 2422 7.281841 TCTGATCAATGCATAATGTGGACTAA 58.718 34.615 0.00 0.00 0.00 2.24
1871 2423 7.940688 TCTGATCAATGCATAATGTGGACTAAT 59.059 33.333 0.00 0.00 0.00 1.73
1872 2424 8.467963 TGATCAATGCATAATGTGGACTAATT 57.532 30.769 0.00 0.00 0.00 1.40
1873 2425 9.571816 TGATCAATGCATAATGTGGACTAATTA 57.428 29.630 0.00 0.00 0.00 1.40
1908 2463 4.245660 TCATGTGCAAGTTAGTAGCTGTC 58.754 43.478 0.00 0.00 0.00 3.51
1911 2466 4.447290 TGTGCAAGTTAGTAGCTGTCAAA 58.553 39.130 0.00 0.00 0.00 2.69
1918 2473 7.044052 GCAAGTTAGTAGCTGTCAAAACTTTTG 60.044 37.037 7.80 7.80 35.57 2.44
1923 2478 7.582667 AGTAGCTGTCAAAACTTTTGGTATT 57.417 32.000 13.20 1.18 0.00 1.89
1928 2483 7.277760 AGCTGTCAAAACTTTTGGTATTGAAAC 59.722 33.333 13.20 3.74 32.36 2.78
1933 2488 8.242053 TCAAAACTTTTGGTATTGAAACGTGTA 58.758 29.630 13.20 0.00 0.00 2.90
1939 2494 6.533819 TTGGTATTGAAACGTGTACTCTTG 57.466 37.500 0.00 0.00 0.00 3.02
1940 2495 5.603596 TGGTATTGAAACGTGTACTCTTGT 58.396 37.500 0.00 0.00 0.00 3.16
1941 2496 6.747125 TGGTATTGAAACGTGTACTCTTGTA 58.253 36.000 0.00 0.00 0.00 2.41
1942 2497 7.380536 TGGTATTGAAACGTGTACTCTTGTAT 58.619 34.615 0.00 0.00 0.00 2.29
1967 2522 7.472334 AGTTAATTTTCAGCAGTGAATCCAT 57.528 32.000 0.00 0.00 42.41 3.41
1969 2524 7.816031 AGTTAATTTTCAGCAGTGAATCCATTG 59.184 33.333 0.00 0.00 42.41 2.82
1970 2525 5.988310 ATTTTCAGCAGTGAATCCATTGA 57.012 34.783 0.00 0.00 42.41 2.57
1972 2527 5.988310 TTTCAGCAGTGAATCCATTGAAT 57.012 34.783 0.00 0.00 42.41 2.57
1973 2528 7.465353 TTTTCAGCAGTGAATCCATTGAATA 57.535 32.000 0.00 0.00 42.41 1.75
1974 2529 6.441093 TTCAGCAGTGAATCCATTGAATAC 57.559 37.500 0.00 0.00 37.79 1.89
1975 2530 5.748402 TCAGCAGTGAATCCATTGAATACT 58.252 37.500 0.00 0.00 32.42 2.12
1977 2532 6.094464 TCAGCAGTGAATCCATTGAATACTTG 59.906 38.462 0.00 0.00 32.42 3.16
1978 2533 5.948162 AGCAGTGAATCCATTGAATACTTGT 59.052 36.000 0.00 0.00 32.42 3.16
1979 2534 6.094603 AGCAGTGAATCCATTGAATACTTGTC 59.905 38.462 0.00 0.00 32.42 3.18
1980 2535 6.094603 GCAGTGAATCCATTGAATACTTGTCT 59.905 38.462 0.00 0.00 32.42 3.41
1981 2536 7.678218 GCAGTGAATCCATTGAATACTTGTCTC 60.678 40.741 0.00 0.00 32.42 3.36
1988 2545 9.753674 ATCCATTGAATACTTGTCTCCTTTTAA 57.246 29.630 0.00 0.00 0.00 1.52
1990 2547 9.626045 CCATTGAATACTTGTCTCCTTTTAAAC 57.374 33.333 0.00 0.00 0.00 2.01
2014 2571 7.433680 ACTTTACCAACATTTTGATCCTGTTC 58.566 34.615 0.00 0.00 34.24 3.18
2017 2574 3.244976 CAACATTTTGATCCTGTTCGGC 58.755 45.455 0.00 0.00 34.24 5.54
2030 2587 1.217882 GTTCGGCGATCCACCTAATG 58.782 55.000 11.76 0.00 0.00 1.90
2043 2604 7.065803 CGATCCACCTAATGATTTTACACTGTT 59.934 37.037 0.00 0.00 0.00 3.16
2048 2609 6.942576 ACCTAATGATTTTACACTGTTGCTCT 59.057 34.615 0.00 0.00 0.00 4.09
2049 2610 8.100791 ACCTAATGATTTTACACTGTTGCTCTA 58.899 33.333 0.00 0.00 0.00 2.43
2052 2613 8.565896 AATGATTTTACACTGTTGCTCTATGA 57.434 30.769 0.00 0.00 0.00 2.15
2054 2621 8.389779 TGATTTTACACTGTTGCTCTATGAAA 57.610 30.769 0.00 0.00 0.00 2.69
2062 2629 9.265901 ACACTGTTGCTCTATGAAATATATGAC 57.734 33.333 0.00 0.00 0.00 3.06
2064 2631 9.486497 ACTGTTGCTCTATGAAATATATGACTG 57.514 33.333 0.00 0.00 0.00 3.51
2114 2695 9.231297 TGCTAGCTTGAATTAGTAAACTGAAAT 57.769 29.630 17.23 0.00 0.00 2.17
2144 2734 8.509690 ACACTATGCACATCATATTGAATTAGC 58.490 33.333 8.57 0.00 39.38 3.09
2148 2738 6.731164 TGCACATCATATTGAATTAGCACAG 58.269 36.000 0.00 0.00 0.00 3.66
2166 2756 5.008415 AGCACAGTGAAATTGAAGACTGAAG 59.992 40.000 4.15 0.00 38.49 3.02
2181 2771 8.721478 TGAAGACTGAAGTACATAAATTTGAGC 58.279 33.333 0.00 0.00 0.00 4.26
2184 2774 7.119846 AGACTGAAGTACATAAATTTGAGCCAC 59.880 37.037 0.00 0.00 0.00 5.01
2194 2785 1.180907 TTTGAGCCACTGTGTGCAAA 58.819 45.000 18.81 15.66 31.34 3.68
2195 2786 1.180907 TTGAGCCACTGTGTGCAAAA 58.819 45.000 18.81 11.71 31.34 2.44
2225 2823 9.736023 AGAGTAATTGTTTTGTTCAGAACATTC 57.264 29.630 16.89 10.48 41.79 2.67
