Multiple sequence alignment - TraesCS7D01G481600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G481600 chr7D 100.000 3815 0 0 1 3815 591815531 591811717 0.000000e+00 7046.0
1 TraesCS7D01G481600 chr7D 95.423 284 12 1 296 578 40003896 40003613 5.810000e-123 451.0
2 TraesCS7D01G481600 chr7D 88.750 80 6 1 2965 3044 591817170 591817246 1.130000e-15 95.3
3 TraesCS7D01G481600 chr7B 92.534 2585 98 43 577 3129 671701626 671704147 0.000000e+00 3616.0
4 TraesCS7D01G481600 chr7B 91.648 1820 128 17 989 2802 685666711 685668512 0.000000e+00 2497.0
5 TraesCS7D01G481600 chr7B 84.854 548 55 22 3287 3809 671704726 671705270 9.390000e-146 527.0
6 TraesCS7D01G481600 chr7B 96.528 288 10 0 294 581 579784608 579784321 9.590000e-131 477.0
7 TraesCS7D01G481600 chr7B 94.539 293 12 1 293 581 630496939 630497231 2.090000e-122 449.0
8 TraesCS7D01G481600 chr7B 94.118 272 13 1 25 296 671701361 671701629 9.860000e-111 411.0
9 TraesCS7D01G481600 chr7A 94.914 2143 82 17 998 3133 682899211 682897089 0.000000e+00 3328.0
10 TraesCS7D01G481600 chr7A 89.931 2185 155 44 580 2730 727276203 727278356 0.000000e+00 2756.0
11 TraesCS7D01G481600 chr7A 92.480 1835 108 20 998 2818 726606054 726604236 0.000000e+00 2597.0
12 TraesCS7D01G481600 chr7A 92.444 622 37 7 2114 2730 727303658 727304274 0.000000e+00 880.0
13 TraesCS7D01G481600 chr7A 94.609 371 11 4 582 948 682899588 682899223 1.990000e-157 566.0
14 TraesCS7D01G481600 chr7A 94.444 270 15 0 25 294 682899864 682899595 2.120000e-112 416.0
15 TraesCS7D01G481600 chr7A 80.488 574 46 42 3293 3811 682896527 682895965 2.780000e-101 379.0
16 TraesCS7D01G481600 chr7A 78.974 195 25 11 111 294 727276009 727276198 6.690000e-23 119.0
17 TraesCS7D01G481600 chr7A 78.974 195 25 11 111 294 727301503 727301692 6.690000e-23 119.0
18 TraesCS7D01G481600 chr5B 85.356 717 98 5 1961 2675 622605452 622606163 0.000000e+00 736.0
19 TraesCS7D01G481600 chr5B 81.582 809 123 20 1045 1834 622604458 622605259 0.000000e+00 645.0
20 TraesCS7D01G481600 chr5B 97.241 290 8 0 291 580 153901369 153901658 3.420000e-135 492.0
21 TraesCS7D01G481600 chr5D 83.939 716 110 3 1961 2675 501096785 501097496 0.000000e+00 680.0
22 TraesCS7D01G481600 chr5D 94.444 288 16 0 291 578 322951346 322951633 9.720000e-121 444.0
23 TraesCS7D01G481600 chr3A 80.981 836 143 14 1006 1834 609688754 609687928 0.000000e+00 649.0
24 TraesCS7D01G481600 chr3B 80.406 837 146 16 1006 1834 620455929 620455103 4.190000e-174 621.0
25 TraesCS7D01G481600 chr3B 94.774 287 15 0 296 582 123940935 123940649 7.520000e-122 448.0
26 TraesCS7D01G481600 chr3D 81.583 733 122 11 1107 1834 466680004 466679280 9.120000e-166 593.0
27 TraesCS7D01G481600 chr3D 80.525 724 130 8 1958 2674 466679102 466678383 2.590000e-151 545.0
28 TraesCS7D01G481600 chr1B 96.071 280 11 0 296 575 549747713 549747992 1.250000e-124 457.0
29 TraesCS7D01G481600 chrUn 94.774 287 15 0 296 582 211090762 211091048 7.520000e-122 448.0
30 TraesCS7D01G481600 chr4B 95.357 280 13 0 296 575 90895572 90895851 2.700000e-121 446.0
31 TraesCS7D01G481600 chr6B 81.081 296 36 15 3510 3789 116105614 116105905 6.420000e-53 219.0
32 TraesCS7D01G481600 chr2D 88.136 59 2 4 31 89 515806204 515806151 8.850000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G481600 chr7D 591811717 591815531 3814 True 7046.00 7046 100.00000 1 3815 1 chr7D.!!$R2 3814
1 TraesCS7D01G481600 chr7B 685666711 685668512 1801 False 2497.00 2497 91.64800 989 2802 1 chr7B.!!$F2 1813
2 TraesCS7D01G481600 chr7B 671701361 671705270 3909 False 1518.00 3616 90.50200 25 3809 3 chr7B.!!$F3 3784
3 TraesCS7D01G481600 chr7A 726604236 726606054 1818 True 2597.00 2597 92.48000 998 2818 1 chr7A.!!$R1 1820
4 TraesCS7D01G481600 chr7A 727276009 727278356 2347 False 1437.50 2756 84.45250 111 2730 2 chr7A.!!$F1 2619
5 TraesCS7D01G481600 chr7A 682895965 682899864 3899 True 1172.25 3328 91.11375 25 3811 4 chr7A.!!$R2 3786
6 TraesCS7D01G481600 chr7A 727301503 727304274 2771 False 499.50 880 85.70900 111 2730 2 chr7A.!!$F2 2619
7 TraesCS7D01G481600 chr5B 622604458 622606163 1705 False 690.50 736 83.46900 1045 2675 2 chr5B.!!$F2 1630
8 TraesCS7D01G481600 chr5D 501096785 501097496 711 False 680.00 680 83.93900 1961 2675 1 chr5D.!!$F2 714
9 TraesCS7D01G481600 chr3A 609687928 609688754 826 True 649.00 649 80.98100 1006 1834 1 chr3A.!!$R1 828
10 TraesCS7D01G481600 chr3B 620455103 620455929 826 True 621.00 621 80.40600 1006 1834 1 chr3B.!!$R2 828
11 TraesCS7D01G481600 chr3D 466678383 466680004 1621 True 569.00 593 81.05400 1107 2674 2 chr3D.!!$R1 1567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 321 0.178990 GGTCAACTGAGGCCCTGTTT 60.179 55.0 0.0 0.0 35.17 2.83 F
310 326 0.178990 ACTGAGGCCCTGTTTGGTTC 60.179 55.0 0.0 0.0 0.00 3.62 F
311 327 0.178992 CTGAGGCCCTGTTTGGTTCA 60.179 55.0 0.0 0.0 0.00 3.18 F
1903 1969 0.456221 CGTCGAGGAACCAGTAGCAT 59.544 55.0 0.0 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 1969 0.671796 TCGTCCTCTTTCTTCGTGCA 59.328 50.000 0.00 0.00 0.00 4.57 R
2031 2255 1.281960 CACGGACACGACGAAGAGT 59.718 57.895 0.00 0.00 44.60 3.24 R
2107 2331 2.033448 CTTGTGCGGGTAGCCCAA 59.967 61.111 5.12 3.21 45.83 4.12 R
3436 4421 0.032130 CTACCCATACACGCGCATCT 59.968 55.000 5.73 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 7.151308 TGTTTTCTTCAAGTTTGTGAACATGT 58.849 30.769 0.00 0.00 38.26 3.21
68 69 8.300286 TGTTTTCTTCAAGTTTGTGAACATGTA 58.700 29.630 0.00 0.00 38.26 2.29
69 70 9.301153 GTTTTCTTCAAGTTTGTGAACATGTAT 57.699 29.630 0.00 0.00 38.26 2.29
72 73 9.944663 TTCTTCAAGTTTGTGAACATGTATTAC 57.055 29.630 0.00 0.00 38.26 1.89
103 107 9.330063 CTATTTTGGATCTGCTACAGTTAATCA 57.670 33.333 0.00 0.00 32.61 2.57
186 190 0.958091 TGGCCACCTTGAATTTGTCG 59.042 50.000 0.00 0.00 0.00 4.35
215 226 3.428862 GGCCCTTTCACATGGTTAATTCG 60.429 47.826 0.00 0.00 0.00 3.34
247 258 0.241213 GGGACGGAAGAAAAAGCTGC 59.759 55.000 0.00 0.00 0.00 5.25
296 312 5.343249 CCAAAGAGTTTTTGGTCAACTGAG 58.657 41.667 15.47 0.00 42.92 3.35
297 313 5.343249 CAAAGAGTTTTTGGTCAACTGAGG 58.657 41.667 0.00 0.00 34.49 3.86
298 314 2.952310 AGAGTTTTTGGTCAACTGAGGC 59.048 45.455 0.00 0.00 34.49 4.70
299 315 2.031870 AGTTTTTGGTCAACTGAGGCC 58.968 47.619 0.00 0.00 33.04 5.19
300 316 1.068588 GTTTTTGGTCAACTGAGGCCC 59.931 52.381 0.00 0.00 0.00 5.80
301 317 0.555769 TTTTGGTCAACTGAGGCCCT 59.444 50.000 0.00 0.00 0.00 5.19
302 318 0.178992 TTTGGTCAACTGAGGCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
303 319 1.352622 TTGGTCAACTGAGGCCCTGT 61.353 55.000 0.00 0.00 0.00 4.00
304 320 1.352622 TGGTCAACTGAGGCCCTGTT 61.353 55.000 0.00 4.85 37.40 3.16
305 321 0.178990 GGTCAACTGAGGCCCTGTTT 60.179 55.000 0.00 0.00 35.17 2.83
306 322 0.954452 GTCAACTGAGGCCCTGTTTG 59.046 55.000 0.00 0.00 35.17 2.93
307 323 0.178992 TCAACTGAGGCCCTGTTTGG 60.179 55.000 0.00 0.00 35.17 3.28
308 324 0.468029 CAACTGAGGCCCTGTTTGGT 60.468 55.000 0.00 0.00 35.17 3.67
309 325 0.261696 AACTGAGGCCCTGTTTGGTT 59.738 50.000 0.00 0.00 33.87 3.67
310 326 0.178990 ACTGAGGCCCTGTTTGGTTC 60.179 55.000 0.00 0.00 0.00 3.62
311 327 0.178992 CTGAGGCCCTGTTTGGTTCA 60.179 55.000 0.00 0.00 0.00 3.18
312 328 0.482446 TGAGGCCCTGTTTGGTTCAT 59.518 50.000 0.00 0.00 0.00 2.57
313 329 1.707989 TGAGGCCCTGTTTGGTTCATA 59.292 47.619 0.00 0.00 0.00 2.15
314 330 2.109128 TGAGGCCCTGTTTGGTTCATAA 59.891 45.455 0.00 0.00 0.00 1.90
315 331 2.755103 GAGGCCCTGTTTGGTTCATAAG 59.245 50.000 0.00 0.00 0.00 1.73
316 332 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
317 333 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
