Multiple sequence alignment - TraesCS7D01G481400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G481400 chr7D 100.000 9530 0 0 1 9530 591779034 591788563 0.000000e+00 17599.0
1 TraesCS7D01G481400 chr7A 93.549 5829 273 46 252 6026 682880625 682886404 0.000000e+00 8586.0
2 TraesCS7D01G481400 chr7A 92.035 1494 59 25 7373 8833 682887888 682889354 0.000000e+00 2045.0
3 TraesCS7D01G481400 chr7A 94.807 982 40 5 6344 7323 682886916 682887888 0.000000e+00 1520.0
4 TraesCS7D01G481400 chr7A 85.549 519 47 13 8818 9313 682889385 682889898 1.420000e-142 518.0
5 TraesCS7D01G481400 chr7A 88.211 246 16 5 1 239 682879988 682880227 2.030000e-71 281.0
6 TraesCS7D01G481400 chr7A 87.654 81 5 5 30 106 682759625 682759704 1.320000e-13 89.8
7 TraesCS7D01G481400 chr7B 92.656 5338 280 38 346 5617 671719092 671713801 0.000000e+00 7583.0
8 TraesCS7D01G481400 chr7B 90.936 3332 189 56 6092 9352 671713668 671710379 0.000000e+00 4375.0
9 TraesCS7D01G481400 chr7B 94.198 293 11 2 57 349 671719517 671719231 8.780000e-120 442.0
10 TraesCS7D01G481400 chr7B 81.498 227 21 13 9029 9234 700575197 700575423 5.920000e-37 167.0
11 TraesCS7D01G481400 chr1B 84.975 1624 152 48 4294 5879 639045034 639046603 0.000000e+00 1563.0
12 TraesCS7D01G481400 chr1B 86.624 157 18 3 5906 6061 639052125 639052279 4.580000e-38 171.0
13 TraesCS7D01G481400 chr1D 87.500 1040 87 25 4294 5301 463866531 463867559 0.000000e+00 1160.0
14 TraesCS7D01G481400 chr1D 89.933 149 10 4 5914 6060 463875457 463875602 4.540000e-43 187.0
15 TraesCS7D01G481400 chr3A 81.924 1372 216 29 1840 3191 737670730 737672089 0.000000e+00 1131.0
16 TraesCS7D01G481400 chr3A 82.500 960 136 22 6381 7329 737674793 737675731 0.000000e+00 813.0
17 TraesCS7D01G481400 chr3A 79.090 813 120 31 4401 5181 737673222 737674016 1.840000e-141 514.0
18 TraesCS7D01G481400 chr3A 82.609 506 62 19 3362 3863 737672177 737672660 3.180000e-114 424.0
19 TraesCS7D01G481400 chr3A 81.481 324 42 14 3887 4198 737672722 737673039 5.710000e-62 250.0
20 TraesCS7D01G481400 chr1A 86.957 1035 100 25 4294 5304 555827870 555828893 0.000000e+00 1131.0
21 TraesCS7D01G481400 chr1A 83.276 580 60 17 5303 5879 555829025 555829570 5.140000e-137 499.0
22 TraesCS7D01G481400 chr3B 81.944 1368 215 26 1844 3191 815384450 815385805 0.000000e+00 1129.0
23 TraesCS7D01G481400 chr3B 79.141 815 124 29 4401 5181 815386964 815387766 1.100000e-143 521.0
24 TraesCS7D01G481400 chr3B 81.981 616 81 19 3254 3863 815385818 815386409 6.650000e-136 496.0
25 TraesCS7D01G481400 chr3B 82.132 319 45 12 3887 4200 815386470 815386781 7.340000e-66 263.0
26 TraesCS7D01G481400 chr3D 81.885 1369 215 29 1843 3191 606372105 606370750 0.000000e+00 1123.0
27 TraesCS7D01G481400 chr3D 80.194 1136 173 38 6381 7489 606367998 606366888 0.000000e+00 804.0
28 TraesCS7D01G481400 chr3D 81.759 614 82 19 3254 3861 606370737 606370148 4.000000e-133 486.0
29 TraesCS7D01G481400 chr3D 80.222 632 87 23 4360 4973 606369662 606369051 3.160000e-119 440.0
30 TraesCS7D01G481400 chr5A 83.333 138 17 4 9087 9218 328029228 328029365 1.300000e-23 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G481400 chr7D 591779034 591788563 9529 False 17599.000000 17599 100.000000 1 9530 1 chr7D.!!$F1 9529
1 TraesCS7D01G481400 chr7A 682879988 682889898 9910 False 2590.000000 8586 90.830200 1 9313 5 chr7A.!!$F2 9312
2 TraesCS7D01G481400 chr7B 671710379 671719517 9138 True 4133.333333 7583 92.596667 57 9352 3 chr7B.!!$R1 9295
3 TraesCS7D01G481400 chr1B 639045034 639046603 1569 False 1563.000000 1563 84.975000 4294 5879 1 chr1B.!!$F1 1585
4 TraesCS7D01G481400 chr1D 463866531 463867559 1028 False 1160.000000 1160 87.500000 4294 5301 1 chr1D.!!$F1 1007
5 TraesCS7D01G481400 chr3A 737670730 737675731 5001 False 626.400000 1131 81.520800 1840 7329 5 chr3A.!!$F1 5489
6 TraesCS7D01G481400 chr1A 555827870 555829570 1700 False 815.000000 1131 85.116500 4294 5879 2 chr1A.!!$F1 1585
7 TraesCS7D01G481400 chr3B 815384450 815387766 3316 False 602.250000 1129 81.299500 1844 5181 4 chr3B.!!$F1 3337
8 TraesCS7D01G481400 chr3D 606366888 606372105 5217 True 713.250000 1123 81.015000 1843 7489 4 chr3D.!!$R1 5646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 1004 0.462937 TGCATATCGTTTCCACCGGG 60.463 55.000 6.32 0.0 0.00 5.73 F
1044 1613 0.035056 ATCCTGTCTTCAAAGGGGCG 60.035 55.000 0.00 0.0 34.08 6.13 F
1417 2015 1.570857 TTCCCAGGGAATCGCATGGT 61.571 55.000 18.05 0.0 36.71 3.55 F
2262 2860 1.338769 CGGTCCAGGTTAAAGAGGTGG 60.339 57.143 0.00 0.0 0.00 4.61 F
4004 4662 1.485124 AGCTACCGTGGTGATGATGA 58.515 50.000 0.72 0.0 0.00 2.92 F
4182 4848 0.322816 GCATGTTCTCTTGCCTCCCA 60.323 55.000 0.00 0.0 38.33 4.37 F
5055 5855 0.035152 CTTACCAGGCAGCACCATCA 60.035 55.000 0.00 0.0 43.14 3.07 F
5243 6071 0.107066 CTATGCTGCCACATCACCCA 60.107 55.000 0.00 0.0 0.00 4.51 F
7069 8461 0.474660 ACTGAAGGAAGTGAGCCCCT 60.475 55.000 0.00 0.0 0.00 4.79 F
7813 9270 0.615331 AGGTCGCCATCATTCACTGT 59.385 50.000 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 2454 1.202348 GAACCATTTTTGAGGGCGGAG 59.798 52.381 0.00 0.00 30.38 4.63 R
2035 2633 2.972021 TCCAGTTCCACAGTCTTGATCA 59.028 45.455 0.00 0.00 0.00 2.92 R
3397 4015 3.612860 CGATTTCCTTCACGGAGTAACTG 59.387 47.826 0.00 0.00 44.28 3.16 R
4166 4832 1.661463 ATCTGGGAGGCAAGAGAACA 58.339 50.000 0.00 0.00 0.00 3.18 R
4978 5707 1.280998 GGAGCTAAGGTAAAGTGCCCA 59.719 52.381 0.00 0.00 0.00 5.36 R
6036 7002 0.111061 AGAGGTGCATTCCACAAGCA 59.889 50.000 0.00 0.00 46.50 3.91 R
6037 7003 0.807496 GAGAGGTGCATTCCACAAGC 59.193 55.000 0.00 0.00 46.50 4.01 R
7088 8480 0.181587 TTGCCGAGTCCCAAGTGAAA 59.818 50.000 0.00 0.00 0.00 2.69 R
8388 9857 0.883153 TGCCAATGCAGCTGTGTTAG 59.117 50.000 16.64 5.04 44.23 2.34 R
9470 11046 0.043940 AAGCAGGTGAGAGGGAGGAT 59.956 55.000 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.509463 CCTAGGTTGCGCTCGTGTA 59.491 57.895 9.73 0.00 0.00 2.90
98 99 4.527157 GCGCCGCAGCTGTCATTC 62.527 66.667 16.64 0.00 36.60 2.67
