Multiple sequence alignment - TraesCS7D01G482500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G482500 chr7D 100.000 4234 0 0 1 4234 592861198 592856965 0.000000e+00 7819.0
1 TraesCS7D01G482500 chr7D 87.397 968 68 25 727 1673 592677129 592678063 0.000000e+00 1062.0
2 TraesCS7D01G482500 chr7D 83.810 735 82 12 975 1694 592632294 592633006 0.000000e+00 664.0
3 TraesCS7D01G482500 chr7D 83.000 700 63 38 987 1673 592816340 592816996 2.190000e-162 582.0
4 TraesCS7D01G482500 chr7D 87.324 426 38 10 359 782 592815829 592816240 1.380000e-129 473.0
5 TraesCS7D01G482500 chr7D 78.858 648 79 33 2532 3169 592678887 592679486 6.640000e-103 385.0
6 TraesCS7D01G482500 chr7D 78.247 639 87 29 2532 3169 592818763 592819350 3.110000e-96 363.0
7 TraesCS7D01G482500 chr7D 85.437 309 29 10 388 681 592675530 592675837 1.480000e-79 307.0
8 TraesCS7D01G482500 chr7D 96.117 103 4 0 3584 3686 489010786 489010684 7.280000e-38 169.0
9 TraesCS7D01G482500 chr7B 92.390 1117 39 16 814 1900 668907049 668908149 0.000000e+00 1550.0
10 TraesCS7D01G482500 chr7B 89.518 1078 56 14 2539 3580 668913976 668915032 0.000000e+00 1312.0
11 TraesCS7D01G482500 chr7B 86.373 998 79 26 739 1709 669141696 669140729 0.000000e+00 1037.0
12 TraesCS7D01G482500 chr7B 90.946 740 56 7 1 733 668906290 668907025 0.000000e+00 985.0
13 TraesCS7D01G482500 chr7B 83.970 942 58 34 814 1719 668930814 668929930 0.000000e+00 817.0
14 TraesCS7D01G482500 chr7B 92.732 399 20 6 3680 4078 668915037 668915426 6.140000e-158 568.0
15 TraesCS7D01G482500 chr7B 86.494 385 33 13 390 770 668931163 668930794 5.100000e-109 405.0
16 TraesCS7D01G482500 chr7B 85.194 412 35 13 1917 2313 668908200 668908600 2.370000e-107 399.0
17 TraesCS7D01G482500 chr7B 77.454 652 85 34 2532 3169 669140062 669139459 2.440000e-87 333.0
18 TraesCS7D01G482500 chr7B 77.054 645 84 38 2532 3169 668929344 668928757 3.180000e-81 313.0
19 TraesCS7D01G482500 chr7B 84.556 259 29 8 434 681 669175049 669174791 3.270000e-61 246.0
20 TraesCS7D01G482500 chr7B 93.377 151 4 5 4084 4234 668915461 668915605 7.130000e-53 219.0
21 TraesCS7D01G482500 chr7B 83.193 119 8 8 3586 3704 281209087 281208981 9.690000e-17 99.0
22 TraesCS7D01G482500 chr7A 88.010 1226 76 34 2406 3587 685228965 685227767 0.000000e+00 1384.0
23 TraesCS7D01G482500 chr7A 85.914 1356 82 51 388 1673 685231310 685229994 0.000000e+00 1345.0
24 TraesCS7D01G482500 chr7A 86.393 926 57 25 818 1717 685212497 685213379 0.000000e+00 948.0
25 TraesCS7D01G482500 chr7A 84.582 921 59 36 808 1699 685089968 685090834 0.000000e+00 837.0
26 TraesCS7D01G482500 chr7A 85.369 704 52 27 1720 2392 685229634 685228951 0.000000e+00 682.0
27 TraesCS7D01G482500 chr7A 80.711 928 114 28 812 1718 684292378 684293261 0.000000e+00 662.0
28 TraesCS7D01G482500 chr7A 80.000 715 95 33 2532 3235 685214037 685214714 6.360000e-133 484.0
29 TraesCS7D01G482500 chr7A 85.405 370 43 8 372 738 685212155 685212516 1.440000e-99 374.0
30 TraesCS7D01G482500 chr7A 80.500 400 55 15 2840 3235 685095458 685095838 6.930000e-73 285.0
31 TraesCS7D01G482500 chr7A 84.351 262 23 11 3800 4056 685227660 685227412 1.520000e-59 241.0
32 TraesCS7D01G482500 chr7A 90.441 136 13 0 2532 2667 685095210 685095345 3.360000e-41 180.0
33 TraesCS7D01G482500 chr7A 94.872 78 3 1 649 725 685089912 685089989 2.070000e-23 121.0
34 TraesCS7D01G482500 chr2B 87.753 939 35 24 2709 3586 227683555 227682636 0.000000e+00 1024.0
35 TraesCS7D01G482500 chr2B 87.544 562 20 12 3714 4234 227682576 227682024 4.680000e-169 604.0
36 TraesCS7D01G482500 chr2B 97.959 98 2 0 3587 3684 46883100 46883003 2.020000e-38 171.0
37 TraesCS7D01G482500 chr2B 88.732 71 1 1 3682 3752 227682638 227682575 3.510000e-11 80.5
38 TraesCS7D01G482500 chr2A 87.514 873 27 33 2709 3525 737478901 737478055 0.000000e+00 933.0
