Multiple sequence alignment - TraesCS7D01G483700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G483700 chr7D 100.000 3411 0 0 1 3411 593667872 593664462 0.000000e+00 6300.0
1 TraesCS7D01G483700 chr7D 79.305 1266 190 43 1187 2425 594071774 594072994 0.000000e+00 821.0
2 TraesCS7D01G483700 chr7D 79.134 1270 202 39 1187 2438 594062724 594063948 0.000000e+00 819.0
3 TraesCS7D01G483700 chr7D 74.169 1293 244 50 1166 2415 594024552 594023307 4.010000e-124 455.0
4 TraesCS7D01G483700 chr7D 73.422 1283 268 47 1166 2415 594130567 594131809 2.450000e-111 412.0
5 TraesCS7D01G483700 chr7D 90.385 52 4 1 2828 2878 594073487 594073538 2.200000e-07 67.6
6 TraesCS7D01G483700 chr7B 88.940 1510 125 21 1168 2661 667320584 667322067 0.000000e+00 1825.0
7 TraesCS7D01G483700 chr7B 96.785 591 18 1 1 590 667309866 667310456 0.000000e+00 985.0
8 TraesCS7D01G483700 chr7B 78.062 1445 227 50 1166 2559 667146854 667145449 0.000000e+00 830.0
9 TraesCS7D01G483700 chr7B 97.739 398 8 1 2664 3060 667322108 667322505 0.000000e+00 684.0
10 TraesCS7D01G483700 chr7B 94.350 354 17 1 3058 3411 667337205 667337555 1.080000e-149 540.0
11 TraesCS7D01G483700 chr7B 87.088 364 39 5 1152 1511 667311282 667311641 4.100000e-109 405.0
12 TraesCS7D01G483700 chr7B 73.816 1035 175 44 1609 2594 667317001 667317988 4.250000e-84 322.0
13 TraesCS7D01G483700 chr7B 88.119 202 16 5 943 1138 667320310 667320509 2.050000e-57 233.0
14 TraesCS7D01G483700 chr7B 88.421 190 19 2 971 1157 667311059 667311248 3.420000e-55 226.0
15 TraesCS7D01G483700 chr7B 96.324 136 5 0 799 934 667310622 667310757 1.230000e-54 224.0
16 TraesCS7D01G483700 chr7B 83.621 232 32 6 1191 1419 667103096 667103324 2.670000e-51 213.0
17 TraesCS7D01G483700 chr7B 84.500 200 30 1 1221 1419 667110475 667110276 2.690000e-46 196.0
18 TraesCS7D01G483700 chr7B 91.304 92 5 1 587 678 658512596 658512508 4.620000e-24 122.0
19 TraesCS7D01G483700 chr7A 94.764 592 24 5 1 590 686234075 686233489 0.000000e+00 915.0
20 TraesCS7D01G483700 chr7A 94.398 482 22 4 1152 1632 686230394 686229917 0.000000e+00 736.0
21 TraesCS7D01G483700 chr7A 86.977 215 25 2 943 1157 686230639 686230428 4.400000e-59 239.0
22 TraesCS7D01G483700 chr7A 94.286 140 7 1 799 938 686233296 686233158 2.670000e-51 213.0
23 TraesCS7D01G483700 chr7A 89.796 98 6 4 585 681 256227398 256227492 4.620000e-24 122.0
24 TraesCS7D01G483700 chr7A 89.216 102 5 6 588 689 581850908 581851003 4.620000e-24 122.0
25 TraesCS7D01G483700 chr6D 92.222 90 4 1 587 676 28032440 28032526 1.290000e-24 124.0
26 TraesCS7D01G483700 chr6B 92.135 89 6 1 587 675 705834286 705834199 1.290000e-24 124.0
27 TraesCS7D01G483700 chrUn 91.304 92 5 1 587 678 399203735 399203647 4.620000e-24 122.0
28 TraesCS7D01G483700 chr5D 91.304 92 5 3 584 675 532592456 532592544 4.620000e-24 122.0
29 TraesCS7D01G483700 chr4D 91.304 92 5 1 587 678 320593734 320593822 4.620000e-24 122.0
30 TraesCS7D01G483700 chr2A 90.526 95 5 3 584 678 754348745 754348655 4.620000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G483700 chr7D 593664462 593667872 3410 True 6300.00 6300 100.00000 1 3411 1 chr7D.!!$R1 3410
1 TraesCS7D01G483700 chr7D 594062724 594063948 1224 False 819.00 819 79.13400 1187 2438 1 chr7D.!!$F1 1251
2 TraesCS7D01G483700 chr7D 594023307 594024552 1245 True 455.00 455 74.16900 1166 2415 1 chr7D.!!$R2 1249
3 TraesCS7D01G483700 chr7D 594071774 594073538 1764 False 444.30 821 84.84500 1187 2878 2 chr7D.!!$F3 1691
4 TraesCS7D01G483700 chr7D 594130567 594131809 1242 False 412.00 412 73.42200 1166 2415 1 chr7D.!!$F2 1249
5 TraesCS7D01G483700 chr7B 667145449 667146854 1405 True 830.00 830 78.06200 1166 2559 1 chr7B.!!$R3 1393
6 TraesCS7D01G483700 chr7B 667317001 667322505 5504 False 766.00 1825 87.15350 943 3060 4 chr7B.!!$F4 2117
7 TraesCS7D01G483700 chr7B 667309866 667311641 1775 False 460.00 985 92.15450 1 1511 4 chr7B.!!$F3 1510
8 TraesCS7D01G483700 chr7A 686229917 686234075 4158 True 525.75 915 92.60625 1 1632 4 chr7A.!!$R1 1631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 1007 0.386352 TCGTGTGTTAGCGTTCTCCG 60.386 55.0 0.0 0.0 40.4 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2438 7220 1.021968 AAACAAAGCACCAGACGGAC 58.978 50.0 0.0 0.0 35.59 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.257894 CGCATAATCGAGGAGCAGATC 58.742 52.381 0.00 0.00 0.00 2.75
286 287 0.552848 ATCATCGGCAAGGTGGGATT 59.447 50.000 0.00 0.00 0.00 3.01
590 592 2.962421 GGAGAAGCTGCTGGTAGATACT 59.038 50.000 0.00 0.00 0.00 2.12
592 594 2.962421 AGAAGCTGCTGGTAGATACTCC 59.038 50.000 1.35 0.00 0.00 3.85
593 595 1.710816 AGCTGCTGGTAGATACTCCC 58.289 55.000 0.00 0.00 0.00 4.30
594 596 1.219213 AGCTGCTGGTAGATACTCCCT 59.781 52.381 0.00 0.00 0.00 4.20
595 597 1.616374 GCTGCTGGTAGATACTCCCTC 59.384 57.143 0.00 0.00 0.00 4.30
596 598 2.243810 CTGCTGGTAGATACTCCCTCC 58.756 57.143 0.00 0.00 0.00 4.30
597 599 1.249407 GCTGGTAGATACTCCCTCCG 58.751 60.000 0.00 0.00 0.00 4.63
598 600 1.479021 GCTGGTAGATACTCCCTCCGT 60.479 57.143 0.00 0.00 0.00 4.69
599 601 2.224719 GCTGGTAGATACTCCCTCCGTA 60.225 54.545 0.00 0.00 0.00 4.02
600 602 3.749954 GCTGGTAGATACTCCCTCCGTAA 60.750 52.174 0.00 0.00 0.00 3.18
601 603 4.467769 CTGGTAGATACTCCCTCCGTAAA 58.532 47.826 0.00 0.00 0.00 2.01
602 604 4.467769 TGGTAGATACTCCCTCCGTAAAG 58.532 47.826 0.00 0.00 0.00 1.85
603 605 4.166725 TGGTAGATACTCCCTCCGTAAAGA 59.833 45.833 0.00 0.00 0.00 2.52
604 606 5.136105 GGTAGATACTCCCTCCGTAAAGAA 58.864 45.833 0.00 0.00 0.00 2.52
605 607 5.595952 GGTAGATACTCCCTCCGTAAAGAAA 59.404 44.000 0.00 0.00 0.00 2.52
606 608 6.267242 GGTAGATACTCCCTCCGTAAAGAAAT 59.733 42.308 0.00 0.00 0.00 2.17
607 609 7.449704 GGTAGATACTCCCTCCGTAAAGAAATA 59.550 40.741 0.00 0.00 0.00 1.40
608 610 9.022884 GTAGATACTCCCTCCGTAAAGAAATAT 57.977 37.037 0.00 0.00 0.00 1.28
610 612 9.597681 AGATACTCCCTCCGTAAAGAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
617 619 9.152595 CCCTCCGTAAAGAAATATAATAAGAGC 57.847 37.037 0.00 0.00 0.00 4.09
648 650 6.098017 ATCACTACTTTAGTGGTCTAAACGC 58.902 40.000 12.33 0.00 46.78 4.84
649 651 5.718724 ACTACTTTAGTGGTCTAAACGCT 57.281 39.130 0.00 0.00 40.05 5.07
650 652 5.707931 ACTACTTTAGTGGTCTAAACGCTC 58.292 41.667 0.00 0.00 40.05 5.03
652 654 5.211174 ACTTTAGTGGTCTAAACGCTCTT 57.789 39.130 0.00 0.00 40.05 2.85
655 657 8.059798 ACTTTAGTGGTCTAAACGCTCTTATA 57.940 34.615 0.00 0.00 40.05 0.98
657 659 9.530633 CTTTAGTGGTCTAAACGCTCTTATATT 57.469 33.333 0.00 0.00 40.05 1.28
658 660 9.880157 TTTAGTGGTCTAAACGCTCTTATATTT 57.120 29.630 0.00 0.00 40.05 1.40
696 698 2.073117 TCTTACGAACAGATGCGCAA 57.927 45.000 17.11 0.00 0.00 4.85
704 706 3.504863 GAACAGATGCGCAAAATGTGAT 58.495 40.909 17.11 0.71 0.00 3.06
708 710 0.460635 ATGCGCAAAATGTGATGCCC 60.461 50.000 17.11 0.00 39.39 5.36
766 768 3.685139 TCTTACTGTTGCTGCTAGCTT 57.315 42.857 17.23 0.00 42.97 3.74
774 790 3.873361 TGTTGCTGCTAGCTTGTATGATC 59.127 43.478 17.23 0.00 42.97 2.92
781 797 4.061596 GCTAGCTTGTATGATCCCTTCAC 58.938 47.826 7.70 0.00 37.11 3.18
862 934 7.476540 TGTAAGTAGGCTCAGTTTCATTCTA 57.523 36.000 0.00 0.00 0.00 2.10
863 935 8.079211 TGTAAGTAGGCTCAGTTTCATTCTAT 57.921 34.615 0.00 0.00 0.00 1.98
