Multiple sequence alignment - TraesCS7D01G483000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G483000 chr7D 100.000 4317 0 0 1 4317 593179720 593175404 0.000000e+00 7973.0
1 TraesCS7D01G483000 chr7D 83.673 98 16 0 4139 4236 566448892 566448795 4.600000e-15 93.5
2 TraesCS7D01G483000 chr7B 91.820 3924 204 63 3 3849 667776688 667780571 0.000000e+00 5360.0
3 TraesCS7D01G483000 chr7B 89.535 86 9 0 3848 3933 606560345 606560430 4.560000e-20 110.0
4 TraesCS7D01G483000 chr7B 85.870 92 12 1 4141 4231 319389915 319390006 3.550000e-16 97.1
5 TraesCS7D01G483000 chr7A 91.944 2160 128 24 1697 3847 685906497 685904375 0.000000e+00 2983.0
6 TraesCS7D01G483000 chr7A 89.919 1736 94 44 4 1699 685908351 685906657 0.000000e+00 2161.0
7 TraesCS7D01G483000 chr7A 85.039 127 11 7 511 630 318259680 318259805 5.860000e-24 122.0
8 TraesCS7D01G483000 chr7A 91.860 86 7 0 3848 3933 412481402 412481317 2.110000e-23 121.0
9 TraesCS7D01G483000 chr6D 77.586 464 96 8 2833 3292 152269677 152269218 1.530000e-69 274.0
10 TraesCS7D01G483000 chr6B 77.634 465 94 10 2833 3292 276746009 276745550 1.530000e-69 274.0
11 TraesCS7D01G483000 chr6B 89.535 86 9 0 4146 4231 267328894 267328809 4.560000e-20 110.0
12 TraesCS7D01G483000 chr6B 89.535 86 9 0 4146 4231 267507321 267507236 4.560000e-20 110.0
13 TraesCS7D01G483000 chr6A 77.371 464 97 8 2833 3292 189921897 189922356 7.120000e-68 268.0
14 TraesCS7D01G483000 chr6A 82.313 147 17 8 511 649 579956498 579956353 7.580000e-23 119.0
15 TraesCS7D01G483000 chr6A 81.699 153 16 9 511 656 118962717 118962570 2.730000e-22 117.0
16 TraesCS7D01G483000 chr6A 81.046 153 17 8 511 656 118518168 118518021 1.270000e-20 111.0
17 TraesCS7D01G483000 chr3B 75.328 381 42 31 474 846 82630555 82630219 7.530000e-28 135.0
18 TraesCS7D01G483000 chr3B 91.860 86 7 0 3848 3933 663065790 663065875 2.110000e-23 121.0
19 TraesCS7D01G483000 chr3B 89.888 89 9 0 4146 4234 268362021 268361933 9.810000e-22 115.0
20 TraesCS7D01G483000 chr3B 89.535 86 9 0 3848 3933 316623240 316623325 4.560000e-20 110.0
21 TraesCS7D01G483000 chr3B 87.912 91 10 1 3844 3933 145655969 145656059 5.900000e-19 106.0
22 TraesCS7D01G483000 chr3B 87.640 89 11 0 4147 4235 510327059 510326971 2.120000e-18 104.0
23 TraesCS7D01G483000 chr5A 83.007 153 15 6 511 656 175564031 175564179 1.260000e-25 128.0
24 TraesCS7D01G483000 chr5B 91.011 89 8 0 4147 4235 539660083 539660171 2.110000e-23 121.0
25 TraesCS7D01G483000 chr5B 89.535 86 9 0 3848 3933 457819473 457819388 4.560000e-20 110.0
26 TraesCS7D01G483000 chr1B 81.699 153 16 9 511 656 346760389 346760536 2.730000e-22 117.0
27 TraesCS7D01G483000 chr1B 74.927 343 39 21 511 843 551720538 551720843 3.530000e-21 113.0
28 TraesCS7D01G483000 chr1D 90.698 86 8 0 3848 3933 88614951 88614866 9.810000e-22 115.0
29 TraesCS7D01G483000 chr4A 89.535 86 9 0 4146 4231 723424703 723424788 4.560000e-20 110.0
30 TraesCS7D01G483000 chr4A 88.764 89 9 1 4146 4234 350948616 350948529 1.640000e-19 108.0
31 TraesCS7D01G483000 chr2A 88.095 84 10 0 3850 3933 123130065 123129982 2.750000e-17 100.0
32 TraesCS7D01G483000 chr2A 85.882 85 10 2 3854 3936 5753656 5753572 5.950000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G483000 chr7D 593175404 593179720 4316 True 7973 7973 100.0000 1 4317 1 chr7D.!!$R2 4316
1 TraesCS7D01G483000 chr7B 667776688 667780571 3883 False 5360 5360 91.8200 3 3849 1 chr7B.!!$F3 3846
2 TraesCS7D01G483000 chr7A 685904375 685908351 3976 True 2572 2983 90.9315 4 3847 2 chr7A.!!$R2 3843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 728 0.758123 CCTCCCTCTTGCATCCTCTC 59.242 60.0 0.00 0.0 0.00 3.20 F
1068 1117 0.034896 TGGCCTCGGAGAAGAAACAC 59.965 55.0 6.58 0.0 34.09 3.32 F
2064 2284 0.107508 CGGTGAGTTGATGCCCTGAT 60.108 55.0 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2117 0.328450 TATGGCCCTCCTCCCACATT 60.328 55.000 0.00 0.0 33.17 2.71 R
2663 2897 1.215382 CGCGACAAGTGATGGAGGA 59.785 57.895 0.00 0.0 0.00 3.71 R
3612 3852 0.670239 TTCAGCAAAGATCGCGAGCA 60.670 50.000 27.74 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 156 1.028905 GAGACACTGATCTCCCGAGG 58.971 60.000 0.00 0.00 39.46 4.63
139 161 2.044352 TGATCTCCCGAGGTCGCA 60.044 61.111 0.71 0.00 41.41 5.10
278 304 6.334202 GTTACAGCAGCTATTCTGTACTTCT 58.666 40.000 17.19 0.28 43.19 2.85
279 305 5.413309 ACAGCAGCTATTCTGTACTTCTT 57.587 39.130 12.13 0.00 44.66 2.52
309 335 1.107114 TTTGCAAGTTTCGAAGGGCA 58.893 45.000 0.00 9.92 0.00 5.36
611 640 4.143333 TAGCCGCCACTCCTTCGC 62.143 66.667 0.00 0.00 0.00 4.70
615 644 4.394712 CGCCACTCCTTCGCCCTT 62.395 66.667 0.00 0.00 0.00 3.95
617 646 2.269241 CCACTCCTTCGCCCTTCC 59.731 66.667 0.00 0.00 0.00 3.46
618 647 2.269241 CACTCCTTCGCCCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
619 648 2.122954 ACTCCTTCGCCCTTCCCT 59.877 61.111 0.00 0.00 0.00 4.20
620 649 1.539124 ACTCCTTCGCCCTTCCCTT 60.539 57.895 0.00 0.00 0.00 3.95
621 650 1.222113 CTCCTTCGCCCTTCCCTTC 59.778 63.158 0.00 0.00 0.00 3.46
622 651 2.258748 CTCCTTCGCCCTTCCCTTCC 62.259 65.000 0.00 0.00 0.00 3.46
631 660 2.040606 TTCCCTTCCTCCTCCCCG 59.959 66.667 0.00 0.00 0.00 5.73
699 728 0.758123 CCTCCCTCTTGCATCCTCTC 59.242 60.000 0.00 0.00 0.00 3.20
704 733 2.015587 CCTCTTGCATCCTCTCTTTGC 58.984 52.381 0.00 0.00 36.91 3.68
707 736 2.303890 TCTTGCATCCTCTCTTTGCTCA 59.696 45.455 0.00 0.00 37.28 4.26
708 737 2.865119 TGCATCCTCTCTTTGCTCAA 57.135 45.000 0.00 0.00 37.28 3.02
711 740 3.504906 TGCATCCTCTCTTTGCTCAAAAG 59.495 43.478 0.00 0.00 45.76 2.27
769 804 9.143155 TGAGTACCTGCTGTAGATTTGATATTA 57.857 33.333 0.00 0.00 0.00 0.98
811 853 7.692460 TCATTTCTTGATGATTACTTGCTGT 57.308 32.000 0.00 0.00 31.35 4.40
822 864 7.936496 TGATTACTTGCTGTATGATTTTCCA 57.064 32.000 0.00 0.00 0.00 3.53
823 865 7.988737 TGATTACTTGCTGTATGATTTTCCAG 58.011 34.615 0.00 0.00 0.00 3.86
824 866 7.611467 TGATTACTTGCTGTATGATTTTCCAGT 59.389 33.333 0.00 0.00 0.00 4.00
825 867 5.633830 ACTTGCTGTATGATTTTCCAGTG 57.366 39.130 0.00 0.00 0.00 3.66
826 868 4.082571 ACTTGCTGTATGATTTTCCAGTGC 60.083 41.667 0.00 0.00 0.00 4.40
827 869 3.419943 TGCTGTATGATTTTCCAGTGCA 58.580 40.909 0.00 0.00 0.00 4.57
828 870 4.018490 TGCTGTATGATTTTCCAGTGCAT 58.982 39.130 0.00 0.00 0.00 3.96
829 871 4.142337 TGCTGTATGATTTTCCAGTGCATG 60.142 41.667 0.00 0.00 0.00 4.06
830 872 4.142315 GCTGTATGATTTTCCAGTGCATGT 60.142 41.667 0.00 0.00 0.00 3.21
832 874 5.953183 TGTATGATTTTCCAGTGCATGTTC 58.047 37.500 0.00 0.00 0.00 3.18
836 878 4.100653 TGATTTTCCAGTGCATGTTCCAAA 59.899 37.500 0.00 0.00 0.00 3.28
849 893 7.171337 GTGCATGTTCCAAAGTTTACATGATTT 59.829 33.333 24.47 0.00 46.70 2.17
1068 1117 0.034896 TGGCCTCGGAGAAGAAACAC 59.965 55.000 6.58 0.00 34.09 3.32
1114 1163 1.342672 GCTCCGGTTCCCTTGGGATA 61.343 60.000 9.48 0.00 0.00 2.59
1125 1174 3.117888 TCCCTTGGGATATGCAAGAAGAC 60.118 47.826 3.91 0.00 0.00 3.01
1140 1195 1.801178 GAAGACAACAAGGCCTTCTCG 59.199 52.381 17.29 7.48 33.98 4.04
1151 1206 1.443802 GCCTTCTCGTTAAGCTTGCT 58.556 50.000 9.86 0.00 0.00 3.91
1152 1207 1.129437 GCCTTCTCGTTAAGCTTGCTG 59.871 52.381 9.86 0.00 0.00 4.41
1153 1208 1.129437 CCTTCTCGTTAAGCTTGCTGC 59.871 52.381 9.86 0.00 43.29 5.25