39 TraesCS7D01G482500 chr2A 89.205 352 14 12 3682 4025 737477834 737477499 6.550000e-113 418.0
40 TraesCS7D01G482500 chr2A 92.174 115 8 1 3584 3698 603084741 603084628 1.220000e-35 161.0
41 TraesCS7D01G482500 chr6B 88.366 765 27 12 2871 3586 265822700 265821949 0.000000e+00 863.0
42 TraesCS7D01G482500 chr6B 86.027 594 26 17 3682 4234 265821951 265821374 6.100000e-163 584.0
43 TraesCS7D01G482500 chr6B 95.161 62 1 1 2709 2768 265822760 265822699 3.480000e-16 97.1
44 TraesCS7D01G482500 chr1A 90.141 426 19 9 2709 3126 544193981 544193571 2.240000e-147 532.0
45 TraesCS7D01G482500 chr1A 92.486 173 2 5 3916 4087 544193551 544193389 1.970000e-58 237.0
46 TraesCS7D01G482500 chr1A 91.018 167 6 3 4072 4234 544193366 544193205 2.560000e-52 217.0
47 TraesCS7D01G482500 chr6A 95.575 113 3 2 3582 3693 587750759 587750648 3.360000e-41 180.0
48 TraesCS7D01G482500 chr3D 97.030 101 3 0 3587 3687 603946161 603946261 2.020000e-38 171.0
49 TraesCS7D01G482500 chr5D 96.117 103 4 0 3581 3683 253168246 253168144 7.280000e-38 169.0
50 TraesCS7D01G482500 chr3A 95.283 106 5 0 3583 3688 64059417 64059312 7.280000e-38 169.0
51 TraesCS7D01G482500 chr3A 82.500 120 5 7 3585 3704 556300130 556300027 1.620000e-14 91.6
52 TraesCS7D01G482500 chr5A 93.805 113 3 4 3576 3688 686412800 686412908 2.620000e-37 167.0
53 TraesCS7D01G482500 chrUn 92.857 112 8 0 3575 3686 305213120 305213231 3.390000e-36 163.0
54 TraesCS7D01G482500 chr1B 81.022 137 8 7 3576 3711 332837986 332837867 4.510000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G482500 chr7D 592856965 592861198 4233 True 7819.000000 7819 100.000000 1 4234 1 chr7D.!!$R2 4233
1 TraesCS7D01G482500 chr7D 592632294 592633006 712 False 664.000000 664 83.810000 975 1694 1 chr7D.!!$F1 719
2 TraesCS7D01G482500 chr7D 592675530 592679486 3956 False 584.666667 1062 83.897333 388 3169 3 chr7D.!!$F2 2781
3 TraesCS7D01G482500 chr7D 592815829 592819350 3521 False 472.666667 582 82.857000 359 3169 3 chr7D.!!$F3 2810
4 TraesCS7D01G482500 chr7B 668906290 668908600 2310 False 978.000000 1550 89.510000 1 2313 3 chr7B.!!$F1 2312
5 TraesCS7D01G482500 chr7B 668913976 668915605 1629 False 699.666667 1312 91.875667 2539 4234 3 chr7B.!!$F2 1695
6 TraesCS7D01G482500 chr7B 669139459 669141696 2237 True 685.000000 1037 81.913500 739 3169 2 chr7B.!!$R4 2430
7 TraesCS7D01G482500 chr7B 668928757 668931163 2406 True 511.666667 817 82.506000 390 3169 3 chr7B.!!$R3 2779
8 TraesCS7D01G482500 chr7A 685227412 685231310 3898 True 913.000000 1384 85.911000 388 4056 4 chr7A.!!$R1 3668
9 TraesCS7D01G482500 chr7A 684292378 684293261 883 False 662.000000 662 80.711000 812 1718 1 chr7A.!!$F1 906
10 TraesCS7D01G482500 chr7A 685212155 685214714 2559 False 602.000000 948 83.932667 372 3235 3 chr7A.!!$F4 2863
11 TraesCS7D01G482500 chr7A 685089912 685090834 922 False 479.000000 837 89.727000 649 1699 2 chr7A.!!$F2 1050
12 TraesCS7D01G482500 chr7A 685095210 685095838 628 False 232.500000 285 85.470500 2532 3235 2 chr7A.!!$F3 703
13 TraesCS7D01G482500 chr2B 227682024 227683555 1531 True 569.500000 1024 88.009667 2709 4234 3 chr2B.!!$R2 1525
14 TraesCS7D01G482500 chr2A 737477499 737478901 1402 True 675.500000 933 88.359500 2709 4025 2 chr2A.!!$R2 1316
15 TraesCS7D01G482500 chr6B 265821374 265822760 1386 True 514.700000 863 89.851333 2709 4234 3 chr6B.!!$R1 1525
16 TraesCS7D01G482500 chr1A 544193205 544193981 776 True 328.666667 532 91.215000 2709 4234 3 chr1A.!!$R1 1525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 2378 0.031585 GAGCGACCACACACACACTA 59.968 55.0 0.00 0.00 0.0 2.74 F
1809 3555 0.618968 AGGTTGCAGCTAGGCTAGGT 60.619 55.0 20.03 20.03 36.4 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 3664 0.244994 ATGACTGGTCGTCTCAGTGC 59.755 55.0 11.38 5.82 44.51 4.40 R
