Multiple sequence alignment - TraesCS7D01G482900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G482900 chr7D 100.000 5110 0 0 1 5110 593126454 593121345 0.000000e+00 9437.0
1 TraesCS7D01G482900 chr7A 92.991 3096 112 33 2069 5110 685836045 685833001 0.000000e+00 4418.0
2 TraesCS7D01G482900 chr7A 98.103 580 10 1 956 1534 685837141 685836562 0.000000e+00 1009.0
3 TraesCS7D01G482900 chr7A 97.876 565 11 1 1 564 685838292 685837728 0.000000e+00 976.0
4 TraesCS7D01G482900 chr7A 81.985 927 133 26 13 912 685839401 685838482 0.000000e+00 756.0
5 TraesCS7D01G482900 chr7A 93.293 492 22 5 1581 2069 685836562 685836079 0.000000e+00 715.0
6 TraesCS7D01G482900 chr7A 99.150 353 3 0 563 915 685837623 685837271 2.010000e-178 636.0
7 TraesCS7D01G482900 chr7B 96.143 1115 32 5 956 2069 668025906 668027010 0.000000e+00 1810.0
8 TraesCS7D01G482900 chr7B 92.887 1209 67 9 2991 4193 668028084 668029279 0.000000e+00 1738.0
9 TraesCS7D01G482900 chr7B 96.336 928 31 1 2069 2993 668027044 668027971 0.000000e+00 1522.0
10 TraesCS7D01G482900 chr7B 95.965 917 28 4 5 915 668024863 668025776 0.000000e+00 1480.0
11 TraesCS7D01G482900 chr7B 86.311 694 29 10 4235 4904 668029289 668029940 0.000000e+00 695.0
12 TraesCS7D01G482900 chr7B 96.721 183 6 0 4928 5110 668029936 668030118 6.430000e-79 305.0
13 TraesCS7D01G482900 chr6B 95.918 49 2 0 907 955 487209572 487209524 4.240000e-11 80.5
14 TraesCS7D01G482900 chr5D 95.918 49 2 0 907 955 15553520 15553472 4.240000e-11 80.5
15 TraesCS7D01G482900 chr5D 97.778 45 1 0 911 955 381151916 381151960 1.530000e-10 78.7
16 TraesCS7D01G482900 chr3B 97.826 46 1 0 914 959 728582905 728582860 4.240000e-11 80.5
17 TraesCS7D01G482900 chr1B 95.918 49 2 0 908 956 667910202 667910250 4.240000e-11 80.5
18 TraesCS7D01G482900 chr1A 96.000 50 1 1 906 955 209362159 209362111 4.240000e-11 80.5
19 TraesCS7D01G482900 chrUn 94.231 52 1 1 910 961 37028997 37028948 1.530000e-10 78.7
20 TraesCS7D01G482900 chr5B 97.778 45 1 0 910 954 655891157 655891201 1.530000e-10 78.7
21 TraesCS7D01G482900 chr2D 92.593 54 3 1 909 961 599897424 599897371 5.490000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G482900 chr7D 593121345 593126454 5109 True 9437.000000 9437 100.000000 1 5110 1 chr7D.!!$R1 5109