99 100 3.869272 CGCCGCAGCTGTCATTCC 61.869 66.667 16.64 0.00 36.60 3.01
100 101 3.512516 GCCGCAGCTGTCATTCCC 61.513 66.667 16.64 0.00 35.50 3.97
101 102 2.046023 CCGCAGCTGTCATTCCCA 60.046 61.111 16.64 0.00 0.00 4.37
102 103 2.401766 CCGCAGCTGTCATTCCCAC 61.402 63.158 16.64 0.00 0.00 4.61
256 649 3.994392 CCCGTGTATACCTGCATAATGTC 59.006 47.826 0.00 0.00 0.00 3.06
344 879 2.814336 GTGGACCTTCAGGATTCACAAC 59.186 50.000 0.00 0.00 38.94 3.32
351 886 5.014123 ACCTTCAGGATTCACAACAAGGATA 59.986 40.000 0.00 0.00 38.94 2.59
358 893 5.762218 GGATTCACAACAAGGATATCCAGAG 59.238 44.000 23.81 14.35 38.89 3.35
458 1004 0.462937 TGCATATCGTTTCCACCGGG 60.463 55.000 6.32 0.00 0.00 5.73
482 1028 0.608035 GTGGGCGGTTTCAGATTGGA 60.608 55.000 0.00 0.00 0.00 3.53
517 1063 4.777366 TGAATACCAGAGATGTGTCCAGAA 59.223 41.667 0.00 0.00 0.00 3.02
581 1127 9.601217 TTAGCTAGTGATTGGAAATCTTAAGAC 57.399 33.333 7.48 0.00 0.00 3.01
583 1129 6.018669 GCTAGTGATTGGAAATCTTAAGACGG 60.019 42.308 7.48 0.00 0.00 4.79
686 1239 8.298854 CAAGATGTTTGACATTGGATCTGTTTA 58.701 33.333 0.00 0.00 39.27 2.01
695 1248 9.391006 TGACATTGGATCTGTTTAGTAATTACC 57.609 33.333 12.05 0.00 0.00 2.85
700 1253 9.575868 TTGGATCTGTTTAGTAATTACCAAACA 57.424 29.630 28.60 28.60 42.49 2.83
751 1320 1.037579 GCTGCCCCTGTTATGGGTTC 61.038 60.000 0.00 0.00 45.70 3.62
826 1395 4.873827 TCGGGTTTTTGCTAGCTAAGTATG 59.126 41.667 17.23 5.29 0.00 2.39
828 1397 5.813672 CGGGTTTTTGCTAGCTAAGTATGTA 59.186 40.000 17.23 0.00 0.00 2.29
836 1405 7.215719 TGCTAGCTAAGTATGTAGTATGTGG 57.784 40.000 17.23 0.00 0.00 4.17
966 1535 5.518487 CCTTCTCTTCTCTATCGAAGCAAAC 59.482 44.000 0.00 0.00 40.11 2.93
1044 1613 0.035056 ATCCTGTCTTCAAAGGGGCG 60.035 55.000 0.00 0.00 34.08 6.13
1084 1653 6.041409 TCCTTCAATTGCTAATTTTGTCACCA 59.959 34.615 0.00 0.00 0.00 4.17
1087 1656 7.475771 TCAATTGCTAATTTTGTCACCAAAC 57.524 32.000 0.00 0.00 40.19 2.93
1287 1884 4.482386 GCATGATGCTGCAATTGGTATAG 58.518 43.478 10.72 0.00 40.96 1.31
1394 1992 1.748493 TCGAAAAGTTGCAGGCTGTTT 59.252 42.857 17.16 8.05 0.00 2.83
1411 2009 2.084546 GTTTCTGTTCCCAGGGAATCG 58.915 52.381 24.69 17.25 44.04 3.34
1417 2015 1.570857 TTCCCAGGGAATCGCATGGT 61.571 55.000 18.05 0.00 36.71 3.55
1437 2035 7.063780 GCATGGTAAATTTTTCACAGGAGATTG 59.936 37.037 0.00 0.00 0.00 2.67
1479 2077 4.409247 ACTCTACCCTTTCTGAACTGTGTT 59.591 41.667 0.00 0.00 0.00 3.32
1570 2168 9.995003 AACAATGCAACTAATTTCATTCCTAAA 57.005 25.926 0.00 0.00 0.00 1.85
1936 2534 4.946784 CCAGTCAGGTTTGCTATTACAC 57.053 45.455 0.00 0.00 0.00 2.90
1959 2557 4.750021 TCAATCTCTCATGCTAGTTGCT 57.250 40.909 0.00 0.00 43.37 3.91
2262 2860 1.338769 CGGTCCAGGTTAAAGAGGTGG 60.339 57.143 0.00 0.00 0.00 4.61
2320 2922 5.107375 GCTTGTATTTTGTCACTGCCATTTG 60.107 40.000 0.00 0.00 0.00 2.32
2362 2964 2.032681 GCCGTGTTGCTCTTCCCT 59.967 61.111 0.00 0.00 0.00 4.20
2795 3409 8.790718 CAGGAAACATATCATAGGGAATTTCAG 58.209 37.037 0.00 0.00 0.00 3.02
2844 3459 7.936847 CCTAAATCTGTGGTTAGGTTGCATATA 59.063 37.037 0.00 0.00 40.98 0.86
3166 3781 2.222027 AGAGTTTCTGGTTCAAAGGCG 58.778 47.619 0.00 0.00 0.00 5.52
3252 3868 6.264744 CCCAGAGATATTAAGTTAGACACGGA 59.735 42.308 0.00 0.00 0.00 4.69
3337 3954 9.716556 TTTGGTTAGGCCCAGATTAATAATTTA 57.283 29.630 0.00 0.00 35.49 1.40
3338 3955 8.934023 TGGTTAGGCCCAGATTAATAATTTAG 57.066 34.615 0.00 0.00 36.04 1.85
3397 4015 5.399892 GTGCTCGTATTCTCACTTATGTAGC 59.600 44.000 0.00 0.00 0.00 3.58
3555 4173 4.215613 GGAAAAGTTGCAGGTTAGAATCGT 59.784 41.667 0.00 0.00 0.00 3.73
3671 4289 2.042831 CCTTCTGAAGCGCCAAGGG 61.043 63.158 11.93 0.00 33.04 3.95
3824 4443 6.036083 CACATACTTCGCAGTTATAGCTGTTT 59.964 38.462 16.77 1.85 38.65 2.83
4004 4662 1.485124 AGCTACCGTGGTGATGATGA 58.515 50.000 0.72 0.00 0.00 2.92
4101 4759 8.736751 TTGAGTGTAAGTTTCTGAAACAAAAC 57.263 30.769 28.99 22.87 43.79 2.43
4109 4767 6.712549 AGTTTCTGAAACAAAACTAGCGTAC 58.287 36.000 28.99 3.93 42.37 3.67
4150 4816 9.857957 GTACTAGATAGATTACTGGTTAATGGC 57.142 37.037 0.00 0.00 29.85 4.40
4182 4848 0.322816 GCATGTTCTCTTGCCTCCCA 60.323 55.000 0.00 0.00 38.33 4.37
4220 4908 5.981174 TGAGATTCATGACAGCAATCACTA 58.019 37.500 0.00 0.00 0.00 2.74
4322 5011 6.342111 TGTTGTGGTAAGTGCGAATATATCA 58.658 36.000 0.00 0.00 0.00 2.15
4331 5020 5.793817 AGTGCGAATATATCAAGCATACCA 58.206 37.500 11.25 0.00 40.11 3.25
4426 5118 7.188468 GCTCTCAAGCTGGAGAATAATTAAG 57.812 40.000 21.36 8.59 45.55 1.85
4488 5186 1.849039 AGCCACTTCCCTTGCTCATAT 59.151 47.619 0.00 0.00 0.00 1.78
4554 5253 4.090761 TCAACTTTGTCTGAGGCTGAAT 57.909 40.909 0.00 0.00 0.00 2.57
4740 5454 8.523915 TGCCAAATGTATCATTTTACTCTGAT 57.476 30.769 5.17 0.00 36.19 2.90
4977 5706 3.002038 TGGCATTGTGCTCATGATGTA 57.998 42.857 0.00 0.00 44.28 2.29
4978 5707 3.558033 TGGCATTGTGCTCATGATGTAT 58.442 40.909 0.00 0.00 44.28 2.29
4979 5708 3.316868 TGGCATTGTGCTCATGATGTATG 59.683 43.478 0.00 0.00 44.28 2.39
5055 5855 0.035152 CTTACCAGGCAGCACCATCA 60.035 55.000 0.00 0.00 43.14 3.07
5243 6071 0.107066 CTATGCTGCCACATCACCCA 60.107 55.000 0.00 0.00 0.00 4.51
5454 6418 3.056393 CCAAAAATAACCCCTTCCCGAAC 60.056 47.826 0.00 0.00 0.00 3.95
5473 6437 4.336280 GAACCTTTAGCCAAATCTGACCT 58.664 43.478 0.00 0.00 0.00 3.85
5593 6558 2.358737 GCTGGGACGGTTGACCTG 60.359 66.667 0.00 0.00 36.83 4.00
5702 6667 0.726827 ACATGTAAATGCTCCGTGCG 59.273 50.000 0.00 0.00 46.63 5.34
5739 6704 1.561542 CCTTCCACTAATGCAGTCCCT 59.438 52.381 0.00 0.00 34.26 4.20
5801 6766 3.125829 CGGTGGAGACATGTGAAAATCAG 59.874 47.826 1.15 0.00 46.14 2.90
5858 6824 8.669946 TCTGTCAAAAATACACTGTAACATGA 57.330 30.769 0.00 0.00 0.00 3.07
5908 6874 9.974980 AAATTTAATTTAATTCCACACACGAGT 57.025 25.926 0.54 0.00 0.00 4.18
5913 6879 7.915293 ATTTAATTCCACACACGAGTTATGA 57.085 32.000 0.00 0.00 0.00 2.15
5949 6915 5.066375 CAGCATCGATTTCAGTAATTTCCCA 59.934 40.000 0.00 0.00 0.00 4.37
5954 6920 9.023967 CATCGATTTCAGTAATTTCCCATTTTC 57.976 33.333 0.00 0.00 0.00 2.29