318 334 3.421844 GCCCTGTTTGGTTCATAAGTCT 58.578 45.455 0.00 0.00 0.00 3.24
319 335 3.826729 GCCCTGTTTGGTTCATAAGTCTT 59.173 43.478 0.00 0.00 0.00 3.01
320 336 5.007682 GCCCTGTTTGGTTCATAAGTCTTA 58.992 41.667 0.00 0.00 0.00 2.10
321 337 5.123979 GCCCTGTTTGGTTCATAAGTCTTAG 59.876 44.000 0.00 0.00 0.00 2.18
322 338 5.648092 CCCTGTTTGGTTCATAAGTCTTAGG 59.352 44.000 0.00 0.00 0.00 2.69
323 339 6.472887 CCTGTTTGGTTCATAAGTCTTAGGA 58.527 40.000 2.85 2.85 0.00 2.94
324 340 6.371825 CCTGTTTGGTTCATAAGTCTTAGGAC 59.628 42.308 6.47 0.00 42.41 3.85
352 368 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
353 369 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
354 370 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
355 371 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
356 372 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
357 373 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
358 374 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
359 375 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
360 376 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
361 377 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
362 378 7.366551 CCAACTTATAAGTCCCAAGTCCCTAAT 60.367 40.741 18.28 0.00 38.57 1.73
363 379 8.711170 CAACTTATAAGTCCCAAGTCCCTAATA 58.289 37.037 18.28 0.00 38.57 0.98
364 380 8.865244 ACTTATAAGTCCCAAGTCCCTAATAA 57.135 34.615 12.50 0.00 32.86 1.40
365 381 9.287818 ACTTATAAGTCCCAAGTCCCTAATAAA 57.712 33.333 12.50 0.00 32.86 1.40
368 384 5.648330 AGTCCCAAGTCCCTAATAAATCC 57.352 43.478 0.00 0.00 0.00 3.01
369 385 4.415846 AGTCCCAAGTCCCTAATAAATCCC 59.584 45.833 0.00 0.00 0.00 3.85
370 386 4.415846 GTCCCAAGTCCCTAATAAATCCCT 59.584 45.833 0.00 0.00 0.00 4.20
371 387 5.609708 GTCCCAAGTCCCTAATAAATCCCTA 59.390 44.000 0.00 0.00 0.00 3.53
372 388 5.609708 TCCCAAGTCCCTAATAAATCCCTAC 59.390 44.000 0.00 0.00 0.00 3.18
373 389 5.611408 CCCAAGTCCCTAATAAATCCCTACT 59.389 44.000 0.00 0.00 0.00 2.57
374 390 6.102762 CCCAAGTCCCTAATAAATCCCTACTT 59.897 42.308 0.00 0.00 0.00 2.24
375 391 6.998673 CCAAGTCCCTAATAAATCCCTACTTG 59.001 42.308 0.00 0.00 40.42 3.16
376 392 7.366551 CCAAGTCCCTAATAAATCCCTACTTGT 60.367 40.741 0.00 0.00 39.57 3.16
377 393 7.766736 AGTCCCTAATAAATCCCTACTTGTT 57.233 36.000 0.00 0.00 0.00 2.83
378 394 8.171337 AGTCCCTAATAAATCCCTACTTGTTT 57.829 34.615 0.00 0.00 0.00 2.83
379 395 8.053355 AGTCCCTAATAAATCCCTACTTGTTTG 58.947 37.037 0.00 0.00 0.00 2.93
380 396 7.284716 GTCCCTAATAAATCCCTACTTGTTTGG 59.715 40.741 0.00 0.00 0.00 3.28
381 397 7.036425 TCCCTAATAAATCCCTACTTGTTTGGT 60.036 37.037 0.00 0.00 0.00 3.67
382 398 7.618117 CCCTAATAAATCCCTACTTGTTTGGTT 59.382 37.037 0.00 0.00 0.00 3.67
383 399 8.683615 CCTAATAAATCCCTACTTGTTTGGTTC 58.316 37.037 0.00 0.00 0.00 3.62
384 400 7.476540 AATAAATCCCTACTTGTTTGGTTCC 57.523 36.000 0.00 0.00 0.00 3.62
385 401 4.741928 AATCCCTACTTGTTTGGTTCCT 57.258 40.909 0.00 0.00 0.00 3.36
386 402 3.502123 TCCCTACTTGTTTGGTTCCTG 57.498 47.619 0.00 0.00 0.00 3.86
387 403 2.107552 TCCCTACTTGTTTGGTTCCTGG 59.892 50.000 0.00 0.00 0.00 4.45
388 404 2.514803 CCTACTTGTTTGGTTCCTGGG 58.485 52.381 0.00 0.00 0.00 4.45
389 405 2.107552 CCTACTTGTTTGGTTCCTGGGA 59.892 50.000 0.00 0.00 0.00 4.37
390 406 2.067365 ACTTGTTTGGTTCCTGGGAC 57.933 50.000 0.00 0.00 0.00 4.46
391 407 1.569072 ACTTGTTTGGTTCCTGGGACT 59.431 47.619 4.84 0.00 0.00 3.85
392 408 2.024369 ACTTGTTTGGTTCCTGGGACTT 60.024 45.455 4.84 0.00 0.00 3.01
393 409 3.203487 ACTTGTTTGGTTCCTGGGACTTA 59.797 43.478 4.84 0.00 0.00 2.24
394 410 3.955524 TGTTTGGTTCCTGGGACTTAA 57.044 42.857 4.84 0.00 0.00 1.85
395 411 3.558033 TGTTTGGTTCCTGGGACTTAAC 58.442 45.455 4.84 9.92 0.00 2.01
396 412 3.053544 TGTTTGGTTCCTGGGACTTAACA 60.054 43.478 16.45 16.45 0.00 2.41
397 413 4.149598 GTTTGGTTCCTGGGACTTAACAT 58.850 43.478 4.84 0.00 0.00 2.71
398 414 3.433306 TGGTTCCTGGGACTTAACATG 57.567 47.619 4.84 0.00 0.00 3.21
399 415 2.041081 TGGTTCCTGGGACTTAACATGG 59.959 50.000 4.84 0.00 0.00 3.66
400 416 2.307686 GGTTCCTGGGACTTAACATGGA 59.692 50.000 4.84 0.00 0.00 3.41
401 417 3.344515 GTTCCTGGGACTTAACATGGAC 58.655 50.000 0.00 0.00 0.00 4.02
402 418 2.915869 TCCTGGGACTTAACATGGACT 58.084 47.619 0.00 0.00 0.00 3.85
403 419 4.069312 TCCTGGGACTTAACATGGACTA 57.931 45.455 0.00 0.00 0.00 2.59
404 420 4.431378 TCCTGGGACTTAACATGGACTAA 58.569 43.478 0.00 0.00 0.00 2.24
405 421 4.847512 TCCTGGGACTTAACATGGACTAAA 59.152 41.667 0.00 0.00 0.00 1.85
406 422 5.311121 TCCTGGGACTTAACATGGACTAAAA 59.689 40.000 0.00 0.00 0.00 1.52
407 423 5.648092 CCTGGGACTTAACATGGACTAAAAG 59.352 44.000 0.00 0.00 0.00 2.27
408 424 6.442541 TGGGACTTAACATGGACTAAAAGA 57.557 37.500 0.00 0.00 0.00 2.52
409 425 6.235664 TGGGACTTAACATGGACTAAAAGAC 58.764 40.000 0.00 0.00 0.00 3.01
410 426 5.646793 GGGACTTAACATGGACTAAAAGACC 59.353 44.000 0.00 1.56 0.00 3.85
411 427 6.235664 GGACTTAACATGGACTAAAAGACCA 58.764 40.000 0.00 0.74 43.65 4.02
413 429 8.044908 GGACTTAACATGGACTAAAAGACCATA 58.955 37.037 9.96 0.00 46.31 2.74
414 430 9.614792 GACTTAACATGGACTAAAAGACCATAT 57.385 33.333 9.96 6.06 46.31 1.78
415 431 9.975218 ACTTAACATGGACTAAAAGACCATATT 57.025 29.630 9.96 8.42 46.31 1.28
419 435 9.747898 AACATGGACTAAAAGACCATATTACAA 57.252 29.630 9.96 0.00 46.31 2.41
420 436 9.174166 ACATGGACTAAAAGACCATATTACAAC 57.826 33.333 9.96 0.00 46.31 3.32
421 437 9.396022 CATGGACTAAAAGACCATATTACAACT 57.604 33.333 9.96 0.00 46.31 3.16
431 447 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
442 458 9.145442 ACAACTATAAGTCCCTATAAGTTCCTC 57.855 37.037 0.00 0.00 0.00 3.71
443 459 8.586744 CAACTATAAGTCCCTATAAGTTCCTCC 58.413 40.741 0.00 0.00 0.00 4.30
444 460 8.071235 ACTATAAGTCCCTATAAGTTCCTCCT 57.929 38.462 0.00 0.00 0.00 3.69
445 461 8.521301 ACTATAAGTCCCTATAAGTTCCTCCTT 58.479 37.037 0.00 0.00 0.00 3.36
446 462 5.959583 AAGTCCCTATAAGTTCCTCCTTG 57.040 43.478 0.00 0.00 0.00 3.61
447 463 5.222278 AGTCCCTATAAGTTCCTCCTTGA 57.778 43.478 0.00 0.00 0.00 3.02
448 464 5.212745 AGTCCCTATAAGTTCCTCCTTGAG 58.787 45.833 0.00 0.00 0.00 3.02
449 465 5.043281 AGTCCCTATAAGTTCCTCCTTGAGA 60.043 44.000 0.00 0.00 0.00 3.27
450 466 5.303333 GTCCCTATAAGTTCCTCCTTGAGAG 59.697 48.000 0.00 0.00 42.83 3.20
451 467 5.043281 TCCCTATAAGTTCCTCCTTGAGAGT 60.043 44.000 0.00 0.00 41.47 3.24
452 468 5.303333 CCCTATAAGTTCCTCCTTGAGAGTC 59.697 48.000 0.00 0.00 41.47 3.36
453 469 6.133356 CCTATAAGTTCCTCCTTGAGAGTCT 58.867 44.000 0.00 0.00 41.47 3.24
454 470 6.609616 CCTATAAGTTCCTCCTTGAGAGTCTT 59.390 42.308 0.00 0.00 41.47 3.01
455 471 7.780745 CCTATAAGTTCCTCCTTGAGAGTCTTA 59.219 40.741 0.00 0.00 41.47 2.10
456 472 9.362151 CTATAAGTTCCTCCTTGAGAGTCTTAT 57.638 37.037 0.00 0.00 41.47 1.73
457 473 6.943899 AAGTTCCTCCTTGAGAGTCTTATT 57.056 37.500 0.00 0.00 41.47 1.40
458 474 6.943899 AGTTCCTCCTTGAGAGTCTTATTT 57.056 37.500 0.00 0.00 41.47 1.40
459 475 6.941857 AGTTCCTCCTTGAGAGTCTTATTTC 58.058 40.000 0.00 0.00 41.47 2.17
460 476 6.498651 AGTTCCTCCTTGAGAGTCTTATTTCA 59.501 38.462 0.00 0.00 41.47 2.69
461 477 7.181845 AGTTCCTCCTTGAGAGTCTTATTTCAT 59.818 37.037 0.00 0.00 41.47 2.57
462 478 8.478877 GTTCCTCCTTGAGAGTCTTATTTCATA 58.521 37.037 0.00 0.00 41.47 2.15
463 479 8.609617 TCCTCCTTGAGAGTCTTATTTCATAA 57.390 34.615 0.00 0.00 41.47 1.90
464 480 8.700051 TCCTCCTTGAGAGTCTTATTTCATAAG 58.300 37.037 0.00 0.00 41.47 1.73
465 481 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
466 482 9.883142 CTCCTTGAGAGTCTTATTTCATAAGTT 57.117 33.333 0.00 0.00 37.60 2.66