3792 7250 0.110486 GTTTGGGACCTCTCTTGGCA 59.890 55.0 0.00 0.00 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.060065 TAGGGTAGGCGGTGCAAT 57.940 55.556 0.00 0.00 0.00 3.56
34 35 1.894466 CAATGGGTTGAATGTGGAGCA 59.106 47.619 0.00 0.00 37.53 4.26
36 37 0.478072 TGGGTTGAATGTGGAGCACT 59.522 50.000 0.00 0.00 35.11 4.40
50 51 2.485814 GGAGCACTGGAGTAAGCTTTTG 59.514 50.000 3.20 0.00 37.48 2.44
58 59 2.290323 GGAGTAAGCTTTTGAGGCTCCA 60.290 50.000 12.86 0.00 40.34 3.86
59 60 3.615155 GAGTAAGCTTTTGAGGCTCCAT 58.385 45.455 12.86 0.00 39.30 3.41
60 61 3.615155 AGTAAGCTTTTGAGGCTCCATC 58.385 45.455 12.86 0.00 39.30 3.51
61 62 1.844687 AAGCTTTTGAGGCTCCATCC 58.155 50.000 12.86 0.00 39.30 3.51
67 68 0.842030 TTGAGGCTCCATCCTGGTGT 60.842 55.000 12.86 0.00 39.03 4.16
92 93 0.884704 CCATTTAGGCGGACGGATGG 60.885 60.000 0.00 0.00 0.00 3.51
108 109 2.487805 GGATGGTCAGCTGGCATGAATA 60.488 50.000 21.89 0.00 0.00 1.75
143 144 0.678950 TGACGTCCACTCTGAATGCA 59.321 50.000 14.12 0.00 0.00 3.96
151 152 2.562635 CACTCTGAATGCATGGAGGAG 58.437 52.381 20.90 17.46 0.00 3.69
152 153 2.169978 CACTCTGAATGCATGGAGGAGA 59.830 50.000 20.90 9.87 0.00 3.71
158 159 2.006805 ATGCATGGAGGAGATCTCGA 57.993 50.000 16.46 1.03 43.34 4.04
162 163 0.187117 ATGGAGGAGATCTCGAGGCA 59.813 55.000 16.46 0.00 43.34 4.75
163 164 0.187117 TGGAGGAGATCTCGAGGCAT 59.813 55.000 16.46 0.00 43.34 4.40
169 170 1.959985 GAGATCTCGAGGCATGGAGAA 59.040 52.381 16.98 1.44 42.66 2.87
171 172 1.000731 GATCTCGAGGCATGGAGAAGG 59.999 57.143 16.98 0.00 42.66 3.46
172 173 1.045350 TCTCGAGGCATGGAGAAGGG 61.045 60.000 10.81 0.00 37.35 3.95
192 193 2.232622 TTTTTCGGTGGGTCCAGGA 58.767 52.632 0.00 0.00 35.57 3.86
252 253 1.697982 ACCTACCCTCAGTTTGGTGTC 59.302 52.381 0.00 0.00 36.04 3.67
269 270 2.032377 GTGTCGGTTTGCGAGAATTCAA 60.032 45.455 8.44 0.00 0.00 2.69
271 272 3.252215 TGTCGGTTTGCGAGAATTCAAAT 59.748 39.130 8.44 0.00 35.06 2.32
272 273 3.603770 GTCGGTTTGCGAGAATTCAAATG 59.396 43.478 8.44 0.00 35.06 2.32
278 279 2.749076 TGCGAGAATTCAAATGTCTGGG 59.251 45.455 8.44 0.00 0.00 4.45
300 301 4.412207 GTCGGTCTGGACAAATTTAATGC 58.588 43.478 3.10 0.00 36.91 3.56
312 313 1.249407 TTTAATGCCCGTGGTTGGAC 58.751 50.000 0.00 0.00 0.00 4.02
314 315 1.828461 TAATGCCCGTGGTTGGACGA 61.828 55.000 0.00 0.00 42.10 4.20
315 316 2.478335 AATGCCCGTGGTTGGACGAT 62.478 55.000 0.00 0.00 42.10 3.73
316 317 2.359478 GCCCGTGGTTGGACGATT 60.359 61.111 0.00 0.00 42.10 3.34
317 318 1.078988 GCCCGTGGTTGGACGATTA 60.079 57.895 0.00 0.00 42.10 1.75
321 322 2.750712 CCCGTGGTTGGACGATTAAAAT 59.249 45.455 0.00 0.00 42.10 1.82
323 324 4.577283 CCCGTGGTTGGACGATTAAAATAT 59.423 41.667 0.00 0.00 42.10 1.28
324 325 5.277634 CCCGTGGTTGGACGATTAAAATATC 60.278 44.000 0.00 0.00 42.10 1.63
325 326 5.277634 CCGTGGTTGGACGATTAAAATATCC 60.278 44.000 0.00 0.00 42.10 2.59
384 388 2.593148 ATCCGCGTTGTGGTTGCA 60.593 55.556 4.92 0.00 34.40 4.08
427 431 0.609131 CACATCCGGCCCAAAGAAGT 60.609 55.000 0.00 0.00 0.00 3.01
488 492 5.679734 TTTTGCAAGCACAAGAAAAACAA 57.320 30.435 0.00 0.00 0.00 2.83
629 664 2.892425 CGGCCATCTTCGTCCAGC 60.892 66.667 2.24 0.00 0.00 4.85
690 2000 1.468054 GCGCCAAGAGTTATTGCCAAG 60.468 52.381 0.00 0.00 0.00 3.61
712 2022 0.880278 ACACGCACACACTCATCACC 60.880 55.000 0.00 0.00 0.00 4.02
729 2039 2.780693 CCTCCTCCCTCCTCCACA 59.219 66.667 0.00 0.00 0.00 4.17
739 2049 1.620798 CCTCCTCCACACTCTCCATCA 60.621 57.143 0.00 0.00 0.00 3.07
807 2119 1.006832 CAGTACACTACCCGCATTGC 58.993 55.000 0.00 0.00 0.00 3.56
808 2120 0.902531 AGTACACTACCCGCATTGCT 59.097 50.000 7.12 0.00 0.00 3.91
937 2312 4.263572 CCAACCACACGCCTCCCA 62.264 66.667 0.00 0.00 0.00 4.37
939 2314 4.643387 AACCACACGCCTCCCAGC 62.643 66.667 0.00 0.00 0.00 4.85
977 2361 2.159254 CCTTCTCTTCTTGAGCTCCGAG 60.159 54.545 12.15 9.52 42.38 4.63