5956 6922 8.026607 TCGATTTCAGTAATTTCCCATTTTCAC 58.973 33.333 0.00 0.00 0.00 3.18
6026 6992 9.323985 CCCAAGTGAAATTAAATTTGAAACTGA 57.676 29.630 0.00 0.00 31.47 3.41
6061 7027 1.067295 TGGAATGCACCTCTCCAACT 58.933 50.000 6.26 0.00 36.30 3.16
6076 7042 1.942657 CCAACTCACTGTGTCCAAGTG 59.057 52.381 7.79 0.00 35.10 3.16
6078 7044 3.270027 CAACTCACTGTGTCCAAGTGAA 58.730 45.455 7.79 0.00 41.29 3.18
6079 7045 3.627395 ACTCACTGTGTCCAAGTGAAA 57.373 42.857 7.79 0.00 41.29 2.69
6082 7048 5.680619 ACTCACTGTGTCCAAGTGAAATTA 58.319 37.500 7.79 0.00 41.29 1.40
6083 7049 6.299141 ACTCACTGTGTCCAAGTGAAATTAT 58.701 36.000 7.79 0.00 41.29 1.28
6085 7051 6.969366 TCACTGTGTCCAAGTGAAATTATTG 58.031 36.000 7.79 0.00 39.29 1.90
6086 7052 6.770303 TCACTGTGTCCAAGTGAAATTATTGA 59.230 34.615 7.79 0.00 39.29 2.57
6088 7054 7.592533 CACTGTGTCCAAGTGAAATTATTGAAG 59.407 37.037 0.00 0.00 35.75 3.02
6090 7056 7.874940 TGTGTCCAAGTGAAATTATTGAAGAG 58.125 34.615 0.00 0.00 0.00 2.85
6144 7501 2.358615 TGTGCACGACTGGCATCC 60.359 61.111 13.13 0.00 44.11 3.51
6202 7562 4.211389 CAGCACGTCATAAAAGTTCACAC 58.789 43.478 0.00 0.00 0.00 3.82
6594 7983 7.928103 TCTCTTAGACGGTTATCATTCACTAC 58.072 38.462 0.00 0.00 0.00 2.73
6595 7984 7.555195 TCTCTTAGACGGTTATCATTCACTACA 59.445 37.037 0.00 0.00 0.00 2.74
6647 8036 9.598517 TTGAATTAATATTTTCTGTGGCATTCC 57.401 29.630 0.00 0.00 0.00 3.01
6662 8051 3.627237 GGCATTCCTTGGGGTAATGAAGA 60.627 47.826 0.00 0.00 34.79 2.87
6779 8168 9.447157 GCAGGCTAGAGAGATATTCAATTTTAT 57.553 33.333 0.00 0.00 0.00 1.40
6873 8262 4.875544 ACATGTGGACACAAATATACGC 57.124 40.909 9.42 0.00 45.41 4.42
7069 8461 0.474660 ACTGAAGGAAGTGAGCCCCT 60.475 55.000 0.00 0.00 0.00 4.79
7082 8474 4.079253 GTGAGCCCCTATTTTTCACAAGA 58.921 43.478 0.00 0.00 38.36 3.02
7088 8480 6.498303 AGCCCCTATTTTTCACAAGATTCTTT 59.502 34.615 0.00 0.00 0.00 2.52
7103 8495 4.757149 AGATTCTTTTTCACTTGGGACTCG 59.243 41.667 0.00 0.00 0.00 4.18
7182 8575 9.447040 GTGTTAACTTCAAAAACTAACCTCATC 57.553 33.333 7.22 0.00 0.00 2.92
7254 8650 5.510520 GGCTGTCTATAGTGAAGAATGGAGG 60.511 48.000 0.00 0.00 0.00 4.30
7300 8697 7.174080 AGACTTCTGTAGCTTTTGATTTCCTTC 59.826 37.037 0.00 0.00 0.00 3.46
7324 8721 6.441924 TCTGAACCTCCTAAATTGTCTCTCAT 59.558 38.462 0.00 0.00 0.00 2.90
7384 8807 5.366768 AGGTGAGCTTGGCTGTATATTTCTA 59.633 40.000 0.00 0.00 39.88 2.10
7389 8812 5.823045 AGCTTGGCTGTATATTTCTACCAAC 59.177 40.000 0.00 0.00 37.57 3.77
7548 9004 7.290061 AGATGCCAGGATAAAAATGCTACTAA 58.710 34.615 0.00 0.00 0.00 2.24
7579 9035 9.199982 AGATGTAAATTTTGAGCATTTGTTGAG 57.800 29.630 0.00 0.00 0.00 3.02
7580 9036 7.176285 TGTAAATTTTGAGCATTTGTTGAGC 57.824 32.000 0.00 0.00 0.00 4.26
7583 9039 4.389890 TTTTGAGCATTTGTTGAGCACT 57.610 36.364 0.00 0.00 0.00 4.40
7640 9097 2.867624 CATTACCAGGTGGCATATGCT 58.132 47.619 26.12 8.05 41.70 3.79
7721 9178 2.353889 GACATCATCATCACACACTGGC 59.646 50.000 0.00 0.00 0.00 4.85
7813 9270 0.615331 AGGTCGCCATCATTCACTGT 59.385 50.000 0.00 0.00 0.00 3.55
7814 9271 0.729116 GGTCGCCATCATTCACTGTG 59.271 55.000 0.17 0.17 0.00 3.66
7851 9308 2.233676 GAGAACCCAAATGCCCGAAATT 59.766 45.455 0.00 0.00 0.00 1.82
7982 9439 1.226717 GTTCGAGCAGCCTAGACCG 60.227 63.158 0.00 0.00 0.00 4.79
8012 9469 6.608405 TGATACCGAAGTCAAGGAAAGGTATA 59.392 38.462 4.47 0.00 41.77 1.47
8013 9470 5.340439 ACCGAAGTCAAGGAAAGGTATAG 57.660 43.478 0.00 0.00 0.00 1.31
8056 9513 9.855021 GAATACATTTTACTACCTTGCAAACAT 57.145 29.630 0.00 0.00 0.00 2.71
8059 9516 8.404107 ACATTTTACTACCTTGCAAACATAGT 57.596 30.769 16.70 16.70 0.00 2.12
8060 9517 8.856103 ACATTTTACTACCTTGCAAACATAGTT 58.144 29.630 17.37 6.81 0.00 2.24
8061 9518 9.341899 CATTTTACTACCTTGCAAACATAGTTC 57.658 33.333 17.37 0.00 0.00 3.01
8136 9599 1.830477 ACCAACCTGAAGCAAGCAAAA 59.170 42.857 0.00 0.00 0.00 2.44
8176 9639 2.490270 AATGAGACCACCCCTGCTGC 62.490 60.000 0.00 0.00 0.00 5.25
8303 9766 3.309436 TTCCACCGATCCTGCCACG 62.309 63.158 0.00 0.00 0.00 4.94
8346 9809 4.557695 GCGAGGTATCCTACTGTTCTCATG 60.558 50.000 0.00 0.00 31.76 3.07
8347 9810 4.822350 CGAGGTATCCTACTGTTCTCATGA 59.178 45.833 0.00 0.00 31.76 3.07
8349 9812 4.580995 AGGTATCCTACTGTTCTCATGACG 59.419 45.833 0.00 0.00 28.47 4.35
8377 9846 1.996798 TCTAAGCCTCCTCCATACCG 58.003 55.000 0.00 0.00 0.00 4.02
8388 9857 2.361438 CCTCCATACCGGACAGTCTAAC 59.639 54.545 9.46 0.00 39.64 2.34
8535 10004 3.308323 CGCTCCAGCTGTTCTAAAATCTC 59.692 47.826 13.81 0.00 39.32 2.75
8538 10007 5.395768 GCTCCAGCTGTTCTAAAATCTCCTA 60.396 44.000 13.81 0.00 38.21 2.94
8565 10043 4.445453 TGCTGTATCTGCTTAGTGAATGG 58.555 43.478 0.00 0.00 0.00 3.16
8569 10047 4.401202 TGTATCTGCTTAGTGAATGGACGA 59.599 41.667 0.00 0.00 0.00 4.20
8570 10048 4.679373 ATCTGCTTAGTGAATGGACGAT 57.321 40.909 0.00 0.00 0.00 3.73
8579 10057 3.319405 AGTGAATGGACGATAGCGAGATT 59.681 43.478 7.69 1.49 41.64 2.40
8580 10058 3.426859 GTGAATGGACGATAGCGAGATTG 59.573 47.826 7.69 0.00 41.64 2.67
8581 10059 2.732412 ATGGACGATAGCGAGATTGG 57.268 50.000 7.69 0.00 41.64 3.16
8583 10061 1.754803 TGGACGATAGCGAGATTGGTT 59.245 47.619 7.69 0.00 41.64 3.67
8584 10062 2.167693 TGGACGATAGCGAGATTGGTTT 59.832 45.455 7.69 0.00 41.64 3.27
8585 10063 2.795470 GGACGATAGCGAGATTGGTTTC 59.205 50.000 7.69 0.00 41.64 2.78
8607 10090 0.655733 AAGGTAAATCGCATTCGCCG 59.344 50.000 0.00 0.00 35.26 6.46
8644 10127 4.692625 GTCTGTTGCACTCACTGATATGTT 59.307 41.667 0.00 0.00 0.00 2.71
8646 10129 4.002982 TGTTGCACTCACTGATATGTTCC 58.997 43.478 0.00 0.00 0.00 3.62
8657 10140 4.402793 ACTGATATGTTCCGAGTTACTGCT 59.597 41.667 0.00 0.00 0.00 4.24
8658 10141 5.105310 ACTGATATGTTCCGAGTTACTGCTT 60.105 40.000 0.00 0.00 0.00 3.91
8660 10143 1.508632 TGTTCCGAGTTACTGCTTGC 58.491 50.000 0.00 0.00 0.00 4.01
8661 10144 1.202592 TGTTCCGAGTTACTGCTTGCA 60.203 47.619 0.00 0.00 0.00 4.08
8697 10194 3.891366 CCCTCTTGAAACCTGACATTTGT 59.109 43.478 0.00 0.00 0.00 2.83
8731 10228 2.417719 GTGAACTAGCAGGTGTTCTGG 58.582 52.381 12.90 0.00 43.54 3.86
8803 10309 4.818314 GGAGGGTGTCCTGAGGAT 57.182 61.111 3.65 0.00 45.05 3.24