2230 2828 7.990541 TTGTTTTGTTCAGAACATTCATCAG 57.009 32.000 16.89 0.00 41.79 2.90
2242 2922 7.590322 CAGAACATTCATCAGCATTGCTAATAC 59.410 37.037 11.55 3.59 36.40 1.89
2246 2926 7.067859 ACATTCATCAGCATTGCTAATACAGTT 59.932 33.333 11.55 0.00 36.40 3.16
2308 2989 5.448632 CGTAGCAAATATGTTGGAGTTTCCC 60.449 44.000 0.00 0.00 35.03 3.97
2349 3030 2.525105 TTATGGGCTTTGGGAAGGTC 57.475 50.000 0.00 0.00 33.34 3.85
2508 3189 4.828829 TCATATCACTGCATATGCCTCTG 58.171 43.478 24.54 15.85 41.18 3.35
2568 3249 4.223320 TGCAAAAATGACGAAAGGAGTC 57.777 40.909 0.00 0.00 38.98 3.36
2752 3434 7.633789 AGTTATGCCATTATCTTGGGTATAGG 58.366 38.462 0.00 0.00 37.24 2.57
2753 3435 7.239773 AGTTATGCCATTATCTTGGGTATAGGT 59.760 37.037 0.00 0.00 37.24 3.08
2754 3436 5.499004 TGCCATTATCTTGGGTATAGGTC 57.501 43.478 0.00 0.00 37.24 3.85
2755 3437 5.162637 TGCCATTATCTTGGGTATAGGTCT 58.837 41.667 0.00 0.00 37.24 3.85
2781 3466 8.703604 TTTAGCATAGACAGTACACATTTCTC 57.296 34.615 0.00 0.00 0.00 2.87
2833 3520 2.029918 GGCCTTTTTCTGATTGCTTCGT 60.030 45.455 0.00 0.00 0.00 3.85
2860 3547 1.969589 TCAGGCAGCACTCGACGTA 60.970 57.895 0.00 0.00 0.00 3.57
2986 3673 2.686558 TGTTTTGCAACGATCTCTGC 57.313 45.000 0.00 8.53 39.09 4.26
2994 3681 2.079158 CAACGATCTCTGCACCACATT 58.921 47.619 0.00 0.00 0.00 2.71
2995 3682 2.015736 ACGATCTCTGCACCACATTC 57.984 50.000 0.00 0.00 0.00 2.67
3000 3687 1.085091 CTCTGCACCACATTCTGCTC 58.915 55.000 0.00 0.00 34.29 4.26
3022 3709 4.081087 TCGCTTATCCTCTTAACTTTGCCT 60.081 41.667 0.00 0.00 0.00 4.75
3024 3711 4.944317 GCTTATCCTCTTAACTTTGCCTGT 59.056 41.667 0.00 0.00 0.00 4.00
3088 3776 0.800012 TTATCGGTGCGTTGAAAGGC 59.200 50.000 0.88 0.88 40.04 4.35
3248 3936 2.674177 GCCGAGTTATCCCCATATGTCG 60.674 54.545 1.24 1.79 0.00 4.35
3289 3977 3.470567 CTCGCCGTGCAACTCGTC 61.471 66.667 0.00 0.00 33.37 4.20
3337 4025 3.126831 CAAGATTGTCTACTCATCGGCC 58.873 50.000 0.00 0.00 0.00 6.13
3375 4063 0.721718 GACACAAGAATTCTCCGCGG 59.278 55.000 22.12 22.12 0.00 6.46
3385 4073 4.758251 CTCCGCGGCATGGTCACA 62.758 66.667 23.51 0.00 0.00 3.58
3436 4124 4.377635 GCATTTGTCAACATTGTCAATGCC 60.378 41.667 22.79 10.67 42.69 4.40
3484 4172 2.257894 CGCATAATCGAGGAGCAGATC 58.742 52.381 0.00 0.00 0.00 2.75
3723 4411 0.552848 ATCATCGGCAAGGTGGGATT 59.447 50.000 0.00 0.00 0.00 3.01
4027 4716 2.962421 GGAGAAGCTGCTGGTAGATACT 59.038 50.000 0.00 0.00 0.00 2.12
4028 4717 3.005367 GGAGAAGCTGCTGGTAGATACTC 59.995 52.174 0.00 2.95 0.00 2.59
4029 4718 2.962421 AGAAGCTGCTGGTAGATACTCC 59.038 50.000 1.35 0.00 0.00 3.85
4030 4719 1.710816 AGCTGCTGGTAGATACTCCC 58.289 55.000 0.00 0.00 0.00 4.30
4031 4720 1.219213 AGCTGCTGGTAGATACTCCCT 59.781 52.381 0.00 0.00 0.00 4.20
4032 4721 1.616374 GCTGCTGGTAGATACTCCCTC 59.384 57.143 0.00 0.00 0.00 4.30
4033 4722 2.243810 CTGCTGGTAGATACTCCCTCC 58.756 57.143 0.00 0.00 0.00 4.30
4034 4723 1.249407 GCTGGTAGATACTCCCTCCG 58.751 60.000 0.00 0.00 0.00 4.63
4035 4724 1.479021 GCTGGTAGATACTCCCTCCGT 60.479 57.143 0.00 0.00 0.00 4.69
4036 4725 2.224719 GCTGGTAGATACTCCCTCCGTA 60.225 54.545 0.00 0.00 0.00 4.02
4037 4726 3.749954 GCTGGTAGATACTCCCTCCGTAA 60.750 52.174 0.00 0.00 0.00 3.18
4038 4727 4.467769 CTGGTAGATACTCCCTCCGTAAA 58.532 47.826 0.00 0.00 0.00 2.01
4039 4728 4.467769 TGGTAGATACTCCCTCCGTAAAG 58.532 47.826 0.00 0.00 0.00 1.85
4040 4729 4.166725 TGGTAGATACTCCCTCCGTAAAGA 59.833 45.833 0.00 0.00 0.00 2.52
4041 4730 5.136105 GGTAGATACTCCCTCCGTAAAGAA 58.864 45.833 0.00 0.00 0.00 2.52
4042 4731 5.595952 GGTAGATACTCCCTCCGTAAAGAAA 59.404 44.000 0.00 0.00 0.00 2.52
4043 4732 6.267242 GGTAGATACTCCCTCCGTAAAGAAAT 59.733 42.308 0.00 0.00 0.00 2.17
4044 4733 7.449704 GGTAGATACTCCCTCCGTAAAGAAATA 59.550 40.741 0.00 0.00 0.00 1.40
4045 4734 9.022884 GTAGATACTCCCTCCGTAAAGAAATAT 57.977 37.037 0.00 0.00 0.00 1.28