1 TraesCS7D01G482900 chr7A 685833001 685839401 6400 True 1418.333333 4418 93.899667 1 5110 6 chr7A.!!$R1 5109
2 TraesCS7D01G482900 chr7B 668024863 668030118 5255 False 1258.333333 1810 94.060500 5 5110 6 chr7B.!!$F1 5105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 1640 0.038166 ACTGGCATTGGGACGTGAAT 59.962 50.0 0.00 0.0 0.00 2.57 F
1059 2370 0.740868 ATGATTCTGTGCGTGTCCCG 60.741 55.0 0.00 0.0 40.40 5.14 F
2651 4004 0.250640 CTGTGAGTGCTCTTTGCCCT 60.251 55.0 0.68 0.0 42.00 5.19 F
3941 5413 0.037232 CCAACTCTCCGAGGACAACC 60.037 60.0 0.00 0.0 33.35 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 2857 5.258051 AGGCCCAATTTTTCGTATTGTAGA 58.742 37.500 0.00 0.0 32.38 2.59 R
2711 4064 1.071071 CGTTAGACAAACAGGGGTGGA 59.929 52.381 0.00 0.0 38.03 4.02 R
4038 5513 0.659957 GGATCTTGCTTGTCCATCGC 59.340 55.000 0.00 0.0 32.23 4.58 R
4840 6364 1.004440 GAGTGTGTCAGTCAGGGGC 60.004 63.158 0.44 0.0 34.29 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 1231 3.193691 CCTGTTCGAGTGTCTTCTATGGT 59.806 47.826 0.00 0.00 0.00 3.55
129 1239 1.553248 TGTCTTCTATGGTGAACCCCG 59.447 52.381 0.00 0.00 34.29 5.73
191 1301 3.061231 ATGCCGTGCCGCATCAAA 61.061 55.556 0.00 0.00 46.55 2.69
350 1461 1.066605 CGGTCCACACTAGGGATTACG 59.933 57.143 0.00 0.00 36.67 3.18
378 1489 2.988010 AATCTGATGCTCCACGCTTA 57.012 45.000 0.00 0.00 40.11 3.09
529 1640 0.038166 ACTGGCATTGGGACGTGAAT 59.962 50.000 0.00 0.00 0.00 2.57
533 1644 2.288702 TGGCATTGGGACGTGAATTTTG 60.289 45.455 0.00 0.00 0.00 2.44
777 1999 5.934625 AGCCTCTTAGTTTCCGCATATTATG 59.065 40.000 0.00 0.00 0.00 1.90
781 2003 5.468746 TCTTAGTTTCCGCATATTATGGCAC 59.531 40.000 5.84 0.00 0.00 5.01
919 2141 2.356667 CCCCTTTGGTGCTCCCTC 59.643 66.667 1.59 0.00 0.00 4.30
920 2142 2.234296 CCCCTTTGGTGCTCCCTCT 61.234 63.158 1.59 0.00 0.00 3.69
921 2143 1.001641 CCCTTTGGTGCTCCCTCTG 60.002 63.158 1.59 0.00 0.00 3.35
923 2145 0.984230 CCTTTGGTGCTCCCTCTGTA 59.016 55.000 1.59 0.00 0.00 2.74
924 2146 1.351017 CCTTTGGTGCTCCCTCTGTAA 59.649 52.381 1.59 0.00 0.00 2.41
925 2147 2.224769 CCTTTGGTGCTCCCTCTGTAAA 60.225 50.000 1.59 0.00 0.00 2.01
926 2148 2.859165 TTGGTGCTCCCTCTGTAAAG 57.141 50.000 1.59 0.00 0.00 1.85
928 2150 2.334977 TGGTGCTCCCTCTGTAAAGAA 58.665 47.619 1.59 0.00 0.00 2.52
929 2151 2.708861 TGGTGCTCCCTCTGTAAAGAAA 59.291 45.455 1.59 0.00 0.00 2.52