8888 10442 3.070748 GAGCCCTTCTGTCAGAAAACTC 58.929 50.000 15.97 16.60 33.19 3.01
8994 10549 4.634199 CTCATTCCCTGTGCAATTTTGTT 58.366 39.130 0.00 0.00 0.00 2.83
9037 10592 1.693467 TTCGGAAATGTCTGACGTCG 58.307 50.000 11.62 6.07 38.95 5.12
9039 10594 1.683790 CGGAAATGTCTGACGTCGGC 61.684 60.000 19.89 14.62 30.94 5.54
9053 10608 2.289195 ACGTCGGCTTTTTAGACATGGA 60.289 45.455 0.00 0.00 34.80 3.41
9060 10615 5.572896 CGGCTTTTTAGACATGGAAAATCAC 59.427 40.000 0.00 0.00 0.00 3.06
9080 10635 6.998968 TCACAAGTTTTTCATGGCAATTTT 57.001 29.167 0.00 0.00 0.00 1.82
9106 10674 5.216648 GGCAAATTTAGTTTACAAGCACGA 58.783 37.500 0.00 0.00 0.00 4.35
9124 10692 4.550639 GCACGACAATTTTCTGGCAAAAAG 60.551 41.667 11.31 1.73 32.04 2.27
9126 10694 5.290643 CACGACAATTTTCTGGCAAAAAGAA 59.709 36.000 11.31 0.00 32.04 2.52
9127 10695 6.018832 CACGACAATTTTCTGGCAAAAAGAAT 60.019 34.615 11.31 0.00 33.79 2.40
9128 10696 6.018832 ACGACAATTTTCTGGCAAAAAGAATG 60.019 34.615 11.31 11.50 33.79 2.67
9130 10698 7.254387 CGACAATTTTCTGGCAAAAAGAATGAA 60.254 33.333 11.31 0.00 33.79 2.57
9137 10711 6.829849 TCTGGCAAAAAGAATGAAGGATTTT 58.170 32.000 0.00 0.00 0.00 1.82
9153 10727 3.426695 GGATTTTCCATGCTCGTCAACTG 60.427 47.826 0.00 0.00 36.28 3.16
9170 10744 2.508526 ACTGAACTTGCCATCCTCAAC 58.491 47.619 0.00 0.00 0.00 3.18
9173 10747 2.151202 GAACTTGCCATCCTCAACGAA 58.849 47.619 0.00 0.00 0.00 3.85
9184 10758 1.400142 CCTCAACGAACACAACTTGCA 59.600 47.619 0.00 0.00 0.00 4.08
9196 10771 4.326009 ACACAACTTGCAATGAAAACGTTC 59.674 37.500 0.00 0.00 0.00 3.95
9203 10778 4.355437 TGCAATGAAAACGTTCGATTTGT 58.645 34.783 0.00 0.00 36.46 2.83
9207 10782 6.304445 GCAATGAAAACGTTCGATTTGTCATA 59.696 34.615 0.00 0.00 36.46 2.15
9221 10796 9.098355 TCGATTTGTCATACCTAAAAATCTGAG 57.902 33.333 0.00 0.00 35.87 3.35
9226 10802 8.918202 TGTCATACCTAAAAATCTGAGTTTGT 57.082 30.769 3.65 1.14 0.00 2.83
9239 10815 4.943705 TCTGAGTTTGTTGGATATTCAGGC 59.056 41.667 0.00 0.00 33.28 4.85
9241 10817 3.016736 AGTTTGTTGGATATTCAGGCCG 58.983 45.455 0.00 0.00 0.00 6.13
9242 10818 2.752903 GTTTGTTGGATATTCAGGCCGT 59.247 45.455 0.00 0.00 0.00 5.68
9243 10819 2.799126 TGTTGGATATTCAGGCCGTT 57.201 45.000 0.00 0.00 0.00 4.44
9256 10832 1.002087 AGGCCGTTCTTTCGATTGACT 59.998 47.619 0.00 0.00 0.00 3.41
9332 10908 1.464734 TCTCCGATCAAACTCTCGCT 58.535 50.000 0.00 0.00 33.63 4.93
9333 10909 1.133216 TCTCCGATCAAACTCTCGCTG 59.867 52.381 0.00 0.00 33.63 5.18
9338 10914 1.996191 GATCAAACTCTCGCTGTCCAC 59.004 52.381 0.00 0.00 0.00 4.02
9344 10920 1.620819 ACTCTCGCTGTCCACAGAAAT 59.379 47.619 11.04 0.00 46.59 2.17
9348 10924 4.832248 TCTCGCTGTCCACAGAAATAAAT 58.168 39.130 11.04 0.00 46.59 1.40
9351 10927 6.876789 TCTCGCTGTCCACAGAAATAAATAAA 59.123 34.615 11.04 0.00 46.59 1.40
9352 10928 7.552687 TCTCGCTGTCCACAGAAATAAATAAAT 59.447 33.333 11.04 0.00 46.59 1.40
9353 10929 8.725405 TCGCTGTCCACAGAAATAAATAAATA 57.275 30.769 11.04 0.00 46.59 1.40
9354 10930 9.168451 TCGCTGTCCACAGAAATAAATAAATAA 57.832 29.630 11.04 0.00 46.59 1.40
9355 10931 9.781834 CGCTGTCCACAGAAATAAATAAATAAA 57.218 29.630 11.04 0.00 46.59 1.40
9377 10953 7.804614 AAATAAATAAAACAAAGATGCGCGA 57.195 28.000 12.10 0.00 0.00 5.87
9378 10954 7.804614 AATAAATAAAACAAAGATGCGCGAA 57.195 28.000 12.10 0.00 0.00 4.70
9379 10955 7.985634 ATAAATAAAACAAAGATGCGCGAAT 57.014 28.000 12.10 3.76 0.00 3.34
9380 10956 5.685195 AATAAAACAAAGATGCGCGAATG 57.315 34.783 12.10 0.00 0.00 2.67
9381 10957 1.339711 AAACAAAGATGCGCGAATGC 58.660 45.000 12.10 0.00 37.91 3.56
9382 10958 0.523072 AACAAAGATGCGCGAATGCT 59.477 45.000 12.10 1.06 39.65 3.79
9383 10959 0.179181 ACAAAGATGCGCGAATGCTG 60.179 50.000 12.10 3.99 39.65 4.41
9384 10960 0.864377 CAAAGATGCGCGAATGCTGG 60.864 55.000 12.10 0.00 39.65 4.85
9385 10961 1.308069 AAAGATGCGCGAATGCTGGT 61.308 50.000 12.10 0.00 39.65 4.00
9386 10962 1.308069 AAGATGCGCGAATGCTGGTT 61.308 50.000 12.10 0.00 39.65 3.67
9387 10963 1.137404 GATGCGCGAATGCTGGTTT 59.863 52.632 12.10 0.00 39.65 3.27
9388 10964 0.863119 GATGCGCGAATGCTGGTTTC 60.863 55.000 12.10 0.00 39.65 2.78
9389 10965 1.308069 ATGCGCGAATGCTGGTTTCT 61.308 50.000 12.10 0.00 39.65 2.52
9390 10966 1.512734 GCGCGAATGCTGGTTTCTG 60.513 57.895 12.10 0.00 39.65 3.02
9391 10967 1.911293 GCGCGAATGCTGGTTTCTGA 61.911 55.000 12.10 0.00 39.65 3.27
9392 10968 0.095935 CGCGAATGCTGGTTTCTGAG 59.904 55.000 0.00 0.00 39.65 3.35
9393 10969 1.442769 GCGAATGCTGGTTTCTGAGA 58.557 50.000 0.00 0.00 38.39 3.27
9394 10970 1.129437 GCGAATGCTGGTTTCTGAGAC 59.871 52.381 0.00 0.00 38.39 3.36
9395 10971 1.734465 CGAATGCTGGTTTCTGAGACC 59.266 52.381 10.29 10.29 37.69 3.85
9396 10972 2.087646 GAATGCTGGTTTCTGAGACCC 58.912 52.381 14.16 1.38 36.30 4.46
9397 10973 1.366319 ATGCTGGTTTCTGAGACCCT 58.634 50.000 14.16 0.00 36.30 4.34
9398 10974 0.687354 TGCTGGTTTCTGAGACCCTC 59.313 55.000 14.16 6.90 36.30 4.30
9399 10975 0.980423 GCTGGTTTCTGAGACCCTCT 59.020 55.000 14.16 0.00 36.30 3.69
9400 10976 1.338579 GCTGGTTTCTGAGACCCTCTG 60.339 57.143 14.16 4.24 36.30 3.35
9401 10977 1.277557 CTGGTTTCTGAGACCCTCTGG 59.722 57.143 14.16 0.00 36.30 3.86
9402 10978 1.132849 TGGTTTCTGAGACCCTCTGGA 60.133 52.381 14.16 0.00 36.30 3.86
9403 10979 1.552792 GGTTTCTGAGACCCTCTGGAG 59.447 57.143 6.10 0.00 34.81 3.86
9404 10980 2.252714 GTTTCTGAGACCCTCTGGAGT 58.747 52.381 0.00 0.00 34.81 3.85
9405 10981 3.432378 GTTTCTGAGACCCTCTGGAGTA 58.568 50.000 0.00 0.00 34.81 2.59
9406 10982 2.810870 TCTGAGACCCTCTGGAGTAC 57.189 55.000 0.00 0.00 34.81 2.73
9407 10983 1.993301 TCTGAGACCCTCTGGAGTACA 59.007 52.381 0.00 0.00 34.81 2.90
9408 10984 2.096248 CTGAGACCCTCTGGAGTACAC 58.904 57.143 0.00 0.00 34.81 2.90
9409 10985 1.711375 TGAGACCCTCTGGAGTACACT 59.289 52.381 0.00 0.00 34.81 3.55
9410 10986 2.110188 TGAGACCCTCTGGAGTACACTT 59.890 50.000 0.00 0.00 34.81 3.16
9411 10987 3.166679 GAGACCCTCTGGAGTACACTTT 58.833 50.000 0.00 0.00 34.81 2.66