467 483 9.877178 TCCTTGAGAGTCTTATTTCATAAGTTC 57.123 33.333 0.00 4.08 42.21 3.01
468 484 9.103861 CCTTGAGAGTCTTATTTCATAAGTTCC 57.896 37.037 0.00 0.00 42.21 3.62
469 485 9.658799 CTTGAGAGTCTTATTTCATAAGTTCCA 57.341 33.333 0.00 2.82 42.21 3.53
474 490 9.508567 GAGTCTTATTTCATAAGTTCCAAATGC 57.491 33.333 3.93 0.00 42.21 3.56
475 491 8.470002 AGTCTTATTTCATAAGTTCCAAATGCC 58.530 33.333 3.93 0.00 42.21 4.40
476 492 7.706607 GTCTTATTTCATAAGTTCCAAATGCCC 59.293 37.037 3.93 0.00 42.21 5.36
477 493 7.398618 TCTTATTTCATAAGTTCCAAATGCCCA 59.601 33.333 3.93 0.00 42.21 5.36
478 494 4.799564 TTCATAAGTTCCAAATGCCCAC 57.200 40.909 0.00 0.00 0.00 4.61
479 495 4.046286 TCATAAGTTCCAAATGCCCACT 57.954 40.909 0.00 0.00 0.00 4.00
480 496 4.415596 TCATAAGTTCCAAATGCCCACTT 58.584 39.130 0.00 0.00 0.00 3.16
481 497 4.837860 TCATAAGTTCCAAATGCCCACTTT 59.162 37.500 0.00 0.00 0.00 2.66
482 498 6.013379 TCATAAGTTCCAAATGCCCACTTTA 58.987 36.000 0.00 0.00 0.00 1.85
483 499 6.495181 TCATAAGTTCCAAATGCCCACTTTAA 59.505 34.615 0.00 0.00 0.00 1.52
484 500 4.871933 AGTTCCAAATGCCCACTTTAAG 57.128 40.909 0.00 0.00 0.00 1.85
485 501 4.223144 AGTTCCAAATGCCCACTTTAAGT 58.777 39.130 0.00 0.00 0.00 2.24
486 502 4.280929 AGTTCCAAATGCCCACTTTAAGTC 59.719 41.667 0.00 0.00 0.00 3.01
487 503 3.161866 TCCAAATGCCCACTTTAAGTCC 58.838 45.455 0.00 0.00 0.00 3.85
488 504 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
489 505 2.896685 CAAATGCCCACTTTAAGTCCCA 59.103 45.455 0.00 0.00 0.00 4.37
490 506 2.990740 ATGCCCACTTTAAGTCCCAA 57.009 45.000 0.00 0.00 0.00 4.12
491 507 2.990740 TGCCCACTTTAAGTCCCAAT 57.009 45.000 0.00 0.00 0.00 3.16
492 508 4.601406 ATGCCCACTTTAAGTCCCAATA 57.399 40.909 0.00 0.00 0.00 1.90
493 509 4.390129 TGCCCACTTTAAGTCCCAATAA 57.610 40.909 0.00 0.00 0.00 1.40
494 510 4.340617 TGCCCACTTTAAGTCCCAATAAG 58.659 43.478 0.00 0.00 0.00 1.73
495 511 4.202631 TGCCCACTTTAAGTCCCAATAAGT 60.203 41.667 0.00 0.00 0.00 2.24
496 512 4.398358 GCCCACTTTAAGTCCCAATAAGTC 59.602 45.833 0.00 0.00 0.00 3.01
497 513 4.948004 CCCACTTTAAGTCCCAATAAGTCC 59.052 45.833 0.00 0.00 0.00 3.85
498 514 4.948004 CCACTTTAAGTCCCAATAAGTCCC 59.052 45.833 0.00 0.00 0.00 4.46
499 515 5.281037 CCACTTTAAGTCCCAATAAGTCCCT 60.281 44.000 0.00 0.00 0.00 4.20
500 516 5.880887 CACTTTAAGTCCCAATAAGTCCCTC 59.119 44.000 0.00 0.00 0.00 4.30
501 517 5.045066 ACTTTAAGTCCCAATAAGTCCCTCC 60.045 44.000 0.00 0.00 0.00 4.30
502 518 2.972153 AGTCCCAATAAGTCCCTCCT 57.028 50.000 0.00 0.00 0.00 3.69
503 519 2.482494 AGTCCCAATAAGTCCCTCCTG 58.518 52.381 0.00 0.00 0.00 3.86
504 520 2.197465 GTCCCAATAAGTCCCTCCTGT 58.803 52.381 0.00 0.00 0.00 4.00
505 521 2.576648 GTCCCAATAAGTCCCTCCTGTT 59.423 50.000 0.00 0.00 0.00 3.16
506 522 3.010250 GTCCCAATAAGTCCCTCCTGTTT 59.990 47.826 0.00 0.00 0.00 2.83
507 523 3.660669 TCCCAATAAGTCCCTCCTGTTTT 59.339 43.478 0.00 0.00 0.00 2.43
508 524 3.763897 CCCAATAAGTCCCTCCTGTTTTG 59.236 47.826 0.00 0.00 0.00 2.44
509 525 4.407365 CCAATAAGTCCCTCCTGTTTTGT 58.593 43.478 0.00 0.00 0.00 2.83
510 526 4.832823 CCAATAAGTCCCTCCTGTTTTGTT 59.167 41.667 0.00 0.00 0.00 2.83
511 527 5.304357 CCAATAAGTCCCTCCTGTTTTGTTT 59.696 40.000 0.00 0.00 0.00 2.83
512 528 6.492087 CCAATAAGTCCCTCCTGTTTTGTTTA 59.508 38.462 0.00 0.00 0.00 2.01
513 529 7.309194 CCAATAAGTCCCTCCTGTTTTGTTTAG 60.309 40.741 0.00 0.00 0.00 1.85
514 530 5.382664 AAGTCCCTCCTGTTTTGTTTAGA 57.617 39.130 0.00 0.00 0.00 2.10
515 531 5.584551 AGTCCCTCCTGTTTTGTTTAGAT 57.415 39.130 0.00 0.00 0.00 1.98
516 532 5.316987 AGTCCCTCCTGTTTTGTTTAGATG 58.683 41.667 0.00 0.00 0.00 2.90
517 533 4.459337 GTCCCTCCTGTTTTGTTTAGATGG 59.541 45.833 0.00 0.00 0.00 3.51
518 534 3.763897 CCCTCCTGTTTTGTTTAGATGGG 59.236 47.826 0.00 0.00 0.00 4.00
519 535 4.508405 CCCTCCTGTTTTGTTTAGATGGGA 60.508 45.833 0.00 0.00 31.98 4.37
520 536 4.459337 CCTCCTGTTTTGTTTAGATGGGAC 59.541 45.833 0.00 0.00 0.00 4.46
521 537 5.316987 CTCCTGTTTTGTTTAGATGGGACT 58.683 41.667 0.00 0.00 0.00 3.85
522 538 5.701224 TCCTGTTTTGTTTAGATGGGACTT 58.299 37.500 0.00 0.00 0.00 3.01
523 539 6.843752 TCCTGTTTTGTTTAGATGGGACTTA 58.156 36.000 0.00 0.00 0.00 2.24
524 540 7.291566 TCCTGTTTTGTTTAGATGGGACTTAA 58.708 34.615 0.00 0.00 0.00 1.85
525 541 7.780745 TCCTGTTTTGTTTAGATGGGACTTAAA 59.219 33.333 0.00 0.00 0.00 1.52
526 542 8.082242 CCTGTTTTGTTTAGATGGGACTTAAAG 58.918 37.037 0.00 0.00 0.00 1.85
527 543 7.947282 TGTTTTGTTTAGATGGGACTTAAAGG 58.053 34.615 0.00 0.00 0.00 3.11
528 544 7.014808 TGTTTTGTTTAGATGGGACTTAAAGGG 59.985 37.037 0.00 0.00 0.00 3.95
529 545 5.187621 TGTTTAGATGGGACTTAAAGGGG 57.812 43.478 0.00 0.00 0.00 4.79
530 546 3.945640 TTAGATGGGACTTAAAGGGGC 57.054 47.619 0.00 0.00 0.00 5.80
531 547 1.987080 AGATGGGACTTAAAGGGGCT 58.013 50.000 0.00 0.00 0.00 5.19
532 548 2.288525 AGATGGGACTTAAAGGGGCTT 58.711 47.619 0.00 0.00 0.00 4.35
533 549 3.470868 AGATGGGACTTAAAGGGGCTTA 58.529 45.455 0.00 0.00 0.00 3.09
534 550 4.055094 AGATGGGACTTAAAGGGGCTTAT 58.945 43.478 0.00 0.00 0.00 1.73
535 551 4.482398 AGATGGGACTTAAAGGGGCTTATT 59.518 41.667 0.00 0.00 0.00 1.40
536 552 4.685513 TGGGACTTAAAGGGGCTTATTT 57.314 40.909 0.00 0.00 0.00 1.40
537 553 5.799978 TGGGACTTAAAGGGGCTTATTTA 57.200 39.130 0.00 0.00 0.00 1.40
538 554 6.155247 TGGGACTTAAAGGGGCTTATTTAA 57.845 37.500 0.00 0.00 31.80 1.52
539 555 6.192044 TGGGACTTAAAGGGGCTTATTTAAG 58.808 40.000 18.80 18.80 46.88 1.85
550 566 5.106876 GGCTTATTTAAGTCCCTACACCA 57.893 43.478 0.00 0.00 35.75 4.17
551 567 5.503002 GGCTTATTTAAGTCCCTACACCAA 58.497 41.667 0.00 0.00 35.75 3.67
552 568 6.127101 GGCTTATTTAAGTCCCTACACCAAT 58.873 40.000 0.00 0.00 35.75 3.16
553 569 7.284820 GGCTTATTTAAGTCCCTACACCAATA 58.715 38.462 0.00 0.00 35.75 1.90
554 570 7.776500 GGCTTATTTAAGTCCCTACACCAATAA 59.224 37.037 0.00 0.00 35.75 1.40
555 571 8.837389 GCTTATTTAAGTCCCTACACCAATAAG 58.163 37.037 0.00 0.00 35.50 1.73
556 572 9.901172 CTTATTTAAGTCCCTACACCAATAAGT 57.099 33.333 0.00 0.00 32.21 2.24
557 573 9.895138 TTATTTAAGTCCCTACACCAATAAGTC 57.105 33.333 0.00 0.00 0.00 3.01
558 574 4.838904 AAGTCCCTACACCAATAAGTCC 57.161 45.455 0.00 0.00 0.00 3.85
559 575 3.113043 AGTCCCTACACCAATAAGTCCC 58.887 50.000 0.00 0.00 0.00 4.46
560 576 3.113043 GTCCCTACACCAATAAGTCCCT 58.887 50.000 0.00 0.00 0.00 4.20
561 577 3.112263 TCCCTACACCAATAAGTCCCTG 58.888 50.000 0.00 0.00 0.00 4.45
562 578 2.844348 CCCTACACCAATAAGTCCCTGT 59.156 50.000 0.00 0.00 0.00 4.00
563 579 4.035112 CCCTACACCAATAAGTCCCTGTA 58.965 47.826 0.00 0.00 0.00 2.74
564 580 4.472108 CCCTACACCAATAAGTCCCTGTAA 59.528 45.833 0.00 0.00 0.00 2.41
565 581 5.425630 CCTACACCAATAAGTCCCTGTAAC 58.574 45.833 0.00 0.00 0.00 2.50
566 582 4.296621 ACACCAATAAGTCCCTGTAACC 57.703 45.455 0.00 0.00 0.00 2.85
567 583 3.653836 ACACCAATAAGTCCCTGTAACCA 59.346 43.478 0.00 0.00 0.00 3.67
568 584 4.105057 ACACCAATAAGTCCCTGTAACCAA 59.895 41.667 0.00 0.00 0.00 3.67
569 585 5.074115 CACCAATAAGTCCCTGTAACCAAA 58.926 41.667 0.00 0.00 0.00 3.28
570 586 5.048294 CACCAATAAGTCCCTGTAACCAAAC 60.048 44.000 0.00 0.00 0.00 2.93
571 587 5.074115 CCAATAAGTCCCTGTAACCAAACA 58.926 41.667 0.00 0.00 0.00 2.83
572 588 5.048294 CCAATAAGTCCCTGTAACCAAACAC 60.048 44.000 0.00 0.00 0.00 3.32
573 589 2.651382 AGTCCCTGTAACCAAACACC 57.349 50.000 0.00 0.00 0.00 4.16
574 590 1.144298 AGTCCCTGTAACCAAACACCC 59.856 52.381 0.00 0.00 0.00 4.61
575 591 0.479378 TCCCTGTAACCAAACACCCC 59.521 55.000 0.00 0.00 0.00 4.95
576 592 0.541063 CCCTGTAACCAAACACCCCC 60.541 60.000 0.00 0.00 0.00 5.40
577 593 0.481128 CCTGTAACCAAACACCCCCT 59.519 55.000 0.00 0.00 0.00 4.79