4047 4736 9.597681 AGATACTCCCTCCGTAAAGAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
4054 4743 9.152595 CCCTCCGTAAAGAAATATAATAAGAGC 57.847 37.037 0.00 0.00 0.00 4.09
4055 4744 9.706691 CCTCCGTAAAGAAATATAATAAGAGCA 57.293 33.333 0.00 0.00 0.00 4.26
4085 4774 6.098017 ATCACTACTTTAGTGGTCTAAACGC 58.902 40.000 12.33 0.00 46.78 4.84
4086 4775 5.718724 ACTACTTTAGTGGTCTAAACGCT 57.281 39.130 0.00 0.00 40.05 5.07
4087 4776 5.707931 ACTACTTTAGTGGTCTAAACGCTC 58.292 41.667 0.00 0.00 40.05 5.03
4088 4777 4.868314 ACTTTAGTGGTCTAAACGCTCT 57.132 40.909 0.00 0.00 40.05 4.09
4089 4778 5.211174 ACTTTAGTGGTCTAAACGCTCTT 57.789 39.130 0.00 0.00 40.05 2.85
4090 4779 6.336842 ACTTTAGTGGTCTAAACGCTCTTA 57.663 37.500 0.00 0.00 40.05 2.10
4091 4780 6.932947 ACTTTAGTGGTCTAAACGCTCTTAT 58.067 36.000 0.00 0.00 40.05 1.73
4092 4781 8.059798 ACTTTAGTGGTCTAAACGCTCTTATA 57.940 34.615 0.00 0.00 40.05 0.98
4093 4782 8.693625 ACTTTAGTGGTCTAAACGCTCTTATAT 58.306 33.333 0.00 0.00 40.05 0.86
4094 4783 9.530633 CTTTAGTGGTCTAAACGCTCTTATATT 57.469 33.333 0.00 0.00 40.05 1.28
4095 4784 9.880157 TTTAGTGGTCTAAACGCTCTTATATTT 57.120 29.630 0.00 0.00 40.05 1.40
4125 4814 6.092944 ACAGAGAGAGTACATCTTACGAACAG 59.907 42.308 0.00 0.00 38.84 3.16
4133 4822 2.073117 TCTTACGAACAGATGCGCAA 57.927 45.000 17.11 0.00 0.00 4.85
4141 4830 3.504863 GAACAGATGCGCAAAATGTGAT 58.495 40.909 17.11 0.71 0.00 3.06
4145 4834 0.460635 ATGCGCAAAATGTGATGCCC 60.461 50.000 17.11 0.00 39.39 5.36
4146 4835 1.079956 GCGCAAAATGTGATGCCCA 60.080 52.632 0.30 0.00 39.39 5.36
4203 4892 3.685139 TCTTACTGTTGCTGCTAGCTT 57.315 42.857 17.23 0.00 42.97 3.74
4211 4914 3.873361 TGTTGCTGCTAGCTTGTATGATC 59.127 43.478 17.23 0.00 42.97 2.92
4218 4921 4.061596 GCTAGCTTGTATGATCCCTTCAC 58.938 47.826 7.70 0.00 37.11 3.18
4270 5029 9.361315 CTGAAACAAATTGCATGATCTGATAAA 57.639 29.630 0.00 0.00 0.00 1.40
4305 5064 8.763601 AGTAGGCTCAGTTTCATTCTATTTAGT 58.236 33.333 0.00 0.00 0.00 2.24
4359 5118 2.071540 AGACATCACTGCATTCGTGTG 58.928 47.619 4.68 0.91 34.14 3.82
4361 5120 2.221169 ACATCACTGCATTCGTGTGTT 58.779 42.857 4.68 0.00 34.14 3.32
4371 5130 1.774639 TTCGTGTGTTAGCGTTCTCC 58.225 50.000 0.00 0.00 0.00 3.71
4372 5131 0.386352 TCGTGTGTTAGCGTTCTCCG 60.386 55.000 0.00 0.00 40.40 4.63
4396 7704 1.472201 GCATCTCCACTCGCATCAAGA 60.472 52.381 0.00 0.00 0.00 3.02
4404 7712 2.816958 CGCATCAAGAGTGCCGCT 60.817 61.111 0.00 0.00 39.39 5.52
4405 7713 1.519234 CGCATCAAGAGTGCCGCTA 60.519 57.895 0.00 0.00 39.39 4.26
4423 7742 2.593257 CTACCGGACACGAAGAAGAAC 58.407 52.381 9.46 0.00 44.60 3.01
4429 7748 3.057734 GGACACGAAGAAGAACGACAAT 58.942 45.455 0.00 0.00 0.00 2.71
4433 7752 6.211664 ACACGAAGAAGAACGACAATAAAG 57.788 37.500 0.00 0.00 0.00 1.85
4441 7760 7.797819 AGAAGAACGACAATAAAGTTGATGAC 58.202 34.615 0.00 0.00 0.00 3.06
4470 7789 3.074412 AGGAAATTTGACTGTTCGCGAT 58.926 40.909 10.88 0.00 0.00 4.58
4545 7882 6.323225 ACTCTATGCCAGGTAAGTAAACGTAT 59.677 38.462 0.00 0.00 0.00 3.06
4546 7883 7.503566 ACTCTATGCCAGGTAAGTAAACGTATA 59.496 37.037 0.00 0.00 0.00 1.47
4578 7922 4.042435 CCTAAACCCTCCTGTTTCTTACCA 59.958 45.833 0.00 0.00 39.15 3.25
4581 7925 2.372172 ACCCTCCTGTTTCTTACCACAG 59.628 50.000 0.00 0.00 40.23 3.66
4594 7938 5.272402 TCTTACCACAGATTCTCATCCTCA 58.728 41.667 0.00 0.00 0.00 3.86
4595 7939 5.721480 TCTTACCACAGATTCTCATCCTCAA 59.279 40.000 0.00 0.00 0.00 3.02
4596 7940 4.213564 ACCACAGATTCTCATCCTCAAC 57.786 45.455 0.00 0.00 0.00 3.18
4597 7941 3.584406 ACCACAGATTCTCATCCTCAACA 59.416 43.478 0.00 0.00 0.00 3.33
4598 7942 4.190001 CCACAGATTCTCATCCTCAACAG 58.810 47.826 0.00 0.00 0.00 3.16
4599 7943 4.190001 CACAGATTCTCATCCTCAACAGG 58.810 47.826 0.00 0.00 42.01 4.00
4606 7993 2.606519 TCCTCAACAGGACCCCCG 60.607 66.667 0.00 0.00 44.75 5.73