865 937 9.384764 GTAAGTAGGCTCAGTTTCATTCTATTT 57.615 33.333 0.00 0.00 0.00 1.40
867 939 9.606631 AAGTAGGCTCAGTTTCATTCTATTTAG 57.393 33.333 0.00 0.00 0.00 1.85
874 946 9.107177 CTCAGTTTCATTCTATTTAGTCAGCAT 57.893 33.333 0.00 0.00 0.00 3.79
875 947 8.886719 TCAGTTTCATTCTATTTAGTCAGCATG 58.113 33.333 0.00 0.00 37.54 4.06
876 948 8.671921 CAGTTTCATTCTATTTAGTCAGCATGT 58.328 33.333 0.00 0.00 37.40 3.21
877 949 9.236006 AGTTTCATTCTATTTAGTCAGCATGTT 57.764 29.630 0.00 0.00 37.40 2.71
878 950 9.846248 GTTTCATTCTATTTAGTCAGCATGTTT 57.154 29.630 0.00 0.00 37.40 2.83
881 953 5.718649 TCTATTTAGTCAGCATGTTTCGC 57.281 39.130 0.00 0.00 37.40 4.70
882 954 5.175127 TCTATTTAGTCAGCATGTTTCGCA 58.825 37.500 0.00 0.00 37.40 5.10
883 955 4.970662 ATTTAGTCAGCATGTTTCGCAT 57.029 36.364 0.00 0.00 38.60 4.73
884 956 4.764679 TTTAGTCAGCATGTTTCGCATT 57.235 36.364 0.00 0.00 35.19 3.56
886 958 2.937591 AGTCAGCATGTTTCGCATTTG 58.062 42.857 0.00 0.00 35.19 2.32
888 960 2.406024 GTCAGCATGTTTCGCATTTGTG 59.594 45.455 0.00 0.00 35.19 3.33
889 961 1.722464 CAGCATGTTTCGCATTTGTGG 59.278 47.619 0.00 0.00 35.19 4.17
890 962 1.340889 AGCATGTTTCGCATTTGTGGT 59.659 42.857 0.00 0.00 35.19 4.16
891 963 1.456544 GCATGTTTCGCATTTGTGGTG 59.543 47.619 0.00 0.00 35.19 4.17
892 964 2.741612 CATGTTTCGCATTTGTGGTGT 58.258 42.857 0.00 0.00 35.19 4.16
893 965 3.855154 GCATGTTTCGCATTTGTGGTGTA 60.855 43.478 0.00 0.00 35.19 2.90
895 967 2.946329 TGTTTCGCATTTGTGGTGTAGT 59.054 40.909 0.00 0.00 0.00 2.73
897 969 4.575236 TGTTTCGCATTTGTGGTGTAGTTA 59.425 37.500 0.00 0.00 0.00 2.24
898 970 5.066117 TGTTTCGCATTTGTGGTGTAGTTAA 59.934 36.000 0.00 0.00 0.00 2.01
899 971 5.752892 TTCGCATTTGTGGTGTAGTTAAA 57.247 34.783 0.00 0.00 0.00 1.52
902 974 5.470437 TCGCATTTGTGGTGTAGTTAAATGA 59.530 36.000 11.00 0.00 39.73 2.57
903 975 5.794945 CGCATTTGTGGTGTAGTTAAATGAG 59.205 40.000 11.00 5.14 39.73 2.90
905 977 6.801862 GCATTTGTGGTGTAGTTAAATGAGAC 59.198 38.462 11.00 0.00 39.73 3.36
906 978 7.521423 GCATTTGTGGTGTAGTTAAATGAGACA 60.521 37.037 11.00 0.00 39.73 3.41
907 979 8.514594 CATTTGTGGTGTAGTTAAATGAGACAT 58.485 33.333 0.00 0.00 39.73 3.06
909 981 6.764379 TGTGGTGTAGTTAAATGAGACATCA 58.236 36.000 0.00 0.00 40.50 3.07
910 982 7.061752 GTGGTGTAGTTAAATGAGACATCAC 57.938 40.000 5.28 5.28 42.87 3.06
914 986 6.368791 GTGTAGTTAAATGAGACATCACTGCA 59.631 38.462 0.00 0.00 38.57 4.41
915 987 7.065085 GTGTAGTTAAATGAGACATCACTGCAT 59.935 37.037 0.00 0.00 38.57 3.96
917 989 7.081526 AGTTAAATGAGACATCACTGCATTC 57.918 36.000 0.00 0.00 38.57 2.67
921 993 2.289010 TGAGACATCACTGCATTCGTGT 60.289 45.455 4.68 0.23 34.14 4.49
922 994 2.071540 AGACATCACTGCATTCGTGTG 58.928 47.619 4.68 0.91 34.14 3.82
924 996 2.221169 ACATCACTGCATTCGTGTGTT 58.779 42.857 4.68 0.00 34.14 3.32
925 997 3.398406 ACATCACTGCATTCGTGTGTTA 58.602 40.909 4.68 0.00 34.14 2.41
926 998 3.433274 ACATCACTGCATTCGTGTGTTAG 59.567 43.478 4.68 0.00 34.14 2.34
927 999 1.798223 TCACTGCATTCGTGTGTTAGC 59.202 47.619 4.68 0.00 34.14 3.09
929 1001 0.790207 CTGCATTCGTGTGTTAGCGT 59.210 50.000 0.00 0.00 0.00 5.07
931 1003 1.193650 TGCATTCGTGTGTTAGCGTTC 59.806 47.619 0.00 0.00 0.00 3.95
932 1004 1.459592 GCATTCGTGTGTTAGCGTTCT 59.540 47.619 0.00 0.00 0.00 3.01
933 1005 2.472397 GCATTCGTGTGTTAGCGTTCTC 60.472 50.000 0.00 0.00 0.00 2.87
935 1007 0.386352 TCGTGTGTTAGCGTTCTCCG 60.386 55.000 0.00 0.00 40.40 4.63
944 1016 2.103143 CGTTCTCCGCTCGCATCT 59.897 61.111 0.00 0.00 0.00 2.90
945 1017 1.941734 CGTTCTCCGCTCGCATCTC 60.942 63.158 0.00 0.00 0.00 2.75
946 1018 1.590259 GTTCTCCGCTCGCATCTCC 60.590 63.158 0.00 0.00 0.00 3.71
959 5571 1.472201 GCATCTCCACTCGCATCAAGA 60.472 52.381 0.00 0.00 0.00 3.02
967 5579 2.816958 CGCATCAAGAGTGCCGCT 60.817 61.111 0.00 0.00 39.39 5.52
968 5580 1.519234 CGCATCAAGAGTGCCGCTA 60.519 57.895 0.00 0.00 39.39 4.26
986 5609 2.593257 CTACCGGACACGAAGAAGAAC 58.407 52.381 9.46 0.00 44.60 3.01
992 5615 3.057734 GGACACGAAGAAGAACGACAAT 58.942 45.455 0.00 0.00 0.00 2.71
996 5619 6.211664 ACACGAAGAAGAACGACAATAAAG 57.788 37.500 0.00 0.00 0.00 1.85
1004 5627 7.797819 AGAAGAACGACAATAAAGTTGATGAC 58.202 34.615 0.00 0.00 0.00 3.06
1033 5656 3.074412 AGGAAATTTGACTGTTCGCGAT 58.926 40.909 10.88 0.00 0.00 4.58
1108 5743 6.323225 ACTCTATGCCAGGTAAGTAAACGTAT 59.677 38.462 0.00 0.00 0.00 3.06
1141 5783 4.042435 CCTAAACCCTCCTGTTTCTTACCA 59.958 45.833 0.00 0.00 39.15 3.25
1144 5786 2.372172 ACCCTCCTGTTTCTTACCACAG 59.628 50.000 0.00 0.00 40.23 3.66
1169 5854 2.606519 TCCTCAACAGGACCCCCG 60.607 66.667 0.00 0.00 44.75 5.73
1182 5868 2.355986 CCCCCGAACCACATCGAGA 61.356 63.158 0.00 0.00 45.48 4.04
1183 5869 1.141881 CCCCGAACCACATCGAGAG 59.858 63.158 0.00 0.00 45.48 3.20
1184 5870 1.519455 CCCGAACCACATCGAGAGC 60.519 63.158 0.00 0.00 45.48 4.09
1185 5871 1.513158 CCGAACCACATCGAGAGCT 59.487 57.895 0.00 0.00 45.48 4.09
1190 5876 0.748367 ACCACATCGAGAGCTAGCGA 60.748 55.000 9.55 12.08 41.14 4.93
1385 6071 4.070552 GCTTCGGCGACCTCCACT 62.071 66.667 10.16 0.00 0.00 4.00
1655 6374 2.749865 CCTGCAACATACACGGCCG 61.750 63.158 26.86 26.86 0.00 6.13
1674 6393 1.538876 TCCTCCCACCAGTTCCCAG 60.539 63.158 0.00 0.00 0.00 4.45
1862 6602 2.660189 AATCCAAGAAATTGCGCTGG 57.340 45.000 9.73 6.04 0.00 4.85
2081 6834 1.640428 TCTTCGCATCTGGCTTTACG 58.360 50.000 0.00 0.00 41.67 3.18
2082 6835 1.203758 TCTTCGCATCTGGCTTTACGA 59.796 47.619 0.00 0.00 41.67 3.43
2083 6836 1.324736 CTTCGCATCTGGCTTTACGAC 59.675 52.381 0.00 0.00 41.67 4.34
2158 6914 3.118811 TGCGTGAGATATGTGTCCATCAA 60.119 43.478 0.00 0.00 32.29 2.57
2195 6951 2.422597 TGTTTGACGATGTGGGTGATC 58.577 47.619 0.00 0.00 0.00 2.92
2198 6954 1.275666 TGACGATGTGGGTGATCCTT 58.724 50.000 0.00 0.00 36.20 3.36
2211 6970 4.262079 GGGTGATCCTTCTCTTATGGTACG 60.262 50.000 0.00 0.00 0.00 3.67
2249 7008 3.832527 TCAGGGTTTCTTTTCTTGGAGG 58.167 45.455 0.00 0.00 0.00 4.30
2311 7073 7.395617 AGGAGTTAAAGAAGGTTTATGAGGTC 58.604 38.462 0.00 0.00 0.00 3.85
2418 7192 2.795329 TCCAAAAGAATGACCCTCTGC 58.205 47.619 0.00 0.00 0.00 4.26
2426 7208 2.683211 ATGACCCTCTGCAAGGTTTT 57.317 45.000 12.18 0.00 44.56 2.43
2438 7220 3.119173 TGCAAGGTTTTGTCTCTTGTTGG 60.119 43.478 0.00 0.00 39.80 3.77
2446 7228 1.068588 TGTCTCTTGTTGGTCCGTCTG 59.931 52.381 0.00 0.00 0.00 3.51
2463 7245 4.279659 CGTCTGGTGCTTTGTTTTTCTAC 58.720 43.478 0.00 0.00 0.00 2.59
2472 7254 5.533528 TGCTTTGTTTTTCTACCTAGTTCCC 59.466 40.000 0.00 0.00 0.00 3.97
2488 7275 7.285401 ACCTAGTTCCCATTGTGCTAATATTTG 59.715 37.037 0.00 0.00 0.00 2.32
2661 7527 6.961554 CGTTGCAGATTTACATTTTAGGAGAC 59.038 38.462 0.00 0.00 0.00 3.36
2815 7776 1.606668 GTCGTCAGGATTGCCAAACAA 59.393 47.619 0.00 0.00 44.01 2.83
2885 7856 4.564041 TGCATGTTTTGAACAAACACTGT 58.436 34.783 2.34 0.00 45.86 3.55
2893 7864 3.867857 TGAACAAACACTGTCAGCTGTA 58.132 40.909 14.67 3.36 37.23 2.74
3052 8023 3.586470 ATGTCCAACACCACCAGTTTA 57.414 42.857 0.00 0.00 0.00 2.01
3055 8026 2.032426 GTCCAACACCACCAGTTTAACG 59.968 50.000 0.00 0.00 0.00 3.18
3060 8031 1.068610 CACCACCAGTTTAACGCATGG 60.069 52.381 11.22 11.22 38.83 3.66
3061 8032 1.243902 CCACCAGTTTAACGCATGGT 58.756 50.000 2.22 2.22 46.91 3.55
3062 8033 1.611491 CCACCAGTTTAACGCATGGTT 59.389 47.619 4.99 0.00 43.49 3.67
3063 8034 2.606795 CCACCAGTTTAACGCATGGTTG 60.607 50.000 4.99 0.00 43.49 3.77