1173 1231 0.980231 ATGACTCTGCCTCCCCTCAC 60.980 60.000 0.00 0.00 0.00 3.51
1236 1294 3.357079 CCGGCAGTGTCAACCAGC 61.357 66.667 0.00 0.00 0.00 4.85
1392 1450 1.308783 GGAAGAAGGCCAAGAAGCGG 61.309 60.000 5.01 0.00 0.00 5.52
1419 1477 6.591448 GGCTGAAACTGAAAATTAAGATTGGG 59.409 38.462 0.00 0.00 0.00 4.12
1575 1633 5.104776 TCAGACAATTATGAAGACAGAGGGG 60.105 44.000 0.00 0.00 0.00 4.79
1605 1663 2.862140 GCTGTTCCGTGGGAATTTTGTG 60.862 50.000 0.00 0.00 44.04 3.33
1611 1669 3.254657 TCCGTGGGAATTTTGTGAATGTC 59.745 43.478 0.00 0.00 0.00 3.06
1676 1734 2.300956 TGCTACTTGGCAATTCCCAA 57.699 45.000 0.00 0.00 42.37 4.12
1699 1757 8.686334 CCAATAGACCTTGTTGCTAAAATGTAT 58.314 33.333 0.00 0.00 0.00 2.29
1701 1759 9.686683 AATAGACCTTGTTGCTAAAATGTATCT 57.313 29.630 0.00 0.00 0.00 1.98
1722 1942 3.153369 TGTGATGTAACCAATGCCTGT 57.847 42.857 0.00 0.00 0.00 4.00
1740 1960 4.037208 GCCTGTTGTATTGCTGATGCTATT 59.963 41.667 0.00 0.00 40.48 1.73
1754 1974 3.257469 TGCTATTGAGGTTCTCTGCTG 57.743 47.619 0.00 0.00 0.00 4.41
1755 1975 2.093288 TGCTATTGAGGTTCTCTGCTGG 60.093 50.000 0.00 0.00 0.00 4.85
1761 1981 2.038557 TGAGGTTCTCTGCTGGTTAACC 59.961 50.000 18.27 18.27 39.92 2.85
1762 1982 2.038557 GAGGTTCTCTGCTGGTTAACCA 59.961 50.000 25.58 25.58 45.30 3.67
1787 2007 9.226606 CAATTTACTATAGGGTGTCAACTTCAA 57.773 33.333 4.43 0.00 0.00 2.69
1793 2013 4.918810 AGGGTGTCAACTTCAATTTCAC 57.081 40.909 0.00 0.00 0.00 3.18
1799 2019 5.516339 GTGTCAACTTCAATTTCACTTGTGG 59.484 40.000 0.64 0.00 0.00 4.17
1814 2034 1.630223 TGTGGTCGTGTGGTATGGTA 58.370 50.000 0.00 0.00 0.00 3.25
1992 2212 7.630944 GCTGCTATTAGTGAAGTAGGTGTAACT 60.631 40.741 0.00 0.00 36.74 2.24
2018 2238 8.172484 TGTATATGCGATTTGTAAACACAGTTC 58.828 33.333 0.00 0.00 0.00 3.01
2039 2259 2.424234 CCTGGAAAGGAGTTTGGGTTCA 60.424 50.000 0.00 0.00 0.00 3.18
2041 2261 2.243736 TGGAAAGGAGTTTGGGTTCACT 59.756 45.455 0.00 0.00 0.00 3.41
2046 2266 3.473625 AGGAGTTTGGGTTCACTTAACG 58.526 45.455 0.00 0.00 39.13 3.18
2058 2278 3.064207 TCACTTAACGGTGAGTTGATGC 58.936 45.455 0.00 0.00 44.01 3.91
2059 2279 2.159627 CACTTAACGGTGAGTTGATGCC 59.840 50.000 0.00 0.00 44.01 4.40
2060 2280 1.737793 CTTAACGGTGAGTTGATGCCC 59.262 52.381 0.00 0.00 44.01 5.36
2061 2281 0.981183 TAACGGTGAGTTGATGCCCT 59.019 50.000 0.00 0.00 44.01 5.19
2062 2282 0.606401 AACGGTGAGTTGATGCCCTG 60.606 55.000 0.00 0.00 42.39 4.45
2063 2283 1.296392 CGGTGAGTTGATGCCCTGA 59.704 57.895 0.00 0.00 0.00 3.86
2064 2284 0.107508 CGGTGAGTTGATGCCCTGAT 60.108 55.000 0.00 0.00 0.00 2.90
2065 2285 1.386533 GGTGAGTTGATGCCCTGATG 58.613 55.000 0.00 0.00 0.00 3.07
2068 2288 1.340308 TGAGTTGATGCCCTGATGGTG 60.340 52.381 0.00 0.00 36.04 4.17
2093 2315 8.946085 TGTCCTACATTTGATTACAATTGAGTC 58.054 33.333 13.59 7.41 38.72 3.36
2140 2363 9.962809 GGTCTGTCCTCTAGTATTAGTATATGT 57.037 37.037 0.00 0.00 0.00 2.29
2161 2384 4.058817 GTTGGTCCTGACACTCTTAACAG 58.941 47.826 0.00 0.00 0.00 3.16
2181 2404 3.570125 CAGAGTCAGACTGTGGACACTTA 59.430 47.826 18.22 0.00 36.02 2.24
2235 2467 5.525454 TTTACACTACCTCTACTCCCTGA 57.475 43.478 0.00 0.00 0.00 3.86
2270 2502 1.238439 GAACTGCCACTGCTTGCTTA 58.762 50.000 0.00 0.00 38.71 3.09
2333 2565 9.796062 CAAAACATTAATGCAATTTCACTGTAC 57.204 29.630 15.48 0.00 37.87 2.90
2341 2573 4.803088 TGCAATTTCACTGTACAAACTTGC 59.197 37.500 19.22 19.22 37.54 4.01
2349 2581 5.030295 CACTGTACAAACTTGCTTTGACTG 58.970 41.667 0.00 5.07 41.81 3.51
2353 2585 3.848726 ACAAACTTGCTTTGACTGTTGG 58.151 40.909 4.11 0.00 41.81 3.77
2366 2598 6.822667 TTGACTGTTGGTATAGAAGTACGA 57.177 37.500 0.00 0.00 0.00 3.43
2448 2681 2.031245 TGCTACACTCAAATTGGTTGCG 60.031 45.455 0.00 0.00 37.13 4.85
2457 2690 4.245660 TCAAATTGGTTGCGAGTCTCTAG 58.754 43.478 0.00 0.00 37.13 2.43
2459 2692 1.629043 TTGGTTGCGAGTCTCTAGGT 58.371 50.000 0.00 0.00 0.00 3.08
2460 2693 1.629043 TGGTTGCGAGTCTCTAGGTT 58.371 50.000 0.00 0.00 0.00 3.50
2472 2705 6.072064 CGAGTCTCTAGGTTCAGTTCCTTTTA 60.072 42.308 0.00 0.00 36.60 1.52
2645 2879 2.290514 CCTGACTCCAAAGGCTGATGAA 60.291 50.000 2.35 0.00 31.23 2.57
2657 2891 4.555689 AGGCTGATGAATCCTCTAAGACT 58.444 43.478 0.00 0.00 0.00 3.24
2663 2897 5.966935 TGATGAATCCTCTAAGACTCCCTTT 59.033 40.000 0.00 0.00 36.34 3.11
2842 3076 5.050091 CGTGTACTTGTTTCTGCAGAAAGAT 60.050 40.000 36.07 24.62 43.82 2.40
3160 3394 1.967319 ACAAGAACGTGTTCCATGCT 58.033 45.000 9.03 0.00 40.33 3.79
3283 3517 1.195115 ACGAGGCCTGCAAGAAGATA 58.805 50.000 12.00 0.00 34.07 1.98
3306 3540 1.093159 GTCGAAGCCGAGGAGTAGAA 58.907 55.000 0.00 0.00 46.52 2.10
3312 3546 0.525882 GCCGAGGAGTAGAACGAAGC 60.526 60.000 0.00 0.00 0.00 3.86
3314 3548 0.447011 CGAGGAGTAGAACGAAGCGT 59.553 55.000 0.00 0.00 43.97 5.07
3316 3550 1.467734 GAGGAGTAGAACGAAGCGTGA 59.532 52.381 0.00 0.00 39.99 4.35
3317 3551 2.093106 AGGAGTAGAACGAAGCGTGAT 58.907 47.619 0.00 0.00 39.99 3.06
3348 3583 0.108329 TCCTTAAAGAAGAGGCGGCG 60.108 55.000 0.51 0.51 34.25 6.46
3457 3696 5.241949 AGACACGTCTGTTAGATGAAGAAGT 59.758 40.000 0.00 0.00 38.75 3.01
3558 3797 3.369451 GCTACTTTGCTTCTGTGCTACTC 59.631 47.826 0.00 0.00 0.00 2.59
3559 3798 3.760580 ACTTTGCTTCTGTGCTACTCT 57.239 42.857 0.00 0.00 0.00 3.24
3595 3835 3.877508 CCTTTTATCACCGGATCTTGGTC 59.122 47.826 9.46 0.00 37.72 4.02
3612 3852 7.067496 TCTTGGTCAATCTTTACAGAGAACT 57.933 36.000 0.00 0.00 30.36 3.01
3657 3897 0.393077 AGTGCTACGACAGGCAGTTT 59.607 50.000 0.00 0.00 38.76 2.66
3697 3937 2.746904 TCACTGCGGTTGGTTGAATATG 59.253 45.455 0.00 0.00 0.00 1.78
3811 4058 6.389091 TCGTAACGATTTTTCAGCCTTAGTA 58.611 36.000 0.00 0.00 0.00 1.82
3816 4063 7.247929 ACGATTTTTCAGCCTTAGTATTAGC 57.752 36.000 0.00 0.00 0.00 3.09
3849 4096 2.273557 GCCGTTTTCTAGCCGAATACA 58.726 47.619 7.39 0.00 34.46 2.29
3850 4097 2.870411 GCCGTTTTCTAGCCGAATACAT 59.130 45.455 7.39 0.00 34.46 2.29
3851 4098 4.053295 GCCGTTTTCTAGCCGAATACATA 58.947 43.478 7.39 0.00 34.46 2.29
3852 4099 4.150098 GCCGTTTTCTAGCCGAATACATAG 59.850 45.833 7.39 0.00 34.46 2.23
3853 4100 5.526115 CCGTTTTCTAGCCGAATACATAGA 58.474 41.667 7.39 0.00 34.46 1.98
3854 4101 5.981315 CCGTTTTCTAGCCGAATACATAGAA 59.019 40.000 7.39 0.00 34.46 2.10
3855 4102 6.144080 CCGTTTTCTAGCCGAATACATAGAAG 59.856 42.308 7.39 0.00 36.08 2.85
3856 4103 6.696148 CGTTTTCTAGCCGAATACATAGAAGT 59.304 38.462 7.39 0.00 36.08 3.01
3857 4104 7.859377 CGTTTTCTAGCCGAATACATAGAAGTA 59.141 37.037 7.39 0.00 36.08 2.24
3858 4105 9.182933 GTTTTCTAGCCGAATACATAGAAGTAG 57.817 37.037 0.00 0.00 36.08 2.57
3859 4106 8.461249 TTTCTAGCCGAATACATAGAAGTAGT 57.539 34.615 0.00 0.00 36.08 2.73
3860 4107 9.565090 TTTCTAGCCGAATACATAGAAGTAGTA 57.435 33.333 0.00 0.00 36.08 1.82
3861 4108 9.736414 TTCTAGCCGAATACATAGAAGTAGTAT 57.264 33.333 0.00 0.00 32.11 2.12
3862 4109 9.381033 TCTAGCCGAATACATAGAAGTAGTATC 57.619 37.037 0.00 0.00 0.00 2.24
3863 4110 7.997773 AGCCGAATACATAGAAGTAGTATCA 57.002 36.000 0.00 0.00 0.00 2.15
3864 4111 8.582657 AGCCGAATACATAGAAGTAGTATCAT 57.417 34.615 0.00 0.00 0.00 2.45
3865 4112 9.682465 AGCCGAATACATAGAAGTAGTATCATA 57.318 33.333 0.00 0.00 0.00 2.15
3906 4153 9.906660 TTAGATTGTATACTTGTTTTGCTTTGG 57.093 29.630 4.17 0.00 0.00 3.28