4622 8009 1.513158 CCGAACCACATCGAGAGCT 59.487 57.895 0.00 0.00 45.48 4.09
4623 8010 0.738975 CCGAACCACATCGAGAGCTA 59.261 55.000 0.00 0.00 45.48 3.32
4624 8011 1.268794 CCGAACCACATCGAGAGCTAG 60.269 57.143 0.00 0.00 45.48 3.42
4625 8012 1.846541 GAACCACATCGAGAGCTAGC 58.153 55.000 6.62 6.62 0.00 3.42
4626 8013 0.101399 AACCACATCGAGAGCTAGCG 59.899 55.000 9.55 1.53 0.00 4.26
4627 8014 0.748367 ACCACATCGAGAGCTAGCGA 60.748 55.000 9.55 12.08 41.14 4.93
4689 8076 3.402691 CTCGGCAGTGCTCGACGAT 62.403 63.158 20.17 0.00 32.75 3.73
4822 8209 4.070552 GCTTCGGCGACCTCCACT 62.071 66.667 10.16 0.00 0.00 4.00
4886 8273 2.897350 CGCCGAGAAGCAATCCCC 60.897 66.667 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
598 702 2.855880 TTATCCGTTTGGGTCGGCCG 62.856 60.000 22.12 22.12 46.49 6.13
599 703 0.677414 TTTATCCGTTTGGGTCGGCC 60.677 55.000 0.00 0.00 46.49 6.13
678 785 5.186409 GGTTACACATGTACTCCCTCTGTAA 59.814 44.000 0.00 0.00 0.00 2.41
680 787 3.514309 GGTTACACATGTACTCCCTCTGT 59.486 47.826 0.00 0.00 0.00 3.41
681 788 3.769844 AGGTTACACATGTACTCCCTCTG 59.230 47.826 0.00 0.00 0.00 3.35
682 789 4.062490 AGGTTACACATGTACTCCCTCT 57.938 45.455 0.00 0.00 0.00 3.69
683 790 5.363005 ACATAGGTTACACATGTACTCCCTC 59.637 44.000 0.00 0.00 31.26 4.30
684 791 5.278061 ACATAGGTTACACATGTACTCCCT 58.722 41.667 0.00 4.82 31.26 4.20
685 792 5.128171 TGACATAGGTTACACATGTACTCCC 59.872 44.000 0.00 0.00 33.16 4.30
686 793 6.216801 TGACATAGGTTACACATGTACTCC 57.783 41.667 0.00 0.00 33.16 3.85
719 826 4.879197 AAAGGCCAAGGAGAAATTCAAG 57.121 40.909 5.01 0.00 0.00 3.02
732 841 7.729124 ATCTTGTACTACTAGTAAAGGCCAA 57.271 36.000 5.01 2.42 31.62 4.52
737 846 9.379791 CCCCAAAATCTTGTACTACTAGTAAAG 57.620 37.037 3.76 5.03 31.62 1.85
738 847 9.103582 TCCCCAAAATCTTGTACTACTAGTAAA 57.896 33.333 3.76 0.00 31.62 2.01
742 851 9.462606 AAATTCCCCAAAATCTTGTACTACTAG 57.537 33.333 0.00 0.00 0.00 2.57
745 854 7.177744 TCCAAATTCCCCAAAATCTTGTACTAC 59.822 37.037 0.00 0.00 0.00 2.73
777 886 1.613630 GAGGCCCCTTGTCAGAGGA 60.614 63.158 0.00 0.00 39.25 3.71
804 913 1.815003 AGGCACAGCATTTCAGTAAGC 59.185 47.619 0.00 0.00 0.00 3.09
805 914 2.816087 ACAGGCACAGCATTTCAGTAAG 59.184 45.455 0.00 0.00 0.00 2.34
817 927 4.662961 TCGTCCGCACAGGCACAG 62.663 66.667 0.00 0.00 41.24 3.66
818 928 4.961511 GTCGTCCGCACAGGCACA 62.962 66.667 0.00 0.00 41.24 4.57
819 929 4.961511 TGTCGTCCGCACAGGCAC 62.962 66.667 0.00 0.00 41.24 5.01
820 930 4.961511 GTGTCGTCCGCACAGGCA 62.962 66.667 8.61 0.00 41.24 4.75
822 932 3.800685 TTGGTGTCGTCCGCACAGG 62.801 63.158 13.36 0.00 38.51 4.00
823 933 1.885388 TTTGGTGTCGTCCGCACAG 60.885 57.895 13.36 0.00 38.51 3.66
848 958 0.465705 TTGCTCCCTCGCTTATCTGG 59.534 55.000 0.00 0.00 0.00 3.86
989 1109 1.229428 CAATGCCATGGCGTAGGTAG 58.771 55.000 31.35 14.92 45.51 3.18
990 1110 0.179032 CCAATGCCATGGCGTAGGTA 60.179 55.000 31.35 13.53 45.51 3.08
991 1111 1.453745 CCAATGCCATGGCGTAGGT 60.454 57.895 31.35 13.97 45.51 3.08
992 1112 3.435590 CCAATGCCATGGCGTAGG 58.564 61.111 31.35 26.02 45.51 3.18
1103 1226 3.692406 GAAGGAGACGGCGGTGGT 61.692 66.667 13.24 0.00 0.00 4.16
1266 1398 2.429571 TACGCGCAGTCCACGTTC 60.430 61.111 5.73 0.00 40.99 3.95
1604 1749 0.179045 AGGGTGTGGATAGCATTCGC 60.179 55.000 0.00 0.00 38.99 4.70
1605 1750 3.393800 CTTAGGGTGTGGATAGCATTCG 58.606 50.000 0.00 0.00 0.00 3.34
1606 1751 3.391296 TCCTTAGGGTGTGGATAGCATTC 59.609 47.826 0.00 0.00 0.00 2.67
1608 1753 2.706190 GTCCTTAGGGTGTGGATAGCAT 59.294 50.000 0.00 0.00 32.03 3.79
1609 1754 2.116238 GTCCTTAGGGTGTGGATAGCA 58.884 52.381 0.00 0.00 32.03 3.49
1610 1755 1.068741 CGTCCTTAGGGTGTGGATAGC 59.931 57.143 0.00 0.00 32.03 2.97
1611 1756 1.068741 GCGTCCTTAGGGTGTGGATAG 59.931 57.143 0.00 0.00 32.03 2.08
1612 1757 1.117150 GCGTCCTTAGGGTGTGGATA 58.883 55.000 0.00 0.00 32.03 2.59