3064 8035 2.034053 CACCAGTTTAACGCATGGTTGT 59.966 45.455 4.99 0.00 43.49 3.32
3065 8036 3.251245 CACCAGTTTAACGCATGGTTGTA 59.749 43.478 4.99 0.00 43.49 2.41
3066 8037 3.884091 ACCAGTTTAACGCATGGTTGTAA 59.116 39.130 2.22 2.69 43.49 2.41
3067 8038 4.023536 ACCAGTTTAACGCATGGTTGTAAG 60.024 41.667 2.22 0.00 43.49 2.34
3068 8039 4.214545 CCAGTTTAACGCATGGTTGTAAGA 59.785 41.667 9.13 0.00 39.75 2.10
3069 8040 5.144359 CAGTTTAACGCATGGTTGTAAGAC 58.856 41.667 9.13 0.00 39.75 3.01
3070 8041 5.049680 CAGTTTAACGCATGGTTGTAAGACT 60.050 40.000 9.13 0.18 39.75 3.24
3071 8042 5.529800 AGTTTAACGCATGGTTGTAAGACTT 59.470 36.000 9.13 0.00 39.75 3.01
3072 8043 6.038936 AGTTTAACGCATGGTTGTAAGACTTT 59.961 34.615 9.13 0.00 39.75 2.66
3073 8044 7.227116 AGTTTAACGCATGGTTGTAAGACTTTA 59.773 33.333 9.13 0.00 39.75 1.85
3074 8045 7.493743 TTAACGCATGGTTGTAAGACTTTAA 57.506 32.000 9.13 0.00 39.75 1.52
3075 8046 6.380095 AACGCATGGTTGTAAGACTTTAAA 57.620 33.333 0.00 0.00 37.50 1.52
3076 8047 6.569179 ACGCATGGTTGTAAGACTTTAAAT 57.431 33.333 0.00 0.00 0.00 1.40
3077 8048 7.675962 ACGCATGGTTGTAAGACTTTAAATA 57.324 32.000 0.00 0.00 0.00 1.40
3078 8049 7.524065 ACGCATGGTTGTAAGACTTTAAATAC 58.476 34.615 0.00 0.00 0.00 1.89
3079 8050 6.964934 CGCATGGTTGTAAGACTTTAAATACC 59.035 38.462 0.00 0.00 0.00 2.73
3080 8051 7.361371 CGCATGGTTGTAAGACTTTAAATACCA 60.361 37.037 0.00 0.00 33.74 3.25
3081 8052 8.466798 GCATGGTTGTAAGACTTTAAATACCAT 58.533 33.333 0.00 0.00 37.16 3.55
3082 8053 9.787532 CATGGTTGTAAGACTTTAAATACCATG 57.212 33.333 20.71 20.71 41.51 3.66
3083 8054 8.927675 TGGTTGTAAGACTTTAAATACCATGT 57.072 30.769 0.00 0.00 0.00 3.21
3084 8055 9.357161 TGGTTGTAAGACTTTAAATACCATGTT 57.643 29.630 0.00 0.00 0.00 2.71
3085 8056 9.620660 GGTTGTAAGACTTTAAATACCATGTTG 57.379 33.333 0.00 0.00 0.00 3.33
3088 8059 9.787435 TGTAAGACTTTAAATACCATGTTGACT 57.213 29.630 0.00 0.00 0.00 3.41
3092 8063 8.932791 AGACTTTAAATACCATGTTGACTTACG 58.067 33.333 0.00 0.00 0.00 3.18
3093 8064 7.524065 ACTTTAAATACCATGTTGACTTACGC 58.476 34.615 0.00 0.00 0.00 4.42
3094 8065 7.173562 ACTTTAAATACCATGTTGACTTACGCA 59.826 33.333 0.00 0.00 0.00 5.24
3095 8066 5.545658 AAATACCATGTTGACTTACGCAG 57.454 39.130 0.00 0.00 0.00 5.18
3096 8067 1.156736 ACCATGTTGACTTACGCAGC 58.843 50.000 0.00 0.00 0.00 5.25
3097 8068 1.270839 ACCATGTTGACTTACGCAGCT 60.271 47.619 0.00 0.00 0.00 4.24
3098 8069 1.394917 CCATGTTGACTTACGCAGCTC 59.605 52.381 0.00 0.00 0.00 4.09
3099 8070 2.341257 CATGTTGACTTACGCAGCTCT 58.659 47.619 0.00 0.00 0.00 4.09
3100 8071 2.526304 TGTTGACTTACGCAGCTCTT 57.474 45.000 0.00 0.00 0.00 2.85
3101 8072 2.135139 TGTTGACTTACGCAGCTCTTG 58.865 47.619 0.00 0.00 0.00 3.02
3115 8086 5.876612 CAGCTCTTGCCCTTTCATATATC 57.123 43.478 0.00 0.00 40.80 1.63
3116 8087 5.311265 CAGCTCTTGCCCTTTCATATATCA 58.689 41.667 0.00 0.00 40.80 2.15
3117 8088 5.411977 CAGCTCTTGCCCTTTCATATATCAG 59.588 44.000 0.00 0.00 40.80 2.90
3118 8089 4.699257 GCTCTTGCCCTTTCATATATCAGG 59.301 45.833 0.00 0.00 0.00 3.86
3119 8090 5.747248 GCTCTTGCCCTTTCATATATCAGGT 60.747 44.000 2.73 0.00 0.00 4.00
3120 8091 5.624159 TCTTGCCCTTTCATATATCAGGTG 58.376 41.667 2.73 0.00 0.00 4.00
3121 8092 5.369404 TCTTGCCCTTTCATATATCAGGTGA 59.631 40.000 2.73 0.00 0.00 4.02
3122 8093 5.233083 TGCCCTTTCATATATCAGGTGAG 57.767 43.478 2.73 0.00 0.00 3.51
3123 8094 4.006319 GCCCTTTCATATATCAGGTGAGC 58.994 47.826 2.73 0.00 0.00 4.26
3124 8095 4.263243 GCCCTTTCATATATCAGGTGAGCT 60.263 45.833 0.00 0.00 0.00 4.09
3125 8096 5.046304 GCCCTTTCATATATCAGGTGAGCTA 60.046 44.000 0.00 0.00 0.00 3.32
3126 8097 6.638610 CCCTTTCATATATCAGGTGAGCTAG 58.361 44.000 0.00 0.00 0.00 3.42
3127 8098 6.105333 CCTTTCATATATCAGGTGAGCTAGC 58.895 44.000 6.62 6.62 0.00 3.42
3128 8099 6.070881 CCTTTCATATATCAGGTGAGCTAGCT 60.071 42.308 19.45 19.45 37.70 3.32
3135 8106 2.706339 AGGTGAGCTAGCTGGAAATG 57.294 50.000 24.99 0.00 35.38 2.32
3136 8107 1.020437 GGTGAGCTAGCTGGAAATGC 58.980 55.000 24.99 6.14 0.00 3.56
3137 8108 1.679944 GGTGAGCTAGCTGGAAATGCA 60.680 52.381 24.99 9.11 0.00 3.96
3138 8109 1.669779 GTGAGCTAGCTGGAAATGCAG 59.330 52.381 24.99 0.00 0.00 4.41
3139 8110 1.307097 GAGCTAGCTGGAAATGCAGG 58.693 55.000 24.99 0.00 0.00 4.85
3140 8111 0.750911 AGCTAGCTGGAAATGCAGGC 60.751 55.000 18.57 0.00 0.00 4.85
3141 8112 1.033746 GCTAGCTGGAAATGCAGGCA 61.034 55.000 7.70 0.00 33.19 4.75
3142 8113 1.688772 CTAGCTGGAAATGCAGGCAT 58.311 50.000 0.00 0.00 38.46 4.40
3143 8114 1.337071 CTAGCTGGAAATGCAGGCATG 59.663 52.381 7.64 0.00 36.68 4.06
3144 8115 0.323999 AGCTGGAAATGCAGGCATGA 60.324 50.000 7.64 0.00 36.68 3.07
3145 8116 0.102481 GCTGGAAATGCAGGCATGAG 59.898 55.000 7.64 3.48 36.68 2.90
3146 8117 1.471119 CTGGAAATGCAGGCATGAGT 58.529 50.000 7.64 0.00 36.68 3.41
3147 8118 2.646930 CTGGAAATGCAGGCATGAGTA 58.353 47.619 7.64 0.00 36.68 2.59
3148 8119 2.357009 CTGGAAATGCAGGCATGAGTAC 59.643 50.000 7.64 0.00 36.68 2.73
3149 8120 2.290832 TGGAAATGCAGGCATGAGTACA 60.291 45.455 7.64 0.91 36.68 2.90
3150 8121 2.954318 GGAAATGCAGGCATGAGTACAT 59.046 45.455 7.64 0.00 36.68 2.29
3168 8139 9.836864 TGAGTACATGCTTTCTTTCATATATGT 57.163 29.630 12.42 0.00 0.00 2.29
3189 8160 6.474140 TGTACTTACAGGAGTTGAAGAACA 57.526 37.500 0.00 0.00 34.17 3.18
3190 8161 6.880484 TGTACTTACAGGAGTTGAAGAACAA 58.120 36.000 0.00 0.00 34.17 2.83
3191 8162 7.506114 TGTACTTACAGGAGTTGAAGAACAAT 58.494 34.615 0.00 0.00 40.76 2.71
3192 8163 7.990886 TGTACTTACAGGAGTTGAAGAACAATT 59.009 33.333 0.00 0.00 40.76 2.32
3193 8164 7.881775 ACTTACAGGAGTTGAAGAACAATTT 57.118 32.000 0.00 0.00 40.76 1.82
3194 8165 7.931275 ACTTACAGGAGTTGAAGAACAATTTC 58.069 34.615 0.00 0.00 40.76 2.17
3195 8166 5.424121 ACAGGAGTTGAAGAACAATTTCG 57.576 39.130 0.00 0.00 40.76 3.46
3196 8167 4.881850 ACAGGAGTTGAAGAACAATTTCGT 59.118 37.500 0.00 0.00 40.76 3.85
3197 8168 5.357032 ACAGGAGTTGAAGAACAATTTCGTT 59.643 36.000 0.00 0.00 40.76 3.85
3198 8169 5.909610 CAGGAGTTGAAGAACAATTTCGTTC 59.090 40.000 1.36 1.36 44.63 3.95
3199 8170 5.008712 AGGAGTTGAAGAACAATTTCGTTCC 59.991 40.000 5.32 0.00 45.27 3.62
3200 8171 5.183014 AGTTGAAGAACAATTTCGTTCCC 57.817 39.130 5.32 0.45 45.27 3.97
3201 8172 4.642885 AGTTGAAGAACAATTTCGTTCCCA 59.357 37.500 5.32 2.56 45.27 4.37
3202 8173 5.126384 AGTTGAAGAACAATTTCGTTCCCAA 59.874 36.000 5.32 7.24 45.27 4.12
3203 8174 4.927422 TGAAGAACAATTTCGTTCCCAAC 58.073 39.130 5.32 0.00 45.27 3.77
3204 8175 4.202070 TGAAGAACAATTTCGTTCCCAACC 60.202 41.667 5.32 0.00 45.27 3.77
3205 8176 2.292292 AGAACAATTTCGTTCCCAACCG 59.708 45.455 5.32 0.00 45.27 4.44
3206 8177 1.682740 ACAATTTCGTTCCCAACCGT 58.317 45.000 0.00 0.00 0.00 4.83
3207 8178 1.605232 ACAATTTCGTTCCCAACCGTC 59.395 47.619 0.00 0.00 0.00 4.79
3208 8179 1.604755 CAATTTCGTTCCCAACCGTCA 59.395 47.619 0.00 0.00 0.00 4.35
3209 8180 1.970092 ATTTCGTTCCCAACCGTCAA 58.030 45.000 0.00 0.00 0.00 3.18
3210 8181 1.747709 TTTCGTTCCCAACCGTCAAA 58.252 45.000 0.00 0.00 0.00 2.69
3211 8182 1.747709 TTCGTTCCCAACCGTCAAAA 58.252 45.000 0.00 0.00 0.00 2.44
3212 8183 1.015868 TCGTTCCCAACCGTCAAAAC 58.984 50.000 0.00 0.00 0.00 2.43
3213 8184 0.733729 CGTTCCCAACCGTCAAAACA 59.266 50.000 0.00 0.00 0.00 2.83
3214 8185 1.335496 CGTTCCCAACCGTCAAAACAT 59.665 47.619 0.00 0.00 0.00 2.71