989 2373 3.207547 CTCCGAGCGACCACACACA 62.208 63.158 0.00 0.00 0.00 3.72
994 2378 0.031585 GAGCGACCACACACACACTA 59.968 55.000 0.00 0.00 0.00 2.74
1769 3515 1.074405 TGATGTTCTTGCAGAAGCCCT 59.926 47.619 0.00 0.00 41.13 5.19
1775 3521 1.065199 TCTTGCAGAAGCCCTGTATGG 60.065 52.381 5.72 0.00 44.71 2.74
1809 3555 0.618968 AGGTTGCAGCTAGGCTAGGT 60.619 55.000 20.03 20.03 36.40 3.08
1900 3649 1.138247 GCAGCCATGGAAAAGCTCG 59.862 57.895 18.40 1.40 33.70 5.03
1903 3652 3.068729 GCCATGGAAAAGCTCGGCC 62.069 63.158 18.40 0.00 33.31 6.13
1909 3658 4.329545 AAAAGCTCGGCCCGCTCA 62.330 61.111 14.00 0.00 36.56 4.26
1969 3752 5.841957 AATGACAAGAGAAAACACTGCTT 57.158 34.783 0.00 0.00 0.00 3.91
1983 3771 1.076559 TGCTTCATGGCATGGAGGG 60.077 57.895 31.69 13.44 36.35 4.30
1984 3772 1.228228 GCTTCATGGCATGGAGGGA 59.772 57.895 31.69 9.64 36.35 4.20
1985 3773 0.822532 GCTTCATGGCATGGAGGGAG 60.823 60.000 31.69 19.42 36.35 4.30
1986 3774 0.178998 CTTCATGGCATGGAGGGAGG 60.179 60.000 25.44 4.49 31.96 4.30
2056 3855 0.534427 GGTTTTCCGGGGATCGATCC 60.534 60.000 32.57 32.57 46.41 3.36
2085 5044 0.399075 GAAAGGGTCGTGGAAAGGGA 59.601 55.000 0.00 0.00 0.00 4.20
2099 5058 3.445450 GGAAAGGGAGAGAATCAAAAGGC 59.555 47.826 0.00 0.00 37.82 4.35
2229 5209 1.620819 CTGACCATATCTCTTCCCCGG 59.379 57.143 0.00 0.00 0.00 5.73
2231 5212 1.293498 CCATATCTCTTCCCCGGCG 59.707 63.158 0.00 0.00 0.00 6.46
2265 5246 2.493278 CCTCCCATTGACCAATGTTGTC 59.507 50.000 18.15 0.00 44.97 3.18
2339 5362 1.202615 ACCATCCATGCTCGTCATCTG 60.203 52.381 0.00 0.00 31.79 2.90
2346 5369 2.584492 TGCTCGTCATCTGGTGTATG 57.416 50.000 0.00 0.00 0.00 2.39
2347 5370 2.099405 TGCTCGTCATCTGGTGTATGA 58.901 47.619 0.00 0.00 0.00 2.15
2348 5371 2.099756 TGCTCGTCATCTGGTGTATGAG 59.900 50.000 5.67 5.67 34.12 2.90
2387 5414 5.535406 ACGGTAGATGCTATTTACTGCTAGT 59.465 40.000 0.00 0.00 0.00 2.57
2463 5490 3.160777 GCGAGGTTTGTTAGCTAGCTA 57.839 47.619 20.67 20.67 45.78 3.32
2488 5515 8.451908 AAAGATTGACTAGCAAGTTAGTTTGT 57.548 30.769 0.00 0.00 40.42 2.83
2530 5557 4.868450 TGAGTTAAGTTTGTTGGTCGTG 57.132 40.909 0.00 0.00 0.00 4.35
2681 5817 1.133167 CCTTCCAAGAAACCCAACCCT 60.133 52.381 0.00 0.00 0.00 4.34
2817 5958 3.181500 GCACGGCTAATTAGTTCCCTTTG 60.181 47.826 13.91 7.68 0.00 2.77
2819 5960 2.357952 CGGCTAATTAGTTCCCTTTGCC 59.642 50.000 13.91 5.56 37.41 4.52
2912 6054 2.675056 GCAGCACGACCAGAGCAAG 61.675 63.158 0.00 0.00 38.98 4.01
2913 6055 2.031516 CAGCACGACCAGAGCAAGG 61.032 63.158 0.00 0.00 38.98 3.61
2914 6056 3.426568 GCACGACCAGAGCAAGGC 61.427 66.667 0.00 0.00 36.42 4.35
2984 6132 1.668151 GAAGGACGACCACCAGCAC 60.668 63.158 6.71 0.00 38.94 4.40
3391 6630 3.370879 CTGAGATCAGCTAGCAAAGGCG 61.371 54.545 18.83 0.00 40.32 5.52
3448 6700 3.715628 TTCAACTTTCTTTCCTGCAGC 57.284 42.857 8.66 0.00 0.00 5.25
3488 6744 0.822164 AAGCATGCCTTTCTGCCATC 59.178 50.000 15.66 0.00 39.22 3.51
3519 6775 6.012658 TCAGTGAGGAAATAATGTTTGTGC 57.987 37.500 0.00 0.00 0.00 4.57
3587 7008 8.564574 CCTTGCATTTAAGTTTCTGTGTTACTA 58.435 33.333 0.00 0.00 0.00 1.82
3588 7009 9.382244 CTTGCATTTAAGTTTCTGTGTTACTAC 57.618 33.333 0.00 0.00 0.00 2.73
3589 7010 8.671384 TGCATTTAAGTTTCTGTGTTACTACT 57.329 30.769 0.00 0.00 0.00 2.57
3590 7011 8.770828 TGCATTTAAGTTTCTGTGTTACTACTC 58.229 33.333 0.00 0.00 0.00 2.59
3591 7012 8.228464 GCATTTAAGTTTCTGTGTTACTACTCC 58.772 37.037 0.00 0.00 0.00 3.85
3592 7013 8.718734 CATTTAAGTTTCTGTGTTACTACTCCC 58.281 37.037 0.00 0.00 0.00 4.30
3593 7014 7.607615 TTAAGTTTCTGTGTTACTACTCCCT 57.392 36.000 0.00 0.00 0.00 4.20
3594 7015 5.725325 AGTTTCTGTGTTACTACTCCCTC 57.275 43.478 0.00 0.00 0.00 4.30
3595 7016 4.527427 AGTTTCTGTGTTACTACTCCCTCC 59.473 45.833 0.00 0.00 0.00 4.30
3596 7017 2.719739 TCTGTGTTACTACTCCCTCCG 58.280 52.381 0.00 0.00 0.00 4.63
3597 7018 2.040813 TCTGTGTTACTACTCCCTCCGT 59.959 50.000 0.00 0.00 0.00 4.69