1613 1758 1.905512 GCGTCCTTAGGGTGTGGAT 59.094 57.895 0.00 0.00 32.03 3.41
1614 1759 2.642254 CGCGTCCTTAGGGTGTGGA 61.642 63.158 0.00 0.00 0.00 4.02
1615 1760 1.597797 TACGCGTCCTTAGGGTGTGG 61.598 60.000 18.63 0.00 36.22 4.17
1616 1761 0.179145 CTACGCGTCCTTAGGGTGTG 60.179 60.000 18.63 0.42 36.22 3.82
1617 1762 1.318158 CCTACGCGTCCTTAGGGTGT 61.318 60.000 18.63 0.00 36.22 4.16
1618 1763 1.318158 ACCTACGCGTCCTTAGGGTG 61.318 60.000 25.33 5.56 37.30 4.61
1619 1764 0.255890 TACCTACGCGTCCTTAGGGT 59.744 55.000 25.33 20.45 37.30 4.34
1620 1765 0.950116 CTACCTACGCGTCCTTAGGG 59.050 60.000 25.33 16.68 37.30 3.53
1621 1766 1.959042 TCTACCTACGCGTCCTTAGG 58.041 55.000 18.63 20.37 38.56 2.69
1622 1767 2.225963 CCATCTACCTACGCGTCCTTAG 59.774 54.545 18.63 14.53 0.00 2.18
1623 1768 2.158769 TCCATCTACCTACGCGTCCTTA 60.159 50.000 18.63 4.04 0.00 2.69
1624 1769 1.030457 CCATCTACCTACGCGTCCTT 58.970 55.000 18.63 2.80 0.00 3.36
1625 1770 0.182061 TCCATCTACCTACGCGTCCT 59.818 55.000 18.63 0.91 0.00 3.85
1626 1771 1.245732 ATCCATCTACCTACGCGTCC 58.754 55.000 18.63 0.00 0.00 4.79
1627 1772 3.119919 CCTTATCCATCTACCTACGCGTC 60.120 52.174 18.63 0.00 0.00 5.19
1628 1773 2.818432 CCTTATCCATCTACCTACGCGT 59.182 50.000 19.17 19.17 0.00 6.01
1629 1774 2.818432 ACCTTATCCATCTACCTACGCG 59.182 50.000 3.53 3.53 0.00 6.01
1669 1819 9.053840 CAGATAACTGCTTGATATGTGAATTCT 57.946 33.333 7.05 0.00 37.33 2.40
1690 2006 5.300539 TGTTGGTAAAGTTTGCAAGCAGATA 59.699 36.000 16.04 2.70 0.00 1.98
1699 2015 8.082242 AGATAGTCAAATGTTGGTAAAGTTTGC 58.918 33.333 0.00 0.00 31.64 3.68
1706 2022 9.109393 GCATAAGAGATAGTCAAATGTTGGTAA 57.891 33.333 0.00 0.00 0.00 2.85
1707 2023 8.486210 AGCATAAGAGATAGTCAAATGTTGGTA 58.514 33.333 0.00 0.00 0.00 3.25
1708 2024 7.341805 AGCATAAGAGATAGTCAAATGTTGGT 58.658 34.615 0.00 0.00 0.00 3.67
1709 2025 7.041508 GGAGCATAAGAGATAGTCAAATGTTGG 60.042 40.741 0.00 0.00 0.00 3.77
1710 2026 7.496920 TGGAGCATAAGAGATAGTCAAATGTTG 59.503 37.037 0.00 0.00 0.00 3.33
1711 2027 7.497249 GTGGAGCATAAGAGATAGTCAAATGTT 59.503 37.037 0.00 0.00 0.00 2.71
1713 2029 6.426328 GGTGGAGCATAAGAGATAGTCAAATG 59.574 42.308 0.00 0.00 0.00 2.32
1714 2030 6.328672 AGGTGGAGCATAAGAGATAGTCAAAT 59.671 38.462 0.00 0.00 0.00 2.32
1715 2031 5.663106 AGGTGGAGCATAAGAGATAGTCAAA 59.337 40.000 0.00 0.00 0.00 2.69
1716 2032 5.211973 AGGTGGAGCATAAGAGATAGTCAA 58.788 41.667 0.00 0.00 0.00 3.18
1717 2033 4.809193 AGGTGGAGCATAAGAGATAGTCA 58.191 43.478 0.00 0.00 0.00 3.41
1718 2034 8.582657 TTATAGGTGGAGCATAAGAGATAGTC 57.417 38.462 0.00 0.00 0.00 2.59
1719 2035 8.174085 ACTTATAGGTGGAGCATAAGAGATAGT 58.826 37.037 7.39 0.00 36.29 2.12
1720 2036 8.588290 ACTTATAGGTGGAGCATAAGAGATAG 57.412 38.462 7.39 0.00 36.29 2.08
1721 2037 8.958060 AACTTATAGGTGGAGCATAAGAGATA 57.042 34.615 7.39 0.00 36.29 1.98
1722 2038 7.863901 AACTTATAGGTGGAGCATAAGAGAT 57.136 36.000 7.39 0.00 36.29 2.75
1723 2039 7.125811 ACAAACTTATAGGTGGAGCATAAGAGA 59.874 37.037 7.39 0.00 36.29 3.10
1724 2040 7.275920 ACAAACTTATAGGTGGAGCATAAGAG 58.724 38.462 7.39 1.39 36.29 2.85
1725 2041 7.195374 ACAAACTTATAGGTGGAGCATAAGA 57.805 36.000 7.39 0.00 36.29 2.10
1726 2042 7.865706 AACAAACTTATAGGTGGAGCATAAG 57.134 36.000 0.00 0.00 37.95 1.73
1727 2043 8.107095 AGAAACAAACTTATAGGTGGAGCATAA 58.893 33.333 0.00 0.00 0.00 1.90
1728 2044 7.630082 AGAAACAAACTTATAGGTGGAGCATA 58.370 34.615 0.00 0.00 0.00 3.14
1729 2045 6.485171 AGAAACAAACTTATAGGTGGAGCAT 58.515 36.000 0.00 0.00 0.00 3.79
1730 2046 5.876357 AGAAACAAACTTATAGGTGGAGCA 58.124 37.500 0.00 0.00 0.00 4.26
1731 2047 8.507524 AATAGAAACAAACTTATAGGTGGAGC 57.492 34.615 0.00 0.00 0.00 4.70
1786 2338 3.366052 AGGCTAGGTACCCACATTTTG 57.634 47.619 8.74 0.00 0.00 2.44
1803 2355 0.533085 GAGCGAATTGTCCCCTAGGC 60.533 60.000 2.05 0.00 0.00 3.93
1804 2356 0.106894 GGAGCGAATTGTCCCCTAGG 59.893 60.000 0.06 0.06 0.00 3.02