3215 8186 2.603652 CGTTCCCAACCGTCAAAACATC 60.604 50.000 0.00 0.00 0.00 3.06
3216 8187 1.231221 TCCCAACCGTCAAAACATCG 58.769 50.000 0.00 0.00 0.00 3.84
3217 8188 0.948678 CCCAACCGTCAAAACATCGT 59.051 50.000 0.00 0.00 0.00 3.73
3218 8189 1.334599 CCCAACCGTCAAAACATCGTG 60.335 52.381 0.00 0.00 0.00 4.35
3219 8190 1.332375 CCAACCGTCAAAACATCGTGT 59.668 47.619 0.00 0.00 0.00 4.49
3220 8191 2.544686 CCAACCGTCAAAACATCGTGTA 59.455 45.455 0.00 0.00 0.00 2.90
3221 8192 3.187637 CCAACCGTCAAAACATCGTGTAT 59.812 43.478 0.00 0.00 0.00 2.29
3222 8193 4.319911 CCAACCGTCAAAACATCGTGTATT 60.320 41.667 0.00 0.00 0.00 1.89
3223 8194 5.209240 CAACCGTCAAAACATCGTGTATTT 58.791 37.500 0.00 0.00 0.00 1.40
3224 8195 6.364261 CAACCGTCAAAACATCGTGTATTTA 58.636 36.000 0.00 0.00 0.00 1.40
3225 8196 6.160664 ACCGTCAAAACATCGTGTATTTAG 57.839 37.500 0.00 0.00 0.00 1.85
3226 8197 5.019498 CCGTCAAAACATCGTGTATTTAGC 58.981 41.667 0.00 0.00 0.00 3.09
3227 8198 5.163893 CCGTCAAAACATCGTGTATTTAGCT 60.164 40.000 0.00 0.00 0.00 3.32
3228 8199 6.035220 CCGTCAAAACATCGTGTATTTAGCTA 59.965 38.462 0.00 0.00 0.00 3.32
3229 8200 7.111139 CGTCAAAACATCGTGTATTTAGCTAG 58.889 38.462 0.00 0.00 0.00 3.42
3230 8201 7.008901 CGTCAAAACATCGTGTATTTAGCTAGA 59.991 37.037 0.00 0.00 0.00 2.43
3231 8202 8.321716 GTCAAAACATCGTGTATTTAGCTAGAG 58.678 37.037 0.00 0.00 0.00 2.43
3232 8203 6.830114 AAACATCGTGTATTTAGCTAGAGC 57.170 37.500 0.00 0.00 42.49 4.09
3256 8227 5.666969 GCATTAGGCGTTACATGTTATCA 57.333 39.130 2.30 0.00 0.00 2.15
3257 8228 5.440685 GCATTAGGCGTTACATGTTATCAC 58.559 41.667 2.30 0.00 0.00 3.06
3258 8229 5.236478 GCATTAGGCGTTACATGTTATCACT 59.764 40.000 2.30 0.31 0.00 3.41
3259 8230 6.422701 GCATTAGGCGTTACATGTTATCACTA 59.577 38.462 2.30 0.00 0.00 2.74
3260 8231 7.568861 GCATTAGGCGTTACATGTTATCACTAC 60.569 40.741 2.30 0.00 0.00 2.73
3261 8232 5.593679 AGGCGTTACATGTTATCACTACT 57.406 39.130 2.30 0.00 0.00 2.57
3262 8233 5.348986 AGGCGTTACATGTTATCACTACTG 58.651 41.667 2.30 0.00 0.00 2.74
3263 8234 4.506654 GGCGTTACATGTTATCACTACTGG 59.493 45.833 2.30 0.00 0.00 4.00
3264 8235 5.345702 GCGTTACATGTTATCACTACTGGA 58.654 41.667 2.30 0.00 0.00 3.86
3265 8236 5.808540 GCGTTACATGTTATCACTACTGGAA 59.191 40.000 2.30 0.00 0.00 3.53
3266 8237 6.479001 GCGTTACATGTTATCACTACTGGAAT 59.521 38.462 2.30 0.00 0.00 3.01
3267 8238 7.011109 GCGTTACATGTTATCACTACTGGAATT 59.989 37.037 2.30 0.00 0.00 2.17
3268 8239 8.328146 CGTTACATGTTATCACTACTGGAATTG 58.672 37.037 2.30 0.00 0.00 2.32
3269 8240 9.378551 GTTACATGTTATCACTACTGGAATTGA 57.621 33.333 2.30 0.00 0.00 2.57
3270 8241 7.849804 ACATGTTATCACTACTGGAATTGAC 57.150 36.000 0.00 0.00 0.00 3.18
3271 8242 6.823689 ACATGTTATCACTACTGGAATTGACC 59.176 38.462 0.00 0.00 0.00 4.02
3272 8243 6.367374 TGTTATCACTACTGGAATTGACCA 57.633 37.500 0.00 0.00 38.33 4.02
3273 8244 6.170506 TGTTATCACTACTGGAATTGACCAC 58.829 40.000 0.00 0.00 35.91 4.16
3274 8245 6.013725 TGTTATCACTACTGGAATTGACCACT 60.014 38.462 0.00 0.00 35.91 4.00
3275 8246 4.537135 TCACTACTGGAATTGACCACTC 57.463 45.455 0.00 0.00 35.91 3.51
3276 8247 4.160329 TCACTACTGGAATTGACCACTCT 58.840 43.478 0.00 0.00 35.91 3.24
3277 8248 4.021104 TCACTACTGGAATTGACCACTCTG 60.021 45.833 0.00 0.00 35.91 3.35
3278 8249 3.904339 ACTACTGGAATTGACCACTCTGT 59.096 43.478 0.00 0.00 35.91 3.41
3279 8250 3.409026 ACTGGAATTGACCACTCTGTC 57.591 47.619 0.00 0.00 35.91 3.51
3280 8251 2.289072 ACTGGAATTGACCACTCTGTCG 60.289 50.000 0.00 0.00 38.11 4.35
3281 8252 1.967779 TGGAATTGACCACTCTGTCGA 59.032 47.619 0.00 0.00 38.11 4.20
3282 8253 2.029020 TGGAATTGACCACTCTGTCGAG 60.029 50.000 0.00 0.00 43.10 4.04
3290 8261 2.487428 CTCTGTCGAGTGCCCGAG 59.513 66.667 0.00 0.00 39.43 4.63
3291 8262 2.033602 TCTGTCGAGTGCCCGAGA 59.966 61.111 0.00 0.00 39.43 4.04
3292 8263 1.587043 CTCTGTCGAGTGCCCGAGAA 61.587 60.000 0.00 0.00 39.43 2.87
3293 8264 1.176619 TCTGTCGAGTGCCCGAGAAA 61.177 55.000 0.00 0.00 39.43 2.52
3294 8265 1.006571 TGTCGAGTGCCCGAGAAAC 60.007 57.895 0.00 0.00 39.43 2.78
3295 8266 1.289380 GTCGAGTGCCCGAGAAACT 59.711 57.895 0.00 0.00 39.43 2.66
3296 8267 0.733223 GTCGAGTGCCCGAGAAACTC 60.733 60.000 0.00 0.00 39.43 3.01
3318 8289 0.517316 CGAAGCCCTGAAAAACTCGG 59.483 55.000 0.00 0.00 0.00 4.63
3319 8290 0.241213 GAAGCCCTGAAAAACTCGGC 59.759 55.000 0.00 0.00 0.00 5.54
3320 8291 0.467290 AAGCCCTGAAAAACTCGGCA 60.467 50.000 0.00 0.00 0.00 5.69
3321 8292 0.467290 AGCCCTGAAAAACTCGGCAA 60.467 50.000 0.00 0.00 0.00 4.52
3322 8293 0.387565 GCCCTGAAAAACTCGGCAAA 59.612 50.000 0.00 0.00 0.00 3.68
3323 8294 1.202475 GCCCTGAAAAACTCGGCAAAA 60.202 47.619 0.00 0.00 0.00 2.44
3324 8295 2.740256 GCCCTGAAAAACTCGGCAAAAA 60.740 45.455 0.00 0.00 0.00 1.94
3325 8296 2.863740 CCCTGAAAAACTCGGCAAAAAC 59.136 45.455 0.00 0.00 0.00 2.43
3326 8297 3.430236 CCCTGAAAAACTCGGCAAAAACT 60.430 43.478 0.00 0.00 0.00 2.66
3327 8298 4.180817 CCTGAAAAACTCGGCAAAAACTT 58.819 39.130 0.00 0.00 0.00 2.66
3328 8299 4.629634 CCTGAAAAACTCGGCAAAAACTTT 59.370 37.500 0.00 0.00 0.00 2.66
3329 8300 5.121611 CCTGAAAAACTCGGCAAAAACTTTT 59.878 36.000 0.00 0.00 0.00 2.27
3330 8301 6.159419 TGAAAAACTCGGCAAAAACTTTTC 57.841 33.333 0.00 0.00 33.81 2.29
3331 8302 5.120986 TGAAAAACTCGGCAAAAACTTTTCC 59.879 36.000 0.00 0.00 32.78 3.13
3332 8303 2.485266 ACTCGGCAAAAACTTTTCCG 57.515 45.000 14.40 14.40 39.71 4.30
3333 8304 1.066454 ACTCGGCAAAAACTTTTCCGG 59.934 47.619 17.70 0.00 39.28 5.14
3334 8305 1.335496 CTCGGCAAAAACTTTTCCGGA 59.665 47.619 0.00 0.00 39.28 5.14
3335 8306 1.749634 TCGGCAAAAACTTTTCCGGAA 59.250 42.857 14.35 14.35 39.28 4.30
3336 8307 2.165845 TCGGCAAAAACTTTTCCGGAAA 59.834 40.909 25.67 25.67 39.28 3.13
3337 8308 2.283086 CGGCAAAAACTTTTCCGGAAAC 59.717 45.455 28.97 14.44 37.28 2.78
3338 8309 3.527533 GGCAAAAACTTTTCCGGAAACT 58.472 40.909 28.97 14.34 0.00 2.66
3339 8310 4.684877 GGCAAAAACTTTTCCGGAAACTA 58.315 39.130 28.97 14.81 0.00 2.24
3340 8311 4.505191 GGCAAAAACTTTTCCGGAAACTAC 59.495 41.667 28.97 12.10 0.00 2.73
3341 8312 5.345702 GCAAAAACTTTTCCGGAAACTACT 58.654 37.500 28.97 11.58 0.00 2.57
3342 8313 5.457799 GCAAAAACTTTTCCGGAAACTACTC 59.542 40.000 28.97 9.88 0.00 2.59
3343 8314 6.679638 GCAAAAACTTTTCCGGAAACTACTCT 60.680 38.462 28.97 10.16 0.00 3.24
3344 8315 6.615264 AAAACTTTTCCGGAAACTACTCTC 57.385 37.500 28.97 0.00 0.00 3.20
3345 8316 3.910648 ACTTTTCCGGAAACTACTCTCG 58.089 45.455 28.97 11.81 0.00 4.04
3346 8317 3.251571 CTTTTCCGGAAACTACTCTCGG 58.748 50.000 28.97 7.25 41.80 4.63
3347 8318 0.529378 TTCCGGAAACTACTCTCGGC 59.471 55.000 16.28 0.00 40.42 5.54
3348 8319 0.609957 TCCGGAAACTACTCTCGGCA 60.610 55.000 0.00 0.00 40.42 5.69
3349 8320 0.179134 CCGGAAACTACTCTCGGCAG 60.179 60.000 0.00 0.00 34.17 4.85
3350 8321 0.809385 CGGAAACTACTCTCGGCAGA 59.191 55.000 0.00 0.00 0.00 4.26
3351 8322 1.201647 CGGAAACTACTCTCGGCAGAA 59.798 52.381 0.00 0.00 0.00 3.02
3352 8323 2.732597 CGGAAACTACTCTCGGCAGAAG 60.733 54.545 0.00 0.00 0.00 2.85
3353 8324 2.417515 GGAAACTACTCTCGGCAGAAGG 60.418 54.545 0.00 0.00 0.00 3.46
3354 8325 0.533032 AACTACTCTCGGCAGAAGGC 59.467 55.000 0.00 0.00 43.74 4.35
3363 8334 4.147701 GCAGAAGGCATATGGCGT 57.852 55.556 22.17 19.82 46.16 5.68