3907 4154 7.378181 AGATTGTATACTTGTTTTGCTTTGGG 58.622 34.615 4.17 0.00 0.00 4.12
3908 4155 6.472686 TTGTATACTTGTTTTGCTTTGGGT 57.527 33.333 4.17 0.00 0.00 4.51
3909 4156 6.472686 TGTATACTTGTTTTGCTTTGGGTT 57.527 33.333 4.17 0.00 0.00 4.11
3910 4157 6.276847 TGTATACTTGTTTTGCTTTGGGTTG 58.723 36.000 4.17 0.00 0.00 3.77
3911 4158 2.355197 ACTTGTTTTGCTTTGGGTTGC 58.645 42.857 0.00 0.00 0.00 4.17
3912 4159 2.289945 ACTTGTTTTGCTTTGGGTTGCA 60.290 40.909 0.00 0.00 37.42 4.08
3913 4160 2.706339 TGTTTTGCTTTGGGTTGCAT 57.294 40.000 0.00 0.00 39.07 3.96
3914 4161 2.996631 TGTTTTGCTTTGGGTTGCATT 58.003 38.095 0.00 0.00 39.07 3.56
3915 4162 4.142609 TGTTTTGCTTTGGGTTGCATTA 57.857 36.364 0.00 0.00 39.07 1.90
3916 4163 4.712476 TGTTTTGCTTTGGGTTGCATTAT 58.288 34.783 0.00 0.00 39.07 1.28
3917 4164 4.514441 TGTTTTGCTTTGGGTTGCATTATG 59.486 37.500 0.00 0.00 39.07 1.90
3918 4165 4.348863 TTTGCTTTGGGTTGCATTATGT 57.651 36.364 0.00 0.00 39.07 2.29
3919 4166 4.348863 TTGCTTTGGGTTGCATTATGTT 57.651 36.364 0.00 0.00 39.07 2.71
3920 4167 5.474578 TTGCTTTGGGTTGCATTATGTTA 57.525 34.783 0.00 0.00 39.07 2.41
3921 4168 4.815269 TGCTTTGGGTTGCATTATGTTAC 58.185 39.130 0.00 0.00 33.94 2.50
3922 4169 4.281941 TGCTTTGGGTTGCATTATGTTACA 59.718 37.500 0.00 0.00 33.94 2.41
3923 4170 4.864247 GCTTTGGGTTGCATTATGTTACAG 59.136 41.667 0.00 0.00 0.00 2.74
3924 4171 5.566627 GCTTTGGGTTGCATTATGTTACAGT 60.567 40.000 0.00 0.00 0.00 3.55
3925 4172 6.349777 GCTTTGGGTTGCATTATGTTACAGTA 60.350 38.462 0.00 0.00 0.00 2.74
3926 4173 7.526142 TTTGGGTTGCATTATGTTACAGTAA 57.474 32.000 0.00 0.00 0.00 2.24
3927 4174 6.503589 TGGGTTGCATTATGTTACAGTAAC 57.496 37.500 15.58 15.58 39.11 2.50
3975 4222 9.995003 ATGCTAAATAATCAAACTTGTTTTGGA 57.005 25.926 0.00 0.00 44.30 3.53
3976 4223 9.823647 TGCTAAATAATCAAACTTGTTTTGGAA 57.176 25.926 0.00 0.00 44.30 3.53
3981 4228 5.989551 ATCAAACTTGTTTTGGAATGTGC 57.010 34.783 0.00 0.00 44.30 4.57
3982 4229 5.083533 TCAAACTTGTTTTGGAATGTGCT 57.916 34.783 0.00 0.00 44.30 4.40
3983 4230 6.214191 TCAAACTTGTTTTGGAATGTGCTA 57.786 33.333 0.00 0.00 44.30 3.49
3984 4231 6.815089 TCAAACTTGTTTTGGAATGTGCTAT 58.185 32.000 0.00 0.00 44.30 2.97
3985 4232 6.700960 TCAAACTTGTTTTGGAATGTGCTATG 59.299 34.615 0.00 0.00 44.30 2.23
3986 4233 5.789643 ACTTGTTTTGGAATGTGCTATGT 57.210 34.783 0.00 0.00 0.00 2.29
3987 4234 6.160576 ACTTGTTTTGGAATGTGCTATGTT 57.839 33.333 0.00 0.00 0.00 2.71
3988 4235 7.283625 ACTTGTTTTGGAATGTGCTATGTTA 57.716 32.000 0.00 0.00 0.00 2.41
3989 4236 7.145323 ACTTGTTTTGGAATGTGCTATGTTAC 58.855 34.615 0.00 0.00 0.00 2.50
3990 4237 6.892658 TGTTTTGGAATGTGCTATGTTACT 57.107 33.333 0.00 0.00 0.00 2.24
3991 4238 7.987750 TGTTTTGGAATGTGCTATGTTACTA 57.012 32.000 0.00 0.00 0.00 1.82
3992 4239 7.812648 TGTTTTGGAATGTGCTATGTTACTAC 58.187 34.615 0.00 0.00 0.00 2.73
3993 4240 7.663905 TGTTTTGGAATGTGCTATGTTACTACT 59.336 33.333 0.00 0.00 0.00 2.57
3994 4241 9.158233 GTTTTGGAATGTGCTATGTTACTACTA 57.842 33.333 0.00 0.00 0.00 1.82
3995 4242 8.942338 TTTGGAATGTGCTATGTTACTACTAG 57.058 34.615 0.00 0.00 0.00 2.57
3996 4243 6.513180 TGGAATGTGCTATGTTACTACTAGC 58.487 40.000 0.00 5.62 38.65 3.42
3997 4244 6.323996 TGGAATGTGCTATGTTACTACTAGCT 59.676 38.462 11.26 0.00 38.89 3.32
3998 4245 7.504574 TGGAATGTGCTATGTTACTACTAGCTA 59.495 37.037 11.26 0.00 38.89 3.32
3999 4246 8.358148 GGAATGTGCTATGTTACTACTAGCTAA 58.642 37.037 0.00 3.51 38.89 3.09
4000 4247 9.400638 GAATGTGCTATGTTACTACTAGCTAAG 57.599 37.037 0.00 0.00 38.89 2.18
4001 4248 7.876936 TGTGCTATGTTACTACTAGCTAAGT 57.123 36.000 3.65 3.65 42.62 2.24
4002 4249 8.289939 TGTGCTATGTTACTACTAGCTAAGTT 57.710 34.615 3.47 0.00 39.80 2.66
4003 4250 9.399797 TGTGCTATGTTACTACTAGCTAAGTTA 57.600 33.333 3.47 0.00 39.80 2.24
4006 4253 9.676195 GCTATGTTACTACTAGCTAAGTTAACC 57.324 37.037 3.47 0.00 39.80 2.85
4009 4256 7.542025 TGTTACTACTAGCTAAGTTAACCAGC 58.458 38.462 17.85 17.85 39.80 4.85
4010 4257 5.595257 ACTACTAGCTAAGTTAACCAGCC 57.405 43.478 20.54 8.05 39.80 4.85
4011 4258 5.270794 ACTACTAGCTAAGTTAACCAGCCT 58.729 41.667 20.54 13.12 39.80 4.58
4012 4259 6.430007 ACTACTAGCTAAGTTAACCAGCCTA 58.570 40.000 20.54 13.43 39.80 3.93
4013 4260 6.894103 ACTACTAGCTAAGTTAACCAGCCTAA 59.106 38.462 20.54 9.98 39.80 2.69
4014 4261 6.223351 ACTAGCTAAGTTAACCAGCCTAAG 57.777 41.667 20.54 17.76 33.35 2.18
4015 4262 5.956563 ACTAGCTAAGTTAACCAGCCTAAGA 59.043 40.000 20.54 6.19 33.35 2.10
4016 4263 5.757099 AGCTAAGTTAACCAGCCTAAGAA 57.243 39.130 20.54 0.00 35.88 2.52
4017 4264 6.123045 AGCTAAGTTAACCAGCCTAAGAAA 57.877 37.500 20.54 0.00 35.88 2.52
4018 4265 6.540083 AGCTAAGTTAACCAGCCTAAGAAAA 58.460 36.000 20.54 0.00 35.88 2.29
4019 4266 7.002276 AGCTAAGTTAACCAGCCTAAGAAAAA 58.998 34.615 20.54 0.00 35.88 1.94
4055 4302 8.567285 ACCAAGATAAAATAGTTCTCAAGTGG 57.433 34.615 0.00 0.00 0.00 4.00
4056 4303 7.611855 ACCAAGATAAAATAGTTCTCAAGTGGG 59.388 37.037 0.00 0.00 0.00 4.61
4057 4304 7.067494 CCAAGATAAAATAGTTCTCAAGTGGGG 59.933 40.741 0.00 0.00 0.00 4.96
4058 4305 7.510675 AGATAAAATAGTTCTCAAGTGGGGA 57.489 36.000 0.00 0.00 0.00 4.81
4059 4306 8.107196 AGATAAAATAGTTCTCAAGTGGGGAT 57.893 34.615 0.00 0.00 0.00 3.85
4060 4307 8.560903 AGATAAAATAGTTCTCAAGTGGGGATT 58.439 33.333 0.00 0.00 0.00 3.01
4061 4308 8.753497 ATAAAATAGTTCTCAAGTGGGGATTC 57.247 34.615 0.00 0.00 0.00 2.52
4062 4309 5.779241 AATAGTTCTCAAGTGGGGATTCA 57.221 39.130 0.00 0.00 0.00 2.57
4063 4310 5.779241 ATAGTTCTCAAGTGGGGATTCAA 57.221 39.130 0.00 0.00 0.00 2.69
4064 4311 4.453480 AGTTCTCAAGTGGGGATTCAAA 57.547 40.909 0.00 0.00 0.00 2.69
4065 4312 4.145052 AGTTCTCAAGTGGGGATTCAAAC 58.855 43.478 0.00 0.00 0.00 2.93
4066 4313 4.141158 AGTTCTCAAGTGGGGATTCAAACT 60.141 41.667 0.00 0.00 0.00 2.66
4067 4314 4.453480 TCTCAAGTGGGGATTCAAACTT 57.547 40.909 0.00 0.00 33.20 2.66
4068 4315 4.398319 TCTCAAGTGGGGATTCAAACTTC 58.602 43.478 0.00 0.00 30.59 3.01
4069 4316 4.141274 TCTCAAGTGGGGATTCAAACTTCA 60.141 41.667 0.00 0.00 30.59 3.02
4070 4317 4.144297 TCAAGTGGGGATTCAAACTTCAG 58.856 43.478 0.00 0.00 30.59 3.02
4071 4318 4.141274 TCAAGTGGGGATTCAAACTTCAGA 60.141 41.667 0.00 0.00 30.59 3.27
4072 4319 3.756117 AGTGGGGATTCAAACTTCAGAC 58.244 45.455 0.00 0.00 0.00 3.51
4073 4320 2.820197 GTGGGGATTCAAACTTCAGACC 59.180 50.000 0.00 0.00 0.00 3.85
4074 4321 2.716424 TGGGGATTCAAACTTCAGACCT 59.284 45.455 0.00 0.00 0.00 3.85
4075 4322 3.140144 TGGGGATTCAAACTTCAGACCTT 59.860 43.478 0.00 0.00 0.00 3.50
4076 4323 4.352595 TGGGGATTCAAACTTCAGACCTTA 59.647 41.667 0.00 0.00 0.00 2.69
4077 4324 4.700692 GGGGATTCAAACTTCAGACCTTAC 59.299 45.833 0.00 0.00 0.00 2.34
4078 4325 4.700692 GGGATTCAAACTTCAGACCTTACC 59.299 45.833 0.00 0.00 0.00 2.85
4079 4326 4.700692 GGATTCAAACTTCAGACCTTACCC 59.299 45.833 0.00 0.00 0.00 3.69
4080 4327 5.515008 GGATTCAAACTTCAGACCTTACCCT 60.515 44.000 0.00 0.00 0.00 4.34
4081 4328 4.618920 TCAAACTTCAGACCTTACCCTC 57.381 45.455 0.00 0.00 0.00 4.30
4082 4329 3.006537 TCAAACTTCAGACCTTACCCTCG 59.993 47.826 0.00 0.00 0.00 4.63
4083 4330 1.558233 ACTTCAGACCTTACCCTCGG 58.442 55.000 0.00 0.00 0.00 4.63
4084 4331 1.076677 ACTTCAGACCTTACCCTCGGA 59.923 52.381 0.00 0.00 0.00 4.55