3598 7019 2.824341 CTGTGTTACTACTCCCTCCGTT 59.176 50.000 0.00 0.00 0.00 4.44
3599 7020 2.821969 TGTGTTACTACTCCCTCCGTTC 59.178 50.000 0.00 0.00 0.00 3.95
3600 7021 2.165234 GTGTTACTACTCCCTCCGTTCC 59.835 54.545 0.00 0.00 0.00 3.62
3601 7022 2.225091 TGTTACTACTCCCTCCGTTCCA 60.225 50.000 0.00 0.00 0.00 3.53
3602 7023 2.827921 GTTACTACTCCCTCCGTTCCAA 59.172 50.000 0.00 0.00 0.00 3.53
3603 7024 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3604 7025 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
3605 7026 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3606 7027 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3607 7028 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3608 7029 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3609 7030 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3610 7031 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3611 7032 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3612 7033 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3613 7034 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3614 7035 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3615 7036 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3616 7037 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3617 7038 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3618 7039 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3619 7040 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3620 7041 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3621 7042 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
3658 7079 9.716531 AGTATAAAGTTAGTACAAAGTTGGGTC 57.283 33.333 0.00 0.00 0.00 4.46
3659 7080 9.492973 GTATAAAGTTAGTACAAAGTTGGGTCA 57.507 33.333 0.00 0.00 0.00 4.02
3661 7082 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
3662 7083 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
3663 7084 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
3664 7085 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
3665 7086 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
3666 7087 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
3667 7088 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
3668 7089 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
3669 7090 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
3670 7091 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
3671 7092 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
3672 7093 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
3673 7094 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
3674 7095 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
3675 7096 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
3676 7097 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
3677 7098 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
3678 7099 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3792 7250 1.067916 CTGCGTGCCCAAAGCTTTT 59.932 52.632 9.53 0.00 44.23 2.27
3862 7320 2.029110 GCCATTGCCTAAGCTTTCAACA 60.029 45.455 3.20 0.00 40.80 3.33
3877 7335 5.624344 TTTCAACACTGACCGTTTTTACA 57.376 34.783 0.00 0.00 0.00 2.41
3882 7340 2.032030 CACTGACCGTTTTTACAGGCAG 60.032 50.000 0.00 0.00 36.21 4.85
3908 7371 1.927210 CGACGCATGCATGGAGTAC 59.073 57.895 27.34 9.80 0.00 2.73
3944 7410 0.538118 GGTTGGACCATGCATGCAAT 59.462 50.000 26.68 13.54 38.42 3.56
4078 7548 2.290464 CTGGCTAGACTGCGTAGTACT 58.710 52.381 6.01 8.34 37.25 2.73
4079 7549 2.014857 TGGCTAGACTGCGTAGTACTG 58.985 52.381 6.01 0.54 37.25 2.74
4080 7550 1.268640 GGCTAGACTGCGTAGTACTGC 60.269 57.143 6.01 10.54 37.25 4.40
4081 7551 1.400846 GCTAGACTGCGTAGTACTGCA 59.599 52.381 6.01 15.60 37.25 4.41