578 594 1.616159 CTGTAACCAAACACCCCCTG 58.384 55.000 0.00 0.00 0.00 4.45
579 595 1.144093 CTGTAACCAAACACCCCCTGA 59.856 52.381 0.00 0.00 0.00 3.86
786 810 2.157668 CACCTTGCGTGTACTTGTCATC 59.842 50.000 0.00 0.00 37.73 2.92
933 974 2.050985 GCTTGCACTGGCGTTGTC 60.051 61.111 0.00 0.00 45.35 3.18
956 997 5.047021 TCCCTATCATTCTATCCTCGCAAAG 60.047 44.000 0.00 0.00 0.00 2.77
958 999 6.098679 CCTATCATTCTATCCTCGCAAAGAG 58.901 44.000 0.00 0.00 46.44 2.85
979 1024 7.072177 AGAGAATAAGAAGATCTATCGAGCG 57.928 40.000 0.00 0.00 0.00 5.03
982 1027 0.885196 AGAAGATCTATCGAGCGGGC 59.115 55.000 0.00 0.00 0.00 6.13
987 1032 1.000163 GATCTATCGAGCGGGCAAGAA 60.000 52.381 0.00 0.00 0.00 2.52
990 1040 0.821517 TATCGAGCGGGCAAGAAGAA 59.178 50.000 0.00 0.00 0.00 2.52
995 1045 0.687354 AGCGGGCAAGAAGAAGAAGA 59.313 50.000 0.00 0.00 0.00 2.87
996 1046 1.082690 GCGGGCAAGAAGAAGAAGAG 58.917 55.000 0.00 0.00 0.00 2.85
1004 1054 4.764308 GCAAGAAGAAGAAGAGGAAATGGT 59.236 41.667 0.00 0.00 0.00 3.55
1872 1938 4.120244 GAGTCTCTCCAGCACCCA 57.880 61.111 0.00 0.00 0.00 4.51
1898 1964 4.052229 CGCCGTCGAGGAACCAGT 62.052 66.667 6.70 0.00 45.00 4.00
1903 1969 0.456221 CGTCGAGGAACCAGTAGCAT 59.544 55.000 0.00 0.00 0.00 3.79
2031 2255 0.970427 TGAGCGTGGAGATGCTGGTA 60.970 55.000 0.00 0.00 44.95 3.25
2107 2331 4.498520 CGCAGATCGGCCAGTCGT 62.499 66.667 12.41 0.00 33.78 4.34
2816 3309 4.847365 ACGATGACGAATTCAAGTGATG 57.153 40.909 6.22 0.00 42.66 3.07
2878 3373 7.038729 TCAGTTTAGAGAAGATGTGGATGAACT 60.039 37.037 0.00 0.00 0.00 3.01
2879 3374 7.064371 CAGTTTAGAGAAGATGTGGATGAACTG 59.936 40.741 0.00 0.00 35.00 3.16
2880 3375 6.611613 TTAGAGAAGATGTGGATGAACTGT 57.388 37.500 0.00 0.00 0.00 3.55
2881 3376 7.718334 TTAGAGAAGATGTGGATGAACTGTA 57.282 36.000 0.00 0.00 0.00 2.74
2882 3377 5.971763 AGAGAAGATGTGGATGAACTGTAC 58.028 41.667 0.00 0.00 0.00 2.90
2883 3378 5.719085 AGAGAAGATGTGGATGAACTGTACT 59.281 40.000 0.00 0.00 0.00 2.73
2884 3379 5.728471 AGAAGATGTGGATGAACTGTACTG 58.272 41.667 0.00 0.00 0.00 2.74
2885 3380 5.247110 AGAAGATGTGGATGAACTGTACTGT 59.753 40.000 0.00 0.00 0.00 3.55
2886 3381 6.437477 AGAAGATGTGGATGAACTGTACTGTA 59.563 38.462 5.76 0.00 0.00 2.74
2887 3382 6.214191 AGATGTGGATGAACTGTACTGTAG 57.786 41.667 5.76 0.00 0.00 2.74
2888 3383 5.717178 AGATGTGGATGAACTGTACTGTAGT 59.283 40.000 5.76 0.00 0.00 2.73
3044 3540 4.343239 TGACAGGATCATCATGAAGATCGT 59.657 41.667 26.33 24.90 41.16 3.73
3049 3545 4.685165 GGATCATCATGAAGATCGTGACAG 59.315 45.833 26.33 1.95 44.28 3.51
3051 3547 3.701040 TCATCATGAAGATCGTGACAGGA 59.299 43.478 0.00 0.00 44.28 3.86
3052 3548 4.343239 TCATCATGAAGATCGTGACAGGAT 59.657 41.667 10.33 10.33 44.28 3.24
3053 3549 4.313277 TCATGAAGATCGTGACAGGATC 57.687 45.455 24.25 24.25 37.48 3.36
3054 3550 3.701040 TCATGAAGATCGTGACAGGATCA 59.299 43.478 29.98 17.71 40.80 2.92
3055 3551 4.343239 TCATGAAGATCGTGACAGGATCAT 59.657 41.667 29.98 22.68 40.80 2.45
3056 3552 4.313277 TGAAGATCGTGACAGGATCATC 57.687 45.455 29.98 27.64 40.80 2.92
3058 3554 2.302260 AGATCGTGACAGGATCATCGT 58.698 47.619 29.98 13.86 40.80 3.73
3059 3555 2.033927 AGATCGTGACAGGATCATCGTG 59.966 50.000 29.98 5.77 40.80 4.35
3060 3556 1.459450 TCGTGACAGGATCATCGTGA 58.541 50.000 14.31 0.00 40.28 4.35
3061 3557 1.816224 TCGTGACAGGATCATCGTGAA 59.184 47.619 14.31 0.00 40.28 3.18
3064 3560 3.489908 CGTGACAGGATCATCGTGAAGAT 60.490 47.826 14.31 0.00 40.28 2.40
3065 3561 4.047822 GTGACAGGATCATCGTGAAGATC 58.952 47.826 14.31 6.55 40.28 2.75
3067 3563 2.035193 ACAGGATCATCGTGAAGATCGG 59.965 50.000 14.31 6.47 41.16 4.18
3068 3564 2.035193 CAGGATCATCGTGAAGATCGGT 59.965 50.000 0.67 0.00 41.16 4.69
3069 3565 3.253432 CAGGATCATCGTGAAGATCGGTA 59.747 47.826 0.67 0.00 41.16 4.02
3071 3567 4.082517 AGGATCATCGTGAAGATCGGTATG 60.083 45.833 8.49 0.00 41.16 2.39
3072 3568 3.643159 TCATCGTGAAGATCGGTATGG 57.357 47.619 0.00 0.00 37.52 2.74
3137 3634 8.675705 TTTTCTCACAACTTCTATGAATGTCA 57.324 30.769 0.00 0.00 0.00 3.58
3138 3635 8.853077 TTTCTCACAACTTCTATGAATGTCAT 57.147 30.769 0.00 0.00 40.72 3.06
3139 3636 8.853077 TTCTCACAACTTCTATGAATGTCATT 57.147 30.769 0.00 0.00 38.26 2.57
3140 3637 8.484641 TCTCACAACTTCTATGAATGTCATTC 57.515 34.615 17.21 17.21 38.26 2.67
3141 3638 8.316946 TCTCACAACTTCTATGAATGTCATTCT 58.683 33.333 22.89 12.83 38.26 2.40
3142 3639 9.591792 CTCACAACTTCTATGAATGTCATTCTA 57.408 33.333 22.89 12.04 38.26 2.10
3143 3640 9.591792 TCACAACTTCTATGAATGTCATTCTAG 57.408 33.333 22.89 19.68 38.26 2.43
3144 3641 9.376075 CACAACTTCTATGAATGTCATTCTAGT 57.624 33.333 22.89 15.33 38.26 2.57
3172 3669 5.003692 TGTTTGCAAGTGCTCAAAACATA 57.996 34.783 13.39 0.00 38.59 2.29
3184 3882 9.935682 AGTGCTCAAAACATATATTCGTTAATG 57.064 29.630 0.00 0.00 0.00 1.90
3185 3883 9.716507 GTGCTCAAAACATATATTCGTTAATGT 57.283 29.630 0.00 0.00 34.11 2.71
3223 3921 9.959721 TTTTAGATTTTACTGTTCATCCTAGCT 57.040 29.630 0.00 0.00 0.00 3.32
3230 3928 9.733556 TTTTACTGTTCATCCTAGCTTATTTCA 57.266 29.630 0.00 0.00 0.00 2.69
3231 3929 8.948631 TTACTGTTCATCCTAGCTTATTTCAG 57.051 34.615 0.00 0.00 0.00 3.02
3232 3930 5.819901 ACTGTTCATCCTAGCTTATTTCAGC 59.180 40.000 0.00 0.00 40.44 4.26
3247 3945 9.840427 GCTTATTTCAGCTTGAACTAATAAACA 57.160 29.630 8.21 0.00 35.89 2.83
3252 3950 7.234187 TCAGCTTGAACTAATAAACATAGCG 57.766 36.000 0.00 0.00 0.00 4.26
3253 3951 6.816640 TCAGCTTGAACTAATAAACATAGCGT 59.183 34.615 0.00 0.00 0.00 5.07
3254 3952 7.010183 TCAGCTTGAACTAATAAACATAGCGTC 59.990 37.037 0.00 0.00 0.00 5.19
3262 3960 1.200519 AAACATAGCGTCCCCTAGCA 58.799 50.000 0.00 0.00 35.48 3.49
3275 3973 2.493500 CCCCTAGCATGAGGTATCCTGA 60.494 54.545 0.00 0.00 34.45 3.86
3277 3975 3.505386 CCTAGCATGAGGTATCCTGAGT 58.495 50.000 0.00 0.00 31.76 3.41
3278 3976 3.257873 CCTAGCATGAGGTATCCTGAGTG 59.742 52.174 0.00 0.00 31.76 3.51
3279 3977 2.045524 AGCATGAGGTATCCTGAGTGG 58.954 52.381 0.00 0.00 31.76 4.00
3288 4269 3.051617 TCCTGAGTGGAAGAGCGAA 57.948 52.632 0.00 0.00 42.94 4.70
3291 4272 1.649664 CTGAGTGGAAGAGCGAATGG 58.350 55.000 0.00 0.00 0.00 3.16
3338 4319 2.651361 CAGTTGCCGTCTCCTCGT 59.349 61.111 0.00 0.00 0.00 4.18
3350 4331 4.082523 CCTCGTCACCCGCACCAT 62.083 66.667 0.00 0.00 36.19 3.55
3381 4362 3.037549 TGGTTTCTTTGGAGGTTGCATT 58.962 40.909 0.00 0.00 0.00 3.56
3382 4363 4.219115 TGGTTTCTTTGGAGGTTGCATTA 58.781 39.130 0.00 0.00 0.00 1.90
3392 4373 4.461081 TGGAGGTTGCATTAATGGTGTTAC 59.539 41.667 17.02 0.00 0.00 2.50
3395 4376 4.462483 AGGTTGCATTAATGGTGTTACCTG 59.538 41.667 17.02 0.00 39.58 4.00
3429 4414 3.575399 GCCTTGTGCTCAACCTTTG 57.425 52.632 0.00 0.00 36.87 2.77
3430 4415 1.032014 GCCTTGTGCTCAACCTTTGA 58.968 50.000 0.00 0.00 38.17 2.69
3433 4418 1.002468 CTTGTGCTCAACCTTTGACGG 60.002 52.381 0.00 0.00 35.46 4.79
3434 4419 0.179234 TGTGCTCAACCTTTGACGGA 59.821 50.000 0.00 0.00 35.46 4.69
3436 4421 1.673920 GTGCTCAACCTTTGACGGAAA 59.326 47.619 0.00 0.00 35.46 3.13
3437 4422 1.946768 TGCTCAACCTTTGACGGAAAG 59.053 47.619 2.92 2.92 40.86 2.62
3438 4423 2.218603 GCTCAACCTTTGACGGAAAGA 58.781 47.619 9.99 0.00 43.50 2.52
3439 4424 2.814336 GCTCAACCTTTGACGGAAAGAT 59.186 45.455 9.99 0.00 43.50 2.40
3440 4425 3.365364 GCTCAACCTTTGACGGAAAGATG 60.365 47.826 9.99 8.74 43.50 2.90
3441 4426 2.552315 TCAACCTTTGACGGAAAGATGC 59.448 45.455 9.99 0.00 43.50 3.91
3443 4428 0.179189 CCTTTGACGGAAAGATGCGC 60.179 55.000 0.00 0.00 45.18 6.09
3444 4429 0.519175 CTTTGACGGAAAGATGCGCG 60.519 55.000 0.00 0.00 45.18 6.86
3472 4462 2.289565 GTAGGCATGTAGTTTCCTGGC 58.710 52.381 0.00 0.00 34.65 4.85
3485 4475 6.875972 AGTTTCCTGGCGAATCCTATATAT 57.124 37.500 0.00 0.00 35.26 0.86