4085 4332 1.751924 CTTCAGACCTTACCCTCGGAG 59.248 57.143 0.00 0.00 0.00 4.63
4086 4333 0.683504 TCAGACCTTACCCTCGGAGC 60.684 60.000 0.00 0.00 0.00 4.70
4087 4334 1.753463 AGACCTTACCCTCGGAGCG 60.753 63.158 0.00 0.00 0.00 5.03
4088 4335 3.427598 GACCTTACCCTCGGAGCGC 62.428 68.421 0.00 0.00 0.00 5.92
4089 4336 3.148279 CCTTACCCTCGGAGCGCT 61.148 66.667 11.27 11.27 0.00 5.92
4090 4337 2.722201 CCTTACCCTCGGAGCGCTT 61.722 63.158 13.26 0.00 0.00 4.68
4091 4338 1.218316 CTTACCCTCGGAGCGCTTT 59.782 57.895 13.26 0.00 0.00 3.51
4092 4339 0.806492 CTTACCCTCGGAGCGCTTTC 60.806 60.000 13.26 6.49 0.00 2.62
4093 4340 1.255667 TTACCCTCGGAGCGCTTTCT 61.256 55.000 13.26 0.00 0.00 2.52
4094 4341 0.394762 TACCCTCGGAGCGCTTTCTA 60.395 55.000 13.26 0.00 0.00 2.10
4095 4342 1.227002 CCCTCGGAGCGCTTTCTAC 60.227 63.158 13.26 0.00 0.00 2.59
4096 4343 1.227002 CCTCGGAGCGCTTTCTACC 60.227 63.158 13.26 6.71 0.00 3.18
4097 4344 1.668101 CCTCGGAGCGCTTTCTACCT 61.668 60.000 13.26 0.00 0.00 3.08
4098 4345 0.526524 CTCGGAGCGCTTTCTACCTG 60.527 60.000 13.26 2.05 0.00 4.00
4099 4346 1.519455 CGGAGCGCTTTCTACCTGG 60.519 63.158 13.26 0.00 0.00 4.45
4100 4347 1.815840 GGAGCGCTTTCTACCTGGC 60.816 63.158 13.26 0.00 0.00 4.85
4101 4348 1.815840 GAGCGCTTTCTACCTGGCC 60.816 63.158 13.26 0.00 0.00 5.36
4102 4349 2.046314 GCGCTTTCTACCTGGCCA 60.046 61.111 4.71 4.71 0.00 5.36
4103 4350 1.674322 GCGCTTTCTACCTGGCCAA 60.674 57.895 7.01 0.00 0.00 4.52
4104 4351 1.923227 GCGCTTTCTACCTGGCCAAC 61.923 60.000 7.01 0.00 0.00 3.77
4105 4352 1.635663 CGCTTTCTACCTGGCCAACG 61.636 60.000 7.01 1.67 0.00 4.10
4106 4353 1.923227 GCTTTCTACCTGGCCAACGC 61.923 60.000 7.01 0.00 0.00 4.84
4116 4363 3.354678 GCCAACGCCACTTCATGT 58.645 55.556 0.00 0.00 0.00 3.21
4117 4364 1.659794 GCCAACGCCACTTCATGTT 59.340 52.632 0.00 0.00 0.00 2.71
4118 4365 0.878416 GCCAACGCCACTTCATGTTA 59.122 50.000 0.00 0.00 0.00 2.41
4119 4366 1.135689 GCCAACGCCACTTCATGTTAG 60.136 52.381 0.00 0.00 0.00 2.34
4120 4367 2.151202 CCAACGCCACTTCATGTTAGT 58.849 47.619 0.00 0.00 0.00 2.24
4121 4368 3.331150 CCAACGCCACTTCATGTTAGTA 58.669 45.455 0.00 0.00 0.00 1.82
4122 4369 3.938963 CCAACGCCACTTCATGTTAGTAT 59.061 43.478 0.00 0.00 0.00 2.12
4123 4370 4.201812 CCAACGCCACTTCATGTTAGTATG 60.202 45.833 0.00 0.00 0.00 2.39
4124 4371 2.936498 ACGCCACTTCATGTTAGTATGC 59.064 45.455 0.00 4.00 0.00 3.14
4125 4372 2.287915 CGCCACTTCATGTTAGTATGCC 59.712 50.000 13.42 2.07 0.00 4.40
4126 4373 2.287915 GCCACTTCATGTTAGTATGCCG 59.712 50.000 0.00 0.00 0.00 5.69
4127 4374 2.872245 CCACTTCATGTTAGTATGCCGG 59.128 50.000 0.00 0.00 0.00 6.13
4128 4375 2.872245 CACTTCATGTTAGTATGCCGGG 59.128 50.000 2.18 0.00 0.00 5.73
4129 4376 1.873591 CTTCATGTTAGTATGCCGGGC 59.126 52.381 13.32 13.32 0.00 6.13
4130 4377 0.249699 TCATGTTAGTATGCCGGGCG 60.250 55.000 15.40 0.00 0.00 6.13
4131 4378 1.070786 ATGTTAGTATGCCGGGCGG 59.929 57.895 15.40 0.00 38.57 6.13
4132 4379 2.280592 GTTAGTATGCCGGGCGGG 60.281 66.667 15.40 6.75 39.58 6.13
4133 4380 2.764967 TTAGTATGCCGGGCGGGT 60.765 61.111 15.40 5.56 38.44 5.28
4134 4381 2.799452 TTAGTATGCCGGGCGGGTC 61.799 63.158 15.40 4.93 38.44 4.46
4135 4382 3.744003 TAGTATGCCGGGCGGGTCT 62.744 63.158 15.40 12.02 38.44 3.85
4136 4383 4.171103 GTATGCCGGGCGGGTCTT 62.171 66.667 15.40 6.15 38.44 3.01
4137 4384 3.857038 TATGCCGGGCGGGTCTTC 61.857 66.667 15.40 0.00 38.44 2.87
4140 4387 3.777910 GCCGGGCGGGTCTTCTTA 61.778 66.667 13.07 0.00 38.44 2.10
4141 4388 3.103091 GCCGGGCGGGTCTTCTTAT 62.103 63.158 13.07 0.00 38.44 1.73
4142 4389 1.751349 GCCGGGCGGGTCTTCTTATA 61.751 60.000 13.07 0.00 38.44 0.98
4143 4390 0.974383 CCGGGCGGGTCTTCTTATAT 59.026 55.000 2.35 0.00 0.00 0.86
4144 4391 2.173519 CCGGGCGGGTCTTCTTATATA 58.826 52.381 2.35 0.00 0.00 0.86
4145 4392 2.165845 CCGGGCGGGTCTTCTTATATAG 59.834 54.545 2.35 0.00 0.00 1.31
4146 4393 2.824341 CGGGCGGGTCTTCTTATATAGT 59.176 50.000 0.00 0.00 0.00 2.12
4147 4394 4.012374 CGGGCGGGTCTTCTTATATAGTA 58.988 47.826 0.00 0.00 0.00 1.82
4148 4395 4.142513 CGGGCGGGTCTTCTTATATAGTAC 60.143 50.000 0.00 0.00 0.00 2.73
4149 4396 5.015515 GGGCGGGTCTTCTTATATAGTACT 58.984 45.833 0.00 0.00 0.00 2.73
4150 4397 5.125257 GGGCGGGTCTTCTTATATAGTACTC 59.875 48.000 0.00 0.00 0.00 2.59
4151 4398 5.125257 GGCGGGTCTTCTTATATAGTACTCC 59.875 48.000 0.00 0.00 0.00 3.85
4152 4399 5.125257 GCGGGTCTTCTTATATAGTACTCCC 59.875 48.000 0.00 0.00 0.00 4.30
4153 4400 6.483405 CGGGTCTTCTTATATAGTACTCCCT 58.517 44.000 0.00 0.00 0.00 4.20
4154 4401 7.628234 CGGGTCTTCTTATATAGTACTCCCTA 58.372 42.308 0.00 0.00 0.00 3.53
4155 4402 7.552330 CGGGTCTTCTTATATAGTACTCCCTAC 59.448 44.444 0.00 0.00 0.00 3.18
4156 4403 7.552330 GGGTCTTCTTATATAGTACTCCCTACG 59.448 44.444 0.00 0.00 0.00 3.51
4157 4404 8.100164 GGTCTTCTTATATAGTACTCCCTACGT 58.900 40.741 0.00 0.00 0.00 3.57
4158 4405 9.150348 GTCTTCTTATATAGTACTCCCTACGTC 57.850 40.741 0.00 0.00 0.00 4.34
4159 4406 8.317679 TCTTCTTATATAGTACTCCCTACGTCC 58.682 40.741 0.00 0.00 0.00 4.79
4160 4407 6.951971 TCTTATATAGTACTCCCTACGTCCC 58.048 44.000 0.00 0.00 0.00 4.46
4161 4408 6.501805 TCTTATATAGTACTCCCTACGTCCCA 59.498 42.308 0.00 0.00 0.00 4.37
4162 4409 5.793034 ATATAGTACTCCCTACGTCCCAT 57.207 43.478 0.00 0.00 0.00 4.00
4163 4410 6.898171 ATATAGTACTCCCTACGTCCCATA 57.102 41.667 0.00 0.00 0.00 2.74
4164 4411 3.959495 AGTACTCCCTACGTCCCATAA 57.041 47.619 0.00 0.00 0.00 1.90
4165 4412 4.466255 AGTACTCCCTACGTCCCATAAT 57.534 45.455 0.00 0.00 0.00 1.28
4166 4413 5.589367 AGTACTCCCTACGTCCCATAATA 57.411 43.478 0.00 0.00 0.00 0.98
4167 4414 6.150034 AGTACTCCCTACGTCCCATAATAT 57.850 41.667 0.00 0.00 0.00 1.28
4168 4415 7.276088 AGTACTCCCTACGTCCCATAATATA 57.724 40.000 0.00 0.00 0.00 0.86
4169 4416 7.702785 AGTACTCCCTACGTCCCATAATATAA 58.297 38.462 0.00 0.00 0.00 0.98
4170 4417 8.172741 AGTACTCCCTACGTCCCATAATATAAA 58.827 37.037 0.00 0.00 0.00 1.40
4171 4418 7.860649 ACTCCCTACGTCCCATAATATAAAA 57.139 36.000 0.00 0.00 0.00 1.52
4172 4419 8.266363 ACTCCCTACGTCCCATAATATAAAAA 57.734 34.615 0.00 0.00 0.00 1.94
4173 4420 8.887393 ACTCCCTACGTCCCATAATATAAAAAT 58.113 33.333 0.00 0.00 0.00 1.82
4174 4421 9.162764 CTCCCTACGTCCCATAATATAAAAATG 57.837 37.037 0.00 0.00 0.00 2.32
4175 4422 8.662255 TCCCTACGTCCCATAATATAAAAATGT 58.338 33.333 0.00 0.00 0.00 2.71
4176 4423 9.292195 CCCTACGTCCCATAATATAAAAATGTT 57.708 33.333 0.00 0.00 0.00 2.71
4207 4454 7.524717 ACTAATGTAGTGCCAAAATTGTTCT 57.475 32.000 0.00 0.00 37.69 3.01
4208 4455 7.951591 ACTAATGTAGTGCCAAAATTGTTCTT 58.048 30.769 0.00 0.00 37.69 2.52
4209 4456 9.073475 ACTAATGTAGTGCCAAAATTGTTCTTA 57.927 29.630 0.00 0.00 37.69 2.10
4218 4465 9.260002 GTGCCAAAATTGTTCTTATATTATGGG 57.740 33.333 0.00 0.00 0.00 4.00
4219 4466 9.206690 TGCCAAAATTGTTCTTATATTATGGGA 57.793 29.630 0.00 0.00 0.00 4.37
4220 4467 9.476202 GCCAAAATTGTTCTTATATTATGGGAC 57.524 33.333 0.00 0.00 0.00 4.46
4239 4486 7.540474 TGGGACAGATGGAGTAATATACTTC 57.460 40.000 0.00 0.00 39.59 3.01
4240 4487 6.497259 TGGGACAGATGGAGTAATATACTTCC 59.503 42.308 0.00 0.00 39.59 3.46
4241 4488 6.497259 GGGACAGATGGAGTAATATACTTCCA 59.503 42.308 4.92 4.92 39.59 3.53
4242 4489 7.310113 GGGACAGATGGAGTAATATACTTCCAG 60.310 44.444 7.72 0.00 39.59 3.86