3364 8335 3.305709 GCAGAAGGCATATGGCGTA 57.694 52.632 22.17 0.00 46.16 4.42
3365 8336 0.868406 GCAGAAGGCATATGGCGTAC 59.132 55.000 22.17 16.71 46.16 3.67
3366 8337 1.810031 GCAGAAGGCATATGGCGTACA 60.810 52.381 22.17 0.00 46.16 2.90
3367 8338 1.867233 CAGAAGGCATATGGCGTACAC 59.133 52.381 22.17 13.02 46.16 2.90
3368 8339 1.202651 AGAAGGCATATGGCGTACACC 60.203 52.381 22.17 8.34 46.16 4.16
3369 8340 0.179029 AAGGCATATGGCGTACACCC 60.179 55.000 22.17 3.78 46.16 4.61
3370 8341 1.599797 GGCATATGGCGTACACCCC 60.600 63.158 14.11 0.00 46.16 4.95
3371 8342 1.450211 GCATATGGCGTACACCCCT 59.550 57.895 4.56 0.00 0.00 4.79
3372 8343 0.602905 GCATATGGCGTACACCCCTC 60.603 60.000 4.56 0.00 0.00 4.30
3373 8344 1.048601 CATATGGCGTACACCCCTCT 58.951 55.000 0.00 0.00 0.00 3.69
3374 8345 1.048601 ATATGGCGTACACCCCTCTG 58.951 55.000 0.00 0.00 0.00 3.35
3375 8346 1.046472 TATGGCGTACACCCCTCTGG 61.046 60.000 0.00 0.00 41.37 3.86
3376 8347 4.468689 GGCGTACACCCCTCTGGC 62.469 72.222 0.00 0.00 37.83 4.85
3377 8348 3.702048 GCGTACACCCCTCTGGCA 61.702 66.667 0.00 0.00 37.83 4.92
3378 8349 3.065306 CGTACACCCCTCTGGCAA 58.935 61.111 0.00 0.00 37.83 4.52
3379 8350 1.373435 CGTACACCCCTCTGGCAAA 59.627 57.895 0.00 0.00 37.83 3.68
3380 8351 0.953960 CGTACACCCCTCTGGCAAAC 60.954 60.000 0.00 0.00 37.83 2.93
3381 8352 0.109723 GTACACCCCTCTGGCAAACA 59.890 55.000 0.00 0.00 37.83 2.83
3393 8364 2.733956 TGGCAAACAGAACTTTGTCCT 58.266 42.857 0.00 0.00 35.28 3.85
3394 8365 2.426738 TGGCAAACAGAACTTTGTCCTG 59.573 45.455 0.00 0.00 35.28 3.86
3395 8366 2.427095 GGCAAACAGAACTTTGTCCTGT 59.573 45.455 0.00 0.00 42.34 4.00
3396 8367 3.438360 GCAAACAGAACTTTGTCCTGTG 58.562 45.455 0.00 0.00 40.61 3.66
3397 8368 3.438360 CAAACAGAACTTTGTCCTGTGC 58.562 45.455 0.00 0.00 40.61 4.57
3398 8369 1.680338 ACAGAACTTTGTCCTGTGCC 58.320 50.000 0.00 0.00 39.43 5.01
3399 8370 0.588252 CAGAACTTTGTCCTGTGCCG 59.412 55.000 0.00 0.00 0.00 5.69
3400 8371 0.180406 AGAACTTTGTCCTGTGCCGT 59.820 50.000 0.00 0.00 0.00 5.68
3401 8372 1.414919 AGAACTTTGTCCTGTGCCGTA 59.585 47.619 0.00 0.00 0.00 4.02
3402 8373 2.038557 AGAACTTTGTCCTGTGCCGTAT 59.961 45.455 0.00 0.00 0.00 3.06
3403 8374 1.808411 ACTTTGTCCTGTGCCGTATG 58.192 50.000 0.00 0.00 0.00 2.39
3404 8375 1.071699 ACTTTGTCCTGTGCCGTATGT 59.928 47.619 0.00 0.00 0.00 2.29
3405 8376 1.732259 CTTTGTCCTGTGCCGTATGTC 59.268 52.381 0.00 0.00 0.00 3.06
3406 8377 0.389296 TTGTCCTGTGCCGTATGTCG 60.389 55.000 0.00 0.00 39.52 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
286 287 1.136305 GGTTCATCGTCCCGAGAATCA 59.864 52.381 0.00 0.00 39.91 2.57
344 345 1.831286 CATGATGGCCTGCTTCCCC 60.831 63.158 3.32 0.00 0.00 4.81
428 429 5.930135 AGCTTAAGAAAGACAAACTCCTGA 58.070 37.500 6.67 0.00 34.37 3.86
494 495 6.163135 ACCACTCATCATACTAGTAAAGCC 57.837 41.667 6.70 0.00 0.00 4.35
554 556 3.496331 CTTCTCCAGGTGGGCTTAAAAA 58.504 45.455 0.00 0.00 36.21 1.94
559 561 1.849823 AGCTTCTCCAGGTGGGCTT 60.850 57.895 0.00 0.00 36.21 4.35
592 594 9.706691 TGCTCTTATTATATTTCTTTACGGAGG 57.293 33.333 0.00 0.00 0.00 4.30
627 629 5.476254 AGAGCGTTTAGACCACTAAAGTAGT 59.524 40.000 0.00 0.00 45.42 2.73
628 630 5.952033 AGAGCGTTTAGACCACTAAAGTAG 58.048 41.667 0.00 0.00 45.42 2.57
629 631 5.972107 AGAGCGTTTAGACCACTAAAGTA 57.028 39.130 0.00 0.00 45.42 2.24
630 632 4.868314 AGAGCGTTTAGACCACTAAAGT 57.132 40.909 0.00 0.00 45.42 2.66
631 633 9.530633 AATATAAGAGCGTTTAGACCACTAAAG 57.469 33.333 0.00 0.00 45.42 1.85
658 660 9.828039 TCGTAAGATGTACTCTCTCTGTAAATA 57.172 33.333 0.00 0.00 45.01 1.40
659 661 8.734218 TCGTAAGATGTACTCTCTCTGTAAAT 57.266 34.615 0.00 0.00 45.01 1.40
696 698 3.899052 CCAAGAATGGGCATCACATTT 57.101 42.857 0.00 0.00 43.51 2.32
708 710 1.064166 AGGACATCAGGCCCAAGAATG 60.064 52.381 0.00 0.00 0.00 2.67
766 768 6.015519 CCAAAAAGTTGTGAAGGGATCATACA 60.016 38.462 0.00 0.00 40.97 2.29
774 790 5.534654 TGTCTATCCAAAAAGTTGTGAAGGG 59.465 40.000 0.00 0.00 32.40 3.95
781 797 5.299279 ACAGTGGTGTCTATCCAAAAAGTTG 59.701 40.000 0.00 0.00 36.68 3.16
856 928 6.630443 GCGAAACATGCTGACTAAATAGAATG 59.370 38.462 0.00 0.00 0.00 2.67
857 929 6.316140 TGCGAAACATGCTGACTAAATAGAAT 59.684 34.615 0.00 0.00 0.00 2.40
862 934 4.970662 ATGCGAAACATGCTGACTAAAT 57.029 36.364 0.00 0.00 37.70 1.40
863 935 4.764679 AATGCGAAACATGCTGACTAAA 57.235 36.364 0.00 0.00 39.60 1.85
865 937 3.501828 ACAAATGCGAAACATGCTGACTA 59.498 39.130 0.00 0.00 39.60 2.59
867 939 2.406024 CACAAATGCGAAACATGCTGAC 59.594 45.455 0.00 0.00 39.60 3.51
874 946 2.946329 ACTACACCACAAATGCGAAACA 59.054 40.909 0.00 0.00 0.00 2.83
875 947 3.619233 ACTACACCACAAATGCGAAAC 57.381 42.857 0.00 0.00 0.00 2.78
876 948 5.752892 TTAACTACACCACAAATGCGAAA 57.247 34.783 0.00 0.00 0.00 3.46
877 949 5.752892 TTTAACTACACCACAAATGCGAA 57.247 34.783 0.00 0.00 0.00 4.70
878 950 5.470437 TCATTTAACTACACCACAAATGCGA 59.530 36.000 0.00 0.00 36.82 5.10
879 951 5.694816 TCATTTAACTACACCACAAATGCG 58.305 37.500 0.00 0.00 36.82 4.73
881 953 7.870826 TGTCTCATTTAACTACACCACAAATG 58.129 34.615 0.00 0.00 37.74 2.32
882 954 8.635765 ATGTCTCATTTAACTACACCACAAAT 57.364 30.769 0.00 0.00 0.00 2.32
883 955 7.717436 TGATGTCTCATTTAACTACACCACAAA 59.283 33.333 0.00 0.00 0.00 2.83
884 956 7.172532 GTGATGTCTCATTTAACTACACCACAA 59.827 37.037 0.00 0.00 32.98 3.33
886 958 6.874134 AGTGATGTCTCATTTAACTACACCAC 59.126 38.462 0.00 0.00 32.98 4.16
888 960 6.183360 GCAGTGATGTCTCATTTAACTACACC 60.183 42.308 0.00 0.00 32.98 4.16
889 961 6.368791 TGCAGTGATGTCTCATTTAACTACAC 59.631 38.462 0.00 0.00 32.98 2.90
890 962 6.463360 TGCAGTGATGTCTCATTTAACTACA 58.537 36.000 0.00 0.00 32.98 2.74
891 963 6.968131 TGCAGTGATGTCTCATTTAACTAC 57.032 37.500 0.00 0.00 32.98 2.73
892 964 7.010460 CGAATGCAGTGATGTCTCATTTAACTA 59.990 37.037 0.00 0.00 32.98 2.24
893 965 6.183360 CGAATGCAGTGATGTCTCATTTAACT 60.183 38.462 0.00 0.00 32.98 2.24
895 967 5.643348 ACGAATGCAGTGATGTCTCATTTAA 59.357 36.000 0.00 0.00 32.98 1.52
897 969 4.005650 ACGAATGCAGTGATGTCTCATTT 58.994 39.130 0.00 0.00 32.98 2.32
898 970 3.373130 CACGAATGCAGTGATGTCTCATT 59.627 43.478 0.00 0.00 41.83 2.57
899 971 2.934553 CACGAATGCAGTGATGTCTCAT 59.065 45.455 0.00 0.00 41.83 2.90
902 974 2.071540 CACACGAATGCAGTGATGTCT 58.928 47.619 11.19 0.00 41.83 3.41
903 975 1.800586 ACACACGAATGCAGTGATGTC 59.199 47.619 11.19 0.00 41.83 3.06
905 977 2.975410 AACACACGAATGCAGTGATG 57.025 45.000 11.19 8.11 41.83 3.07
906 978 2.416547 GCTAACACACGAATGCAGTGAT 59.583 45.455 11.19 1.75 41.83 3.06
907 979 1.798223 GCTAACACACGAATGCAGTGA 59.202 47.619 11.19 0.00 41.83 3.41
909 981 0.790207 CGCTAACACACGAATGCAGT 59.210 50.000 0.00 0.00 0.00 4.40
910 982 0.790207 ACGCTAACACACGAATGCAG 59.210 50.000 0.00 0.00 0.00 4.41
914 986 2.334838 GGAGAACGCTAACACACGAAT 58.665 47.619 0.00 0.00 0.00 3.34
915 987 1.774639 GGAGAACGCTAACACACGAA 58.225 50.000 0.00 0.00 0.00 3.85
917 989 2.059575 CGGAGAACGCTAACACACG 58.940 57.895 0.00 0.00 34.82 4.49
929 1001 2.052104 TGGAGATGCGAGCGGAGAA 61.052 57.895 0.00 0.00 0.00 2.87
931 1003 2.279120 GTGGAGATGCGAGCGGAG 60.279 66.667 0.00 0.00 0.00 4.63
932 1004 2.755876 AGTGGAGATGCGAGCGGA 60.756 61.111 0.00 0.00 0.00 5.54
933 1005 2.279120 GAGTGGAGATGCGAGCGG 60.279 66.667 0.00 0.00 0.00 5.52
935 1007 2.959071 GCGAGTGGAGATGCGAGC 60.959 66.667 0.00 0.00 0.00 5.03