9412 10988 4.202641 TGAGACCCTCTGGAGTACACTTTA 60.203 45.833 0.00 0.00 34.81 1.85
9413 10989 4.748701 AGACCCTCTGGAGTACACTTTAA 58.251 43.478 0.00 0.00 34.81 1.52
9414 10990 4.527427 AGACCCTCTGGAGTACACTTTAAC 59.473 45.833 0.00 0.00 34.81 2.01
9415 10991 4.228824 ACCCTCTGGAGTACACTTTAACA 58.771 43.478 0.00 0.00 34.81 2.41
9416 10992 4.040095 ACCCTCTGGAGTACACTTTAACAC 59.960 45.833 0.00 0.00 34.81 3.32
9417 10993 4.235360 CCTCTGGAGTACACTTTAACACG 58.765 47.826 0.00 0.00 0.00 4.49
9418 10994 4.261909 CCTCTGGAGTACACTTTAACACGT 60.262 45.833 0.00 0.00 0.00 4.49
9419 10995 5.266733 TCTGGAGTACACTTTAACACGTT 57.733 39.130 0.00 0.00 0.00 3.99
9420 10996 5.284079 TCTGGAGTACACTTTAACACGTTC 58.716 41.667 0.00 0.00 0.00 3.95
9421 10997 5.008619 TGGAGTACACTTTAACACGTTCA 57.991 39.130 0.00 0.00 0.00 3.18
9422 10998 5.603596 TGGAGTACACTTTAACACGTTCAT 58.396 37.500 0.00 0.00 0.00 2.57
9423 10999 6.747125 TGGAGTACACTTTAACACGTTCATA 58.253 36.000 0.00 0.00 0.00 2.15
9424 11000 7.208777 TGGAGTACACTTTAACACGTTCATAA 58.791 34.615 0.00 0.00 0.00 1.90
9425 11001 7.710044 TGGAGTACACTTTAACACGTTCATAAA 59.290 33.333 0.00 0.00 0.00 1.40
9426 11002 8.550376 GGAGTACACTTTAACACGTTCATAAAA 58.450 33.333 0.00 0.00 0.00 1.52
9427 11003 9.361712 GAGTACACTTTAACACGTTCATAAAAC 57.638 33.333 0.00 0.00 0.00 2.43
9428 11004 8.881743 AGTACACTTTAACACGTTCATAAAACA 58.118 29.630 0.00 0.00 0.00 2.83
9429 11005 7.958112 ACACTTTAACACGTTCATAAAACAC 57.042 32.000 0.00 0.00 0.00 3.32
9430 11006 7.754625 ACACTTTAACACGTTCATAAAACACT 58.245 30.769 0.00 0.00 0.00 3.55
9431 11007 8.881743 ACACTTTAACACGTTCATAAAACACTA 58.118 29.630 0.00 0.00 0.00 2.74
9432 11008 9.872757 CACTTTAACACGTTCATAAAACACTAT 57.127 29.630 0.00 0.00 0.00 2.12
9438 11014 7.075741 ACACGTTCATAAAACACTATTTCTGC 58.924 34.615 0.00 0.00 0.00 4.26
9439 11015 7.075121 CACGTTCATAAAACACTATTTCTGCA 58.925 34.615 0.00 0.00 0.00 4.41
9440 11016 7.589587 CACGTTCATAAAACACTATTTCTGCAA 59.410 33.333 0.00 0.00 0.00 4.08
9441 11017 7.803189 ACGTTCATAAAACACTATTTCTGCAAG 59.197 33.333 0.00 0.00 0.00 4.01
9442 11018 7.803189 CGTTCATAAAACACTATTTCTGCAAGT 59.197 33.333 0.00 0.00 33.76 3.16
9443 11019 9.118236 GTTCATAAAACACTATTTCTGCAAGTC 57.882 33.333 0.00 0.00 33.76 3.01
9444 11020 8.621532 TCATAAAACACTATTTCTGCAAGTCT 57.378 30.769 0.00 0.00 33.76 3.24
9445 11021 8.506437 TCATAAAACACTATTTCTGCAAGTCTG 58.494 33.333 0.00 0.00 33.76 3.51
9460 11036 5.523369 GCAAGTCTGCTGAAATTTACTTGT 58.477 37.500 21.57 0.00 45.74 3.16
9461 11037 5.626955 GCAAGTCTGCTGAAATTTACTTGTC 59.373 40.000 21.57 14.28 45.74 3.18
9462 11038 6.728200 CAAGTCTGCTGAAATTTACTTGTCA 58.272 36.000 16.14 0.00 39.15 3.58
9463 11039 6.551385 AGTCTGCTGAAATTTACTTGTCAG 57.449 37.500 0.00 0.00 40.40 3.51
9464 11040 5.471456 AGTCTGCTGAAATTTACTTGTCAGG 59.529 40.000 0.00 0.00 38.34 3.86
9465 11041 4.216257 TCTGCTGAAATTTACTTGTCAGGC 59.784 41.667 5.06 0.00 38.34 4.85
9466 11042 3.058293 TGCTGAAATTTACTTGTCAGGCG 60.058 43.478 5.06 0.00 38.34 5.52
9467 11043 3.670627 GCTGAAATTTACTTGTCAGGCGG 60.671 47.826 5.06 0.00 38.34 6.13
9468 11044 3.482436 TGAAATTTACTTGTCAGGCGGT 58.518 40.909 0.00 0.00 0.00 5.68
9469 11045 3.886505 TGAAATTTACTTGTCAGGCGGTT 59.113 39.130 0.00 0.00 0.00 4.44
9470 11046 5.064558 TGAAATTTACTTGTCAGGCGGTTA 58.935 37.500 0.00 0.00 0.00 2.85
9471 11047 5.708230 TGAAATTTACTTGTCAGGCGGTTAT 59.292 36.000 0.00 0.00 0.00 1.89
9472 11048 5.813080 AATTTACTTGTCAGGCGGTTATC 57.187 39.130 0.00 0.00 0.00 1.75
9473 11049 2.973694 TACTTGTCAGGCGGTTATCC 57.026 50.000 0.00 0.00 0.00 2.59
9474 11050 1.276622 ACTTGTCAGGCGGTTATCCT 58.723 50.000 0.00 0.00 0.00 3.24
9475 11051 1.207329 ACTTGTCAGGCGGTTATCCTC 59.793 52.381 0.00 0.00 0.00 3.71
9476 11052 0.539986 TTGTCAGGCGGTTATCCTCC 59.460 55.000 0.00 0.00 38.79 4.30
9477 11053 1.335132 TGTCAGGCGGTTATCCTCCC 61.335 60.000 0.00 0.00 39.28 4.30
9478 11054 1.049289 GTCAGGCGGTTATCCTCCCT 61.049 60.000 0.00 0.00 39.28 4.20
9479 11055 0.759436 TCAGGCGGTTATCCTCCCTC 60.759 60.000 0.00 0.00 39.28 4.30
9480 11056 0.760945 CAGGCGGTTATCCTCCCTCT 60.761 60.000 0.00 0.00 39.28 3.69
9481 11057 0.470268 AGGCGGTTATCCTCCCTCTC 60.470 60.000 0.00 0.00 39.28 3.20
9482 11058 0.759436 GGCGGTTATCCTCCCTCTCA 60.759 60.000 0.00 0.00 32.76 3.27
9483 11059 0.389757 GCGGTTATCCTCCCTCTCAC 59.610 60.000 0.00 0.00 0.00 3.51
9484 11060 1.041437 CGGTTATCCTCCCTCTCACC 58.959 60.000 0.00 0.00 0.00 4.02
9485 11061 1.411787 CGGTTATCCTCCCTCTCACCT 60.412 57.143 0.00 0.00 0.00 4.00
9486 11062 2.043227 GGTTATCCTCCCTCTCACCTG 58.957 57.143 0.00 0.00 0.00 4.00
9487 11063 1.414550 GTTATCCTCCCTCTCACCTGC 59.585 57.143 0.00 0.00 0.00 4.85
9488 11064 0.937441 TATCCTCCCTCTCACCTGCT 59.063 55.000 0.00 0.00 0.00 4.24
9489 11065 0.043940 ATCCTCCCTCTCACCTGCTT 59.956 55.000 0.00 0.00 0.00 3.91
9490 11066 0.616111 TCCTCCCTCTCACCTGCTTC 60.616 60.000 0.00 0.00 0.00 3.86
9491 11067 0.617249 CCTCCCTCTCACCTGCTTCT 60.617 60.000 0.00 0.00 0.00 2.85
9492 11068 1.342474 CCTCCCTCTCACCTGCTTCTA 60.342 57.143 0.00 0.00 0.00 2.10
9493 11069 1.754226 CTCCCTCTCACCTGCTTCTAC 59.246 57.143 0.00 0.00 0.00 2.59
9494 11070 1.359474 TCCCTCTCACCTGCTTCTACT 59.641 52.381 0.00 0.00 0.00 2.57
9495 11071 2.183679 CCCTCTCACCTGCTTCTACTT 58.816 52.381 0.00 0.00 0.00 2.24
9496 11072 2.167487 CCCTCTCACCTGCTTCTACTTC 59.833 54.545 0.00 0.00 0.00 3.01
9497 11073 2.828520 CCTCTCACCTGCTTCTACTTCA 59.171 50.000 0.00 0.00 0.00 3.02
9498 11074 3.367910 CCTCTCACCTGCTTCTACTTCAC 60.368 52.174 0.00 0.00 0.00 3.18
9499 11075 2.563179 TCTCACCTGCTTCTACTTCACC 59.437 50.000 0.00 0.00 0.00 4.02
9500 11076 2.564947 CTCACCTGCTTCTACTTCACCT 59.435 50.000 0.00 0.00 0.00 4.00
9501 11077 2.300152 TCACCTGCTTCTACTTCACCTG 59.700 50.000 0.00 0.00 0.00 4.00
9502 11078 2.037772 CACCTGCTTCTACTTCACCTGT 59.962 50.000 0.00 0.00 0.00 4.00
9503 11079 2.300437 ACCTGCTTCTACTTCACCTGTC 59.700 50.000 0.00 0.00 0.00 3.51
9504 11080 2.564947 CCTGCTTCTACTTCACCTGTCT 59.435 50.000 0.00 0.00 0.00 3.41