1805 2357 0.830648 TGGAGCGAATTGTCCCCTAG 59.169 55.000 0.00 0.00 31.04 3.02
1806 2358 1.416401 GATGGAGCGAATTGTCCCCTA 59.584 52.381 0.00 0.00 31.04 3.53
1807 2359 0.181350 GATGGAGCGAATTGTCCCCT 59.819 55.000 0.00 0.00 31.04 4.79
1812 2364 2.238942 TATGCGATGGAGCGAATTGT 57.761 45.000 0.00 0.00 40.67 2.71
1818 2370 2.654749 TAGGATTATGCGATGGAGCG 57.345 50.000 0.00 0.00 40.67 5.03
1823 2375 8.724229 TCAGAAAAATCATAGGATTATGCGATG 58.276 33.333 2.54 0.83 42.87 3.84
1838 2390 9.308318 CACATTATGCATTGATCAGAAAAATCA 57.692 29.630 3.54 0.00 0.00 2.57
1842 2394 7.123098 AGTCCACATTATGCATTGATCAGAAAA 59.877 33.333 3.54 0.00 0.00 2.29
1844 2396 6.124340 AGTCCACATTATGCATTGATCAGAA 58.876 36.000 3.54 0.00 0.00 3.02
1846 2398 7.500720 TTAGTCCACATTATGCATTGATCAG 57.499 36.000 3.54 0.00 0.00 2.90
1871 2423 9.013229 ACTTGCACATGAAGTAGATCAAATTAA 57.987 29.630 0.00 0.00 31.72 1.40
1872 2424 8.565896 ACTTGCACATGAAGTAGATCAAATTA 57.434 30.769 0.00 0.00 31.72 1.40
1873 2425 7.458409 ACTTGCACATGAAGTAGATCAAATT 57.542 32.000 0.00 0.00 31.72 1.82
1874 2426 7.458409 AACTTGCACATGAAGTAGATCAAAT 57.542 32.000 0.00 0.00 33.20 2.32
1875 2427 6.882610 AACTTGCACATGAAGTAGATCAAA 57.117 33.333 0.00 0.00 33.20 2.69
1876 2428 7.161404 ACTAACTTGCACATGAAGTAGATCAA 58.839 34.615 0.00 0.00 33.20 2.57
1877 2429 6.701340 ACTAACTTGCACATGAAGTAGATCA 58.299 36.000 0.00 0.00 33.20 2.92
1878 2430 7.043059 GCTACTAACTTGCACATGAAGTAGATC 60.043 40.741 19.13 0.00 37.98 2.75
1881 2433 6.035435 CAGCTACTAACTTGCACATGAAGTAG 59.965 42.308 0.00 13.93 38.50 2.57
1890 2442 5.007724 AGTTTTGACAGCTACTAACTTGCAC 59.992 40.000 0.00 0.00 0.00 4.57
1896 2448 6.792326 ACCAAAAGTTTTGACAGCTACTAAC 58.208 36.000 26.36 0.00 0.00 2.34
1908 2463 7.284518 ACACGTTTCAATACCAAAAGTTTTG 57.715 32.000 19.48 19.48 38.39 2.44
1911 2466 7.281549 AGAGTACACGTTTCAATACCAAAAGTT 59.718 33.333 0.00 0.00 0.00 2.66
1918 2473 7.823149 ATACAAGAGTACACGTTTCAATACC 57.177 36.000 0.00 0.00 31.96 2.73
1933 2488 9.726438 ACTGCTGAAAATTAACTATACAAGAGT 57.274 29.630 0.00 0.00 0.00 3.24
1939 2494 9.937175 GGATTCACTGCTGAAAATTAACTATAC 57.063 33.333 0.00 0.00 39.90 1.47
1940 2495 9.679661 TGGATTCACTGCTGAAAATTAACTATA 57.320 29.630 0.00 0.00 39.90 1.31
1941 2496 8.579850 TGGATTCACTGCTGAAAATTAACTAT 57.420 30.769 0.00 0.00 39.90 2.12
1942 2497 7.994425 TGGATTCACTGCTGAAAATTAACTA 57.006 32.000 0.00 0.00 39.90 2.24
1954 2509 5.948162 ACAAGTATTCAATGGATTCACTGCT 59.052 36.000 0.00 0.00 0.00 4.24
1955 2510 6.094603 AGACAAGTATTCAATGGATTCACTGC 59.905 38.462 0.00 0.00 0.00 4.40
1972 2527 9.683870 TTGGTAAAGTTTAAAAGGAGACAAGTA 57.316 29.630 0.00 0.00 0.00 2.24
1973 2528 8.464404 GTTGGTAAAGTTTAAAAGGAGACAAGT 58.536 33.333 0.00 0.00 0.00 3.16
1974 2529 8.463607 TGTTGGTAAAGTTTAAAAGGAGACAAG 58.536 33.333 0.00 0.00 0.00 3.16
1975 2530 8.350852 TGTTGGTAAAGTTTAAAAGGAGACAA 57.649 30.769 0.00 0.00 0.00 3.18
1977 2532 9.811995 AAATGTTGGTAAAGTTTAAAAGGAGAC 57.188 29.630 0.00 0.00 0.00 3.36
1988 2545 7.360113 ACAGGATCAAAATGTTGGTAAAGTT 57.640 32.000 0.00 0.00 35.29 2.66
1990 2547 6.582295 CGAACAGGATCAAAATGTTGGTAAAG 59.418 38.462 8.88 0.00 37.29 1.85
2014 2571 2.169832 AATCATTAGGTGGATCGCCG 57.830 50.000 0.11 0.00 39.30 6.46
2017 2574 6.538742 ACAGTGTAAAATCATTAGGTGGATCG 59.461 38.462 0.00 0.00 0.00 3.69
2043 2604 7.674120 ACAGCAGTCATATATTTCATAGAGCA 58.326 34.615 0.00 0.00 0.00 4.26
2048 2609 9.645059 GAAGCTACAGCAGTCATATATTTCATA 57.355 33.333 3.70 0.00 45.16 2.15
2049 2610 7.330454 CGAAGCTACAGCAGTCATATATTTCAT 59.670 37.037 3.70 0.00 45.16 2.57
2052 2613 6.516718 ACGAAGCTACAGCAGTCATATATTT 58.483 36.000 3.70 0.00 45.16 1.40
2054 2621 5.713792 ACGAAGCTACAGCAGTCATATAT 57.286 39.130 3.70 0.00 45.16 0.86
2060 2627 3.879932 AAAAACGAAGCTACAGCAGTC 57.120 42.857 3.70 0.00 45.16 3.51