936 1008 0.938637 GATGCGAGTGGAGATGCGAG 60.939 60.000 0.00 0.00 0.00 5.03
937 1009 1.066422 GATGCGAGTGGAGATGCGA 59.934 57.895 0.00 0.00 0.00 5.10
938 1010 0.807275 TTGATGCGAGTGGAGATGCG 60.807 55.000 0.00 0.00 0.00 4.73
939 1011 0.935898 CTTGATGCGAGTGGAGATGC 59.064 55.000 0.00 0.00 0.00 3.91
940 1012 2.159128 ACTCTTGATGCGAGTGGAGATG 60.159 50.000 0.00 0.00 40.07 2.90
942 1014 1.550327 ACTCTTGATGCGAGTGGAGA 58.450 50.000 0.00 0.00 40.07 3.71
959 5571 4.065281 GTGTCCGGTAGCGGCACT 62.065 66.667 33.61 0.00 35.11 4.40
967 5579 1.069022 CGTTCTTCTTCGTGTCCGGTA 60.069 52.381 0.00 0.00 33.95 4.02
968 5580 0.318445 CGTTCTTCTTCGTGTCCGGT 60.318 55.000 0.00 0.00 33.95 5.28
996 5619 5.712152 ATTTCCTCACCAAAGTCATCAAC 57.288 39.130 0.00 0.00 0.00 3.18
1004 5627 5.520376 ACAGTCAAATTTCCTCACCAAAG 57.480 39.130 0.00 0.00 0.00 2.77
1033 5656 3.592059 CGGATCCGTCTTGGTTTCTAAA 58.408 45.455 26.35 0.00 39.52 1.85
1108 5743 5.612261 ACAGGAGGGTTTAGGGTTTTACTTA 59.388 40.000 0.00 0.00 0.00 2.24
1141 5783 4.099633 TCCTGTTGAGGATGAGAATCTGT 58.900 43.478 0.00 0.00 44.13 3.41
1169 5854 1.846541 GCTAGCTCTCGATGTGGTTC 58.153 55.000 7.70 0.00 0.00 3.62
1182 5868 0.755686 CCCTTCCATCTTCGCTAGCT 59.244 55.000 13.93 0.00 0.00 3.32
1183 5869 0.250081 CCCCTTCCATCTTCGCTAGC 60.250 60.000 4.06 4.06 0.00 3.42
1184 5870 1.342819 CTCCCCTTCCATCTTCGCTAG 59.657 57.143 0.00 0.00 0.00 3.42
1185 5871 1.063190 TCTCCCCTTCCATCTTCGCTA 60.063 52.381 0.00 0.00 0.00 4.26
1190 5876 0.325671 TCGCTCTCCCCTTCCATCTT 60.326 55.000 0.00 0.00 0.00 2.40
1438 6124 1.803289 GAACTGCGGGGATTGCTTC 59.197 57.895 0.00 0.00 0.00 3.86
1635 6354 3.187058 CCGTGTATGTTGCAGGGC 58.813 61.111 0.00 0.00 35.51 5.19
1655 6374 1.842381 CTGGGAACTGGTGGGAGGAC 61.842 65.000 0.00 0.00 0.00 3.85
1674 6393 2.475466 CCGTCATGGATGCTGGTGC 61.475 63.158 0.00 0.00 42.00 5.01
1862 6602 9.017669 GTCATGAGAAATCAAACTATTCAATGC 57.982 33.333 0.00 0.00 0.00 3.56
2081 6834 2.872858 GGCCTTTCTTATCCGTCATGTC 59.127 50.000 0.00 0.00 0.00 3.06
2082 6835 2.505819 AGGCCTTTCTTATCCGTCATGT 59.494 45.455 0.00 0.00 0.00 3.21
2083 6836 3.134458 GAGGCCTTTCTTATCCGTCATG 58.866 50.000 6.77 0.00 0.00 3.07
2158 6914 9.599866 TCGTCAAACATTCTAGTTGATATCATT 57.400 29.630 6.17 0.91 0.00 2.57
2195 6951 5.326200 ACTTCACGTACCATAAGAGAAGG 57.674 43.478 10.16 0.00 38.45 3.46
2198 6954 4.081862 CCCAACTTCACGTACCATAAGAGA 60.082 45.833 0.00 0.00 0.00 3.10
2211 6970 2.076863 CTGAATCGACCCCAACTTCAC 58.923 52.381 0.00 0.00 0.00 3.18
2311 7073 8.809159 CATACAAGTATCTATCCTCTTGTGTG 57.191 38.462 16.26 15.62 46.16 3.82
2418 7192 4.440112 GGACCAACAAGAGACAAAACCTTG 60.440 45.833 0.00 0.00 42.04 3.61
2426 7208 1.068588 CAGACGGACCAACAAGAGACA 59.931 52.381 0.00 0.00 0.00 3.41
2438 7220 1.021968 AAACAAAGCACCAGACGGAC 58.978 50.000 0.00 0.00 35.59 4.79
2446 7228 6.387041 AACTAGGTAGAAAAACAAAGCACC 57.613 37.500 0.00 0.00 0.00 5.01
2463 7245 7.502226 TCAAATATTAGCACAATGGGAACTAGG 59.498 37.037 0.00 0.00 0.00 3.02
2488 7275 8.142994 ACATGGTAAACATCGTAAATGAGATC 57.857 34.615 0.00 0.00 37.84 2.75
2661 7527 1.841302 TACTGGGTGGCAGCCAAGAG 61.841 60.000 35.15 26.46 46.28 2.85
2777 7738 6.380995 TGACGACGTACACAATACTAATGTT 58.619 36.000 0.00 0.00 0.00 2.71
2778 7739 5.941733 TGACGACGTACACAATACTAATGT 58.058 37.500 0.00 0.00 0.00 2.71
2815 7776 9.248291 GTACACAGATGTTCAAATCAAAAACAT 57.752 29.630 0.00 0.00 44.14 2.71
3052 8023 6.380095 TTTAAAGTCTTACAACCATGCGTT 57.620 33.333 0.00 0.00 33.90 4.84
3055 8026 7.822658 TGGTATTTAAAGTCTTACAACCATGC 58.177 34.615 0.00 0.00 29.85 4.06
3062 8033 9.787435 AGTCAACATGGTATTTAAAGTCTTACA 57.213 29.630 0.00 0.00 0.00 2.41
3066 8037 8.932791 CGTAAGTCAACATGGTATTTAAAGTCT 58.067 33.333 0.00 0.00 0.00 3.24
3067 8038 7.691050 GCGTAAGTCAACATGGTATTTAAAGTC 59.309 37.037 0.00 0.00 41.68 3.01
3068 8039 7.173562 TGCGTAAGTCAACATGGTATTTAAAGT 59.826 33.333 0.00 0.00 41.68 2.66
3069 8040 7.523219 TGCGTAAGTCAACATGGTATTTAAAG 58.477 34.615 0.00 0.00 41.68 1.85
3070 8041 7.436430 TGCGTAAGTCAACATGGTATTTAAA 57.564 32.000 0.00 0.00 41.68 1.52
3071 8042 6.402766 GCTGCGTAAGTCAACATGGTATTTAA 60.403 38.462 0.00 0.00 41.68 1.52
3072 8043 5.064198 GCTGCGTAAGTCAACATGGTATTTA 59.936 40.000 0.00 0.00 41.68 1.40
3073 8044 4.142687 GCTGCGTAAGTCAACATGGTATTT 60.143 41.667 0.00 0.00 41.68 1.40
3074 8045 3.374058 GCTGCGTAAGTCAACATGGTATT 59.626 43.478 0.00 0.00 41.68 1.89
3075 8046 2.936498 GCTGCGTAAGTCAACATGGTAT 59.064 45.455 0.00 0.00 41.68 2.73
3076 8047 2.028476 AGCTGCGTAAGTCAACATGGTA 60.028 45.455 0.00 0.00 41.68 3.25
3077 8048 1.156736 GCTGCGTAAGTCAACATGGT 58.843 50.000 0.00 0.00 41.68 3.55
3078 8049 1.394917 GAGCTGCGTAAGTCAACATGG 59.605 52.381 0.00 0.00 41.68 3.66
3079 8050 2.341257 AGAGCTGCGTAAGTCAACATG 58.659 47.619 0.00 0.00 41.68 3.21
3080 8051 2.738846 CAAGAGCTGCGTAAGTCAACAT 59.261 45.455 0.00 0.00 41.68 2.71
3081 8052 2.135139 CAAGAGCTGCGTAAGTCAACA 58.865 47.619 0.00 0.00 41.68 3.33
3082 8053 1.136224 GCAAGAGCTGCGTAAGTCAAC 60.136 52.381 0.00 0.00 42.37 3.18
3083 8054 1.148310 GCAAGAGCTGCGTAAGTCAA 58.852 50.000 0.00 0.00 42.37 3.18
3084 8055 2.827604 GCAAGAGCTGCGTAAGTCA 58.172 52.632 0.00 0.00 42.37 3.41
3093 8064 5.311265 TGATATATGAAAGGGCAAGAGCTG 58.689 41.667 0.00 0.00 41.70 4.24
3094 8065 5.514484 CCTGATATATGAAAGGGCAAGAGCT 60.514 44.000 0.00 0.00 41.70 4.09
3095 8066 4.699257 CCTGATATATGAAAGGGCAAGAGC 59.301 45.833 0.00 0.00 41.10 4.09
3096 8067 5.704515 CACCTGATATATGAAAGGGCAAGAG 59.295 44.000 9.45 0.00 33.87 2.85
3097 8068 5.369404 TCACCTGATATATGAAAGGGCAAGA 59.631 40.000 9.45 1.96 33.87 3.02
3098 8069 5.624159 TCACCTGATATATGAAAGGGCAAG 58.376 41.667 9.45 0.26 33.87 4.01
3099 8070 5.624159 CTCACCTGATATATGAAAGGGCAA 58.376 41.667 9.45 0.00 33.87 4.52
3100 8071 4.505566 GCTCACCTGATATATGAAAGGGCA 60.506 45.833 9.45 0.00 33.87 5.36
3101 8072 4.006319 GCTCACCTGATATATGAAAGGGC 58.994 47.826 9.45 2.17 33.87 5.19
3102 8073 5.495926 AGCTCACCTGATATATGAAAGGG 57.504 43.478 9.45 0.00 33.87 3.95
3103 8074 6.070881 AGCTAGCTCACCTGATATATGAAAGG 60.071 42.308 12.68 0.00 35.82 3.11
3104 8075 6.812656 CAGCTAGCTCACCTGATATATGAAAG 59.187 42.308 16.15 0.00 0.00 2.62
3105 8076 6.295518 CCAGCTAGCTCACCTGATATATGAAA 60.296 42.308 16.15 0.00 0.00 2.69
3106 8077 5.186603 CCAGCTAGCTCACCTGATATATGAA 59.813 44.000 16.15 0.00 0.00 2.57
3107 8078 4.708909 CCAGCTAGCTCACCTGATATATGA 59.291 45.833 16.15 0.00 0.00 2.15
3108 8079 4.708909 TCCAGCTAGCTCACCTGATATATG 59.291 45.833 16.15 0.00 0.00 1.78
3109 8080 4.940483 TCCAGCTAGCTCACCTGATATAT 58.060 43.478 16.15 0.00 0.00 0.86
3110 8081 4.388577 TCCAGCTAGCTCACCTGATATA 57.611 45.455 16.15 0.00 0.00 0.86
3111 8082 3.251016 TCCAGCTAGCTCACCTGATAT 57.749 47.619 16.15 0.00 0.00 1.63
3112 8083 2.755952 TCCAGCTAGCTCACCTGATA 57.244 50.000 16.15 0.00 0.00 2.15
3113 8084 1.871418 TTCCAGCTAGCTCACCTGAT 58.129 50.000 16.15 0.00 0.00 2.90
3114 8085 1.644509 TTTCCAGCTAGCTCACCTGA 58.355 50.000 16.15 3.83 0.00 3.86
3115 8086 2.286872 CATTTCCAGCTAGCTCACCTG 58.713 52.381 16.15 3.84 0.00 4.00
3116 8087 1.407989 GCATTTCCAGCTAGCTCACCT 60.408 52.381 16.15 0.00 0.00 4.00
3117 8088 1.020437 GCATTTCCAGCTAGCTCACC 58.980 55.000 16.15 0.00 0.00 4.02