931 2153 4.534500 TGGTGCTCCCTCTGTAAAGAAATA 59.466 41.667 1.59 0.00 0.00 1.40
933 2155 6.385759 TGGTGCTCCCTCTGTAAAGAAATATA 59.614 38.462 1.59 0.00 0.00 0.86
935 2157 7.442666 GGTGCTCCCTCTGTAAAGAAATATAAG 59.557 40.741 0.00 0.00 0.00 1.73
936 2158 8.204836 GTGCTCCCTCTGTAAAGAAATATAAGA 58.795 37.037 0.00 0.00 0.00 2.10
937 2159 8.424918 TGCTCCCTCTGTAAAGAAATATAAGAG 58.575 37.037 0.00 0.00 0.00 2.85
938 2160 7.386573 GCTCCCTCTGTAAAGAAATATAAGAGC 59.613 40.741 0.00 0.00 33.56 4.09
939 2161 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
940 2162 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
942 2164 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
1028 2339 4.511826 CCTACCTGGCGATTTCTTGTATTC 59.488 45.833 0.00 0.00 0.00 1.75
1059 2370 0.740868 ATGATTCTGTGCGTGTCCCG 60.741 55.000 0.00 0.00 40.40 5.14
1100 2411 2.201830 CCAGGTATCCCACAACCCTTA 58.798 52.381 0.00 0.00 36.34 2.69
1190 2501 7.923878 GTGATTCCTCAGTTATCTAAGGACTTC 59.076 40.741 0.00 0.00 37.80 3.01
1198 2509 5.191722 AGTTATCTAAGGACTTCCCATTGCA 59.808 40.000 0.00 0.00 37.41 4.08
1501 2812 5.978919 TCACACTGATGAAACAAAATGAAGC 59.021 36.000 0.00 0.00 0.00 3.86
1571 2883 6.538945 ACAATACGAAAAATTGGGCCTATT 57.461 33.333 7.42 7.42 38.41 1.73
2083 3433 6.762702 TGTGTACTTCATCAATGCATCAAT 57.237 33.333 0.00 0.00 0.00 2.57
2248 3598 3.371285 GTGACTGGAAACTCCTTTATCGC 59.629 47.826 0.00 0.00 37.46 4.58
2251 3601 4.589908 ACTGGAAACTCCTTTATCGCATT 58.410 39.130 0.00 0.00 37.46 3.56
2649 4002 1.860484 GCCTGTGAGTGCTCTTTGCC 61.860 60.000 0.68 0.00 42.00 4.52
2650 4003 1.239968 CCTGTGAGTGCTCTTTGCCC 61.240 60.000 0.68 0.00 42.00 5.36
2651 4004 0.250640 CTGTGAGTGCTCTTTGCCCT 60.251 55.000 0.68 0.00 42.00 5.19
2653 4006 0.595095 GTGAGTGCTCTTTGCCCTTG 59.405 55.000 0.68 0.00 42.00 3.61
2711 4064 5.163195 ACTCTCAAGCCCATTCGGTTATATT 60.163 40.000 0.00 0.00 0.00 1.28
2730 4083 2.943036 TCCACCCCTGTTTGTCTAAC 57.057 50.000 0.00 0.00 37.26 2.34
2850 4203 7.247728 TCCGATACACATCACAAAATTTAAGC 58.752 34.615 0.00 0.00 0.00 3.09
2917 4270 4.094090 CTTCTGCAATTCCTTGAGAAGC 57.906 45.455 0.00 0.00 38.41 3.86
2937 4290 2.592459 GCGCCGTTAAGCTTTTGTATTG 59.408 45.455 3.20 0.00 0.00 1.90
3301 4769 4.881019 ATCATAGGATCTGAAGAACGGG 57.119 45.455 0.00 0.00 0.00 5.28
3319 4787 2.293399 CGGGTTTCCTTTGAAGTTGGAG 59.707 50.000 0.00 0.00 0.00 3.86