3529 4555 7.636150 ATCTACATGCCATATCATTAAAGGC 57.364 36.000 0.00 0.00 45.41 4.35
3531 4557 4.744237 ACATGCCATATCATTAAAGGCCT 58.256 39.130 0.00 0.00 44.60 5.19
3535 4561 4.105537 TGCCATATCATTAAAGGCCTACCA 59.894 41.667 5.16 0.00 44.60 3.25
3538 4564 5.707298 CCATATCATTAAAGGCCTACCACAG 59.293 44.000 5.16 0.00 39.06 3.66
3539 4565 6.465751 CCATATCATTAAAGGCCTACCACAGA 60.466 42.308 5.16 0.21 39.06 3.41
3540 4566 4.216411 TCATTAAAGGCCTACCACAGAC 57.784 45.455 5.16 0.00 39.06 3.51
3541 4567 3.585289 TCATTAAAGGCCTACCACAGACA 59.415 43.478 5.16 0.00 39.06 3.41
3542 4568 3.695830 TTAAAGGCCTACCACAGACAG 57.304 47.619 5.16 0.00 39.06 3.51
3543 4569 0.693049 AAAGGCCTACCACAGACAGG 59.307 55.000 5.16 0.00 39.06 4.00
3547 4573 3.465990 CCTACCACAGACAGGCATG 57.534 57.895 0.00 0.00 0.00 4.06
3548 4574 0.107508 CCTACCACAGACAGGCATGG 60.108 60.000 2.31 0.00 38.26 3.66
3589 4615 3.127376 TGATCTCATGCAAACATTCCACG 59.873 43.478 0.00 0.00 32.87 4.94
3594 4620 1.674359 TGCAAACATTCCACGTCACT 58.326 45.000 0.00 0.00 0.00 3.41
3598 4626 3.606153 GCAAACATTCCACGTCACTACAC 60.606 47.826 0.00 0.00 0.00 2.90
3637 4665 3.201726 CACTACATGCACCGGAAAAAG 57.798 47.619 9.46 0.00 0.00 2.27
3638 4666 2.552315 CACTACATGCACCGGAAAAAGT 59.448 45.455 9.46 3.40 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.094578 TGGTAGATTTCACCCAAAATTTATTCA 57.905 29.630 0.00 0.00 34.99 2.57
3 4 9.936759 TTGGTAGATTTCACCCAAAATTTATTC 57.063 29.630 0.00 0.00 34.17 1.75
11 12 5.360144 TCGTTTTTGGTAGATTTCACCCAAA 59.640 36.000 8.68 8.68 43.31 3.28
12 13 4.888239 TCGTTTTTGGTAGATTTCACCCAA 59.112 37.500 0.00 0.00 34.99 4.12
13 14 4.462133 TCGTTTTTGGTAGATTTCACCCA 58.538 39.130 0.00 0.00 34.99 4.51
14 15 4.082949 CCTCGTTTTTGGTAGATTTCACCC 60.083 45.833 0.00 0.00 34.99 4.61
15 16 4.082949 CCCTCGTTTTTGGTAGATTTCACC 60.083 45.833 0.00 0.00 36.54 4.02
16 17 4.517832 ACCCTCGTTTTTGGTAGATTTCAC 59.482 41.667 0.00 0.00 0.00 3.18
17 18 4.517453 CACCCTCGTTTTTGGTAGATTTCA 59.483 41.667 0.00 0.00 0.00 2.69
18 19 4.758165 TCACCCTCGTTTTTGGTAGATTTC 59.242 41.667 0.00 0.00 0.00 2.17
19 20 4.721132 TCACCCTCGTTTTTGGTAGATTT 58.279 39.130 0.00 0.00 0.00 2.17
20 21 4.360951 TCACCCTCGTTTTTGGTAGATT 57.639 40.909 0.00 0.00 0.00 2.40
21 22 4.261801 CATCACCCTCGTTTTTGGTAGAT 58.738 43.478 0.00 0.00 0.00 1.98
22 23 3.071892 ACATCACCCTCGTTTTTGGTAGA 59.928 43.478 0.00 0.00 0.00 2.59
23 24 3.408634 ACATCACCCTCGTTTTTGGTAG 58.591 45.455 0.00 0.00 0.00 3.18
69 70 9.197306 TGTAGCAGATCCAAAATAGACTAGTAA 57.803 33.333 0.00 0.00 0.00 2.24
72 73 7.721402 ACTGTAGCAGATCCAAAATAGACTAG 58.279 38.462 2.91 0.00 35.18 2.57
103 107 3.819564 TGACTAGCAAAGTGTCAGTGT 57.180 42.857 0.00 0.00 39.07 3.55
186 190 0.034089 ATGTGAAAGGGCCTGCCTAC 60.034 55.000 6.92 5.12 36.10 3.18
215 226 2.033194 CGTCCCTCCCTGCGTTTTC 61.033 63.158 0.00 0.00 0.00 2.29
247 258 1.002087 ACTCCGTAGCTTTCAGTTGGG 59.998 52.381 0.00 0.00 0.00 4.12
296 312 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
297 313 3.421844 AGACTTATGAACCAAACAGGGC 58.578 45.455 0.00 0.00 43.89 5.19
298 314 5.648092 CCTAAGACTTATGAACCAAACAGGG 59.352 44.000 0.00 0.00 43.89 4.45
299 315 6.371825 GTCCTAAGACTTATGAACCAAACAGG 59.628 42.308 2.20 0.00 40.95 4.00
300 316 7.365840 GTCCTAAGACTTATGAACCAAACAG 57.634 40.000 2.20 0.00 40.10 3.16
327 343 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
328 344 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
329 345 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
330 346 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
331 347 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
332 348 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
333 349 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
334 350 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
335 351 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
336 352 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
337 353 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
338 354 7.766736 ATTAGGGACTTGGGACTTATAAGTT 57.233 36.000 18.96 2.29 38.78 2.66
339 355 8.865244 TTATTAGGGACTTGGGACTTATAAGT 57.135 34.615 18.05 18.05 40.66 2.24
342 358 8.887393 GGATTTATTAGGGACTTGGGACTTATA 58.113 37.037 0.00 0.00 41.75 0.98
343 359 7.202289 GGGATTTATTAGGGACTTGGGACTTAT 60.202 40.741 0.00 0.00 41.75 1.73
344 360 6.102174 GGGATTTATTAGGGACTTGGGACTTA 59.898 42.308 0.00 0.00 41.75 2.24
345 361 5.103643 GGGATTTATTAGGGACTTGGGACTT 60.104 44.000 0.00 0.00 41.75 3.01
346 362 4.415846 GGGATTTATTAGGGACTTGGGACT 59.584 45.833 0.00 0.00 41.75 3.85
347 363 4.415846 AGGGATTTATTAGGGACTTGGGAC 59.584 45.833 0.00 0.00 41.75 4.46
348 364 4.652628 AGGGATTTATTAGGGACTTGGGA 58.347 43.478 0.00 0.00 41.75 4.37
349 365 5.611408 AGTAGGGATTTATTAGGGACTTGGG 59.389 44.000 0.00 0.00 41.75 4.12
350 366 6.765355 AGTAGGGATTTATTAGGGACTTGG 57.235 41.667 0.00 0.00 41.75 3.61
351 367 7.574607 ACAAGTAGGGATTTATTAGGGACTTG 58.425 38.462 8.88 8.88 44.23 3.16
352 368 7.766736 ACAAGTAGGGATTTATTAGGGACTT 57.233 36.000 0.00 0.00 41.75 3.01
353 369 7.766736 AACAAGTAGGGATTTATTAGGGACT 57.233 36.000 0.00 0.00 46.37 3.85
354 370 7.284716 CCAAACAAGTAGGGATTTATTAGGGAC 59.715 40.741 0.00 0.00 0.00 4.46
355 371 7.036425 ACCAAACAAGTAGGGATTTATTAGGGA 60.036 37.037 0.00 0.00 0.00 4.20
356 372 7.123383 ACCAAACAAGTAGGGATTTATTAGGG 58.877 38.462 0.00 0.00 0.00 3.53
357 373 8.589701 AACCAAACAAGTAGGGATTTATTAGG 57.410 34.615 0.00 0.00 0.00 2.69
358 374 8.683615 GGAACCAAACAAGTAGGGATTTATTAG 58.316 37.037 0.00 0.00 0.00 1.73
359 375 8.395605 AGGAACCAAACAAGTAGGGATTTATTA 58.604 33.333 0.00 0.00 0.00 0.98
360 376 7.178451 CAGGAACCAAACAAGTAGGGATTTATT 59.822 37.037 0.00 0.00 0.00 1.40
361 377 6.663523 CAGGAACCAAACAAGTAGGGATTTAT 59.336 38.462 0.00 0.00 0.00 1.40
362 378 6.007703 CAGGAACCAAACAAGTAGGGATTTA 58.992 40.000 0.00 0.00 0.00 1.40
363 379 4.832823 CAGGAACCAAACAAGTAGGGATTT 59.167 41.667 0.00 0.00 0.00 2.17
364 380 4.407365 CAGGAACCAAACAAGTAGGGATT 58.593 43.478 0.00 0.00 0.00 3.01
365 381 3.245264 CCAGGAACCAAACAAGTAGGGAT 60.245 47.826 0.00 0.00 0.00 3.85
366 382 2.107552 CCAGGAACCAAACAAGTAGGGA 59.892 50.000 0.00 0.00 0.00 4.20
367 383 2.514803 CCAGGAACCAAACAAGTAGGG 58.485 52.381 0.00 0.00 0.00 3.53
368 384 2.107552 TCCCAGGAACCAAACAAGTAGG 59.892 50.000 0.00 0.00 0.00 3.18
369 385 3.146847 GTCCCAGGAACCAAACAAGTAG 58.853 50.000 0.00 0.00 0.00 2.57
370 386 2.781174 AGTCCCAGGAACCAAACAAGTA 59.219 45.455 0.00 0.00 0.00 2.24
371 387 1.569072 AGTCCCAGGAACCAAACAAGT 59.431 47.619 0.00 0.00 0.00 3.16
372 388 2.364972 AGTCCCAGGAACCAAACAAG 57.635 50.000 0.00 0.00 0.00 3.16
373 389 2.838637 AAGTCCCAGGAACCAAACAA 57.161 45.000 0.00 0.00 0.00 2.83
374 390 3.053544 TGTTAAGTCCCAGGAACCAAACA 60.054 43.478 0.00 0.00 0.00 2.83
375 391 3.558033 TGTTAAGTCCCAGGAACCAAAC 58.442 45.455 0.00 0.00 0.00 2.93
376 392 3.955524 TGTTAAGTCCCAGGAACCAAA 57.044 42.857 0.00 0.00 0.00 3.28
377 393 3.499563 CCATGTTAAGTCCCAGGAACCAA 60.500 47.826 0.00 0.00 0.00 3.67
378 394 2.041081 CCATGTTAAGTCCCAGGAACCA 59.959 50.000 0.00 0.00 0.00 3.67
379 395 2.307686 TCCATGTTAAGTCCCAGGAACC 59.692 50.000 0.00 0.00 0.00 3.62
380 396 3.009143 AGTCCATGTTAAGTCCCAGGAAC 59.991 47.826 0.00 0.00 0.00 3.62
381 397 3.256704 AGTCCATGTTAAGTCCCAGGAA 58.743 45.455 0.00 0.00 0.00 3.36
382 398 2.915869 AGTCCATGTTAAGTCCCAGGA 58.084 47.619 0.00 0.00 0.00 3.86
383 399 4.837093 TTAGTCCATGTTAAGTCCCAGG 57.163 45.455 0.00 0.00 0.00 4.45
384 400 6.371825 GTCTTTTAGTCCATGTTAAGTCCCAG 59.628 42.308 0.00 0.00 0.00 4.45
385 401 6.235664 GTCTTTTAGTCCATGTTAAGTCCCA 58.764 40.000 0.00 0.00 0.00 4.37