3118 8089 1.669779 CTGCATTTCCAGCTAGCTCAC 59.330 52.381 16.15 0.00 0.00 3.51
3119 8090 1.407851 CCTGCATTTCCAGCTAGCTCA 60.408 52.381 16.15 7.07 0.00 4.26
3120 8091 1.307097 CCTGCATTTCCAGCTAGCTC 58.693 55.000 16.15 1.90 0.00 4.09
3121 8092 0.750911 GCCTGCATTTCCAGCTAGCT 60.751 55.000 12.68 12.68 0.00 3.32
3122 8093 1.033746 TGCCTGCATTTCCAGCTAGC 61.034 55.000 6.62 6.62 0.00 3.42
3123 8094 1.337071 CATGCCTGCATTTCCAGCTAG 59.663 52.381 0.97 0.00 33.90 3.42
3124 8095 1.064537 TCATGCCTGCATTTCCAGCTA 60.065 47.619 0.97 0.00 33.90 3.32
3125 8096 0.323999 TCATGCCTGCATTTCCAGCT 60.324 50.000 0.97 0.00 33.90 4.24
3126 8097 0.102481 CTCATGCCTGCATTTCCAGC 59.898 55.000 0.97 0.00 33.90 4.85
3127 8098 1.471119 ACTCATGCCTGCATTTCCAG 58.529 50.000 0.97 0.00 33.90 3.86
3128 8099 2.290832 TGTACTCATGCCTGCATTTCCA 60.291 45.455 0.97 0.00 33.90 3.53
3129 8100 2.368439 TGTACTCATGCCTGCATTTCC 58.632 47.619 0.97 0.00 33.90 3.13
3130 8101 3.961182 CATGTACTCATGCCTGCATTTC 58.039 45.455 0.97 0.00 43.66 2.17
3142 8113 9.836864 ACATATATGAAAGAAAGCATGTACTCA 57.163 29.630 19.63 0.00 0.00 3.41
3163 8134 8.812972 TGTTCTTCAACTCCTGTAAGTACATAT 58.187 33.333 0.00 0.00 32.84 1.78
3164 8135 8.185506 TGTTCTTCAACTCCTGTAAGTACATA 57.814 34.615 0.00 0.00 32.84 2.29
3165 8136 7.062749 TGTTCTTCAACTCCTGTAAGTACAT 57.937 36.000 0.00 0.00 32.84 2.29
3166 8137 6.474140 TGTTCTTCAACTCCTGTAAGTACA 57.526 37.500 0.00 0.00 33.17 2.90
3167 8138 7.964604 ATTGTTCTTCAACTCCTGTAAGTAC 57.035 36.000 0.00 0.00 38.97 2.73
3168 8139 8.974060 AAATTGTTCTTCAACTCCTGTAAGTA 57.026 30.769 0.00 0.00 38.97 2.24
3169 8140 7.254795 CGAAATTGTTCTTCAACTCCTGTAAGT 60.255 37.037 0.00 0.00 38.97 2.24
3170 8141 7.072030 CGAAATTGTTCTTCAACTCCTGTAAG 58.928 38.462 0.00 0.00 38.97 2.34
3171 8142 6.540914 ACGAAATTGTTCTTCAACTCCTGTAA 59.459 34.615 0.00 0.00 38.97 2.41
3172 8143 6.053005 ACGAAATTGTTCTTCAACTCCTGTA 58.947 36.000 0.00 0.00 38.97 2.74
3173 8144 4.881850 ACGAAATTGTTCTTCAACTCCTGT 59.118 37.500 0.00 0.00 38.97 4.00
3174 8145 5.424121 ACGAAATTGTTCTTCAACTCCTG 57.576 39.130 0.00 0.00 38.97 3.86
3175 8146 5.008712 GGAACGAAATTGTTCTTCAACTCCT 59.991 40.000 12.12 0.00 45.90 3.69
3176 8147 5.212934 GGAACGAAATTGTTCTTCAACTCC 58.787 41.667 12.12 0.00 45.90 3.85
3177 8148 5.212934 GGGAACGAAATTGTTCTTCAACTC 58.787 41.667 12.12 0.00 45.90 3.01
3178 8149 4.642885 TGGGAACGAAATTGTTCTTCAACT 59.357 37.500 12.12 0.00 45.90 3.16
3179 8150 4.927422 TGGGAACGAAATTGTTCTTCAAC 58.073 39.130 12.12 0.00 45.90 3.18
3180 8151 5.344884 GTTGGGAACGAAATTGTTCTTCAA 58.655 37.500 12.12 12.95 45.90 2.69
3181 8152 4.202070 GGTTGGGAACGAAATTGTTCTTCA 60.202 41.667 12.12 8.85 45.90 3.02
3182 8153 4.295870 GGTTGGGAACGAAATTGTTCTTC 58.704 43.478 12.12 6.88 45.90 2.87
3183 8154 3.243267 CGGTTGGGAACGAAATTGTTCTT 60.243 43.478 12.12 0.00 45.90 2.52
3184 8155 2.292292 CGGTTGGGAACGAAATTGTTCT 59.708 45.455 12.12 0.00 45.90 3.01
3185 8156 2.033675 ACGGTTGGGAACGAAATTGTTC 59.966 45.455 5.16 5.16 45.91 3.18
3186 8157 2.025898 ACGGTTGGGAACGAAATTGTT 58.974 42.857 0.00 0.00 34.02 2.83
3187 8158 1.605232 GACGGTTGGGAACGAAATTGT 59.395 47.619 0.00 0.00 0.00 2.71
3188 8159 1.604755 TGACGGTTGGGAACGAAATTG 59.395 47.619 0.00 0.00 0.00 2.32
3189 8160 1.970092 TGACGGTTGGGAACGAAATT 58.030 45.000 0.00 0.00 0.00 1.82
3190 8161 1.970092 TTGACGGTTGGGAACGAAAT 58.030 45.000 0.00 0.00 0.00 2.17
3191 8162 1.747709 TTTGACGGTTGGGAACGAAA 58.252 45.000 0.00 0.00 0.00 3.46
3192 8163 1.401199 GTTTTGACGGTTGGGAACGAA 59.599 47.619 0.00 0.00 0.00 3.85
3193 8164 1.015868 GTTTTGACGGTTGGGAACGA 58.984 50.000 0.00 0.00 0.00 3.85
3194 8165 0.733729 TGTTTTGACGGTTGGGAACG 59.266 50.000 0.00 0.00 0.00 3.95
3195 8166 2.603652 CGATGTTTTGACGGTTGGGAAC 60.604 50.000 0.00 0.00 0.00 3.62
3196 8167 1.604755 CGATGTTTTGACGGTTGGGAA 59.395 47.619 0.00 0.00 0.00 3.97
3197 8168 1.231221 CGATGTTTTGACGGTTGGGA 58.769 50.000 0.00 0.00 0.00 4.37
3198 8169 0.948678 ACGATGTTTTGACGGTTGGG 59.051 50.000 0.00 0.00 0.00 4.12
3199 8170 1.332375 ACACGATGTTTTGACGGTTGG 59.668 47.619 0.00 0.00 0.00 3.77
3200 8171 2.748461 ACACGATGTTTTGACGGTTG 57.252 45.000 0.00 0.00 0.00 3.77
3201 8172 5.427036 AAATACACGATGTTTTGACGGTT 57.573 34.783 0.00 0.00 0.00 4.44
3202 8173 5.390145 GCTAAATACACGATGTTTTGACGGT 60.390 40.000 0.00 0.00 0.00 4.83
3203 8174 5.019498 GCTAAATACACGATGTTTTGACGG 58.981 41.667 0.00 0.00 0.00 4.79
3204 8175 5.854157 AGCTAAATACACGATGTTTTGACG 58.146 37.500 0.00 0.00 0.00 4.35
3205 8176 8.181487 TCTAGCTAAATACACGATGTTTTGAC 57.819 34.615 0.00 0.00 0.00 3.18
3206 8177 7.010183 GCTCTAGCTAAATACACGATGTTTTGA 59.990 37.037 0.00 0.00 38.21 2.69
3207 8178 7.119997 GCTCTAGCTAAATACACGATGTTTTG 58.880 38.462 0.00 0.00 38.21 2.44
3208 8179 7.235430 GCTCTAGCTAAATACACGATGTTTT 57.765 36.000 0.00 0.00 38.21 2.43
3209 8180 6.830114 GCTCTAGCTAAATACACGATGTTT 57.170 37.500 0.00 0.00 38.21 2.83
3225 8196 0.249657 ACGCCTAATGCAGCTCTAGC 60.250 55.000 0.00 0.00 41.33 3.42
3226 8197 2.231215 AACGCCTAATGCAGCTCTAG 57.769 50.000 0.00 0.00 41.33 2.43
3227 8198 2.429250 TGTAACGCCTAATGCAGCTCTA 59.571 45.455 0.00 0.00 41.33 2.43
3228 8199 1.207089 TGTAACGCCTAATGCAGCTCT 59.793 47.619 0.00 0.00 41.33 4.09
3229 8200 1.651987 TGTAACGCCTAATGCAGCTC 58.348 50.000 0.00 0.00 41.33 4.09
3230 8201 1.942657 CATGTAACGCCTAATGCAGCT 59.057 47.619 0.00 0.00 41.33 4.24
3231 8202 1.670811 ACATGTAACGCCTAATGCAGC 59.329 47.619 0.00 0.00 41.33 5.25
3232 8203 5.236263 TGATAACATGTAACGCCTAATGCAG 59.764 40.000 0.00 0.00 41.33 4.41
3233 8204 5.007234 GTGATAACATGTAACGCCTAATGCA 59.993 40.000 0.00 0.00 41.33 3.96
3234 8205 5.236478 AGTGATAACATGTAACGCCTAATGC 59.764 40.000 0.00 0.00 0.00 3.56
3235 8206 6.844696 AGTGATAACATGTAACGCCTAATG 57.155 37.500 0.00 0.00 0.00 1.90
3236 8207 7.652105 CAGTAGTGATAACATGTAACGCCTAAT 59.348 37.037 0.00 0.00 0.00 1.73
3237 8208 6.976349 CAGTAGTGATAACATGTAACGCCTAA 59.024 38.462 0.00 0.00 0.00 2.69
3238 8209 6.460537 CCAGTAGTGATAACATGTAACGCCTA 60.461 42.308 0.00 0.00 0.00 3.93
3239 8210 5.348986 CAGTAGTGATAACATGTAACGCCT 58.651 41.667 0.00 0.00 0.00 5.52
3240 8211 4.506654 CCAGTAGTGATAACATGTAACGCC 59.493 45.833 0.00 0.00 0.00 5.68
3241 8212 5.345702 TCCAGTAGTGATAACATGTAACGC 58.654 41.667 0.00 0.46 0.00 4.84
3242 8213 8.328146 CAATTCCAGTAGTGATAACATGTAACG 58.672 37.037 0.00 0.00 0.00 3.18
3243 8214 9.378551 TCAATTCCAGTAGTGATAACATGTAAC 57.621 33.333 0.00 0.00 0.00 2.50
3244 8215 9.378551 GTCAATTCCAGTAGTGATAACATGTAA 57.621 33.333 0.00 0.00 0.00 2.41
3245 8216 7.985184 GGTCAATTCCAGTAGTGATAACATGTA 59.015 37.037 0.00 0.00 0.00 2.29
3246 8217 6.823689 GGTCAATTCCAGTAGTGATAACATGT 59.176 38.462 0.00 0.00 0.00 3.21
3247 8218 6.823182 TGGTCAATTCCAGTAGTGATAACATG 59.177 38.462 0.00 0.00 33.19 3.21
3248 8219 6.823689 GTGGTCAATTCCAGTAGTGATAACAT 59.176 38.462 0.00 0.00 38.23 2.71
3249 8220 6.013725 AGTGGTCAATTCCAGTAGTGATAACA 60.014 38.462 0.00 0.00 39.12 2.41
3250 8221 6.407202 AGTGGTCAATTCCAGTAGTGATAAC 58.593 40.000 0.00 0.00 39.12 1.89
3251 8222 6.440647 AGAGTGGTCAATTCCAGTAGTGATAA 59.559 38.462 0.00 0.00 40.75 1.75
3252 8223 5.958380 AGAGTGGTCAATTCCAGTAGTGATA 59.042 40.000 0.00 0.00 40.75 2.15
3253 8224 4.780021 AGAGTGGTCAATTCCAGTAGTGAT 59.220 41.667 0.00 0.00 40.75 3.06