3325 4793 4.447138 TCCTTTGAAGTTGGAGCCTTTA 57.553 40.909 0.00 0.00 0.00 1.85
3415 4883 5.247862 TCTTTGATTTGCTATGTCTGCTGA 58.752 37.500 0.00 0.00 0.00 4.26
3464 4935 1.067516 GATGCTGTTGGTTGCTGTTGT 59.932 47.619 0.00 0.00 0.00 3.32
3488 4959 3.368236 CAGATGCTGCATATGATGACTCG 59.632 47.826 28.12 2.27 35.38 4.18
3584 5055 7.336931 ACCTATTTCATTATTGTGGTGACTGTC 59.663 37.037 0.00 0.00 0.00 3.51
3657 5129 3.732721 GGATCGAAATTTATGCTTGCAGC 59.267 43.478 0.87 1.70 42.82 5.25
3760 5232 4.112634 CAATTCAGCAATGCCTCATTCAG 58.887 43.478 0.00 0.00 31.05 3.02
3812 5284 6.434028 TGAAGTGCAATTTCTACCATTAGCTT 59.566 34.615 0.00 0.00 33.20 3.74
3820 5292 3.869065 TCTACCATTAGCTTCCGTTTGG 58.131 45.455 0.00 0.00 0.00 3.28
3821 5293 2.579410 ACCATTAGCTTCCGTTTGGT 57.421 45.000 0.00 0.00 36.30 3.67
3822 5294 3.706600 ACCATTAGCTTCCGTTTGGTA 57.293 42.857 0.00 0.00 35.77 3.25
3941 5413 0.037232 CCAACTCTCCGAGGACAACC 60.037 60.000 0.00 0.00 33.35 3.77
4038 5513 0.525668 AGAGCAAACGACGCCGATAG 60.526 55.000 0.00 0.00 39.50 2.08
4195 5670 0.172578 TACCGTTGATCCTGACTGCG 59.827 55.000 0.00 0.00 0.00 5.18
4196 5671 2.456119 CCGTTGATCCTGACTGCGC 61.456 63.158 0.00 0.00 0.00 6.09
4207 5682 2.196749 CTGACTGCGCATATTTCTCGT 58.803 47.619 12.24 1.45 0.00 4.18
4209 5684 3.776340 TGACTGCGCATATTTCTCGTTA 58.224 40.909 12.24 0.00 0.00 3.18
4218 5693 5.333339 CGCATATTTCTCGTTACCATTCAGG 60.333 44.000 0.00 0.00 45.67 3.86
4221 5696 2.961526 TCTCGTTACCATTCAGGCTC 57.038 50.000 0.00 0.00 43.14 4.70
4223 5698 0.892755 TCGTTACCATTCAGGCTCGT 59.107 50.000 0.00 0.00 43.14 4.18
4259 5741 3.445096 GGTGGCAAGAAATCTGCAGTATT 59.555 43.478 14.67 9.98 0.00 1.89
4307 5789 1.135721 GGACTGCCATGGAATTTCAGC 59.864 52.381 18.40 8.72 29.12 4.26
4316 5798 1.623311 TGGAATTTCAGCGAGGACTGA 59.377 47.619 0.00 0.00 44.84 3.41
4328 5810 3.304659 GCGAGGACTGATCTGAATCTCTC 60.305 52.174 6.60 4.97 32.75 3.20
4363 5847 2.169769 CCTGCTGGACGGGTTATTTAGA 59.830 50.000 2.92 0.00 40.35 2.10
4513 6002 8.937634 ATTCAGTTCCATTTTATTCATCTTGC 57.062 30.769 0.00 0.00 0.00 4.01
4525 6014 0.110509 CATCTTGCGTGACACTGCAC 60.111 55.000 19.76 2.17 41.57 4.57
4527 6016 1.153597 TCTTGCGTGACACTGCACTG 61.154 55.000 19.76 16.08 41.57 3.66
4532 6021 1.821241 CGTGACACTGCACTGGTTCG 61.821 60.000 3.68 0.00 36.65 3.95
4535 6024 2.591429 CACTGCACTGGTTCGGCA 60.591 61.111 0.00 0.00 35.96 5.69