2127 2717 8.510243 TTCACTGTGCTAATTCAATATGATGT 57.490 30.769 2.12 0.00 0.00 3.06
2144 2734 6.369059 ACTTCAGTCTTCAATTTCACTGTG 57.631 37.500 0.17 0.17 37.97 3.66
2166 2756 6.086222 CACACAGTGGCTCAAATTTATGTAC 58.914 40.000 5.31 0.00 0.00 2.90
2195 2786 9.353999 GTTCTGAACAAAACAATTACTCTGTTT 57.646 29.630 15.34 0.00 46.37 2.83
2212 2803 5.705902 CAATGCTGATGAATGTTCTGAACA 58.294 37.500 23.94 23.94 46.94 3.18
2225 2823 6.788243 TGAAACTGTATTAGCAATGCTGATG 58.212 36.000 20.72 8.25 40.10 3.07
2230 2828 8.537223 CAAATCATGAAACTGTATTAGCAATGC 58.463 33.333 0.00 0.00 0.00 3.56
2242 2922 5.013861 GCACAAAGCAAATCATGAAACTG 57.986 39.130 0.00 0.00 44.79 3.16
2308 2989 8.562892 CATAATAGCTATTGTCTTTCCAACCAG 58.437 37.037 25.99 2.52 0.00 4.00
2340 3021 0.685097 CTTCTGAACCGACCTTCCCA 59.315 55.000 0.00 0.00 0.00 4.37
2349 3030 0.784778 GTCGAGCAACTTCTGAACCG 59.215 55.000 0.00 0.00 0.00 4.44
2409 3090 1.927895 CTCTGTCAACGGGAGCATAC 58.072 55.000 0.00 0.00 0.00 2.39
2508 3189 5.771602 AAATTTTTGTTGTTGACGGTGTC 57.228 34.783 0.00 0.00 0.00 3.67
2568 3249 2.032550 CCTCGCAACATTGATAAGCCTG 59.967 50.000 0.00 0.00 0.00 4.85
2662 3344 5.847111 ACATTTGGATCAATGGACATGAG 57.153 39.130 0.00 0.00 0.00 2.90
2720 3402 8.859090 CCCAAGATAATGGCATAACTAAATGAA 58.141 33.333 0.00 0.00 39.26 2.57
2752 3434 8.480643 AATGTGTACTGTCTATGCTAAAAGAC 57.519 34.615 0.00 0.00 42.04 3.01
2753 3435 9.151471 GAAATGTGTACTGTCTATGCTAAAAGA 57.849 33.333 0.00 0.00 0.00 2.52
2754 3436 9.155975 AGAAATGTGTACTGTCTATGCTAAAAG 57.844 33.333 0.00 0.00 0.00 2.27
2755 3437 9.151471 GAGAAATGTGTACTGTCTATGCTAAAA 57.849 33.333 0.00 0.00 0.00 1.52
2833 3520 0.886043 GTGCTGCCTGACACACATCA 60.886 55.000 0.00 0.00 36.77 3.07
2860 3547 1.168714 GCGGTGGCTCTTCAAAGAAT 58.831 50.000 0.00 0.00 34.03 2.40
2986 3673 1.725641 TAAGCGAGCAGAATGTGGTG 58.274 50.000 0.00 0.00 36.87 4.17
2994 3681 3.954904 AGTTAAGAGGATAAGCGAGCAGA 59.045 43.478 0.00 0.00 0.00 4.26
2995 3682 4.314740 AGTTAAGAGGATAAGCGAGCAG 57.685 45.455 0.00 0.00 0.00 4.24
3000 3687 4.034510 CAGGCAAAGTTAAGAGGATAAGCG 59.965 45.833 0.00 0.00 0.00 4.68
3022 3709 1.537348 CCTTCCTGTCGACGAACAACA 60.537 52.381 11.62 0.00 0.00 3.33
3024 3711 0.599204 GCCTTCCTGTCGACGAACAA 60.599 55.000 11.62 0.12 0.00 2.83
3058 3746 0.108186 CACCGATAACAGCCTCTGCA 60.108 55.000 0.00 0.00 41.13 4.41
3088 3776 3.730761 GCAGTGGCAGCCAGTTCG 61.731 66.667 20.14 10.57 34.53 3.95
3248 3936 1.072331 TCCCAACTTCTCAGCAAGGAC 59.928 52.381 0.00 0.00 0.00 3.85
3337 4025 0.176680 CCAAGTCATCCGGGTCTCTG 59.823 60.000 0.00 0.00 0.00 3.35
3375 4063 1.733389 CGATGCCTTTTGTGACCATGC 60.733 52.381 0.00 0.00 0.00 4.06
3385 4073 0.250553 TGGGTTCGACGATGCCTTTT 60.251 50.000 15.54 0.00 0.00 2.27
3409 4097 2.658325 GACAATGTTGACAAATGCGCTC 59.342 45.455 9.73 0.00 0.00 5.03
3412 4100 4.664640 GCATTGACAATGTTGACAAATGCG 60.665 41.667 25.18 0.37 43.62 4.73
3436 4124 2.230892 TTGCTTGGCAACGTAGTCG 58.769 52.632 0.00 0.00 45.00 4.18
3507 4195 3.327439 ACCTGGATGGAGTTTATAGGGG 58.673 50.000 0.00 0.00 39.71 4.79
3723 4411 1.136305 GGTTCATCGTCCCGAGAATCA 59.864 52.381 0.00 0.00 39.91 2.57
3781 4469 1.831286 CATGATGGCCTGCTTCCCC 60.831 63.158 3.32 0.00 0.00 4.81
3865 4553 5.930135 AGCTTAAGAAAGACAAACTCCTGA 58.070 37.500 6.67 0.00 34.37 3.86
3931 4619 6.163135 ACCACTCATCATACTAGTAAAGCC 57.837 41.667 6.70 0.00 0.00 4.35
3991 4680 3.496331 CTTCTCCAGGTGGGCTTAAAAA 58.504 45.455 0.00 0.00 36.21 1.94
3996 4685 1.849823 AGCTTCTCCAGGTGGGCTT 60.850 57.895 0.00 0.00 36.21 4.35
4028 4717 9.152595 GCTCTTATTATATTTCTTTACGGAGGG 57.847 37.037 0.00 0.00 0.00 4.30
4029 4718 9.706691 TGCTCTTATTATATTTCTTTACGGAGG 57.293 33.333 0.00 0.00 0.00 4.30
4064 4753 5.476254 AGAGCGTTTAGACCACTAAAGTAGT 59.524 40.000 0.00 0.00 45.42 2.73
4065 4754 5.952033 AGAGCGTTTAGACCACTAAAGTAG 58.048 41.667 0.00 0.00 45.42 2.57