4243 4490 7.233757 GGACAGATGGAGTAATATACTTCCAGT 59.766 40.741 7.72 2.13 39.59 4.00
4244 4491 9.298250 GACAGATGGAGTAATATACTTCCAGTA 57.702 37.037 7.72 0.00 39.59 2.74
4245 4492 9.830186 ACAGATGGAGTAATATACTTCCAGTAT 57.170 33.333 2.12 2.12 43.36 2.12
4247 4494 9.482175 AGATGGAGTAATATACTTCCAGTATCC 57.518 37.037 0.00 0.00 40.37 2.59
4248 4495 8.611051 ATGGAGTAATATACTTCCAGTATCCC 57.389 38.462 0.00 0.00 40.37 3.85
4249 4496 7.541074 TGGAGTAATATACTTCCAGTATCCCA 58.459 38.462 0.00 0.00 40.37 4.37
4250 4497 8.014263 TGGAGTAATATACTTCCAGTATCCCAA 58.986 37.037 0.00 0.00 40.37 4.12
4251 4498 8.877195 GGAGTAATATACTTCCAGTATCCCAAA 58.123 37.037 0.00 0.00 40.37 3.28
4275 4522 9.946165 AAAATAAAATTATACTAAGTCAGCGGC 57.054 29.630 0.00 0.00 0.00 6.53
4276 4523 8.671384 AATAAAATTATACTAAGTCAGCGGCA 57.329 30.769 1.45 0.00 0.00 5.69
4277 4524 5.986004 AAATTATACTAAGTCAGCGGCAC 57.014 39.130 1.45 0.00 0.00 5.01
4278 4525 4.939052 ATTATACTAAGTCAGCGGCACT 57.061 40.909 1.45 0.00 0.00 4.40
4279 4526 4.730949 TTATACTAAGTCAGCGGCACTT 57.269 40.909 10.12 10.12 37.80 3.16
4280 4527 5.840243 TTATACTAAGTCAGCGGCACTTA 57.160 39.130 11.13 11.13 35.63 2.24
4281 4528 4.939052 ATACTAAGTCAGCGGCACTTAT 57.061 40.909 11.81 6.79 36.09 1.73
4282 4529 3.611766 ACTAAGTCAGCGGCACTTATT 57.388 42.857 11.81 5.62 36.09 1.40
4283 4530 3.939066 ACTAAGTCAGCGGCACTTATTT 58.061 40.909 11.81 2.50 36.09 1.40
4284 4531 4.324267 ACTAAGTCAGCGGCACTTATTTT 58.676 39.130 11.81 0.58 36.09 1.82
4285 4532 3.559238 AAGTCAGCGGCACTTATTTTG 57.441 42.857 1.45 0.00 32.08 2.44
4286 4533 2.778299 AGTCAGCGGCACTTATTTTGA 58.222 42.857 1.45 0.00 0.00 2.69
4287 4534 2.744202 AGTCAGCGGCACTTATTTTGAG 59.256 45.455 1.45 0.00 0.00 3.02
4288 4535 2.484264 GTCAGCGGCACTTATTTTGAGT 59.516 45.455 1.45 0.00 0.00 3.41
4289 4536 2.483877 TCAGCGGCACTTATTTTGAGTG 59.516 45.455 1.45 0.10 45.64 3.51
4307 4554 9.853555 TTTTGAGTGCAATAACATTATACCAAG 57.146 29.630 0.00 0.00 33.25 3.61
4308 4555 8.574251 TTGAGTGCAATAACATTATACCAAGT 57.426 30.769 0.00 0.00 0.00 3.16
4309 4556 8.208718 TGAGTGCAATAACATTATACCAAGTC 57.791 34.615 0.00 0.00 0.00 3.01
4310 4557 7.826744 TGAGTGCAATAACATTATACCAAGTCA 59.173 33.333 0.00 0.00 0.00 3.41
4311 4558 8.213518 AGTGCAATAACATTATACCAAGTCAG 57.786 34.615 0.00 0.00 0.00 3.51
4312 4559 7.829211 AGTGCAATAACATTATACCAAGTCAGT 59.171 33.333 0.00 0.00 0.00 3.41
4313 4560 7.910162 GTGCAATAACATTATACCAAGTCAGTG 59.090 37.037 0.00 0.00 0.00 3.66
4314 4561 7.826744 TGCAATAACATTATACCAAGTCAGTGA 59.173 33.333 0.00 0.00 0.00 3.41
4315 4562 8.122952 GCAATAACATTATACCAAGTCAGTGAC 58.877 37.037 15.78 15.78 0.00 3.67
4316 4563 9.161629 CAATAACATTATACCAAGTCAGTGACA 57.838 33.333 24.73 4.33 34.60 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.222113 GCTCCAGCCTTCAGGTACC 59.778 63.158 2.73 2.73 37.57 3.34
1 2 4.943822 GCTCCAGCCTTCAGGTAC 57.056 61.111 0.00 0.00 37.57 3.34
116 138 0.333312 ACCTCGGGAGATCAGTGTCT 59.667 55.000 0.00 0.00 38.80 3.41
278 304 1.630878 ACTTGCAAAAACCACCCCAAA 59.369 42.857 0.00 0.00 0.00 3.28
279 305 1.280457 ACTTGCAAAAACCACCCCAA 58.720 45.000 0.00 0.00 0.00 4.12
309 335 6.013725 TGCGTAATATAGGGACAGGATTCAAT 60.014 38.462 0.00 0.00 0.00 2.57
502 528 4.980592 TGCTGGTGGGGCTCCTGA 62.981 66.667 3.07 0.00 0.00 3.86
562 591 3.138798 GGTCGCCGGAGTAGCTCA 61.139 66.667 5.05 0.00 31.08 4.26
611 640 1.694525 GGGAGGAGGAAGGGAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
615 644 4.798682 GCGGGGAGGAGGAAGGGA 62.799 72.222 0.00 0.00 0.00 4.20
617 646 3.157949 GAGCGGGGAGGAGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
618 647 3.157949 GGAGCGGGGAGGAGGAAG 61.158 72.222 0.00 0.00 0.00 3.46
619 648 3.254035 AAGGAGCGGGGAGGAGGAA 62.254 63.158 0.00 0.00 0.00 3.36
620 649 3.680920 GAAGGAGCGGGGAGGAGGA 62.681 68.421 0.00 0.00 0.00 3.71
621 650 3.157949 GAAGGAGCGGGGAGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
622 651 3.157949 GGAAGGAGCGGGGAGGAG 61.158 72.222 0.00 0.00 0.00 3.69
654 683 1.318380 GGGGATGAGGGAAGAGGGA 59.682 63.158 0.00 0.00 0.00 4.20
655 684 1.772156 GGGGGATGAGGGAAGAGGG 60.772 68.421 0.00 0.00 0.00 4.30
801 843 6.349280 GCACTGGAAAATCATACAGCAAGTAA 60.349 38.462 0.00 0.00 36.05 2.24
811 853 5.015515 TGGAACATGCACTGGAAAATCATA 58.984 37.500 0.00 0.00 0.00 2.15
822 864 5.301551 TCATGTAAACTTTGGAACATGCACT 59.698 36.000 8.96 0.00 45.59 4.40
823 865 5.527951 TCATGTAAACTTTGGAACATGCAC 58.472 37.500 8.96 0.00 45.59 4.57
824 866 5.781210 TCATGTAAACTTTGGAACATGCA 57.219 34.783 8.96 0.00 45.59 3.96
825 867 7.384660 TCAAATCATGTAAACTTTGGAACATGC 59.615 33.333 8.96 0.00 45.59 4.06
826 868 8.815141 TCAAATCATGTAAACTTTGGAACATG 57.185 30.769 7.76 7.76 46.75 3.21
849 893 5.583061 CCAACGCACTACCTAAACAATATCA 59.417 40.000 0.00 0.00 0.00 2.15
861 905 1.226030 GACACCACCAACGCACTACC 61.226 60.000 0.00 0.00 0.00 3.18
862 906 1.554042 CGACACCACCAACGCACTAC 61.554 60.000 0.00 0.00 0.00 2.73
863 907 1.300311 CGACACCACCAACGCACTA 60.300 57.895 0.00 0.00 0.00 2.74
864 908 2.581208 TTCGACACCACCAACGCACT 62.581 55.000 0.00 0.00 0.00 4.40
1107 1156 4.661222 TGTTGTCTTCTTGCATATCCCAA 58.339 39.130 0.00 0.00 0.00 4.12
1114 1163 1.615392 GGCCTTGTTGTCTTCTTGCAT 59.385 47.619 0.00 0.00 0.00 3.96
1125 1174 2.095718 GCTTAACGAGAAGGCCTTGTTG 60.096 50.000 26.25 25.47 46.35 3.33
1140 1195 2.746362 AGAGTCATGCAGCAAGCTTAAC 59.254 45.455 0.00 0.00 45.94 2.01
1152 1207 2.191641 GGGGAGGCAGAGTCATGC 59.808 66.667 6.14 6.14 45.74 4.06
1153 1208 0.979709 TGAGGGGAGGCAGAGTCATG 60.980 60.000 0.00 0.00 0.00 3.07
1392 1450 5.722021 TCTTAATTTTCAGTTTCAGCCCC 57.278 39.130 0.00 0.00 0.00 5.80
1575 1633 2.358737 CGGAACAGCCCTGTCCAC 60.359 66.667 0.79 0.00 44.13 4.02
1605 1663 1.398390 GGAGCAACACGGATGACATTC 59.602 52.381 0.00 0.00 0.00 2.67
1611 1669 1.503542 GCTTGGAGCAACACGGATG 59.496 57.895 0.00 0.00 41.89 3.51
1676 1734 9.686683 AAGATACATTTTAGCAACAAGGTCTAT 57.313 29.630 0.00 0.00 0.00 1.98
1699 1757 3.758023 CAGGCATTGGTTACATCACAAGA 59.242 43.478 0.00 0.00 0.00 3.02
1701 1759 3.495331 ACAGGCATTGGTTACATCACAA 58.505 40.909 0.00 0.00 0.00 3.33
1722 1942 5.439721 ACCTCAATAGCATCAGCAATACAA 58.560 37.500 0.00 0.00 45.49 2.41
1740 1960 2.038557 GGTTAACCAGCAGAGAACCTCA 59.961 50.000 20.12 0.00 37.23 3.86
1754 1974 8.048514 TGACACCCTATAGTAAATTGGTTAACC 58.951 37.037 18.27 18.27 0.00 2.85
1755 1975 9.452287 TTGACACCCTATAGTAAATTGGTTAAC 57.548 33.333 0.00 0.00 0.00 2.01
1761 1981 8.786826 TGAAGTTGACACCCTATAGTAAATTG 57.213 34.615 0.00 0.00 0.00 2.32
1762 1982 9.975218 ATTGAAGTTGACACCCTATAGTAAATT 57.025 29.630 0.00 0.00 0.00 1.82
1787 2007 1.946768 CCACACGACCACAAGTGAAAT 59.053 47.619 0.94 0.00 40.56 2.17
1793 2013 1.270625 ACCATACCACACGACCACAAG 60.271 52.381 0.00 0.00 0.00 3.16
1799 2019 6.101332 TGAAAACTATACCATACCACACGAC 58.899 40.000 0.00 0.00 0.00 4.34
1897 2117 0.328450 TATGGCCCTCCTCCCACATT 60.328 55.000 0.00 0.00 33.17 2.71
1992 2212 7.603963 ACTGTGTTTACAAATCGCATATACA 57.396 32.000 0.00 0.00 36.14 2.29
2018 2238 2.239400 GAACCCAAACTCCTTTCCAGG 58.761 52.381 0.00 0.00 42.50 4.45
2039 2259 2.423577 GGCATCAACTCACCGTTAAGT 58.576 47.619 0.00 0.00 33.63 2.24
2041 2261 1.349688 AGGGCATCAACTCACCGTTAA 59.650 47.619 0.00 0.00 33.63 2.01