4553 6042 3.350833 GGCATTGAACTTCTCTCATGGT 58.649 45.455 0.00 0.00 0.00 3.55
4617 6107 1.354040 AGCTTCGATTTGCTCTGTCG 58.646 50.000 2.82 0.00 33.90 4.35
4663 6170 2.292802 GATCTTTTGACGCGCCGGTC 62.293 60.000 5.73 4.97 37.45 4.79
4687 6194 5.518128 CGTAGTTCAGATTCAGATCAAGTGG 59.482 44.000 0.00 0.00 34.60 4.00
4840 6364 1.687563 GTATCCCCAAAACCCCATCG 58.312 55.000 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 1231 0.404040 AATTTGAGGAGCGGGGTTCA 59.596 50.000 0.00 0.00 0.00 3.18
129 1239 5.123979 ACTTGGAATTCGTAATTTGAGGAGC 59.876 40.000 0.00 0.00 0.00 4.70
191 1301 4.853924 ACGCAGAAATTTTGGACAGAAT 57.146 36.364 0.00 0.00 0.00 2.40
350 1461 1.943340 GAGCATCAGATTTCCCGTTCC 59.057 52.381 0.00 0.00 33.17 3.62
378 1489 9.725019 TTTCTTCTACACAGATATGAAACATGT 57.275 29.630 0.00 0.00 0.00 3.21
777 1999 4.034975 GTCAGAATGCTAGAAGATTGTGCC 59.965 45.833 0.00 0.00 34.76 5.01
781 2003 7.789273 ATTCTGTCAGAATGCTAGAAGATTG 57.211 36.000 24.26 0.00 42.90 2.67
915 2137 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
916 2138 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
929 2151 9.413048 GCTTTAGTGATCTAAACGCTCTTATAT 57.587 33.333 0.00 0.00 40.05 0.86
931 2153 7.493367 AGCTTTAGTGATCTAAACGCTCTTAT 58.507 34.615 13.37 0.00 41.19 1.73
933 2155 5.725362 AGCTTTAGTGATCTAAACGCTCTT 58.275 37.500 13.37 0.00 41.19 2.85
935 2157 6.752815 ACTAAGCTTTAGTGATCTAAACGCTC 59.247 38.462 3.20 3.18 42.43 5.03
936 2158 6.631962 ACTAAGCTTTAGTGATCTAAACGCT 58.368 36.000 3.20 13.37 43.52 5.07
937 2159 6.889019 ACTAAGCTTTAGTGATCTAAACGC 57.111 37.500 3.20 0.00 40.05 4.84
938 2160 7.674240 GCCAACTAAGCTTTAGTGATCTAAACG 60.674 40.741 3.20 0.00 40.05 3.60
939 2161 7.119262 TGCCAACTAAGCTTTAGTGATCTAAAC 59.881 37.037 3.20 0.00 40.05 2.01
940 2162 7.165485 TGCCAACTAAGCTTTAGTGATCTAAA 58.835 34.615 3.20 0.00 41.87 1.85
942 2164 6.294361 TGCCAACTAAGCTTTAGTGATCTA 57.706 37.500 3.20 0.00 0.00 1.98
943 2165 5.165961 TGCCAACTAAGCTTTAGTGATCT 57.834 39.130 3.20 0.00 0.00 2.75
944 2166 6.442513 AATGCCAACTAAGCTTTAGTGATC 57.557 37.500 3.20 0.00 0.00 2.92
945 2167 9.799106 ATATAATGCCAACTAAGCTTTAGTGAT 57.201 29.630 3.20 0.00 34.54 3.06
948 2170 9.627123 TGAATATAATGCCAACTAAGCTTTAGT 57.373 29.630 3.20 3.45 34.54 2.24
950 2172 8.567948 GCTGAATATAATGCCAACTAAGCTTTA 58.432 33.333 3.20 0.00 35.24 1.85