386 402 5.646793 GGTCTTTTAGTCCATGTTAAGTCCC 59.353 44.000 0.00 0.00 0.00 4.46
387 403 6.235664 TGGTCTTTTAGTCCATGTTAAGTCC 58.764 40.000 0.00 0.00 28.55 3.85
388 404 7.923414 ATGGTCTTTTAGTCCATGTTAAGTC 57.077 36.000 4.95 0.00 41.46 3.01
389 405 9.975218 AATATGGTCTTTTAGTCCATGTTAAGT 57.025 29.630 13.41 0.00 42.62 2.24
393 409 9.747898 TTGTAATATGGTCTTTTAGTCCATGTT 57.252 29.630 15.13 15.13 42.62 2.71
394 410 9.174166 GTTGTAATATGGTCTTTTAGTCCATGT 57.826 33.333 13.41 6.18 42.62 3.21
395 411 9.396022 AGTTGTAATATGGTCTTTTAGTCCATG 57.604 33.333 13.41 0.00 42.62 3.66
405 421 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
416 432 9.145442 GAGGAACTTATAGGGACTTATAGTTGT 57.855 37.037 0.00 0.00 41.55 3.32
417 433 8.586744 GGAGGAACTTATAGGGACTTATAGTTG 58.413 40.741 0.00 0.00 41.55 3.16
418 434 8.521301 AGGAGGAACTTATAGGGACTTATAGTT 58.479 37.037 0.00 0.00 41.55 2.24
419 435 8.071235 AGGAGGAACTTATAGGGACTTATAGT 57.929 38.462 0.00 0.00 41.55 2.12
420 436 8.808092 CAAGGAGGAACTTATAGGGACTTATAG 58.192 40.741 0.00 0.00 41.55 1.31
421 437 8.517047 TCAAGGAGGAACTTATAGGGACTTATA 58.483 37.037 0.00 0.00 41.55 0.98
422 438 7.371043 TCAAGGAGGAACTTATAGGGACTTAT 58.629 38.462 0.00 0.00 41.55 1.73
423 439 6.748969 TCAAGGAGGAACTTATAGGGACTTA 58.251 40.000 0.00 0.00 41.55 2.24
424 440 5.600749 TCAAGGAGGAACTTATAGGGACTT 58.399 41.667 0.00 0.00 41.55 3.01
425 441 5.043281 TCTCAAGGAGGAACTTATAGGGACT 60.043 44.000 0.00 0.00 41.55 3.85
426 442 5.209659 TCTCAAGGAGGAACTTATAGGGAC 58.790 45.833 0.00 0.00 41.55 4.46
427 443 5.043281 ACTCTCAAGGAGGAACTTATAGGGA 60.043 44.000 0.00 0.00 45.83 4.20
428 444 5.212745 ACTCTCAAGGAGGAACTTATAGGG 58.787 45.833 0.00 0.00 45.83 3.53
429 445 6.133356 AGACTCTCAAGGAGGAACTTATAGG 58.867 44.000 0.00 0.00 45.83 2.57
430 446 7.654022 AAGACTCTCAAGGAGGAACTTATAG 57.346 40.000 0.00 0.00 45.83 1.31
431 447 9.716556 AATAAGACTCTCAAGGAGGAACTTATA 57.283 33.333 14.82 0.00 45.83 0.98
432 448 8.616799 AATAAGACTCTCAAGGAGGAACTTAT 57.383 34.615 0.00 0.00 45.83 1.73
433 449 8.437274 AAATAAGACTCTCAAGGAGGAACTTA 57.563 34.615 0.00 0.00 45.83 2.24
434 450 6.943899 AATAAGACTCTCAAGGAGGAACTT 57.056 37.500 0.00 0.00 45.83 2.66
435 451 6.498651 TGAAATAAGACTCTCAAGGAGGAACT 59.501 38.462 0.00 0.00 45.83 3.01
436 452 6.702329 TGAAATAAGACTCTCAAGGAGGAAC 58.298 40.000 0.00 0.00 45.83 3.62
437 453 6.935240 TGAAATAAGACTCTCAAGGAGGAA 57.065 37.500 0.00 0.00 45.83 3.36
438 454 8.609617 TTATGAAATAAGACTCTCAAGGAGGA 57.390 34.615 0.00 0.00 38.94 3.71
453 469 7.180051 AGTGGGCATTTGGAACTTATGAAATAA 59.820 33.333 0.00 0.00 36.20 1.40
454 470 6.667414 AGTGGGCATTTGGAACTTATGAAATA 59.333 34.615 0.00 0.00 0.00 1.40
455 471 5.484998 AGTGGGCATTTGGAACTTATGAAAT 59.515 36.000 0.00 0.00 0.00 2.17
456 472 4.837860 AGTGGGCATTTGGAACTTATGAAA 59.162 37.500 0.00 0.00 0.00 2.69
457 473 4.415596 AGTGGGCATTTGGAACTTATGAA 58.584 39.130 0.00 0.00 0.00 2.57
458 474 4.046286 AGTGGGCATTTGGAACTTATGA 57.954 40.909 0.00 0.00 0.00 2.15
459 475 4.806640 AAGTGGGCATTTGGAACTTATG 57.193 40.909 0.00 0.00 29.56 1.90
460 476 6.496911 ACTTAAAGTGGGCATTTGGAACTTAT 59.503 34.615 0.00 0.00 31.09 1.73
461 477 5.836358 ACTTAAAGTGGGCATTTGGAACTTA 59.164 36.000 0.00 0.00 31.09 2.24
462 478 4.653801 ACTTAAAGTGGGCATTTGGAACTT 59.346 37.500 0.00 0.00 32.60 2.66
463 479 4.223144 ACTTAAAGTGGGCATTTGGAACT 58.777 39.130 0.00 0.00 0.00 3.01
464 480 4.556233 GACTTAAAGTGGGCATTTGGAAC 58.444 43.478 0.00 0.00 0.00 3.62
465 481 3.576550 GGACTTAAAGTGGGCATTTGGAA 59.423 43.478 0.00 0.00 0.00 3.53
466 482 3.161866 GGACTTAAAGTGGGCATTTGGA 58.838 45.455 0.00 0.00 0.00 3.53
467 483 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
468 484 2.896685 TGGGACTTAAAGTGGGCATTTG 59.103 45.455 0.00 0.00 0.00 2.32
469 485 3.252554 TGGGACTTAAAGTGGGCATTT 57.747 42.857 0.00 0.00 0.00 2.32
470 486 2.990740 TGGGACTTAAAGTGGGCATT 57.009 45.000 0.00 0.00 0.00 3.56
471 487 2.990740 TTGGGACTTAAAGTGGGCAT 57.009 45.000 0.00 0.00 0.00 4.40
472 488 2.990740 ATTGGGACTTAAAGTGGGCA 57.009 45.000 0.00 0.00 0.00 5.36
473 489 4.341487 ACTTATTGGGACTTAAAGTGGGC 58.659 43.478 0.00 0.00 0.00 5.36
474 490 4.948004 GGACTTATTGGGACTTAAAGTGGG 59.052 45.833 0.00 0.00 0.00 4.61
475 491 4.948004 GGGACTTATTGGGACTTAAAGTGG 59.052 45.833 0.00 0.00 0.00 4.00
476 492 5.816682 AGGGACTTATTGGGACTTAAAGTG 58.183 41.667 0.00 0.00 27.25 3.16
477 493 5.045066 GGAGGGACTTATTGGGACTTAAAGT 60.045 44.000 0.00 0.00 41.55 2.66
478 494 5.191921 AGGAGGGACTTATTGGGACTTAAAG 59.808 44.000 0.00 0.00 41.55 1.85
479 495 5.045140 CAGGAGGGACTTATTGGGACTTAAA 60.045 44.000 0.00 0.00 41.55 1.52
480 496 4.473559 CAGGAGGGACTTATTGGGACTTAA 59.526 45.833 0.00 0.00 41.55 1.85
481 497 4.037927 CAGGAGGGACTTATTGGGACTTA 58.962 47.826 0.00 0.00 41.55 2.24
482 498 2.846827 CAGGAGGGACTTATTGGGACTT 59.153 50.000 0.00 0.00 41.55 3.01
483 499 2.225908 ACAGGAGGGACTTATTGGGACT 60.226 50.000 0.00 0.00 41.55 3.85
484 500 2.197465 ACAGGAGGGACTTATTGGGAC 58.803 52.381 0.00 0.00 41.55 4.46
485 501 2.661176 ACAGGAGGGACTTATTGGGA 57.339 50.000 0.00 0.00 41.55 4.37
486 502 3.739401 AAACAGGAGGGACTTATTGGG 57.261 47.619 0.00 0.00 41.55 4.12
487 503 4.407365 ACAAAACAGGAGGGACTTATTGG 58.593 43.478 0.00 0.00 41.55 3.16
488 504 6.405278 AAACAAAACAGGAGGGACTTATTG 57.595 37.500 0.00 0.00 41.55 1.90
489 505 7.523415 TCTAAACAAAACAGGAGGGACTTATT 58.477 34.615 0.00 0.00 41.55 1.40
490 506 7.086685 TCTAAACAAAACAGGAGGGACTTAT 57.913 36.000 0.00 0.00 41.55 1.73
491 507 6.503560 TCTAAACAAAACAGGAGGGACTTA 57.496 37.500 0.00 0.00 41.55 2.24
492 508 5.382664 TCTAAACAAAACAGGAGGGACTT 57.617 39.130 0.00 0.00 41.55 3.01
494 510 4.459337 CCATCTAAACAAAACAGGAGGGAC 59.541 45.833 0.00 0.00 0.00 4.46
495 511 4.508405 CCCATCTAAACAAAACAGGAGGGA 60.508 45.833 0.00 0.00 33.23 4.20
496 512 3.763897 CCCATCTAAACAAAACAGGAGGG 59.236 47.826 0.00 0.00 0.00 4.30
497 513 4.459337 GTCCCATCTAAACAAAACAGGAGG 59.541 45.833 0.00 0.00 0.00 4.30
498 514 5.316987 AGTCCCATCTAAACAAAACAGGAG 58.683 41.667 0.00 0.00 0.00 3.69
499 515 5.319043 AGTCCCATCTAAACAAAACAGGA 57.681 39.130 0.00 0.00 0.00 3.86
500 516 7.519032 TTAAGTCCCATCTAAACAAAACAGG 57.481 36.000 0.00 0.00 0.00 4.00
501 517 8.082242 CCTTTAAGTCCCATCTAAACAAAACAG 58.918 37.037 0.00 0.00 0.00 3.16
502 518 7.014808 CCCTTTAAGTCCCATCTAAACAAAACA 59.985 37.037 0.00 0.00 0.00 2.83
503 519 7.375834 CCCTTTAAGTCCCATCTAAACAAAAC 58.624 38.462 0.00 0.00 0.00 2.43
504 520 6.495526 CCCCTTTAAGTCCCATCTAAACAAAA 59.504 38.462 0.00 0.00 0.00 2.44
505 521 6.014012 CCCCTTTAAGTCCCATCTAAACAAA 58.986 40.000 0.00 0.00 0.00 2.83
506 522 5.576128 CCCCTTTAAGTCCCATCTAAACAA 58.424 41.667 0.00 0.00 0.00 2.83
507 523 4.569015 GCCCCTTTAAGTCCCATCTAAACA 60.569 45.833 0.00 0.00 0.00 2.83
508 524 3.952323 GCCCCTTTAAGTCCCATCTAAAC 59.048 47.826 0.00 0.00 0.00 2.01
509 525 3.856206 AGCCCCTTTAAGTCCCATCTAAA 59.144 43.478 0.00 0.00 0.00 1.85
510 526 3.470868 AGCCCCTTTAAGTCCCATCTAA 58.529 45.455 0.00 0.00 0.00 2.10
511 527 3.145559 AGCCCCTTTAAGTCCCATCTA 57.854 47.619 0.00 0.00 0.00 1.98
512 528 1.987080 AGCCCCTTTAAGTCCCATCT 58.013 50.000 0.00 0.00 0.00 2.90
513 529 2.828661 AAGCCCCTTTAAGTCCCATC 57.171 50.000 0.00 0.00 0.00 3.51
514 530 4.899898 AATAAGCCCCTTTAAGTCCCAT 57.100 40.909 0.00 0.00 0.00 4.00
515 531 4.685513 AAATAAGCCCCTTTAAGTCCCA 57.314 40.909 0.00 0.00 0.00 4.37
516 532 6.710597 CTTAAATAAGCCCCTTTAAGTCCC 57.289 41.667 11.35 0.00 38.90 4.46
527 543 4.080186 TGGTGTAGGGACTTAAATAAGCCC 60.080 45.833 17.74 17.74 43.70 5.19
528 544 5.106876 TGGTGTAGGGACTTAAATAAGCC 57.893 43.478 0.13 3.34 41.75 4.35