2046 2266 1.386533 CATCAGGGCATCAACTCACC 58.613 55.000 0.00 0.00 0.00 4.02
2058 2278 3.054434 TCAAATGTAGGACACCATCAGGG 60.054 47.826 0.00 0.00 44.81 4.45
2059 2279 4.220693 TCAAATGTAGGACACCATCAGG 57.779 45.455 0.00 0.00 42.21 3.86
2060 2280 6.823182 TGTAATCAAATGTAGGACACCATCAG 59.177 38.462 0.00 0.00 0.00 2.90
2061 2281 6.716284 TGTAATCAAATGTAGGACACCATCA 58.284 36.000 0.00 0.00 0.00 3.07
2062 2282 7.624360 TTGTAATCAAATGTAGGACACCATC 57.376 36.000 0.00 0.00 0.00 3.51
2063 2283 8.469200 CAATTGTAATCAAATGTAGGACACCAT 58.531 33.333 0.00 0.00 37.11 3.55
2064 2284 7.667635 TCAATTGTAATCAAATGTAGGACACCA 59.332 33.333 5.13 0.00 36.28 4.17
2065 2285 8.050778 TCAATTGTAATCAAATGTAGGACACC 57.949 34.615 5.13 0.00 36.28 4.16
2068 2288 9.167311 AGACTCAATTGTAATCAAATGTAGGAC 57.833 33.333 5.13 0.00 36.28 3.85
2093 2315 9.217278 CAGACCCTTGATCATATGAAAGATAAG 57.783 37.037 15.75 12.12 0.00 1.73
2140 2363 3.964688 TCTGTTAAGAGTGTCAGGACCAA 59.035 43.478 0.00 0.00 0.00 3.67
2161 2384 4.792521 ATAAGTGTCCACAGTCTGACTC 57.207 45.455 7.49 0.00 32.67 3.36
2212 2436 6.088541 TCAGGGAGTAGAGGTAGTGTAAAT 57.911 41.667 0.00 0.00 0.00 1.40
2216 2440 4.611564 AATCAGGGAGTAGAGGTAGTGT 57.388 45.455 0.00 0.00 0.00 3.55
2223 2455 6.485984 CCAATCATTCAAATCAGGGAGTAGAG 59.514 42.308 0.00 0.00 0.00 2.43
2235 2467 4.501071 GCAGTTCAGCCAATCATTCAAAT 58.499 39.130 0.00 0.00 0.00 2.32
2333 2565 3.848726 ACCAACAGTCAAAGCAAGTTTG 58.151 40.909 0.00 0.00 46.17 2.93
2341 2573 7.310664 TCGTACTTCTATACCAACAGTCAAAG 58.689 38.462 0.00 0.00 0.00 2.77
2349 2581 5.287226 CACCCATCGTACTTCTATACCAAC 58.713 45.833 0.00 0.00 0.00 3.77
2353 2585 5.526506 AACCACCCATCGTACTTCTATAC 57.473 43.478 0.00 0.00 0.00 1.47
2366 2598 6.537355 CAGTCTGATAATCATAACCACCCAT 58.463 40.000 0.00 0.00 0.00 4.00
2429 2662 3.498397 ACTCGCAACCAATTTGAGTGTAG 59.502 43.478 0.00 1.49 39.16 2.74
2448 2681 5.731957 AAAGGAACTGAACCTAGAGACTC 57.268 43.478 0.00 0.00 40.86 3.36
2457 2690 7.391148 TCATAAGCATAAAAGGAACTGAACC 57.609 36.000 0.00 0.00 40.86 3.62
2472 2705 6.491403 GTCCCCATACTGAAATTCATAAGCAT 59.509 38.462 0.00 0.00 0.00 3.79
2645 2879 4.552674 GAGGAAAGGGAGTCTTAGAGGAT 58.447 47.826 0.00 0.00 34.78 3.24
2657 2891 2.305927 GACAAGTGATGGAGGAAAGGGA 59.694 50.000 0.00 0.00 0.00 4.20
2663 2897 1.215382 CGCGACAAGTGATGGAGGA 59.785 57.895 0.00 0.00 0.00 3.71
2842 3076 6.318648 GGCAATGGAGAAAGTTGTCATATACA 59.681 38.462 0.00 0.00 35.88 2.29
3034 3268 2.423898 GGCCGAACCGATCAGGAGA 61.424 63.158 10.05 0.00 45.00 3.71
3130 3364 2.230508 CACGTTCTTGTAGACCTGCCTA 59.769 50.000 0.00 0.00 0.00 3.93
3160 3394 5.458595 TCCTTCTCCATTATGCAGTAGAGA 58.541 41.667 0.00 0.00 0.00 3.10
3283 3517 2.282958 TCCTCGGCTTCGACCAGT 60.283 61.111 0.00 0.00 38.07 4.00
3312 3546 4.129737 ACTCGACCCCGCATCACG 62.130 66.667 0.00 0.00 43.15 4.35
3314 3548 3.458163 GGACTCGACCCCGCATCA 61.458 66.667 0.00 0.00 35.37 3.07
3316 3550 0.974010 TTAAGGACTCGACCCCGCAT 60.974 55.000 0.00 0.00 35.37 4.73
3317 3551 1.186917 TTTAAGGACTCGACCCCGCA 61.187 55.000 0.00 0.00 35.37 5.69
3327 3562 1.066071 GCCGCCTCTTCTTTAAGGACT 60.066 52.381 0.00 0.00 34.35 3.85
3348 3583 1.763545 AGGAAGACGAGGCTTAATCCC 59.236 52.381 0.00 0.00 0.00 3.85
3394 3633 7.093112 ACCTAAGCTTCTGATGAGTAGTTGATT 60.093 37.037 0.00 0.00 0.00 2.57
3457 3696 7.286775 ACACAGAACTAATTTAGAGGCCAAAAA 59.713 33.333 5.01 2.13 0.00 1.94
3558 3797 6.038714 GTGATAAAAGGGAGAAACATGGCTAG 59.961 42.308 0.00 0.00 0.00 3.42
3559 3798 5.885912 GTGATAAAAGGGAGAAACATGGCTA 59.114 40.000 0.00 0.00 0.00 3.93
3564 3803 4.018779 TCCGGTGATAAAAGGGAGAAACAT 60.019 41.667 0.00 0.00 0.00 2.71
3595 3835 4.201666 GCGAGCAGTTCTCTGTAAAGATTG 60.202 45.833 0.00 0.00 43.05 2.67
3612 3852 0.670239 TTCAGCAAAGATCGCGAGCA 60.670 50.000 27.74 0.00 0.00 4.26
3617 3857 5.736358 CACTTCTATTTTCAGCAAAGATCGC 59.264 40.000 0.00 0.00 0.00 4.58
3657 3897 6.293698 CAGTGACATGAAATCCAGGATATCA 58.706 40.000 1.02 0.00 0.00 2.15
3880 4127 9.906660 CCAAAGCAAAACAAGTATACAATCTAA 57.093 29.630 5.50 0.00 0.00 2.10
3881 4128 8.519526 CCCAAAGCAAAACAAGTATACAATCTA 58.480 33.333 5.50 0.00 0.00 1.98
3882 4129 7.015195 ACCCAAAGCAAAACAAGTATACAATCT 59.985 33.333 5.50 0.00 0.00 2.40
3883 4130 7.151976 ACCCAAAGCAAAACAAGTATACAATC 58.848 34.615 5.50 0.00 0.00 2.67
3884 4131 7.061566 ACCCAAAGCAAAACAAGTATACAAT 57.938 32.000 5.50 0.00 0.00 2.71
3885 4132 6.472686 ACCCAAAGCAAAACAAGTATACAA 57.527 33.333 5.50 0.00 0.00 2.41
3886 4133 6.276847 CAACCCAAAGCAAAACAAGTATACA 58.723 36.000 5.50 0.00 0.00 2.29
3887 4134 5.176774 GCAACCCAAAGCAAAACAAGTATAC 59.823 40.000 0.00 0.00 0.00 1.47
3888 4135 5.163405 TGCAACCCAAAGCAAAACAAGTATA 60.163 36.000 0.00 0.00 37.90 1.47
3889 4136 4.126437 GCAACCCAAAGCAAAACAAGTAT 58.874 39.130 0.00 0.00 0.00 2.12
3890 4137 3.055819 TGCAACCCAAAGCAAAACAAGTA 60.056 39.130 0.00 0.00 37.90 2.24
3891 4138 2.289945 TGCAACCCAAAGCAAAACAAGT 60.290 40.909 0.00 0.00 37.90 3.16
3892 4139 2.354259 TGCAACCCAAAGCAAAACAAG 58.646 42.857 0.00 0.00 37.90 3.16
3893 4140 2.479566 TGCAACCCAAAGCAAAACAA 57.520 40.000 0.00 0.00 37.90 2.83
3894 4141 2.706339 ATGCAACCCAAAGCAAAACA 57.294 40.000 0.00 0.00 44.88 2.83
3895 4142 4.514816 ACATAATGCAACCCAAAGCAAAAC 59.485 37.500 0.00 0.00 44.88 2.43
3896 4143 4.712476 ACATAATGCAACCCAAAGCAAAA 58.288 34.783 0.00 0.00 44.88 2.44
3897 4144 4.348863 ACATAATGCAACCCAAAGCAAA 57.651 36.364 0.00 0.00 44.88 3.68
3898 4145 4.348863 AACATAATGCAACCCAAAGCAA 57.651 36.364 0.00 0.00 44.88 3.91
3899 4146 4.281941 TGTAACATAATGCAACCCAAAGCA 59.718 37.500 0.00 0.00 45.92 3.91
3900 4147 4.815269 TGTAACATAATGCAACCCAAAGC 58.185 39.130 0.00 0.00 0.00 3.51
3901 4148 6.024552 ACTGTAACATAATGCAACCCAAAG 57.975 37.500 0.00 0.00 0.00 2.77
3902 4149 7.014326 TGTTACTGTAACATAATGCAACCCAAA 59.986 33.333 25.14 1.54 43.23 3.28
3903 4150 6.490381 TGTTACTGTAACATAATGCAACCCAA 59.510 34.615 25.14 2.12 43.23 4.12
3904 4151 6.004574 TGTTACTGTAACATAATGCAACCCA 58.995 36.000 25.14 2.58 43.23 4.51
3905 4152 6.503589 TGTTACTGTAACATAATGCAACCC 57.496 37.500 25.14 0.13 43.23 4.11
3961 4208 6.479660 ACATAGCACATTCCAAAACAAGTTTG 59.520 34.615 0.00 0.00 45.36 2.93
3962 4209 6.581712 ACATAGCACATTCCAAAACAAGTTT 58.418 32.000 0.00 0.00 0.00 2.66
3963 4210 6.160576 ACATAGCACATTCCAAAACAAGTT 57.839 33.333 0.00 0.00 0.00 2.66
3964 4211 5.789643 ACATAGCACATTCCAAAACAAGT 57.210 34.783 0.00 0.00 0.00 3.16
3965 4212 7.370383 AGTAACATAGCACATTCCAAAACAAG 58.630 34.615 0.00 0.00 0.00 3.16
3966 4213 7.283625 AGTAACATAGCACATTCCAAAACAA 57.716 32.000 0.00 0.00 0.00 2.83
3967 4214 6.892658 AGTAACATAGCACATTCCAAAACA 57.107 33.333 0.00 0.00 0.00 2.83
3968 4215 8.040716 AGTAGTAACATAGCACATTCCAAAAC 57.959 34.615 0.00 0.00 0.00 2.43
3969 4216 9.378551 CTAGTAGTAACATAGCACATTCCAAAA 57.621 33.333 0.00 0.00 0.00 2.44
3970 4217 7.494625 GCTAGTAGTAACATAGCACATTCCAAA 59.505 37.037 0.00 0.00 41.25 3.28
3971 4218 6.984474 GCTAGTAGTAACATAGCACATTCCAA 59.016 38.462 0.00 0.00 41.25 3.53
3972 4219 6.323996 AGCTAGTAGTAACATAGCACATTCCA 59.676 38.462 6.25 0.00 43.49 3.53
3973 4220 6.750148 AGCTAGTAGTAACATAGCACATTCC 58.250 40.000 6.25 0.00 43.49 3.01