4127 7632 6.816640 TGGAGTTCATCGACATTAACTAAAGG 59.183 38.462 0.00 0.00 32.51 3.11
4134 7643 4.873827 TCGACATTAACTAAAGGCATGGAC 59.126 41.667 0.00 0.00 0.00 4.02
4150 7659 3.160557 GACGGATCTGCGTGCATGC 62.161 63.158 24.20 24.20 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.478072 AGTGCTCCACATTCAACCCA 59.522 50.000 0.00 0.00 36.74 4.51
34 35 2.373502 AGCCTCAAAAGCTTACTCCAGT 59.626 45.455 0.00 0.00 37.24 4.00
36 37 2.290323 GGAGCCTCAAAAGCTTACTCCA 60.290 50.000 17.04 0.00 41.75 3.86
58 59 2.537633 AATGGCATTCACACCAGGAT 57.462 45.000 6.96 0.00 39.88 3.24
59 60 2.307496 AAATGGCATTCACACCAGGA 57.693 45.000 14.04 0.00 39.88 3.86
60 61 2.428171 CCTAAATGGCATTCACACCAGG 59.572 50.000 14.04 9.31 39.88 4.45
61 62 3.788333 CCTAAATGGCATTCACACCAG 57.212 47.619 14.04 4.43 39.88 4.00
88 89 1.688772 ATTCATGCCAGCTGACCATC 58.311 50.000 17.39 0.00 0.00 3.51
90 91 1.561076 AGTATTCATGCCAGCTGACCA 59.439 47.619 17.39 12.44 0.00 4.02
92 93 1.945394 CCAGTATTCATGCCAGCTGAC 59.055 52.381 17.39 3.38 0.00 3.51
125 126 1.662629 CATGCATTCAGAGTGGACGTC 59.337 52.381 7.13 7.13 0.00 4.34
143 144 0.187117 TGCCTCGAGATCTCCTCCAT 59.813 55.000 15.71 0.00 38.71 3.41
151 152 1.000731 CCTTCTCCATGCCTCGAGATC 59.999 57.143 15.71 5.83 35.14 2.75
152 153 1.047002 CCTTCTCCATGCCTCGAGAT 58.953 55.000 15.71 0.00 35.14 2.75
158 159 2.702270 AAAAACCCTTCTCCATGCCT 57.298 45.000 0.00 0.00 0.00 4.75
181 182 0.404040 TTCCAACATCCTGGACCCAC 59.596 55.000 0.00 0.00 45.37 4.61
217 218 0.178897 TAGGTTTGGGGGAGTCCGAA 60.179 55.000 2.26 0.00 36.01 4.30
218 219 0.906282 GTAGGTTTGGGGGAGTCCGA 60.906 60.000 2.26 0.00 36.01 4.55
219 220 1.600638 GTAGGTTTGGGGGAGTCCG 59.399 63.158 2.26 0.00 36.01 4.79
221 222 0.549413 AGGGTAGGTTTGGGGGAGTC 60.549 60.000 0.00 0.00 0.00 3.36
248 249 1.529438 TGAATTCTCGCAAACCGACAC 59.471 47.619 7.05 0.00 41.89 3.67
252 253 3.564511 ACATTTGAATTCTCGCAAACCG 58.435 40.909 7.05 0.00 36.89 4.44
269 270 0.544357 TCCAGACCGACCCAGACATT 60.544 55.000 0.00 0.00 0.00 2.71
271 272 1.906824 GTCCAGACCGACCCAGACA 60.907 63.158 0.00 0.00 0.00 3.41
272 273 1.469335 TTGTCCAGACCGACCCAGAC 61.469 60.000 0.00 0.00 31.35 3.51
278 279 4.412207 GCATTAAATTTGTCCAGACCGAC 58.588 43.478 0.00 0.00 0.00 4.79
300 301 1.810959 TTTAATCGTCCAACCACGGG 58.189 50.000 0.00 0.00 40.35 5.28
312 313 3.676646 GGACGGTCCGGATATTTTAATCG 59.323 47.826 17.28 0.00 0.00 3.34
335 339 1.466950 TCGCAAAATGTTCATCGGACC 59.533 47.619 0.00 0.00 0.00 4.46
340 344 5.052172 CCAAATCGATCGCAAAATGTTCATC 60.052 40.000 11.09 0.00 0.00 2.92
384 388 2.616842 CGCAACCTTTTGTGTTCCTAGT 59.383 45.455 0.00 0.00 38.26 2.57
427 431 5.097529 GGTTCGAATATGTACTCACGTGAA 58.902 41.667 20.49 4.74 0.00 3.18
488 492 9.914834 TGGGCTATGTACTTATTTTCTTATTGT 57.085 29.630 0.00 0.00 0.00 2.71
629 664 1.878522 GTATGTGTCAGCGGCCTCG 60.879 63.158 0.00 0.00 39.81 4.63
690 2000 1.291877 GATGAGTGTGTGCGTGTCCC 61.292 60.000 0.00 0.00 0.00 4.46
712 2022 1.687493 GTGTGGAGGAGGGAGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
729 2039 3.782523 AGAGAGAGAGAGTGATGGAGAGT 59.217 47.826 0.00 0.00 0.00 3.24
739 2049 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
807 2119 6.590068 AGAGAGAAGAGATTGAGAGAGAGAG 58.410 44.000 0.00 0.00 0.00 3.20
808 2120 6.408548 GGAGAGAGAAGAGATTGAGAGAGAGA 60.409 46.154 0.00 0.00 0.00 3.10
977 2361 0.944311 CCTAGTGTGTGTGTGGTCGC 60.944 60.000 0.00 0.00 0.00 5.19
985 2369 1.065199 CATCATGGCCCTAGTGTGTGT 60.065 52.381 0.00 0.00 0.00 3.72
989 2373 0.471617 GCTCATCATGGCCCTAGTGT 59.528 55.000 0.00 0.00 0.00 3.55
994 2378 4.575973 GCCGCTCATCATGGCCCT 62.576 66.667 0.00 0.00 43.06 5.19
1140 2536 4.552365 ATCATCGCGCCCTGGTGG 62.552 66.667 0.00 0.00 37.09 4.61
1141 2537 2.642996 TACATCATCGCGCCCTGGTG 62.643 60.000 13.85 13.85 0.00 4.17
1695 3121 2.774234 AGAGAGAGAGAGAGAGGGAGTG 59.226 54.545 0.00 0.00 0.00 3.51