951 2173 7.068593 TGCTGAATATAATGCCAACTAAGCTTT 59.931 33.333 3.20 0.00 0.00 3.51
952 2174 6.547141 TGCTGAATATAATGCCAACTAAGCTT 59.453 34.615 3.48 3.48 0.00 3.74
953 2175 6.064060 TGCTGAATATAATGCCAACTAAGCT 58.936 36.000 0.00 0.00 0.00 3.74
1059 2370 6.416750 CCTGGTTTAACTGATTGTTTTTCGAC 59.583 38.462 0.00 0.00 39.89 4.20
1545 2857 5.258051 AGGCCCAATTTTTCGTATTGTAGA 58.742 37.500 0.00 0.00 32.38 2.59
1554 2866 5.351189 CCTTTTGAATAGGCCCAATTTTTCG 59.649 40.000 0.00 0.00 0.00 3.46
1571 2883 5.423886 GGTCAAACCAAACAATCCTTTTGA 58.576 37.500 0.00 0.00 38.42 2.69
2083 3433 7.085116 TCGAGAAAACACAAAAGCTTTGTTTA 58.915 30.769 21.90 8.61 41.48 2.01
2251 3601 9.656323 AGTTTGTCCAGAATAGAGGTATATGTA 57.344 33.333 0.00 0.00 0.00 2.29
2649 4002 6.594937 CACATGACAAATTAATTTCCCCAAGG 59.405 38.462 10.53 8.17 0.00 3.61
2650 4003 7.160726 ACACATGACAAATTAATTTCCCCAAG 58.839 34.615 10.53 8.37 0.00 3.61
2651 4004 7.072263 ACACATGACAAATTAATTTCCCCAA 57.928 32.000 10.53 0.00 0.00 4.12
2653 4006 7.710475 CCATACACATGACAAATTAATTTCCCC 59.290 37.037 10.53 4.10 33.67 4.81
2711 4064 1.071071 CGTTAGACAAACAGGGGTGGA 59.929 52.381 0.00 0.00 38.03 4.02
2730 4083 1.669115 CCTGCAGTCCAGTGTTCCG 60.669 63.158 13.81 0.00 40.06 4.30
2850 4203 6.797033 GGACGATTTCTAACAACATCAACTTG 59.203 38.462 0.00 0.00 0.00 3.16
2917 4270 2.592459 GCAATACAAAAGCTTAACGGCG 59.408 45.455 4.80 4.80 37.29 6.46
3035 4503 8.680903 CATCTGATAACAGTTTATTGCCTTCTT 58.319 33.333 0.00 0.00 43.81 2.52
3237 4705 5.812127 TCATGTCAGCACACATTACTACATC 59.188 40.000 0.00 0.00 34.60 3.06
3301 4769 2.959030 AGGCTCCAACTTCAAAGGAAAC 59.041 45.455 0.00 0.00 31.35 2.78
3319 4787 5.311844 AGGGAATAAGACCATCTAAAGGC 57.688 43.478 0.00 0.00 0.00 4.35
3325 4793 4.228210 TGCTCAAAGGGAATAAGACCATCT 59.772 41.667 0.00 0.00 0.00 2.90
3415 4883 9.745018 ATGTTAGGCATCATGCTTATTACTAAT 57.255 29.630 10.11 0.00 44.28 1.73
3488 4959 8.655651 TGAACATTAATTTTGAAACAGAACCC 57.344 30.769 0.00 0.00 0.00 4.11
3657 5129 4.659088 CTGACAACTTTGCATGATAGCAG 58.341 43.478 0.00 0.00 46.54 4.24
3727 5199 5.220912 GCATTGCTGAATTGCTGATACAGTA 60.221 40.000 0.16 0.00 33.43 2.74
3791 5263 5.582550 GGAAGCTAATGGTAGAAATTGCAC 58.417 41.667 0.00 0.00 0.00 4.57
3812 5284 7.557724 TCTTAACATCACATATACCAAACGGA 58.442 34.615 0.00 0.00 0.00 4.69