9505 11081 3.367910 CCTGCTTCTACTTCACCTGTCTC 60.368 52.174 0.00 0.00 0.00 3.36
9506 11082 3.501349 TGCTTCTACTTCACCTGTCTCT 58.499 45.455 0.00 0.00 0.00 3.10
9507 11083 3.256879 TGCTTCTACTTCACCTGTCTCTG 59.743 47.826 0.00 0.00 0.00 3.35
9508 11084 3.257127 GCTTCTACTTCACCTGTCTCTGT 59.743 47.826 0.00 0.00 0.00 3.41
9509 11085 4.262249 GCTTCTACTTCACCTGTCTCTGTT 60.262 45.833 0.00 0.00 0.00 3.16
9510 11086 5.455056 TTCTACTTCACCTGTCTCTGTTC 57.545 43.478 0.00 0.00 0.00 3.18
9511 11087 4.730966 TCTACTTCACCTGTCTCTGTTCT 58.269 43.478 0.00 0.00 0.00 3.01
9512 11088 4.762765 TCTACTTCACCTGTCTCTGTTCTC 59.237 45.833 0.00 0.00 0.00 2.87
9513 11089 3.571590 ACTTCACCTGTCTCTGTTCTCT 58.428 45.455 0.00 0.00 0.00 3.10
9514 11090 3.572255 ACTTCACCTGTCTCTGTTCTCTC 59.428 47.826 0.00 0.00 0.00 3.20
9515 11091 3.229697 TCACCTGTCTCTGTTCTCTCA 57.770 47.619 0.00 0.00 0.00 3.27
9516 11092 3.566351 TCACCTGTCTCTGTTCTCTCAA 58.434 45.455 0.00 0.00 0.00 3.02
9517 11093 4.155709 TCACCTGTCTCTGTTCTCTCAAT 58.844 43.478 0.00 0.00 0.00 2.57
9518 11094 5.325239 TCACCTGTCTCTGTTCTCTCAATA 58.675 41.667 0.00 0.00 0.00 1.90
9519 11095 5.954752 TCACCTGTCTCTGTTCTCTCAATAT 59.045 40.000 0.00 0.00 0.00 1.28
9520 11096 6.438741 TCACCTGTCTCTGTTCTCTCAATATT 59.561 38.462 0.00 0.00 0.00 1.28
9521 11097 7.038729 TCACCTGTCTCTGTTCTCTCAATATTT 60.039 37.037 0.00 0.00 0.00 1.40
9522 11098 7.605691 CACCTGTCTCTGTTCTCTCAATATTTT 59.394 37.037 0.00 0.00 0.00 1.82
9523 11099 7.821846 ACCTGTCTCTGTTCTCTCAATATTTTC 59.178 37.037 0.00 0.00 0.00 2.29
9524 11100 8.040132 CCTGTCTCTGTTCTCTCAATATTTTCT 58.960 37.037 0.00 0.00 0.00 2.52
9525 11101 8.994429 TGTCTCTGTTCTCTCAATATTTTCTC 57.006 34.615 0.00 0.00 0.00 2.87
9526 11102 8.037758 TGTCTCTGTTCTCTCAATATTTTCTCC 58.962 37.037 0.00 0.00 0.00 3.71
9527 11103 7.494298 GTCTCTGTTCTCTCAATATTTTCTCCC 59.506 40.741 0.00 0.00 0.00 4.30
9528 11104 7.401493 TCTCTGTTCTCTCAATATTTTCTCCCT 59.599 37.037 0.00 0.00 0.00 4.20
9529 11105 7.334090 TCTGTTCTCTCAATATTTTCTCCCTG 58.666 38.462 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.653636 GAGGAGAGAGCGTACACGAG 59.346 60.000 5.84 0.00 43.02 4.18
88 89 0.842030 TGGGAGTGGGAATGACAGCT 60.842 55.000 0.00 0.00 0.00 4.24
97 98 2.224159 GCTTGGAGTGGGAGTGGGA 61.224 63.158 0.00 0.00 0.00 4.37
98 99 2.352805 GCTTGGAGTGGGAGTGGG 59.647 66.667 0.00 0.00 0.00 4.61
99 100 2.046892 CGCTTGGAGTGGGAGTGG 60.047 66.667 0.00 0.00 0.00 4.00
100 101 2.046892 CCGCTTGGAGTGGGAGTG 60.047 66.667 0.00 0.00 42.09 3.51
256 649 7.479603 CGAAGTCAAATCAAACATCATACACTG 59.520 37.037 0.00 0.00 0.00 3.66
344 879 2.902486 TGCTAGGCTCTGGATATCCTTG 59.098 50.000 22.35 14.71 36.82 3.61
351 886 1.871418 TGAAGTGCTAGGCTCTGGAT 58.129 50.000 0.00 0.00 32.56 3.41
358 893 4.675408 GCCTAAACAATTGAAGTGCTAGGC 60.675 45.833 22.22 22.22 40.85 3.93
458 1004 4.589675 TGAAACCGCCCACACCCC 62.590 66.667 0.00 0.00 0.00 4.95
482 1028 4.513442 TCTGGTATTCAATAAAGCTGCGT 58.487 39.130 0.00 0.00 0.00 5.24
517 1063 7.038729 TGAGACAATAAAGACAAGATCTGGAGT 60.039 37.037 3.42 0.00 37.88 3.85
579 1125 5.798434 GCAATGACCAGTTAAATTAACCGTC 59.202 40.000 18.93 18.93 39.47 4.79
581 1127 5.704888 TGCAATGACCAGTTAAATTAACCG 58.295 37.500 11.83 2.41 39.47 4.44
583 1129 9.423061 AGATTTGCAATGACCAGTTAAATTAAC 57.577 29.630 7.75 7.75 38.94 2.01
646 1199 7.174253 GTCAAACATCTTGGAGTATACACCAAA 59.826 37.037 27.77 20.53 44.00 3.28
703 1256 8.593679 TCCAGAAGACTTATTTTGATACAGTCA 58.406 33.333 0.00 0.00 37.02 3.41
751 1320 0.099613 ACTGAGAGCAGCACGATACG 59.900 55.000 0.00 0.00 46.26 3.06
804 1373 4.634443 ACATACTTAGCTAGCAAAAACCCG 59.366 41.667 18.83 1.27 0.00 5.28
826 1395 9.517609 CAGTACAGATTACTTTCCACATACTAC 57.482 37.037 0.00 0.00 0.00 2.73
828 1397 8.135382 ACAGTACAGATTACTTTCCACATACT 57.865 34.615 0.00 0.00 0.00 2.12
867 1436 9.087424 GTGAAAGCTTTACAAAAATCTTGAACT 57.913 29.630 12.68 0.00 32.74 3.01
881 1450 5.801947 CCATATGCAACAGTGAAAGCTTTAC 59.198 40.000 12.68 10.65 0.00 2.01
937 1506 2.738135 GATAGAGAAGAGAAGGCGTGC 58.262 52.381 0.00 0.00 0.00 5.34
966 1535 2.724977 TTGACTAGTCTTGAGTGGCG 57.275 50.000 23.01 0.00 0.00 5.69
1188 1784 7.907841 TGTGTAGTGGACCTATGTGTAATAT 57.092 36.000 0.00 0.00 0.00 1.28
1191 1787 6.614694 AATGTGTAGTGGACCTATGTGTAA 57.385 37.500 0.00 0.00 0.00 2.41
1204 1800 5.649395 ACTTCCATCCATCAAATGTGTAGTG 59.351 40.000 0.00 0.00 0.00 2.74
1205 1801 5.819991 ACTTCCATCCATCAAATGTGTAGT 58.180 37.500 0.00 0.00 0.00 2.73
1411 2009 6.024552 TCTCCTGTGAAAAATTTACCATGC 57.975 37.500 0.00 0.00 0.00 4.06
1473 2071 4.067896 AGAACTTAGGCACATCAACACAG 58.932 43.478 0.00 0.00 0.00 3.66
1479 2077 4.558226 ATCACAGAACTTAGGCACATCA 57.442 40.909 0.00 0.00 0.00 3.07
1520 2118 7.881775 TGACAAACATATAGAGCTCTAGACA 57.118 36.000 26.64 15.48 0.00 3.41
1570 2168 7.884877 TCAGTGAGGTTGAGATCAAATACAATT 59.115 33.333 0.00 0.00 37.63 2.32
1729 2327 2.289631 TGGCATATCTCCAATACGCTGG 60.290 50.000 0.00 0.00 37.87 4.85
1856 2454 1.202348 GAACCATTTTTGAGGGCGGAG 59.798 52.381 0.00 0.00 30.38 4.63
1936 2534 5.406767 GCAACTAGCATGAGAGATTGAAG 57.593 43.478 0.00 0.00 44.79 3.02
2035 2633 2.972021 TCCAGTTCCACAGTCTTGATCA 59.028 45.455 0.00 0.00 0.00 2.92
2362 2964 3.754323 CCGTGCAAAAGGAACCTGTTATA 59.246 43.478 0.00 0.00 0.00 0.98
2795 3409 6.651225 AGGAGTGCATTTACTGTAGAAAGAAC 59.349 38.462 0.00 0.00 0.00 3.01
2900 3515 3.973305 ACAATCCAAGGGAAATGTTTGGT 59.027 39.130 2.77 0.00 41.61 3.67
3397 4015 3.612860 CGATTTCCTTCACGGAGTAACTG 59.387 47.826 0.00 0.00 44.28 3.16
3671 4289 3.158676 TGCCACACCCCTAACATTAAAC 58.841 45.455 0.00 0.00 0.00 2.01
3824 4443 5.301551 ACCACAGTTCAACAAGCAATAATGA 59.698 36.000 0.00 0.00 0.00 2.57
4004 4662 6.407074 CCAAGTACCGATAAGACAATTCTCCT 60.407 42.308 0.00 0.00 0.00 3.69
4057 4715 8.076178 ACACTCAAAAGATAGCACATGTTAAAC 58.924 33.333 0.00 0.00 0.00 2.01
4101 4759 7.239166 ACATTTTCATGATCTTGTACGCTAG 57.761 36.000 8.33 0.00 34.11 3.42
4166 4832 1.661463 ATCTGGGAGGCAAGAGAACA 58.339 50.000 0.00 0.00 0.00 3.18
4182 4848 8.319881 TCATGAATCTCAGAGAGAAACAAATCT 58.680 33.333 6.24 0.00 42.27 2.40