3974 4221 9.400638 CTTAGCTAGTAGTAACATAGCACATTC 57.599 37.037 6.25 0.00 43.49 2.67
3975 4222 8.915036 ACTTAGCTAGTAGTAACATAGCACATT 58.085 33.333 6.25 0.00 43.49 2.71
3976 4223 8.466617 ACTTAGCTAGTAGTAACATAGCACAT 57.533 34.615 6.25 0.00 43.49 3.21
3977 4224 7.876936 ACTTAGCTAGTAGTAACATAGCACA 57.123 36.000 6.25 0.00 43.49 4.57
3980 4227 9.676195 GGTTAACTTAGCTAGTAGTAACATAGC 57.324 37.037 5.42 0.00 41.79 2.97
3983 4230 8.196103 GCTGGTTAACTTAGCTAGTAGTAACAT 58.804 37.037 20.68 0.00 34.13 2.71
3984 4231 7.363268 GGCTGGTTAACTTAGCTAGTAGTAACA 60.363 40.741 24.31 4.46 34.13 2.41
3985 4232 6.977502 GGCTGGTTAACTTAGCTAGTAGTAAC 59.022 42.308 24.31 4.83 35.54 2.50
3986 4233 6.894103 AGGCTGGTTAACTTAGCTAGTAGTAA 59.106 38.462 24.31 0.00 35.54 2.24
3987 4234 6.430007 AGGCTGGTTAACTTAGCTAGTAGTA 58.570 40.000 24.31 0.00 35.54 1.82
3988 4235 5.270794 AGGCTGGTTAACTTAGCTAGTAGT 58.729 41.667 24.31 0.00 35.54 2.73
3989 4236 5.855740 AGGCTGGTTAACTTAGCTAGTAG 57.144 43.478 24.31 0.00 35.54 2.57
3990 4237 7.121382 TCTTAGGCTGGTTAACTTAGCTAGTA 58.879 38.462 24.31 15.51 35.54 1.82
3991 4238 5.956563 TCTTAGGCTGGTTAACTTAGCTAGT 59.043 40.000 24.31 16.17 39.32 2.57
3992 4239 6.466885 TCTTAGGCTGGTTAACTTAGCTAG 57.533 41.667 24.31 19.87 37.58 3.42
3993 4240 6.862469 TTCTTAGGCTGGTTAACTTAGCTA 57.138 37.500 24.31 16.07 37.58 3.32
3994 4241 5.757099 TTCTTAGGCTGGTTAACTTAGCT 57.243 39.130 24.31 16.73 37.58 3.32
3995 4242 6.812879 TTTTCTTAGGCTGGTTAACTTAGC 57.187 37.500 20.14 20.14 36.74 3.09
4029 4276 9.014297 CCACTTGAGAACTATTTTATCTTGGTT 57.986 33.333 0.00 0.00 0.00 3.67
4030 4277 7.611855 CCCACTTGAGAACTATTTTATCTTGGT 59.388 37.037 0.00 0.00 0.00 3.67
4031 4278 7.067494 CCCCACTTGAGAACTATTTTATCTTGG 59.933 40.741 0.00 0.00 0.00 3.61
4032 4279 7.829211 TCCCCACTTGAGAACTATTTTATCTTG 59.171 37.037 0.00 0.00 0.00 3.02
4033 4280 7.928873 TCCCCACTTGAGAACTATTTTATCTT 58.071 34.615 0.00 0.00 0.00 2.40
4034 4281 7.510675 TCCCCACTTGAGAACTATTTTATCT 57.489 36.000 0.00 0.00 0.00 1.98
4035 4282 8.753497 AATCCCCACTTGAGAACTATTTTATC 57.247 34.615 0.00 0.00 0.00 1.75
4036 4283 8.336235 TGAATCCCCACTTGAGAACTATTTTAT 58.664 33.333 0.00 0.00 0.00 1.40
4037 4284 7.695055 TGAATCCCCACTTGAGAACTATTTTA 58.305 34.615 0.00 0.00 0.00 1.52
4038 4285 6.552008 TGAATCCCCACTTGAGAACTATTTT 58.448 36.000 0.00 0.00 0.00 1.82
4039 4286 6.139679 TGAATCCCCACTTGAGAACTATTT 57.860 37.500 0.00 0.00 0.00 1.40
4040 4287 5.779241 TGAATCCCCACTTGAGAACTATT 57.221 39.130 0.00 0.00 0.00 1.73
4041 4288 5.779241 TTGAATCCCCACTTGAGAACTAT 57.221 39.130 0.00 0.00 0.00 2.12
4042 4289 5.073144 AGTTTGAATCCCCACTTGAGAACTA 59.927 40.000 0.00 0.00 0.00 2.24
4043 4290 4.141158 AGTTTGAATCCCCACTTGAGAACT 60.141 41.667 0.00 0.00 0.00 3.01
4044 4291 4.145052 AGTTTGAATCCCCACTTGAGAAC 58.855 43.478 0.00 0.00 0.00 3.01
4045 4292 4.453480 AGTTTGAATCCCCACTTGAGAA 57.547 40.909 0.00 0.00 0.00 2.87
4046 4293 4.141274 TGAAGTTTGAATCCCCACTTGAGA 60.141 41.667 0.00 0.00 29.43 3.27
4047 4294 4.144297 TGAAGTTTGAATCCCCACTTGAG 58.856 43.478 0.00 0.00 29.43 3.02
4048 4295 4.141274 TCTGAAGTTTGAATCCCCACTTGA 60.141 41.667 0.00 0.00 29.43 3.02
4049 4296 4.022849 GTCTGAAGTTTGAATCCCCACTTG 60.023 45.833 0.00 0.00 29.43 3.16
4050 4297 4.145052 GTCTGAAGTTTGAATCCCCACTT 58.855 43.478 0.00 0.00 32.02 3.16
4051 4298 3.498661 GGTCTGAAGTTTGAATCCCCACT 60.499 47.826 0.00 0.00 0.00 4.00
4052 4299 2.820197 GGTCTGAAGTTTGAATCCCCAC 59.180 50.000 0.00 0.00 0.00 4.61
4053 4300 2.716424 AGGTCTGAAGTTTGAATCCCCA 59.284 45.455 0.00 0.00 0.00 4.96
4054 4301 3.441500 AGGTCTGAAGTTTGAATCCCC 57.558 47.619 0.00 0.00 0.00 4.81
4055 4302 4.700692 GGTAAGGTCTGAAGTTTGAATCCC 59.299 45.833 0.00 0.00 0.00 3.85
4056 4303 4.700692 GGGTAAGGTCTGAAGTTTGAATCC 59.299 45.833 0.00 0.00 0.00 3.01
4057 4304 5.561679 AGGGTAAGGTCTGAAGTTTGAATC 58.438 41.667 0.00 0.00 0.00 2.52
4058 4305 5.561679 GAGGGTAAGGTCTGAAGTTTGAAT 58.438 41.667 0.00 0.00 0.00 2.57
4059 4306 4.502604 CGAGGGTAAGGTCTGAAGTTTGAA 60.503 45.833 0.00 0.00 0.00 2.69
4060 4307 3.006537 CGAGGGTAAGGTCTGAAGTTTGA 59.993 47.826 0.00 0.00 0.00 2.69
4061 4308 3.326747 CGAGGGTAAGGTCTGAAGTTTG 58.673 50.000 0.00 0.00 0.00 2.93
4062 4309 2.302157 CCGAGGGTAAGGTCTGAAGTTT 59.698 50.000 0.00 0.00 0.00 2.66
4063 4310 1.900486 CCGAGGGTAAGGTCTGAAGTT 59.100 52.381 0.00 0.00 0.00 2.66
4064 4311 1.076677 TCCGAGGGTAAGGTCTGAAGT 59.923 52.381 0.00 0.00 0.00 3.01
4065 4312 1.751924 CTCCGAGGGTAAGGTCTGAAG 59.248 57.143 0.00 0.00 0.00 3.02
4066 4313 1.848652 CTCCGAGGGTAAGGTCTGAA 58.151 55.000 0.00 0.00 0.00 3.02
4067 4314 0.683504 GCTCCGAGGGTAAGGTCTGA 60.684 60.000 0.00 0.00 0.00 3.27
4068 4315 1.817209 GCTCCGAGGGTAAGGTCTG 59.183 63.158 0.00 0.00 0.00 3.51
4069 4316 1.753463 CGCTCCGAGGGTAAGGTCT 60.753 63.158 4.30 0.00 0.00 3.85
4070 4317 2.806237 CGCTCCGAGGGTAAGGTC 59.194 66.667 4.30 0.00 0.00 3.85
4071 4318 3.459063 GCGCTCCGAGGGTAAGGT 61.459 66.667 13.52 0.00 0.00 3.50
4072 4319 2.240162 AAAGCGCTCCGAGGGTAAGG 62.240 60.000 12.06 0.00 0.00 2.69
4073 4320 0.806492 GAAAGCGCTCCGAGGGTAAG 60.806 60.000 12.06 0.00 0.00 2.34
4074 4321 1.217244 GAAAGCGCTCCGAGGGTAA 59.783 57.895 12.06 0.00 0.00 2.85
4075 4322 0.394762 TAGAAAGCGCTCCGAGGGTA 60.395 55.000 12.06 0.00 0.00 3.69
4076 4323 1.681327 TAGAAAGCGCTCCGAGGGT 60.681 57.895 12.06 0.00 0.00 4.34
4077 4324 1.227002 GTAGAAAGCGCTCCGAGGG 60.227 63.158 12.06 8.09 0.00 4.30
4078 4325 1.227002 GGTAGAAAGCGCTCCGAGG 60.227 63.158 12.06 0.00 0.00 4.63
4079 4326 0.526524 CAGGTAGAAAGCGCTCCGAG 60.527 60.000 12.06 1.58 0.00 4.63
4080 4327 1.511305 CAGGTAGAAAGCGCTCCGA 59.489 57.895 12.06 0.00 0.00 4.55
4081 4328 1.519455 CCAGGTAGAAAGCGCTCCG 60.519 63.158 12.06 3.73 0.00 4.63
4082 4329 1.815840 GCCAGGTAGAAAGCGCTCC 60.816 63.158 12.06 7.29 0.00 4.70
4083 4330 1.815840 GGCCAGGTAGAAAGCGCTC 60.816 63.158 12.06 0.00 0.00 5.03
4084 4331 2.124507 TTGGCCAGGTAGAAAGCGCT 62.125 55.000 2.64 2.64 0.00 5.92
4085 4332 1.674322 TTGGCCAGGTAGAAAGCGC 60.674 57.895 5.11 0.00 0.00 5.92
4086 4333 1.635663 CGTTGGCCAGGTAGAAAGCG 61.636 60.000 5.11 0.00 0.00 4.68
4087 4334 1.923227 GCGTTGGCCAGGTAGAAAGC 61.923 60.000 5.11 0.00 0.00 3.51
4088 4335 2.171635 GCGTTGGCCAGGTAGAAAG 58.828 57.895 5.11 0.00 0.00 2.62
4089 4336 4.390048 GCGTTGGCCAGGTAGAAA 57.610 55.556 5.11 0.00 0.00 2.52
4099 4346 0.878416 TAACATGAAGTGGCGTTGGC 59.122 50.000 0.00 0.00 38.90 4.52
4100 4347 2.151202 ACTAACATGAAGTGGCGTTGG 58.849 47.619 0.00 0.00 0.00 3.77
4101 4348 4.727734 GCATACTAACATGAAGTGGCGTTG 60.728 45.833 13.47 6.56 0.00 4.10
4102 4349 3.374058 GCATACTAACATGAAGTGGCGTT 59.626 43.478 13.47 0.00 0.00 4.84
4103 4350 2.936498 GCATACTAACATGAAGTGGCGT 59.064 45.455 13.47 0.00 0.00 5.68
4104 4351 2.287915 GGCATACTAACATGAAGTGGCG 59.712 50.000 13.47 5.32 32.54 5.69
4105 4352 2.287915 CGGCATACTAACATGAAGTGGC 59.712 50.000 13.47 14.82 0.00 5.01
4106 4353 2.872245 CCGGCATACTAACATGAAGTGG 59.128 50.000 13.47 8.20 0.00 4.00
4107 4354 2.872245 CCCGGCATACTAACATGAAGTG 59.128 50.000 13.47 2.33 0.00 3.16
4108 4355 2.745152 GCCCGGCATACTAACATGAAGT 60.745 50.000 3.91 5.17 0.00 3.01
4109 4356 1.873591 GCCCGGCATACTAACATGAAG 59.126 52.381 3.91 0.00 0.00 3.02