1696 3122 3.136641 AGAGAGAGAGAGAGAGGGAGT 57.863 52.381 0.00 0.00 0.00 3.85
1740 3482 3.286353 TGCAAGAACATCACCTCACAAA 58.714 40.909 0.00 0.00 0.00 2.83
1809 3555 1.538876 AGCTTCCACTGGCCCTACA 60.539 57.895 0.00 0.00 0.00 2.74
1892 3641 4.329545 TGAGCGGGCCGAGCTTTT 62.330 61.111 33.44 6.66 46.13 2.27
1909 3658 3.354645 TCGTCTCAGTGCGCGACT 61.355 61.111 12.10 7.97 34.02 4.18
1911 3660 4.400109 GGTCGTCTCAGTGCGCGA 62.400 66.667 12.10 0.00 0.00 5.87
1912 3661 4.700365 TGGTCGTCTCAGTGCGCG 62.700 66.667 0.00 0.00 0.00 6.86
1915 3664 0.244994 ATGACTGGTCGTCTCAGTGC 59.755 55.000 11.38 5.82 44.51 4.40
1969 3752 1.004626 TCCTCCCTCCATGCCATGA 59.995 57.895 6.18 0.00 0.00 3.07
1983 3771 3.556999 TGAGCATGACCTAGTACTCCTC 58.443 50.000 0.00 0.00 0.00 3.71
1984 3772 3.671740 TGAGCATGACCTAGTACTCCT 57.328 47.619 0.00 0.00 0.00 3.69
1985 3773 3.553922 GCATGAGCATGACCTAGTACTCC 60.554 52.174 14.27 0.00 41.20 3.85
1986 3774 3.320541 AGCATGAGCATGACCTAGTACTC 59.679 47.826 14.27 0.00 45.49 2.59
2056 3855 1.452108 GACCCTTTCTCCGCCCATG 60.452 63.158 0.00 0.00 0.00 3.66
2085 5044 1.065126 CCCTCCGCCTTTTGATTCTCT 60.065 52.381 0.00 0.00 0.00 3.10
2099 5058 3.127533 CGCAGCCTTTTCCCTCCG 61.128 66.667 0.00 0.00 0.00 4.63
2142 5105 1.519719 CCCCTAGTCTGCACTCTGC 59.480 63.158 0.00 0.00 45.29 4.26
2194 5174 4.060038 CAGGGCAAAAGCCTGGCG 62.060 66.667 13.96 0.00 42.62 5.69
2229 5209 2.093128 TGGGAGGATAAAGAGGAAACGC 60.093 50.000 0.00 0.00 0.00 4.84
2231 5212 5.590663 GTCAATGGGAGGATAAAGAGGAAAC 59.409 44.000 0.00 0.00 0.00 2.78
2282 5265 1.398390 GGCATGCAAAAGTCTAGTCGG 59.602 52.381 21.36 0.00 0.00 4.79
2339 5362 6.449635 TCAACCAAATAATGCTCATACACC 57.550 37.500 0.00 0.00 0.00 4.16
2346 5369 4.434713 ACCGTTCAACCAAATAATGCTC 57.565 40.909 0.00 0.00 0.00 4.26
2347 5370 5.250200 TCTACCGTTCAACCAAATAATGCT 58.750 37.500 0.00 0.00 0.00 3.79
2348 5371 5.554822 TCTACCGTTCAACCAAATAATGC 57.445 39.130 0.00 0.00 0.00 3.56
2463 5490 8.451908 ACAAACTAACTTGCTAGTCAATCTTT 57.548 30.769 0.07 0.00 33.57 2.52
2530 5557 0.669625 GGTGAGCACGTGGAACCTAC 60.670 60.000 18.88 0.00 0.00 3.18
2636 5772 2.504244 GAGTCCTTGGACGTCGCG 60.504 66.667 9.92 0.00 0.00 5.87
2681 5817 4.212913 GAGCTCGAGATGGCGCCA 62.213 66.667 34.80 34.80 0.00 5.69
2817 5958 1.939785 CTGCTCGATCGTACGTGGC 60.940 63.158 15.94 13.06 35.40 5.01
2819 5960 2.106750 AATCTGCTCGATCGTACGTG 57.893 50.000 15.94 6.86 34.70 4.49
2960 6105 2.116772 TGGTCGTCCTTCTCCCGT 59.883 61.111 0.00 0.00 34.23 5.28
2984 6132 3.047718 CTGCATGGCGTTGCTGAGG 62.048 63.158 12.59 0.00 42.27 3.86
3391 6630 0.242017 CTTTAGCCAAGCACTGCACC 59.758 55.000 3.30 0.00 0.00 5.01
3416 6668 8.090831 GGAAAGAAAGTTGAAAGAAAGGCATAT 58.909 33.333 0.00 0.00 0.00 1.78
3448 6700 3.356639 TTGCGGCACTAGAGGAGCG 62.357 63.158 0.05 0.00 0.00 5.03
3488 6744 8.103948 ACATTATTTCCTCACTGAAACAGAAG 57.896 34.615 5.76 3.13 37.08 2.85
3533 6951 4.823989 AGTGAAAAGATCAAGAACAGGGTG 59.176 41.667 0.00 0.00 40.50 4.61
3587 7008 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3588 7009 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3589 7010 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3590 7011 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3591 7012 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3592 7013 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3593 7014 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3594 7015 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3595 7016 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3632 7053 9.716531 GACCCAACTTTGTACTAACTTTATACT 57.283 33.333 0.00 0.00 0.00 2.12
3633 7054 9.492973 TGACCCAACTTTGTACTAACTTTATAC 57.507 33.333 0.00 0.00 0.00 1.47
3635 7056 9.227777 GATGACCCAACTTTGTACTAACTTTAT 57.772 33.333 0.00 0.00 0.00 1.40
3636 7057 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