529 545 8.741603 TTATTGGTGTAGGGACTTAAATAAGC 57.258 34.615 0.13 0.00 41.75 3.09
530 546 9.901172 ACTTATTGGTGTAGGGACTTAAATAAG 57.099 33.333 0.00 0.00 41.75 1.73
531 547 9.895138 GACTTATTGGTGTAGGGACTTAAATAA 57.105 33.333 0.00 0.00 41.75 1.40
532 548 8.488668 GGACTTATTGGTGTAGGGACTTAAATA 58.511 37.037 0.00 0.00 41.75 1.40
533 549 7.344134 GGACTTATTGGTGTAGGGACTTAAAT 58.656 38.462 0.00 0.00 41.75 1.40
534 550 6.296605 GGGACTTATTGGTGTAGGGACTTAAA 60.297 42.308 0.00 0.00 41.75 1.52
535 551 5.190330 GGGACTTATTGGTGTAGGGACTTAA 59.810 44.000 0.00 0.00 41.75 1.85
536 552 4.718276 GGGACTTATTGGTGTAGGGACTTA 59.282 45.833 0.00 0.00 41.75 2.24
537 553 3.522343 GGGACTTATTGGTGTAGGGACTT 59.478 47.826 0.00 0.00 41.75 3.01
538 554 3.113043 GGGACTTATTGGTGTAGGGACT 58.887 50.000 0.00 0.00 46.37 3.85
539 555 3.113043 AGGGACTTATTGGTGTAGGGAC 58.887 50.000 0.00 0.00 27.25 4.46
540 556 3.112263 CAGGGACTTATTGGTGTAGGGA 58.888 50.000 0.00 0.00 34.60 4.20
541 557 2.844348 ACAGGGACTTATTGGTGTAGGG 59.156 50.000 0.00 0.00 34.60 3.53
542 558 5.425630 GTTACAGGGACTTATTGGTGTAGG 58.574 45.833 0.00 0.00 34.60 3.18
543 559 5.046159 TGGTTACAGGGACTTATTGGTGTAG 60.046 44.000 0.00 0.00 34.60 2.74
544 560 4.845225 TGGTTACAGGGACTTATTGGTGTA 59.155 41.667 0.00 0.00 34.60 2.90
545 561 3.653836 TGGTTACAGGGACTTATTGGTGT 59.346 43.478 0.00 0.00 34.60 4.16
546 562 4.295141 TGGTTACAGGGACTTATTGGTG 57.705 45.455 0.00 0.00 34.60 4.17
547 563 5.074804 GTTTGGTTACAGGGACTTATTGGT 58.925 41.667 0.00 0.00 34.60 3.67
548 564 5.048294 GTGTTTGGTTACAGGGACTTATTGG 60.048 44.000 0.00 0.00 34.60 3.16
549 565 5.048294 GGTGTTTGGTTACAGGGACTTATTG 60.048 44.000 0.00 0.00 34.60 1.90
550 566 5.074804 GGTGTTTGGTTACAGGGACTTATT 58.925 41.667 0.00 0.00 34.60 1.40
551 567 4.507869 GGGTGTTTGGTTACAGGGACTTAT 60.508 45.833 0.00 0.00 34.60 1.73
552 568 3.181441 GGGTGTTTGGTTACAGGGACTTA 60.181 47.826 0.00 0.00 34.60 2.24
553 569 2.423803 GGGTGTTTGGTTACAGGGACTT 60.424 50.000 0.00 0.00 34.60 3.01
554 570 1.144298 GGGTGTTTGGTTACAGGGACT 59.856 52.381 0.00 0.00 43.88 3.85
555 571 1.612676 GGGTGTTTGGTTACAGGGAC 58.387 55.000 0.00 0.00 0.00 4.46
556 572 0.479378 GGGGTGTTTGGTTACAGGGA 59.521 55.000 0.00 0.00 0.00 4.20
557 573 0.541063 GGGGGTGTTTGGTTACAGGG 60.541 60.000 0.00 0.00 0.00 4.45
558 574 0.481128 AGGGGGTGTTTGGTTACAGG 59.519 55.000 0.00 0.00 0.00 4.00
559 575 1.144093 TCAGGGGGTGTTTGGTTACAG 59.856 52.381 0.00 0.00 0.00 2.74
560 576 1.223501 TCAGGGGGTGTTTGGTTACA 58.776 50.000 0.00 0.00 0.00 2.41
561 577 2.368311 TTCAGGGGGTGTTTGGTTAC 57.632 50.000 0.00 0.00 0.00 2.50
562 578 2.178106 ACATTCAGGGGGTGTTTGGTTA 59.822 45.455 0.00 0.00 0.00 2.85
563 579 1.062505 ACATTCAGGGGGTGTTTGGTT 60.063 47.619 0.00 0.00 0.00 3.67
564 580 0.560688 ACATTCAGGGGGTGTTTGGT 59.439 50.000 0.00 0.00 0.00 3.67
565 581 0.968405 CACATTCAGGGGGTGTTTGG 59.032 55.000 0.00 0.00 0.00 3.28
566 582 0.318120 GCACATTCAGGGGGTGTTTG 59.682 55.000 0.00 0.00 35.05 2.93
567 583 0.831711 GGCACATTCAGGGGGTGTTT 60.832 55.000 0.00 0.00 35.05 2.83
568 584 1.228862 GGCACATTCAGGGGGTGTT 60.229 57.895 0.00 0.00 35.05 3.32
569 585 2.440599 GGCACATTCAGGGGGTGT 59.559 61.111 0.00 0.00 35.05 4.16
570 586 2.751436 CGGCACATTCAGGGGGTG 60.751 66.667 0.00 0.00 35.68 4.61
571 587 4.047125 CCGGCACATTCAGGGGGT 62.047 66.667 0.00 0.00 0.00 4.95
576 592 3.803082 CACCGCCGGCACATTCAG 61.803 66.667 28.98 7.87 0.00 3.02
786 810 3.917988 GGCAACCAAAAGATTTGGAGAG 58.082 45.455 24.50 15.17 42.06 3.20
875 904 2.288030 ACGACTAGTGTGTACCAGTTGC 60.288 50.000 0.00 0.00 34.45 4.17
927 968 5.620205 CGAGGATAGAATGATAGGGACAACG 60.620 48.000 0.00 0.00 0.00 4.10
933 974 4.808414 TTGCGAGGATAGAATGATAGGG 57.192 45.455 0.00 0.00 0.00 3.53
971 1016 0.821517 TTCTTCTTGCCCGCTCGATA 59.178 50.000 0.00 0.00 0.00 2.92
979 1024 3.425162 TTCCTCTTCTTCTTCTTGCCC 57.575 47.619 0.00 0.00 0.00 5.36
982 1027 5.121454 CGACCATTTCCTCTTCTTCTTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
987 1032 2.355209 GCCGACCATTTCCTCTTCTTCT 60.355 50.000 0.00 0.00 0.00 2.85
990 1040 0.108138 CGCCGACCATTTCCTCTTCT 60.108 55.000 0.00 0.00 0.00 2.85
1464 1515 2.273449 CCCTTGAGCAGCCCGATT 59.727 61.111 0.00 0.00 0.00 3.34
1782 1848 1.936631 AGGAAGAGGATGAGGAGGAGT 59.063 52.381 0.00 0.00 0.00 3.85
1878 1944 2.183555 GGTTCCTCGACGGCGATT 59.816 61.111 16.81 0.00 46.80 3.34
1898 1964 2.233676 TCCTCTTTCTTCGTGCATGCTA 59.766 45.455 20.33 2.15 0.00 3.49
1903 1969 0.671796 TCGTCCTCTTTCTTCGTGCA 59.328 50.000 0.00 0.00 0.00 4.57
2031 2255 1.281960 CACGGACACGACGAAGAGT 59.718 57.895 0.00 0.00 44.60 3.24
2107 2331 2.033448 CTTGTGCGGGTAGCCCAA 59.967 61.111 5.12 3.21 45.83 4.12
2295 2770 2.722201 GGCGTAGAGGGACTGTGGG 61.722 68.421 0.00 0.00 41.55 4.61
2298 2773 3.450115 GCGGCGTAGAGGGACTGT 61.450 66.667 9.37 0.00 41.55 3.55
2526 3004 2.167861 GCAGATCTTGTCGCCGACC 61.168 63.158 15.60 0.00 0.00 4.79
2695 3173 0.391661 CCTCCATGATAATCGGCGGG 60.392 60.000 7.21 0.00 0.00 6.13
2769 3262 3.004106 CCTCCTGCAGTTTCTTGTTCTTG 59.996 47.826 13.81 0.00 0.00 3.02
2849 3342 8.981659 TCATCCACATCTTCTCTAAACTGATTA 58.018 33.333 0.00 0.00 0.00 1.75
2850 3343 7.855375 TCATCCACATCTTCTCTAAACTGATT 58.145 34.615 0.00 0.00 0.00 2.57
2851 3344 7.429374 TCATCCACATCTTCTCTAAACTGAT 57.571 36.000 0.00 0.00 0.00 2.90
2852 3345 6.857437 TCATCCACATCTTCTCTAAACTGA 57.143 37.500 0.00 0.00 0.00 3.41
2878 3373 8.635328 TGAGTAACATCAGAAAACTACAGTACA 58.365 33.333 0.00 0.00 0.00 2.90
2879 3374 9.640963 ATGAGTAACATCAGAAAACTACAGTAC 57.359 33.333 0.00 0.00 33.46 2.73
2881 3376 8.993121 CAATGAGTAACATCAGAAAACTACAGT 58.007 33.333 0.00 0.00 38.38 3.55
2882 3377 8.993121 ACAATGAGTAACATCAGAAAACTACAG 58.007 33.333 0.00 0.00 38.38 2.74
2883 3378 8.902540 ACAATGAGTAACATCAGAAAACTACA 57.097 30.769 0.00 0.00 38.38 2.74
2884 3379 8.988934 TGACAATGAGTAACATCAGAAAACTAC 58.011 33.333 0.00 0.00 38.38 2.73
2885 3380 9.554395 TTGACAATGAGTAACATCAGAAAACTA 57.446 29.630 0.00 0.00 38.38 2.24
2886 3381 8.450578 TTGACAATGAGTAACATCAGAAAACT 57.549 30.769 0.00 0.00 38.38 2.66
2887 3382 9.683069 ATTTGACAATGAGTAACATCAGAAAAC 57.317 29.630 0.00 0.00 38.38 2.43
2916 3411 9.458727 TGGAAACCGTATTAATTACCACATTAA 57.541 29.630 0.00 0.00 33.98 1.40
2918 3413 7.941431 TGGAAACCGTATTAATTACCACATT 57.059 32.000 0.00 0.00 0.00 2.71
2919 3414 7.764331 GTTGGAAACCGTATTAATTACCACAT 58.236 34.615 0.00 0.00 42.21 3.21
2920 3415 7.143514 GTTGGAAACCGTATTAATTACCACA 57.856 36.000 0.00 0.00 42.21 4.17
3044 3540 3.243201 CGATCTTCACGATGATCCTGTCA 60.243 47.826 14.10 0.00 42.06 3.58
3045 3541 3.304257 CGATCTTCACGATGATCCTGTC 58.696 50.000 14.10 0.00 38.21 3.51
3046 3542 2.035193 CCGATCTTCACGATGATCCTGT 59.965 50.000 14.10 0.00 38.21 4.00
3049 3545 2.802787 ACCGATCTTCACGATGATCC 57.197 50.000 14.10 1.95 38.21 3.36
3051 3547 3.615110 GCCATACCGATCTTCACGATGAT 60.615 47.826 0.00 0.00 30.84 2.45
3052 3548 2.288213 GCCATACCGATCTTCACGATGA 60.288 50.000 0.00 0.00 30.84 2.92
3053 3549 2.061773 GCCATACCGATCTTCACGATG 58.938 52.381 0.00 0.00 30.84 3.84
3054 3550 1.686587 TGCCATACCGATCTTCACGAT 59.313 47.619 0.00 0.00 34.25 3.73
3055 3551 1.107945 TGCCATACCGATCTTCACGA 58.892 50.000 0.00 0.00 0.00 4.35
3056 3552 1.934589 TTGCCATACCGATCTTCACG 58.065 50.000 0.00 0.00 0.00 4.35
3058 3554 4.522114 TCATTTTGCCATACCGATCTTCA 58.478 39.130 0.00 0.00 0.00 3.02
3059 3555 5.695851 ATCATTTTGCCATACCGATCTTC 57.304 39.130 0.00 0.00 0.00 2.87
3060 3556 6.096705 TGAAATCATTTTGCCATACCGATCTT 59.903 34.615 0.00 0.00 0.00 2.40
3061 3557 5.593909 TGAAATCATTTTGCCATACCGATCT 59.406 36.000 0.00 0.00 0.00 2.75