4110 4357 1.808512 CGCCCGGCATACTAACATGAA 60.809 52.381 10.77 0.00 0.00 2.57
4111 4358 0.249699 CGCCCGGCATACTAACATGA 60.250 55.000 10.77 0.00 0.00 3.07
4112 4359 1.227999 CCGCCCGGCATACTAACATG 61.228 60.000 10.77 0.00 0.00 3.21
4113 4360 1.070786 CCGCCCGGCATACTAACAT 59.929 57.895 10.77 0.00 0.00 2.71
4114 4361 2.502093 CCGCCCGGCATACTAACA 59.498 61.111 10.77 0.00 0.00 2.41
4115 4362 2.280592 CCCGCCCGGCATACTAAC 60.281 66.667 10.77 0.00 0.00 2.34
4116 4363 2.764967 ACCCGCCCGGCATACTAA 60.765 61.111 10.77 0.00 33.26 2.24
4117 4364 3.228759 GACCCGCCCGGCATACTA 61.229 66.667 10.77 0.00 33.26 1.82
4119 4366 4.171103 AAGACCCGCCCGGCATAC 62.171 66.667 10.77 0.00 33.26 2.39
4120 4367 3.857038 GAAGACCCGCCCGGCATA 61.857 66.667 10.77 0.00 33.26 3.14
4123 4370 1.751349 TATAAGAAGACCCGCCCGGC 61.751 60.000 0.00 0.00 33.26 6.13
4124 4371 0.974383 ATATAAGAAGACCCGCCCGG 59.026 55.000 0.00 0.00 37.81 5.73
4125 4372 2.824341 ACTATATAAGAAGACCCGCCCG 59.176 50.000 0.00 0.00 0.00 6.13
4126 4373 5.015515 AGTACTATATAAGAAGACCCGCCC 58.984 45.833 0.00 0.00 0.00 6.13
4127 4374 5.125257 GGAGTACTATATAAGAAGACCCGCC 59.875 48.000 0.00 0.00 0.00 6.13
4128 4375 5.125257 GGGAGTACTATATAAGAAGACCCGC 59.875 48.000 0.00 0.00 0.00 6.13
4129 4376 6.483405 AGGGAGTACTATATAAGAAGACCCG 58.517 44.000 0.00 0.00 35.73 5.28
4130 4377 7.552330 CGTAGGGAGTACTATATAAGAAGACCC 59.448 44.444 0.00 0.00 33.09 4.46
4131 4378 8.100164 ACGTAGGGAGTACTATATAAGAAGACC 58.900 40.741 0.00 0.00 0.00 3.85
4132 4379 9.150348 GACGTAGGGAGTACTATATAAGAAGAC 57.850 40.741 0.00 0.00 0.00 3.01
4133 4380 8.317679 GGACGTAGGGAGTACTATATAAGAAGA 58.682 40.741 0.00 0.00 0.00 2.87
4134 4381 7.552330 GGGACGTAGGGAGTACTATATAAGAAG 59.448 44.444 0.00 0.00 0.00 2.85
4135 4382 7.017551 TGGGACGTAGGGAGTACTATATAAGAA 59.982 40.741 0.00 0.00 0.00 2.52
4136 4383 6.501805 TGGGACGTAGGGAGTACTATATAAGA 59.498 42.308 0.00 0.00 0.00 2.10
4137 4384 6.715280 TGGGACGTAGGGAGTACTATATAAG 58.285 44.000 0.00 0.00 0.00 1.73
4138 4385 6.702449 TGGGACGTAGGGAGTACTATATAA 57.298 41.667 0.00 0.00 0.00 0.98
4139 4386 6.898171 ATGGGACGTAGGGAGTACTATATA 57.102 41.667 0.00 0.00 0.00 0.86
4140 4387 5.793034 ATGGGACGTAGGGAGTACTATAT 57.207 43.478 0.00 0.00 0.00 0.86
4141 4388 6.702449 TTATGGGACGTAGGGAGTACTATA 57.298 41.667 0.00 0.00 0.00 1.31
4142 4389 5.589367 TTATGGGACGTAGGGAGTACTAT 57.411 43.478 0.00 0.00 0.00 2.12
4143 4390 5.589367 ATTATGGGACGTAGGGAGTACTA 57.411 43.478 0.00 0.00 0.00 1.82
4144 4391 3.959495 TTATGGGACGTAGGGAGTACT 57.041 47.619 0.00 0.00 0.00 2.73
4145 4392 7.944729 TTATATTATGGGACGTAGGGAGTAC 57.055 40.000 0.00 0.00 0.00 2.73
4146 4393 8.954834 TTTTATATTATGGGACGTAGGGAGTA 57.045 34.615 0.00 0.00 0.00 2.59
4147 4394 7.860649 TTTTATATTATGGGACGTAGGGAGT 57.139 36.000 0.00 0.00 0.00 3.85
4148 4395 9.162764 CATTTTTATATTATGGGACGTAGGGAG 57.837 37.037 0.00 0.00 0.00 4.30
4149 4396 8.662255 ACATTTTTATATTATGGGACGTAGGGA 58.338 33.333 0.00 0.00 0.00 4.20
4150 4397 8.857694 ACATTTTTATATTATGGGACGTAGGG 57.142 34.615 0.00 0.00 0.00 3.53
4181 4428 9.243105 AGAACAATTTTGGCACTACATTAGTAT 57.757 29.630 0.00 0.00 37.23 2.12
4182 4429 8.630054 AGAACAATTTTGGCACTACATTAGTA 57.370 30.769 0.00 0.00 37.23 1.82
4183 4430 7.524717 AGAACAATTTTGGCACTACATTAGT 57.475 32.000 0.00 0.00 40.28 2.24
4192 4439 9.260002 CCCATAATATAAGAACAATTTTGGCAC 57.740 33.333 0.00 0.00 33.14 5.01
4193 4440 9.206690 TCCCATAATATAAGAACAATTTTGGCA 57.793 29.630 0.00 0.00 33.14 4.92
4194 4441 9.476202 GTCCCATAATATAAGAACAATTTTGGC 57.524 33.333 0.00 0.00 33.14 4.52
4200 4447 9.745018 CCATCTGTCCCATAATATAAGAACAAT 57.255 33.333 0.00 0.00 0.00 2.71
4201 4448 8.944138 TCCATCTGTCCCATAATATAAGAACAA 58.056 33.333 0.00 0.00 0.00 2.83
4202 4449 8.504811 TCCATCTGTCCCATAATATAAGAACA 57.495 34.615 0.00 0.00 0.00 3.18
4203 4450 8.598041 ACTCCATCTGTCCCATAATATAAGAAC 58.402 37.037 0.00 0.00 0.00 3.01
4204 4451 8.742125 ACTCCATCTGTCCCATAATATAAGAA 57.258 34.615 0.00 0.00 0.00 2.52
4205 4452 9.837681 TTACTCCATCTGTCCCATAATATAAGA 57.162 33.333 0.00 0.00 0.00 2.10
4211 4458 9.790297 AGTATATTACTCCATCTGTCCCATAAT 57.210 33.333 0.00 0.00 32.47 1.28
4212 4459 9.615660 AAGTATATTACTCCATCTGTCCCATAA 57.384 33.333 0.00 0.00 38.26 1.90
4213 4460 9.256228 GAAGTATATTACTCCATCTGTCCCATA 57.744 37.037 0.00 0.00 38.26 2.74
4214 4461 7.181125 GGAAGTATATTACTCCATCTGTCCCAT 59.819 40.741 0.00 0.00 38.26 4.00
4215 4462 6.497259 GGAAGTATATTACTCCATCTGTCCCA 59.503 42.308 0.00 0.00 38.26 4.37
4216 4463 6.497259 TGGAAGTATATTACTCCATCTGTCCC 59.503 42.308 0.00 0.00 38.26 4.46
4217 4464 7.540474 TGGAAGTATATTACTCCATCTGTCC 57.460 40.000 0.00 0.00 38.26 4.02
4249 4496 9.946165 GCCGCTGACTTAGTATAATTTTATTTT 57.054 29.630 0.00 0.00 0.00 1.82
4250 4497 9.116067 TGCCGCTGACTTAGTATAATTTTATTT 57.884 29.630 0.00 0.00 0.00 1.40
4251 4498 8.557029 GTGCCGCTGACTTAGTATAATTTTATT 58.443 33.333 0.00 0.00 0.00 1.40
4252 4499 7.931948 AGTGCCGCTGACTTAGTATAATTTTAT 59.068 33.333 0.00 0.00 0.00 1.40
4253 4500 7.270047 AGTGCCGCTGACTTAGTATAATTTTA 58.730 34.615 0.00 0.00 0.00 1.52
4254 4501 6.113411 AGTGCCGCTGACTTAGTATAATTTT 58.887 36.000 0.00 0.00 0.00 1.82
4255 4502 5.671493 AGTGCCGCTGACTTAGTATAATTT 58.329 37.500 0.00 0.00 0.00 1.82
4256 4503 5.277857 AGTGCCGCTGACTTAGTATAATT 57.722 39.130 0.00 0.00 0.00 1.40
4257 4504 4.939052 AGTGCCGCTGACTTAGTATAAT 57.061 40.909 0.00 0.00 0.00 1.28
4258 4505 4.730949 AAGTGCCGCTGACTTAGTATAA 57.269 40.909 0.00 0.00 31.72 0.98
4259 4506 6.401047 AATAAGTGCCGCTGACTTAGTATA 57.599 37.500 8.71 0.00 38.87 1.47
4260 4507 4.939052 ATAAGTGCCGCTGACTTAGTAT 57.061 40.909 8.71 0.00 38.87 2.12
4261 4508 4.730949 AATAAGTGCCGCTGACTTAGTA 57.269 40.909 8.71 0.00 38.87 1.82
4262 4509 3.611766 AATAAGTGCCGCTGACTTAGT 57.388 42.857 8.71 4.28 38.87 2.24
4263 4510 4.391830 TCAAAATAAGTGCCGCTGACTTAG 59.608 41.667 8.71 0.00 38.87 2.18
4264 4511 4.320023 TCAAAATAAGTGCCGCTGACTTA 58.680 39.130 5.94 5.94 39.60 2.24
4265 4512 3.146066 TCAAAATAAGTGCCGCTGACTT 58.854 40.909 2.07 2.07 37.43 3.01
4266 4513 2.744202 CTCAAAATAAGTGCCGCTGACT 59.256 45.455 0.00 0.00 0.00 3.41
4267 4514 2.484264 ACTCAAAATAAGTGCCGCTGAC 59.516 45.455 0.00 0.00 0.00 3.51
4268 4515 2.483877 CACTCAAAATAAGTGCCGCTGA 59.516 45.455 0.00 0.00 37.88 4.26
4269 4516 2.855180 CACTCAAAATAAGTGCCGCTG 58.145 47.619 0.00 0.00 37.88 5.18
4281 4528 9.853555 CTTGGTATAATGTTATTGCACTCAAAA 57.146 29.630 0.00 0.00 35.56 2.44
4282 4529 9.019656 ACTTGGTATAATGTTATTGCACTCAAA 57.980 29.630 0.00 0.00 35.56 2.69
4283 4530 8.574251 ACTTGGTATAATGTTATTGCACTCAA 57.426 30.769 0.00 0.00 36.51 3.02
4284 4531 7.826744 TGACTTGGTATAATGTTATTGCACTCA 59.173 33.333 0.00 0.00 0.00 3.41
4285 4532 8.208718 TGACTTGGTATAATGTTATTGCACTC 57.791 34.615 0.00 0.00 0.00 3.51
4286 4533 7.829211 ACTGACTTGGTATAATGTTATTGCACT 59.171 33.333 0.00 0.00 0.00 4.40
4287 4534 7.910162 CACTGACTTGGTATAATGTTATTGCAC 59.090 37.037 0.00 0.00 0.00 4.57
4288 4535 7.826744 TCACTGACTTGGTATAATGTTATTGCA 59.173 33.333 0.00 0.00 0.00 4.08
4289 4536 8.122952 GTCACTGACTTGGTATAATGTTATTGC 58.877 37.037 1.58 0.00 0.00 3.56
4290 4537 9.161629 TGTCACTGACTTGGTATAATGTTATTG 57.838 33.333 10.54 0.00 33.15 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.