3254 8225 4.021104 CAGAGTGGTCAATTCCAGTAGTGA 60.021 45.833 0.00 0.00 40.75 3.41
3255 8226 4.248859 CAGAGTGGTCAATTCCAGTAGTG 58.751 47.826 0.00 0.00 40.75 2.74
3256 8227 3.904339 ACAGAGTGGTCAATTCCAGTAGT 59.096 43.478 0.00 0.00 40.75 2.73
3257 8228 4.499183 GACAGAGTGGTCAATTCCAGTAG 58.501 47.826 0.00 0.00 40.75 2.57
3258 8229 3.056821 CGACAGAGTGGTCAATTCCAGTA 60.057 47.826 0.00 0.00 40.75 2.74
3259 8230 2.289072 CGACAGAGTGGTCAATTCCAGT 60.289 50.000 0.00 0.00 43.03 4.00
3260 8231 2.029020 TCGACAGAGTGGTCAATTCCAG 60.029 50.000 0.00 0.00 38.23 3.86
3261 8232 1.967779 TCGACAGAGTGGTCAATTCCA 59.032 47.619 0.00 0.00 37.66 3.53
3262 8233 2.611518 CTCGACAGAGTGGTCAATTCC 58.388 52.381 0.00 0.00 39.60 3.01
3274 8245 1.176619 TTTCTCGGGCACTCGACAGA 61.177 55.000 0.00 0.00 35.18 3.41
3275 8246 1.009389 GTTTCTCGGGCACTCGACAG 61.009 60.000 0.00 0.00 35.18 3.51
3276 8247 1.006571 GTTTCTCGGGCACTCGACA 60.007 57.895 0.00 0.00 35.18 4.35
3277 8248 0.733223 GAGTTTCTCGGGCACTCGAC 60.733 60.000 0.00 0.00 35.18 4.20
3278 8249 1.585006 GAGTTTCTCGGGCACTCGA 59.415 57.895 0.00 0.00 37.60 4.04
3279 8250 4.170723 GAGTTTCTCGGGCACTCG 57.829 61.111 0.00 0.00 0.00 4.18
3288 8259 3.475944 GGCTTCGCCGAGTTTCTC 58.524 61.111 0.00 0.00 39.62 2.87
3298 8269 0.110192 CGAGTTTTTCAGGGCTTCGC 60.110 55.000 0.00 0.00 0.00 4.70
3299 8270 0.517316 CCGAGTTTTTCAGGGCTTCG 59.483 55.000 0.00 0.00 0.00 3.79
3300 8271 0.241213 GCCGAGTTTTTCAGGGCTTC 59.759 55.000 0.00 0.00 40.59 3.86
3301 8272 0.467290 TGCCGAGTTTTTCAGGGCTT 60.467 50.000 1.79 0.00 44.07 4.35
3302 8273 0.467290 TTGCCGAGTTTTTCAGGGCT 60.467 50.000 1.79 0.00 44.07 5.19
3303 8274 0.387565 TTTGCCGAGTTTTTCAGGGC 59.612 50.000 0.00 0.00 44.00 5.19
3304 8275 2.863740 GTTTTTGCCGAGTTTTTCAGGG 59.136 45.455 0.00 0.00 0.00 4.45
3305 8276 3.780902 AGTTTTTGCCGAGTTTTTCAGG 58.219 40.909 0.00 0.00 0.00 3.86
3306 8277 5.778161 AAAGTTTTTGCCGAGTTTTTCAG 57.222 34.783 0.00 0.00 0.00 3.02
3307 8278 5.120986 GGAAAAGTTTTTGCCGAGTTTTTCA 59.879 36.000 1.64 0.00 35.73 2.69
3308 8279 5.556470 GGAAAAGTTTTTGCCGAGTTTTTC 58.444 37.500 1.64 0.00 33.10 2.29
3309 8280 4.092237 CGGAAAAGTTTTTGCCGAGTTTTT 59.908 37.500 18.82 0.00 40.22 1.94
3310 8281 3.615056 CGGAAAAGTTTTTGCCGAGTTTT 59.385 39.130 18.82 0.00 40.22 2.43
3311 8282 3.183754 CGGAAAAGTTTTTGCCGAGTTT 58.816 40.909 18.82 0.00 40.22 2.66
3312 8283 2.480587 CCGGAAAAGTTTTTGCCGAGTT 60.481 45.455 23.13 0.00 40.22 3.01
3313 8284 1.066454 CCGGAAAAGTTTTTGCCGAGT 59.934 47.619 23.13 0.00 40.22 4.18
3314 8285 1.335496 TCCGGAAAAGTTTTTGCCGAG 59.665 47.619 23.13 15.54 40.22 4.63
3315 8286 1.390565 TCCGGAAAAGTTTTTGCCGA 58.609 45.000 23.13 7.75 40.22 5.54
3316 8287 2.211353 TTCCGGAAAAGTTTTTGCCG 57.789 45.000 16.28 17.36 38.91 5.69
3317 8288 3.527533 AGTTTCCGGAAAAGTTTTTGCC 58.472 40.909 30.49 14.82 35.40 4.52
3318 8289 5.345702 AGTAGTTTCCGGAAAAGTTTTTGC 58.654 37.500 30.49 15.52 35.48 3.68
3319 8290 6.792326 AGAGTAGTTTCCGGAAAAGTTTTTG 58.208 36.000 30.49 0.00 32.66 2.44
3320 8291 6.238293 CGAGAGTAGTTTCCGGAAAAGTTTTT 60.238 38.462 30.49 15.28 32.66 1.94
3321 8292 5.235831 CGAGAGTAGTTTCCGGAAAAGTTTT 59.764 40.000 30.49 15.28 32.66 2.43
3322 8293 4.748600 CGAGAGTAGTTTCCGGAAAAGTTT 59.251 41.667 30.49 16.66 32.66 2.66
3323 8294 4.304939 CGAGAGTAGTTTCCGGAAAAGTT 58.695 43.478 30.49 20.25 32.66 2.66
3324 8295 3.305881 CCGAGAGTAGTTTCCGGAAAAGT 60.306 47.826 30.49 22.05 42.49 2.66
3325 8296 3.251571 CCGAGAGTAGTTTCCGGAAAAG 58.748 50.000 30.49 13.63 42.49 2.27
3326 8297 2.611224 GCCGAGAGTAGTTTCCGGAAAA 60.611 50.000 30.49 14.24 42.49 2.29
3327 8298 1.067354 GCCGAGAGTAGTTTCCGGAAA 60.067 52.381 25.67 25.67 42.49 3.13
3328 8299 0.529378 GCCGAGAGTAGTTTCCGGAA 59.471 55.000 14.35 14.35 42.49 4.30
3329 8300 0.609957 TGCCGAGAGTAGTTTCCGGA 60.610 55.000 0.00 0.00 42.49 5.14
3330 8301 0.179134 CTGCCGAGAGTAGTTTCCGG 60.179 60.000 0.00 0.00 42.74 5.14
3331 8302 0.809385 TCTGCCGAGAGTAGTTTCCG 59.191 55.000 0.00 0.00 0.00 4.30
3332 8303 2.417515 CCTTCTGCCGAGAGTAGTTTCC 60.418 54.545 0.00 0.00 0.00 3.13
3333 8304 2.882324 CCTTCTGCCGAGAGTAGTTTC 58.118 52.381 0.00 0.00 0.00 2.78
3334 8305 1.066787 GCCTTCTGCCGAGAGTAGTTT 60.067 52.381 0.00 0.00 0.00 2.66
3335 8306 0.533032 GCCTTCTGCCGAGAGTAGTT 59.467 55.000 0.00 0.00 0.00 2.24
3336 8307 0.612174 TGCCTTCTGCCGAGAGTAGT 60.612 55.000 0.00 0.00 40.16 2.73
3337 8308 0.749649 ATGCCTTCTGCCGAGAGTAG 59.250 55.000 0.00 0.00 40.16 2.57
3338 8309 2.067365 TATGCCTTCTGCCGAGAGTA 57.933 50.000 0.00 0.00 40.16 2.59
3339 8310 1.069823 CATATGCCTTCTGCCGAGAGT 59.930 52.381 0.00 0.00 40.16 3.24
3340 8311 1.607509 CCATATGCCTTCTGCCGAGAG 60.608 57.143 0.00 0.00 40.16 3.20
3341 8312 0.394192 CCATATGCCTTCTGCCGAGA 59.606 55.000 0.00 0.00 40.16 4.04
3342 8313 1.233285 GCCATATGCCTTCTGCCGAG 61.233 60.000 0.00 0.00 40.16 4.63
3343 8314 1.227943 GCCATATGCCTTCTGCCGA 60.228 57.895 0.00 0.00 40.16 5.54
3344 8315 2.610694 CGCCATATGCCTTCTGCCG 61.611 63.158 0.00 0.00 40.16 5.69
3345 8316 0.250295 TACGCCATATGCCTTCTGCC 60.250 55.000 0.00 0.00 40.16 4.85
3346 8317 0.868406 GTACGCCATATGCCTTCTGC 59.132 55.000 0.00 0.00 41.77 4.26
3347 8318 1.867233 GTGTACGCCATATGCCTTCTG 59.133 52.381 0.00 0.00 36.24 3.02
3348 8319 1.202651 GGTGTACGCCATATGCCTTCT 60.203 52.381 20.74 0.00 36.24 2.85
3349 8320 1.226746 GGTGTACGCCATATGCCTTC 58.773 55.000 20.74 0.00 36.24 3.46
3350 8321 0.179029 GGGTGTACGCCATATGCCTT 60.179 55.000 26.20 0.00 36.24 4.35
3351 8322 1.450211 GGGTGTACGCCATATGCCT 59.550 57.895 26.20 0.00 36.24 4.75
3352 8323 1.599797 GGGGTGTACGCCATATGCC 60.600 63.158 26.20 14.11 46.98 4.40
3353 8324 4.058797 GGGGTGTACGCCATATGC 57.941 61.111 26.20 8.82 46.98 3.14
3360 8331 2.741486 TTTGCCAGAGGGGTGTACGC 62.741 60.000 0.00 0.00 39.65 4.42
3361 8332 0.953960 GTTTGCCAGAGGGGTGTACG 60.954 60.000 0.00 0.00 39.65 3.67
3362 8333 0.109723 TGTTTGCCAGAGGGGTGTAC 59.890 55.000 0.00 0.00 39.65 2.90
3363 8334 0.400213 CTGTTTGCCAGAGGGGTGTA 59.600 55.000 0.00 0.00 44.49 2.90
3364 8335 1.151450 CTGTTTGCCAGAGGGGTGT 59.849 57.895 0.00 0.00 44.49 4.16
3365 8336 1.455849 TCTGTTTGCCAGAGGGGTG 59.544 57.895 0.00 0.00 45.34 4.61
3366 8337 4.002006 TCTGTTTGCCAGAGGGGT 57.998 55.556 0.00 0.00 45.34 4.95
3372 8343 2.689983 AGGACAAAGTTCTGTTTGCCAG 59.310 45.455 10.39 0.00 40.49 4.85
3373 8344 2.426738 CAGGACAAAGTTCTGTTTGCCA 59.573 45.455 0.00 0.00 40.49 4.92
3374 8345 3.084070 CAGGACAAAGTTCTGTTTGCC 57.916 47.619 0.00 0.00 40.49 4.52
3380 8351 0.588252 CGGCACAGGACAAAGTTCTG 59.412 55.000 3.94 3.94 44.22 3.02
3381 8352 0.180406 ACGGCACAGGACAAAGTTCT 59.820 50.000 0.00 0.00 0.00 3.01
3382 8353 1.873698 TACGGCACAGGACAAAGTTC 58.126 50.000 0.00 0.00 0.00 3.01
3383 8354 2.151202 CATACGGCACAGGACAAAGTT 58.849 47.619 0.00 0.00 0.00 2.66
3384 8355 1.071699 ACATACGGCACAGGACAAAGT 59.928 47.619 0.00 0.00 0.00 2.66
3385 8356 1.732259 GACATACGGCACAGGACAAAG 59.268 52.381 0.00 0.00 0.00 2.77
3386 8357 1.803334 GACATACGGCACAGGACAAA 58.197 50.000 0.00 0.00 0.00 2.83
3387 8358 0.389296 CGACATACGGCACAGGACAA 60.389 55.000 0.00 0.00 38.46 3.18
3388 8359 1.214325 CGACATACGGCACAGGACA 59.786 57.895 0.00 0.00 38.46 4.02
3389 8360 4.088421 CGACATACGGCACAGGAC 57.912 61.111 0.00 0.00 38.46 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.