4066 4755 5.972107 AGAGCGTTTAGACCACTAAAGTA 57.028 39.130 0.00 0.00 45.42 2.24
4067 4756 4.868314 AGAGCGTTTAGACCACTAAAGT 57.132 40.909 0.00 0.00 45.42 2.66
4068 4757 9.530633 AATATAAGAGCGTTTAGACCACTAAAG 57.469 33.333 0.00 0.00 45.42 1.85
4069 4758 9.880157 AAATATAAGAGCGTTTAGACCACTAAA 57.120 29.630 0.00 0.00 43.52 1.85
4095 4784 9.828039 TCGTAAGATGTACTCTCTCTGTAAATA 57.172 33.333 0.00 0.00 45.01 1.40
4096 4785 8.734218 TCGTAAGATGTACTCTCTCTGTAAAT 57.266 34.615 0.00 0.00 45.01 1.40
4125 4814 0.925466 GGCATCACATTTTGCGCATC 59.075 50.000 12.75 0.00 39.78 3.91
4133 4822 3.899052 CCAAGAATGGGCATCACATTT 57.101 42.857 0.00 0.00 43.51 2.32
4145 4834 1.064166 AGGACATCAGGCCCAAGAATG 60.064 52.381 0.00 0.00 0.00 2.67
4146 4835 1.302907 AGGACATCAGGCCCAAGAAT 58.697 50.000 0.00 0.00 0.00 2.40
4159 4848 8.057623 AGATCATCCAATCAAAAAGTAGGACAT 58.942 33.333 0.00 0.00 0.00 3.06
4203 4892 6.015519 CCAAAAAGTTGTGAAGGGATCATACA 60.016 38.462 0.00 0.00 40.97 2.29
4211 4914 5.534654 TGTCTATCCAAAAAGTTGTGAAGGG 59.465 40.000 0.00 0.00 32.40 3.95
4218 4921 5.299279 ACAGTGGTGTCTATCCAAAAAGTTG 59.701 40.000 0.00 0.00 36.68 3.16
4270 5029 4.957684 AACTGAGCCTACTTACAGTTGT 57.042 40.909 0.00 0.00 46.87 3.32
4305 5064 2.607526 CCACAAATGCGAAACATGCTGA 60.608 45.455 0.00 0.00 39.60 4.26
4371 5130 2.653448 CGAGTGGAGATGCGAGCG 60.653 66.667 0.00 0.00 0.00 5.03
4372 5131 2.959071 GCGAGTGGAGATGCGAGC 60.959 66.667 0.00 0.00 0.00 5.03
4373 5132 0.938637 GATGCGAGTGGAGATGCGAG 60.939 60.000 0.00 0.00 0.00 5.03
4374 5133 1.066422 GATGCGAGTGGAGATGCGA 59.934 57.895 0.00 0.00 0.00 5.10
4375 5134 0.807275 TTGATGCGAGTGGAGATGCG 60.807 55.000 0.00 0.00 0.00 4.73
4376 5135 0.935898 CTTGATGCGAGTGGAGATGC 59.064 55.000 0.00 0.00 0.00 3.91
4377 5136 2.159128 ACTCTTGATGCGAGTGGAGATG 60.159 50.000 0.00 0.00 40.07 2.90
4396 7704 4.065281 GTGTCCGGTAGCGGCACT 62.065 66.667 33.61 0.00 35.11 4.40
4404 7712 1.069022 CGTTCTTCTTCGTGTCCGGTA 60.069 52.381 0.00 0.00 33.95 4.02
4405 7713 0.318445 CGTTCTTCTTCGTGTCCGGT 60.318 55.000 0.00 0.00 33.95 5.28
4433 7752 5.712152 ATTTCCTCACCAAAGTCATCAAC 57.288 39.130 0.00 0.00 0.00 3.18
4441 7760 5.520376 ACAGTCAAATTTCCTCACCAAAG 57.480 39.130 0.00 0.00 0.00 2.77
4470 7789 3.592059 CGGATCCGTCTTGGTTTCTAAA 58.408 45.455 26.35 0.00 39.52 1.85
4545 7882 5.612261 ACAGGAGGGTTTAGGGTTTTACTTA 59.388 40.000 0.00 0.00 0.00 2.24
4546 7883 4.417854 ACAGGAGGGTTTAGGGTTTTACTT 59.582 41.667 0.00 0.00 0.00 2.24
4578 7922 4.099633 TCCTGTTGAGGATGAGAATCTGT 58.900 43.478 0.00 0.00 44.13 3.41
4594 7938 2.448931 TGGTTCGGGGGTCCTGTT 60.449 61.111 0.00 0.00 0.00 3.16
4595 7939 3.246880 GTGGTTCGGGGGTCCTGT 61.247 66.667 0.00 0.00 0.00 4.00
4596 7940 2.536997 GATGTGGTTCGGGGGTCCTG 62.537 65.000 0.00 0.00 0.00 3.86
4597 7941 2.204090 ATGTGGTTCGGGGGTCCT 60.204 61.111 0.00 0.00 0.00 3.85
4598 7942 2.271173 GATGTGGTTCGGGGGTCC 59.729 66.667 0.00 0.00 0.00 4.46
4599 7943 2.125269 CGATGTGGTTCGGGGGTC 60.125 66.667 0.00 0.00 35.50 4.46
4600 7944 2.605295 TCGATGTGGTTCGGGGGT 60.605 61.111 0.00 0.00 39.56 4.95
4601 7945 2.186903 CTCGATGTGGTTCGGGGG 59.813 66.667 0.00 0.00 39.56 5.40
4606 7993 1.846541 GCTAGCTCTCGATGTGGTTC 58.153 55.000 7.70 0.00 0.00 3.62
4622 8009 1.063190 TCTCCCCTTCCATCTTCGCTA 60.063 52.381 0.00 0.00 0.00 4.26
4623 8010 0.325671 TCTCCCCTTCCATCTTCGCT 60.326 55.000 0.00 0.00 0.00 4.93
4624 8011 0.105778 CTCTCCCCTTCCATCTTCGC 59.894 60.000 0.00 0.00 0.00 4.70
4625 8012 0.105778 GCTCTCCCCTTCCATCTTCG 59.894 60.000 0.00 0.00 0.00 3.79
4626 8013 0.105778 CGCTCTCCCCTTCCATCTTC 59.894 60.000 0.00 0.00 0.00 2.87
4627 8014 0.325671 TCGCTCTCCCCTTCCATCTT 60.326 55.000 0.00 0.00 0.00 2.40
4689 8076 2.044352 TCGCCCAGGAGATCGTCA 60.044 61.111 0.00 0.00 0.00 4.35
4875 8262 4.002797 AACTGCGGGGATTGCTTC 57.997 55.556 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.