3637 7058 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
3638 7059 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
3639 7060 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
3640 7061 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
3641 7062 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
3642 7063 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
3643 7064 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
3644 7065 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
3645 7066 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
3646 7067 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
3647 7068 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
3648 7069 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
3649 7070 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
3650 7071 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
3651 7072 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
3652 7073 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
3653 7074 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
3654 7075 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
3655 7076 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
3656 7077 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3657 7078 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3658 7079 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3659 7080 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3660 7081 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3661 7082 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3662 7083 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
3663 7084 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
3664 7085 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3665 7086 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3666 7087 1.829222 GATGTACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
3667 7088 1.006758 AGATGTACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
3668 7089 1.777941 AGATGTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
3669 7090 6.660094 AGATATAAGATGTACTCCCTCCGTTC 59.340 42.308 0.00 0.00 0.00 3.95
3670 7091 6.553857 AGATATAAGATGTACTCCCTCCGTT 58.446 40.000 0.00 0.00 0.00 4.44
3671 7092 6.142259 AGATATAAGATGTACTCCCTCCGT 57.858 41.667 0.00 0.00 0.00 4.69
3672 7093 6.887545 AGAAGATATAAGATGTACTCCCTCCG 59.112 42.308 0.00 0.00 0.00 4.63
3673 7094 9.181061 GTAGAAGATATAAGATGTACTCCCTCC 57.819 40.741 0.00 0.00 0.00 4.30
3674 7095 9.742144 TGTAGAAGATATAAGATGTACTCCCTC 57.258 37.037 0.00 0.00 0.00 4.30
3675 7096 9.747898 CTGTAGAAGATATAAGATGTACTCCCT 57.252 37.037 0.00 0.00 0.00 4.20
3676 7097 8.463607 GCTGTAGAAGATATAAGATGTACTCCC 58.536 40.741 0.00 0.00 0.00 4.30
3677 7098 9.238368 AGCTGTAGAAGATATAAGATGTACTCC 57.762 37.037 0.00 0.00 0.00 3.85
3792 7250 0.110486 GTTTGGGACCTCTCTTGGCA 59.890 55.000 0.00 0.00 0.00 4.92
3862 7320 2.218603 CTGCCTGTAAAAACGGTCAGT 58.781 47.619 0.00 0.00 0.00 3.41
3877 7335 3.425713 CGTCGCATTGCACTGCCT 61.426 61.111 21.76 0.00 39.00 4.75
3891 7354 0.461870 TGGTACTCCATGCATGCGTC 60.462 55.000 21.69 12.62 39.03 5.19
3908 7371 3.689649 CCAACCCTTCGAATTACTCTTGG 59.310 47.826 0.00 0.96 0.00 3.61
3911 7377 3.055312 GGTCCAACCCTTCGAATTACTCT 60.055 47.826 0.00 0.00 30.04 3.24
3944 7410 5.564651 GCAGTTAATACCAAGAGCAAAGCAA 60.565 40.000 0.00 0.00 0.00 3.91
4067 7537 3.084070 TGATGATGCAGTACTACGCAG 57.916 47.619 12.78 0.00 42.37 5.18
4127 7632 2.202932 ACGCAGATCCGTCCATGC 60.203 61.111 0.00 0.00 36.61 4.06
4134 7643 2.540228 ATGCATGCACGCAGATCCG 61.540 57.895 25.37 0.00 46.99 4.18
4150 7659 4.501714 GCCGTGCCCATGTGCATG 62.502 66.667 14.70 14.70 44.30 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.