3822 5294 8.871125 CCCTAGTAACCTCTTAACATCACATAT 58.129 37.037 0.00 0.00 0.00 1.78
3911 5383 2.675348 CGGAGAGTTGGATTGCTTTCTC 59.325 50.000 0.00 0.00 0.00 2.87
3941 5413 2.190578 GAATCTGTGGCCCTCGGG 59.809 66.667 0.00 0.00 38.57 5.14
3951 5423 2.514592 CATGGCGGGCGAATCTGT 60.515 61.111 0.00 0.00 0.00 3.41
4006 5478 3.796178 CGTTTGCTCTAGCTTGATCTCTC 59.204 47.826 0.00 0.00 42.66 3.20
4038 5513 0.659957 GGATCTTGCTTGTCCATCGC 59.340 55.000 0.00 0.00 32.23 4.58
4108 5583 2.711009 TGAACAGGATCCAGGACAAGTT 59.289 45.455 15.82 6.57 0.00 2.66
4195 5670 5.560953 GCCTGAATGGTAACGAGAAATATGC 60.561 44.000 0.00 0.00 42.51 3.14
4196 5671 5.760253 AGCCTGAATGGTAACGAGAAATATG 59.240 40.000 0.00 0.00 42.51 1.78
4207 5682 0.892755 ACGACGAGCCTGAATGGTAA 59.107 50.000 0.00 0.00 38.35 2.85
4209 5684 1.215647 GACGACGAGCCTGAATGGT 59.784 57.895 0.00 0.00 38.35 3.55
4218 5693 3.324099 TTCAGAGGCGACGACGAGC 62.324 63.158 12.29 6.69 42.66 5.03
4221 5696 2.202492 CCTTCAGAGGCGACGACG 60.202 66.667 2.12 2.12 42.93 5.12
4259 5741 2.502947 CCTGTCAGTTCATCATCCTCCA 59.497 50.000 0.00 0.00 0.00 3.86
4307 5789 3.058983 CGAGAGATTCAGATCAGTCCTCG 60.059 52.174 0.00 0.00 35.80 4.63
4363 5847 4.228438 CCTTTCCCTTCTCCCTCTAAACAT 59.772 45.833 0.00 0.00 0.00 2.71
4500 5989 4.378356 GCAGTGTCACGCAAGATGAATAAA 60.378 41.667 12.81 0.00 43.62 1.40
4513 6002 1.821241 CGAACCAGTGCAGTGTCACG 61.821 60.000 19.93 16.36 41.61 4.35
4525 6014 2.154462 AGAAGTTCAATGCCGAACCAG 58.846 47.619 5.50 0.00 45.27 4.00
4527 6016 2.416893 GAGAGAAGTTCAATGCCGAACC 59.583 50.000 5.50 0.00 45.27 3.62
4532 6021 3.350833 ACCATGAGAGAAGTTCAATGCC 58.649 45.455 5.50 0.00 0.00 4.40
4535 6024 4.401022 TGCAACCATGAGAGAAGTTCAAT 58.599 39.130 5.50 0.00 0.00 2.57
4553 6042 1.063912 CGTGTCAGAAAACAGCTGCAA 59.936 47.619 15.27 0.00 33.45 4.08
4617 6107 3.322828 TGCCCGGTTATTCTATCAGTACC 59.677 47.826 0.00 0.00 0.00 3.34
4663 6170 5.518128 CCACTTGATCTGAATCTGAACTACG 59.482 44.000 0.00 0.00 32.75 3.51
4753 6277 2.586914 CGAGCGCCATCTGATGCA 60.587 61.111 12.17 0.00 0.00 3.96
4755 6279 1.485838 GACACGAGCGCCATCTGATG 61.486 60.000 10.71 10.71 0.00 3.07
4840 6364 1.004440 GAGTGTGTCAGTCAGGGGC 60.004 63.158 0.44 0.00 34.29 5.80
4875 6399 2.202756 GGAAGCAGCCGTACGGAG 60.203 66.667 37.62 27.44 37.50 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.