3064 3560 5.651387 TTGAAATCATTTTGCCATACCGA 57.349 34.783 0.00 0.00 0.00 4.69
3065 3561 6.718454 TTTTGAAATCATTTTGCCATACCG 57.282 33.333 0.00 0.00 0.00 4.02
3137 3634 7.121759 AGCACTTGCAAACATTCATACTAGAAT 59.878 33.333 0.00 0.00 45.16 2.40
3138 3635 6.430925 AGCACTTGCAAACATTCATACTAGAA 59.569 34.615 0.00 0.00 45.16 2.10
3139 3636 5.939883 AGCACTTGCAAACATTCATACTAGA 59.060 36.000 0.00 0.00 45.16 2.43
3140 3637 6.128200 TGAGCACTTGCAAACATTCATACTAG 60.128 38.462 0.00 0.00 45.16 2.57
3141 3638 5.704978 TGAGCACTTGCAAACATTCATACTA 59.295 36.000 0.00 0.00 45.16 1.82
3142 3639 4.520111 TGAGCACTTGCAAACATTCATACT 59.480 37.500 0.00 0.00 45.16 2.12
3143 3640 4.797471 TGAGCACTTGCAAACATTCATAC 58.203 39.130 0.00 0.00 45.16 2.39
3144 3641 5.450592 TTGAGCACTTGCAAACATTCATA 57.549 34.783 0.00 0.00 45.16 2.15
3145 3642 4.325028 TTGAGCACTTGCAAACATTCAT 57.675 36.364 0.00 0.00 45.16 2.57
3146 3643 3.797451 TTGAGCACTTGCAAACATTCA 57.203 38.095 0.00 0.00 45.16 2.57
3147 3644 4.329528 TGTTTTGAGCACTTGCAAACATTC 59.670 37.500 12.03 0.00 45.16 2.67
3148 3645 4.252073 TGTTTTGAGCACTTGCAAACATT 58.748 34.783 12.03 0.00 45.16 2.71
3149 3646 3.859443 TGTTTTGAGCACTTGCAAACAT 58.141 36.364 12.03 0.00 45.16 2.71
3150 3647 3.309961 TGTTTTGAGCACTTGCAAACA 57.690 38.095 12.03 12.03 45.16 2.83
3151 3648 7.816945 ATATATGTTTTGAGCACTTGCAAAC 57.183 32.000 0.00 6.37 45.16 2.93
3152 3649 7.273164 CGAATATATGTTTTGAGCACTTGCAAA 59.727 33.333 0.00 0.00 45.16 3.68
3153 3650 6.746822 CGAATATATGTTTTGAGCACTTGCAA 59.253 34.615 3.62 0.00 45.16 4.08
3154 3651 6.128035 ACGAATATATGTTTTGAGCACTTGCA 60.128 34.615 3.62 0.00 45.16 4.08
3155 3652 6.258160 ACGAATATATGTTTTGAGCACTTGC 58.742 36.000 0.00 0.00 42.49 4.01
3156 3653 9.767684 TTAACGAATATATGTTTTGAGCACTTG 57.232 29.630 0.00 0.00 0.00 3.16
3209 3907 6.297694 GCTGAAATAAGCTAGGATGAACAG 57.702 41.667 0.00 0.00 40.20 3.16
3221 3919 9.840427 TGTTTATTAGTTCAAGCTGAAATAAGC 57.160 29.630 17.38 12.26 45.84 3.09
3226 3924 8.175069 CGCTATGTTTATTAGTTCAAGCTGAAA 58.825 33.333 0.00 0.00 38.22 2.69
3228 3926 6.816640 ACGCTATGTTTATTAGTTCAAGCTGA 59.183 34.615 0.00 0.00 0.00 4.26
3229 3927 7.005062 ACGCTATGTTTATTAGTTCAAGCTG 57.995 36.000 0.00 0.00 0.00 4.24
3230 3928 6.258068 GGACGCTATGTTTATTAGTTCAAGCT 59.742 38.462 0.00 0.00 0.00 3.74
3231 3929 6.419771 GGACGCTATGTTTATTAGTTCAAGC 58.580 40.000 0.00 0.00 0.00 4.01
3232 3930 6.018180 GGGGACGCTATGTTTATTAGTTCAAG 60.018 42.308 0.00 0.00 0.00 3.02
3233 3931 5.818857 GGGGACGCTATGTTTATTAGTTCAA 59.181 40.000 0.00 0.00 0.00 2.69
3234 3932 5.129815 AGGGGACGCTATGTTTATTAGTTCA 59.870 40.000 0.00 0.00 0.00 3.18
3235 3933 5.608449 AGGGGACGCTATGTTTATTAGTTC 58.392 41.667 0.00 0.00 0.00 3.01
3236 3934 5.625568 AGGGGACGCTATGTTTATTAGTT 57.374 39.130 0.00 0.00 0.00 2.24
3237 3935 5.279356 GCTAGGGGACGCTATGTTTATTAGT 60.279 44.000 0.00 0.00 0.00 2.24
3238 3936 5.169295 GCTAGGGGACGCTATGTTTATTAG 58.831 45.833 0.00 0.00 0.00 1.73
3239 3937 4.589798 TGCTAGGGGACGCTATGTTTATTA 59.410 41.667 0.00 0.00 0.00 0.98
3240 3938 3.389983 TGCTAGGGGACGCTATGTTTATT 59.610 43.478 0.00 0.00 0.00 1.40
3241 3939 2.969950 TGCTAGGGGACGCTATGTTTAT 59.030 45.455 0.00 0.00 0.00 1.40
3242 3940 2.390696 TGCTAGGGGACGCTATGTTTA 58.609 47.619 0.00 0.00 0.00 2.01
3243 3941 1.200519 TGCTAGGGGACGCTATGTTT 58.799 50.000 0.00 0.00 0.00 2.83
3244 3942 1.070758 CATGCTAGGGGACGCTATGTT 59.929 52.381 0.00 0.00 0.00 2.71
3245 3943 0.681733 CATGCTAGGGGACGCTATGT 59.318 55.000 0.00 0.00 0.00 2.29
3246 3944 0.969149 TCATGCTAGGGGACGCTATG 59.031 55.000 0.00 0.00 0.00 2.23
3247 3945 1.261480 CTCATGCTAGGGGACGCTAT 58.739 55.000 0.00 0.00 0.00 2.97
3248 3946 0.827925 CCTCATGCTAGGGGACGCTA 60.828 60.000 0.00 0.00 32.55 4.26
3249 3947 2.136878 CCTCATGCTAGGGGACGCT 61.137 63.158 0.00 0.00 32.55 5.07
3250 3948 1.113517 TACCTCATGCTAGGGGACGC 61.114 60.000 5.50 0.00 41.32 5.19
3251 3949 1.546476 GATACCTCATGCTAGGGGACG 59.454 57.143 5.50 0.00 41.32 4.79
3252 3950 1.903183 GGATACCTCATGCTAGGGGAC 59.097 57.143 5.50 0.00 41.32 4.46
3253 3951 1.795786 AGGATACCTCATGCTAGGGGA 59.204 52.381 5.50 0.00 41.32 4.81
3254 3952 1.905215 CAGGATACCTCATGCTAGGGG 59.095 57.143 5.50 0.00 41.32 4.79
3275 3973 1.902508 TCTTCCATTCGCTCTTCCACT 59.097 47.619 0.00 0.00 0.00 4.00
3277 3975 1.208052 CCTCTTCCATTCGCTCTTCCA 59.792 52.381 0.00 0.00 0.00 3.53
3278 3976 1.474143 CCCTCTTCCATTCGCTCTTCC 60.474 57.143 0.00 0.00 0.00 3.46
3279 3977 1.946745 CCCTCTTCCATTCGCTCTTC 58.053 55.000 0.00 0.00 0.00 2.87
3280 3978 0.107459 GCCCTCTTCCATTCGCTCTT 60.107 55.000 0.00 0.00 0.00 2.85
3281 3979 0.980231 AGCCCTCTTCCATTCGCTCT 60.980 55.000 0.00 0.00 0.00 4.09
3282 3980 0.531753 GAGCCCTCTTCCATTCGCTC 60.532 60.000 0.00 0.00 36.33 5.03
3283 3981 0.980231 AGAGCCCTCTTCCATTCGCT 60.980 55.000 0.00 0.00 36.31 4.93
3284 3982 0.813210 CAGAGCCCTCTTCCATTCGC 60.813 60.000 0.00 0.00 37.98 4.70
3285 3983 0.179062 CCAGAGCCCTCTTCCATTCG 60.179 60.000 0.00 0.00 37.98 3.34
3288 4269 1.919600 GCACCAGAGCCCTCTTCCAT 61.920 60.000 0.00 0.00 37.98 3.41
3291 4272 0.676151 CAAGCACCAGAGCCCTCTTC 60.676 60.000 0.00 0.00 37.98 2.87
3338 4319 2.358125 CGACAATGGTGCGGGTGA 60.358 61.111 0.00 0.00 0.00 4.02
3350 4331 2.621055 CCAAAGAAACCATGTCCGACAA 59.379 45.455 5.07 0.00 0.00 3.18
3381 4362 2.785562 GTGTGGCAGGTAACACCATTA 58.214 47.619 0.00 0.00 45.50 1.90
3382 4363 1.616159 GTGTGGCAGGTAACACCATT 58.384 50.000 0.00 0.00 45.50 3.16
3395 4376 3.431725 GCTAAGTGGCGGTGTGGC 61.432 66.667 0.00 0.00 45.12 5.01
3428 4413 2.048597 ACGCGCATCTTTCCGTCA 60.049 55.556 5.73 0.00 0.00 4.35
3429 4414 1.074319 TACACGCGCATCTTTCCGTC 61.074 55.000 5.73 0.00 0.00 4.79
3430 4415 0.459585 ATACACGCGCATCTTTCCGT 60.460 50.000 5.73 0.00 0.00 4.69
3433 4418 0.304705 CCCATACACGCGCATCTTTC 59.695 55.000 5.73 0.00 0.00 2.62
3434 4419 0.392461 ACCCATACACGCGCATCTTT 60.392 50.000 5.73 0.00 0.00 2.52
3436 4421 0.032130 CTACCCATACACGCGCATCT 59.968 55.000 5.73 0.00 0.00 2.90
3437 4422 0.944311 CCTACCCATACACGCGCATC 60.944 60.000 5.73 0.00 0.00 3.91
3438 4423 1.069090 CCTACCCATACACGCGCAT 59.931 57.895 5.73 0.00 0.00 4.73
3439 4424 2.497293 CCTACCCATACACGCGCA 59.503 61.111 5.73 0.00 0.00 6.09
3440 4425 2.965462 GCCTACCCATACACGCGC 60.965 66.667 5.73 0.00 0.00 6.86
3441 4426 1.069090 ATGCCTACCCATACACGCG 59.931 57.895 3.53 3.53 0.00 6.01
3443 4428 2.364324 ACTACATGCCTACCCATACACG 59.636 50.000 0.00 0.00 0.00 4.49
3444 4429 4.417426 AACTACATGCCTACCCATACAC 57.583 45.455 0.00 0.00 0.00 2.90
3511 4537 5.222316 TGGTAGGCCTTTAATGATATGGCAT 60.222 40.000 12.58 4.88 44.85 4.40
3514 4540 5.630121 TGTGGTAGGCCTTTAATGATATGG 58.370 41.667 12.58 0.00 35.27 2.74
3523 4549 1.906574 CCTGTCTGTGGTAGGCCTTTA 59.093 52.381 12.58 0.00 35.27 1.85
3529 4555 0.107508 CCATGCCTGTCTGTGGTAGG 60.108 60.000 0.00 0.00 34.67 3.18
3531 4557 0.546507 TCCCATGCCTGTCTGTGGTA 60.547 55.000 0.00 0.00 0.00 3.25
3535 4561 2.380064 TTTTTCCCATGCCTGTCTGT 57.620 45.000 0.00 0.00 0.00 3.41
3538 4564 9.643693 CAATAATATATTTTTCCCATGCCTGTC 57.356 33.333 2.68 0.00 0.00 3.51
3539 4565 9.378504 TCAATAATATATTTTTCCCATGCCTGT 57.621 29.630 2.68 0.00 0.00 4.00
3572 4598 2.031245 GTGACGTGGAATGTTTGCATGA 60.031 45.455 0.00 0.00 40.02 3.07
3575 4601 1.674359 AGTGACGTGGAATGTTTGCA 58.326 45.000 0.00 0.00 35.18 4.08
3589 4615 3.833442 TGATGATGTGACGTGTAGTGAC 58.167 45.455 0.00 0.00 37.48 3.67
3594 4620 3.993736 CACCTTTGATGATGTGACGTGTA 59.006 43.478 0.00 0.00 0.00 2.90
3598 4626 1.805943 TGCACCTTTGATGATGTGACG 59.194 47.619 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.