4284 4972 5.200368 ACCACAACAAAAGGCATCTTTAG 57.800 39.130 0.00 0.00 41.92 1.85
4488 5186 7.148255 CCTCGAATTTTAGTGAATCAACCATCA 60.148 37.037 0.00 0.00 0.00 3.07
4740 5454 9.634021 TTTCACAATGTAAGGGTGCATATATTA 57.366 29.630 0.00 0.00 32.69 0.98
4977 5706 2.092375 GGAGCTAAGGTAAAGTGCCCAT 60.092 50.000 0.00 0.00 0.00 4.00
4978 5707 1.280998 GGAGCTAAGGTAAAGTGCCCA 59.719 52.381 0.00 0.00 0.00 5.36
4979 5708 1.560146 AGGAGCTAAGGTAAAGTGCCC 59.440 52.381 0.00 0.00 0.00 5.36
5332 6294 7.732025 TGGTTCAGATTCTTGTAGTGACTAAA 58.268 34.615 0.00 0.00 0.00 1.85
5454 6418 5.728637 AAAAGGTCAGATTTGGCTAAAGG 57.271 39.130 0.65 0.00 0.00 3.11
5473 6437 3.408634 GTGGCTAGCACTGACCTAAAAA 58.591 45.455 18.24 0.00 0.00 1.94
5501 6466 2.167398 TAGGGTTGTGCTGCCTCGAC 62.167 60.000 0.00 0.53 0.00 4.20
5503 6468 1.448540 CTAGGGTTGTGCTGCCTCG 60.449 63.158 0.00 0.00 0.00 4.63
5593 6558 2.787680 CGCTGAACTTATACACGTAGGC 59.212 50.000 0.00 0.00 0.00 3.93
5823 6788 9.573133 AGTGTATTTTTGACAGAACTTTTGAAG 57.427 29.630 0.00 0.00 0.00 3.02
5892 6858 7.731882 TTTTCATAACTCGTGTGTGGAATTA 57.268 32.000 0.00 0.00 0.00 1.40
5921 6887 7.377928 GGAAATTACTGAAATCGATGCTGATTG 59.622 37.037 0.00 0.00 38.54 2.67
5923 6889 6.016777 GGGAAATTACTGAAATCGATGCTGAT 60.017 38.462 0.00 0.00 0.00 2.90
5924 6890 5.296780 GGGAAATTACTGAAATCGATGCTGA 59.703 40.000 0.00 0.00 0.00 4.26
5932 6898 9.657419 ATGTGAAAATGGGAAATTACTGAAATC 57.343 29.630 0.00 0.00 0.00 2.17
5992 6958 7.961326 ATTTAATTTCACTTGGGAGCTATGT 57.039 32.000 0.00 0.00 0.00 2.29
6026 6992 4.990426 GCATTCCACAAGCATGTAAACTTT 59.010 37.500 0.00 0.00 37.82 2.66
6027 6993 4.039004 TGCATTCCACAAGCATGTAAACTT 59.961 37.500 0.00 0.00 37.82 2.66
6028 6994 3.573538 TGCATTCCACAAGCATGTAAACT 59.426 39.130 0.00 0.00 37.82 2.66
6030 6996 3.305950 GGTGCATTCCACAAGCATGTAAA 60.306 43.478 0.00 0.00 46.50 2.01
6031 6997 2.230992 GGTGCATTCCACAAGCATGTAA 59.769 45.455 0.00 0.00 46.50 2.41
6033 6999 0.604578 GGTGCATTCCACAAGCATGT 59.395 50.000 0.00 0.00 46.50 3.21
6036 7002 0.111061 AGAGGTGCATTCCACAAGCA 59.889 50.000 0.00 0.00 46.50 3.91
6037 7003 0.807496 GAGAGGTGCATTCCACAAGC 59.193 55.000 0.00 0.00 46.50 4.01
6061 7027 6.770303 TCAATAATTTCACTTGGACACAGTGA 59.230 34.615 7.81 10.92 40.32 3.41
6162 7519 4.507756 GTGCTGTAGAATTGTGCATATCGA 59.492 41.667 0.00 0.00 36.04 3.59
6163 7520 4.606894 CGTGCTGTAGAATTGTGCATATCG 60.607 45.833 0.00 0.00 36.04 2.92
6164 7521 4.271049 ACGTGCTGTAGAATTGTGCATATC 59.729 41.667 0.00 0.00 36.04 1.63
6165 7522 4.191544 ACGTGCTGTAGAATTGTGCATAT 58.808 39.130 0.00 0.00 36.04 1.78
6166 7523 3.595173 ACGTGCTGTAGAATTGTGCATA 58.405 40.909 0.00 0.00 36.04 3.14
6167 7524 2.416547 GACGTGCTGTAGAATTGTGCAT 59.583 45.455 0.00 0.00 36.04 3.96
6168 7525 1.798223 GACGTGCTGTAGAATTGTGCA 59.202 47.619 0.00 0.00 0.00 4.57
6169 7526 1.798223 TGACGTGCTGTAGAATTGTGC 59.202 47.619 0.00 0.00 0.00 4.57
6170 7527 5.778161 TTATGACGTGCTGTAGAATTGTG 57.222 39.130 0.00 0.00 0.00 3.33
6171 7528 6.426937 ACTTTTATGACGTGCTGTAGAATTGT 59.573 34.615 0.00 0.00 0.00 2.71
6329 7703 7.310671 GGTGTTATGATATTGATAGAGCAGGGA 60.311 40.741 0.00 0.00 0.00 4.20
6594 7983 9.490379 AAGGAGAAAACAAGTAAGTACAGTATG 57.510 33.333 0.00 0.00 46.00 2.39
6645 8034 2.576191 CACCTCTTCATTACCCCAAGGA 59.424 50.000 0.00 0.00 36.73 3.36
6647 8036 2.025887 AGCACCTCTTCATTACCCCAAG 60.026 50.000 0.00 0.00 0.00 3.61
6726 8115 6.828785 ACATCAGTAGACCACCATTAATTTCC 59.171 38.462 0.00 0.00 0.00 3.13
6779 8168 5.306160 TCCTCTGTCATCATATCATCTTGCA 59.694 40.000 0.00 0.00 0.00 4.08
6831 8220 6.134535 TGTTGTCCAACCCATATAAAGACT 57.865 37.500 7.64 0.00 40.46 3.24
6938 8327 6.295039 TCCAGCGTAAACTAAAACAAGAAG 57.705 37.500 0.00 0.00 0.00 2.85
6971 8363 6.484364 AGAAATTTCTGGCAGAAAAGGAAA 57.516 33.333 37.69 20.58 46.08 3.13
7082 8474 3.821033 CCGAGTCCCAAGTGAAAAAGAAT 59.179 43.478 0.00 0.00 0.00 2.40
7088 8480 0.181587 TTGCCGAGTCCCAAGTGAAA 59.818 50.000 0.00 0.00 0.00 2.69
7103 8495 3.515330 ATGCTTACAGCTGATTTTGCC 57.485 42.857 23.35 2.27 42.97 4.52
7155 8547 8.338072 TGAGGTTAGTTTTTGAAGTTAACACA 57.662 30.769 8.61 4.95 0.00 3.72
7160 8552 8.974060 ACAGATGAGGTTAGTTTTTGAAGTTA 57.026 30.769 0.00 0.00 0.00 2.24
7200 8596 6.124340 TCAAATGAGTTACCATGCATCTGAT 58.876 36.000 0.00 0.00 0.00 2.90
7300 8697 6.042638 TGAGAGACAATTTAGGAGGTTCAG 57.957 41.667 0.00 0.00 0.00 3.02
7324 8721 5.372343 TCTAATAAAGCAGGAATGCAGGA 57.628 39.130 2.73 0.00 37.25 3.86
7384 8807 4.523943 TGAAGAATGCTGCAATAAGTTGGT 59.476 37.500 6.36 0.00 35.83 3.67
7389 8812 5.898174 TCCAATGAAGAATGCTGCAATAAG 58.102 37.500 6.36 0.00 32.07 1.73
7548 9004 9.146984 CAAATGCTCAAAATTTACATCTGATGT 57.853 29.630 25.01 25.01 46.92 3.06
7579 9035 8.654215 CATATGTTCATACATGATACAGAGTGC 58.346 37.037 0.00 0.00 44.56 4.40
7580 9036 9.918630 TCATATGTTCATACATGATACAGAGTG 57.081 33.333 0.00 9.38 44.56 3.51
7640 9097 9.965824 CAAAAGTTAAGCTTTATGAGAAGGAAA 57.034 29.630 3.20 0.00 45.91 3.13
7721 9178 5.824624 AGGTTTATCAGGTACAATGCATCTG 59.175 40.000 0.00 2.49 0.00 2.90
7982 9439 5.263968 TCCTTGACTTCGGTATCAGATTC 57.736 43.478 0.00 0.00 0.00 2.52
8012 9469 4.762289 ATTCCTTTCCGAGAATGCTACT 57.238 40.909 0.00 0.00 31.56 2.57
8013 9470 5.357257 TGTATTCCTTTCCGAGAATGCTAC 58.643 41.667 0.00 0.00 36.44 3.58
8058 9515 9.123709 CGATAAGTTCATAGCAGATAAGAGAAC 57.876 37.037 0.00 0.00 35.40 3.01
8059 9516 8.851145 ACGATAAGTTCATAGCAGATAAGAGAA 58.149 33.333 0.00 0.00 0.00 2.87
8060 9517 8.397575 ACGATAAGTTCATAGCAGATAAGAGA 57.602 34.615 0.00 0.00 0.00 3.10
8061 9518 8.910666 CAACGATAAGTTCATAGCAGATAAGAG 58.089 37.037 0.00 0.00 42.02 2.85
8136 9599 1.251251 GCATTTGCCTCTGGTTCAGT 58.749 50.000 0.00 0.00 31.87 3.41
8159 9622 3.640407 GCAGCAGGGGTGGTCTCA 61.640 66.667 0.00 0.00 0.00 3.27
8176 9639 1.043116 TACAGTCTGCCCATCCTCCG 61.043 60.000 0.00 0.00 0.00 4.63
8257 9720 2.628178 CTCAGGCGATCATAAGGGTACA 59.372 50.000 0.00 0.00 0.00 2.90
8303 9766 2.024590 GCCTGGCTTGATCAATGGCC 62.025 60.000 24.81 24.81 44.31 5.36
8346 9809 3.516615 GAGGCTTAGATGATATGGCGTC 58.483 50.000 0.00 0.00 0.00 5.19
8347 9810 2.234908 GGAGGCTTAGATGATATGGCGT 59.765 50.000 0.00 0.00 0.00 5.68
8349 9812 3.118445 GGAGGAGGCTTAGATGATATGGC 60.118 52.174 0.00 0.00 0.00 4.40
8377 9846 4.238514 CAGCTGTGTTAGTTAGACTGTCC 58.761 47.826 5.25 0.00 0.00 4.02
8388 9857 0.883153 TGCCAATGCAGCTGTGTTAG 59.117 50.000 16.64 5.04 44.23 2.34
8535 10004 1.411977 AGCAGATACAGCAGCAGTAGG 59.588 52.381 3.81 0.00 0.00 3.18
8538 10007 2.499289 ACTAAGCAGATACAGCAGCAGT 59.501 45.455 0.00 0.00 0.00 4.40
8565 10043 2.795470 GGAAACCAATCTCGCTATCGTC 59.205 50.000 0.00 0.00 36.96 4.20
8569 10047 3.947834 CCTTTGGAAACCAATCTCGCTAT 59.052 43.478 4.03 0.00 43.55 2.97
8570 10048 3.244770 ACCTTTGGAAACCAATCTCGCTA 60.245 43.478 4.03 0.00 43.55 4.26
8579 10057 3.223435 TGCGATTTACCTTTGGAAACCA 58.777 40.909 0.00 0.00 0.00 3.67
8580 10058 3.926821 TGCGATTTACCTTTGGAAACC 57.073 42.857 0.00 0.00 0.00 3.27
8581 10059 4.557301 CGAATGCGATTTACCTTTGGAAAC 59.443 41.667 0.00 0.00 40.82 2.78
8583 10061 3.426963 GCGAATGCGATTTACCTTTGGAA 60.427 43.478 0.00 0.00 40.82 3.53
8584 10062 2.096819 GCGAATGCGATTTACCTTTGGA 59.903 45.455 0.00 0.00 40.82 3.53
8585 10063 2.450160 GCGAATGCGATTTACCTTTGG 58.550 47.619 0.00 0.00 40.82 3.28
8607 10090 1.748122 CAGACCCTGATGTGCCTGC 60.748 63.158 0.00 0.00 32.44 4.85
8621 10104 4.248859 ACATATCAGTGAGTGCAACAGAC 58.751 43.478 0.00 0.00 41.43 3.51
8644 10127 2.248280 TTTGCAAGCAGTAACTCGGA 57.752 45.000 0.00 0.00 0.00 4.55
8646 10129 3.811722 TGATTTGCAAGCAGTAACTCG 57.188 42.857 0.00 0.00 0.00 4.18
8657 10140 3.515104 GAGGGGAAAGGATTGATTTGCAA 59.485 43.478 0.00 0.00 41.53 4.08
8658 10141 3.099141 GAGGGGAAAGGATTGATTTGCA 58.901 45.455 0.00 0.00 30.37 4.08
8660 10143 5.018809 TCAAGAGGGGAAAGGATTGATTTG 58.981 41.667 0.00 0.00 0.00 2.32
8661 10144 5.275263 TCAAGAGGGGAAAGGATTGATTT 57.725 39.130 0.00 0.00 0.00 2.17
8731 10228 6.932356 TTCCTTTCTATCTTCATGCATCAC 57.068 37.500 0.00 0.00 0.00 3.06
8888 10442 2.675075 ACCATTTTCCACCGCCCG 60.675 61.111 0.00 0.00 0.00 6.13
8914 10469 7.204496 ACAGCCAACGTTTTACATAAATACA 57.796 32.000 0.00 0.00 0.00 2.29
8917 10472 6.508777 ACAACAGCCAACGTTTTACATAAAT 58.491 32.000 0.00 0.00 0.00 1.40
8918 10473 5.892568 ACAACAGCCAACGTTTTACATAAA 58.107 33.333 0.00 0.00 0.00 1.40
8994 10549 8.958119 AAAGAATAGGCATTGTAAGTTCGATA 57.042 30.769 0.00 0.00 0.00 2.92
9037 10592 6.454795 TGTGATTTTCCATGTCTAAAAAGCC 58.545 36.000 0.00 0.00 29.61 4.35
9039 10594 9.533253 AACTTGTGATTTTCCATGTCTAAAAAG 57.467 29.630 0.00 0.00 0.00 2.27
9053 10608 6.998968 TTGCCATGAAAAACTTGTGATTTT 57.001 29.167 0.00 0.00 32.14 1.82
9080 10635 6.019479 CGTGCTTGTAAACTAAATTTGCCAAA 60.019 34.615 0.00 0.00 32.27 3.28
9082 10637 4.979197 CGTGCTTGTAAACTAAATTTGCCA 59.021 37.500 0.00 0.00 32.27 4.92
9083 10638 5.116528 GTCGTGCTTGTAAACTAAATTTGCC 59.883 40.000 0.00 0.00 32.27 4.52
9084 10639 5.683743 TGTCGTGCTTGTAAACTAAATTTGC 59.316 36.000 0.00 0.00 33.77 3.68
9106 10674 7.012610 CCTTCATTCTTTTTGCCAGAAAATTGT 59.987 33.333 0.00 0.00 33.94 2.71
9124 10692 4.096984 ACGAGCATGGAAAATCCTTCATTC 59.903 41.667 0.00 0.00 37.46 2.67
9126 10694 3.624777 ACGAGCATGGAAAATCCTTCAT 58.375 40.909 0.00 0.00 37.46 2.57
9127 10695 3.009723 GACGAGCATGGAAAATCCTTCA 58.990 45.455 0.00 0.00 37.46 3.02
9128 10696 3.009723 TGACGAGCATGGAAAATCCTTC 58.990 45.455 0.00 0.00 37.46 3.46
9130 10698 2.749621 GTTGACGAGCATGGAAAATCCT 59.250 45.455 0.00 0.00 37.46 3.24
9137 10711 1.344438 AGTTCAGTTGACGAGCATGGA 59.656 47.619 0.00 0.00 0.00 3.41
9153 10727 1.808411 TCGTTGAGGATGGCAAGTTC 58.192 50.000 0.00 0.00 0.00 3.01
9170 10744 4.546081 CGTTTTCATTGCAAGTTGTGTTCG 60.546 41.667 4.94 0.00 0.00 3.95
9173 10747 3.843999 ACGTTTTCATTGCAAGTTGTGT 58.156 36.364 4.94 0.00 0.00 3.72
9184 10758 6.799925 GGTATGACAAATCGAACGTTTTCATT 59.200 34.615 0.46 0.00 0.00 2.57
9196 10771 8.883731 ACTCAGATTTTTAGGTATGACAAATCG 58.116 33.333 0.00 0.00 38.39 3.34
9203 10778 8.792633 CCAACAAACTCAGATTTTTAGGTATGA 58.207 33.333 0.00 0.00 0.00 2.15
9207 10782 7.839680 ATCCAACAAACTCAGATTTTTAGGT 57.160 32.000 0.00 0.00 0.00 3.08
9221 10796 2.752903 ACGGCCTGAATATCCAACAAAC 59.247 45.455 0.00 0.00 0.00 2.93
9224 10800 2.238646 AGAACGGCCTGAATATCCAACA 59.761 45.455 0.00 0.00 0.00 3.33
9226 10802 3.644966 AAGAACGGCCTGAATATCCAA 57.355 42.857 0.00 0.00 0.00 3.53
9256 10832 8.326529 CAATAAGTTAAGGACCCCTAGAAAGAA 58.673 37.037 0.00 0.00 31.13 2.52
9317 10893 1.272781 GGACAGCGAGAGTTTGATCG 58.727 55.000 0.00 0.00 41.79 3.69
9351 10927 9.509855 TCGCGCATCTTTGTTTTATTTATTTAT 57.490 25.926 8.75 0.00 0.00 1.40
9352 10928 8.897457 TCGCGCATCTTTGTTTTATTTATTTA 57.103 26.923 8.75 0.00 0.00 1.40
9353 10929 7.804614 TCGCGCATCTTTGTTTTATTTATTT 57.195 28.000 8.75 0.00 0.00 1.40
9354 10930 7.804614 TTCGCGCATCTTTGTTTTATTTATT 57.195 28.000 8.75 0.00 0.00 1.40
9355 10931 7.515059 GCATTCGCGCATCTTTGTTTTATTTAT 60.515 33.333 8.75 0.00 0.00 1.40
9356 10932 6.237437 GCATTCGCGCATCTTTGTTTTATTTA 60.237 34.615 8.75 0.00 0.00 1.40
9357 10933 5.444481 GCATTCGCGCATCTTTGTTTTATTT 60.444 36.000 8.75 0.00 0.00 1.40
9358 10934 4.031652 GCATTCGCGCATCTTTGTTTTATT 59.968 37.500 8.75 0.00 0.00 1.40
9359 10935 3.547468 GCATTCGCGCATCTTTGTTTTAT 59.453 39.130 8.75 0.00 0.00 1.40
9360 10936 2.914214 GCATTCGCGCATCTTTGTTTTA 59.086 40.909 8.75 0.00 0.00 1.52
9361 10937 1.720852 GCATTCGCGCATCTTTGTTTT 59.279 42.857 8.75 0.00 0.00 2.43
9362 10938 1.068333 AGCATTCGCGCATCTTTGTTT 60.068 42.857 8.75 0.00 45.49 2.83
9363 10939 0.523072 AGCATTCGCGCATCTTTGTT 59.477 45.000 8.75 0.00 45.49 2.83
9364 10940 0.179181 CAGCATTCGCGCATCTTTGT 60.179 50.000 8.75 0.00 45.49 2.83
9365 10941 0.864377 CCAGCATTCGCGCATCTTTG 60.864 55.000 8.75 0.00 45.49 2.77
9366 10942 1.308069 ACCAGCATTCGCGCATCTTT 61.308 50.000 8.75 0.00 45.49 2.52
9367 10943 1.308069 AACCAGCATTCGCGCATCTT 61.308 50.000 8.75 0.00 45.49 2.40
9368 10944 1.308069 AAACCAGCATTCGCGCATCT 61.308 50.000 8.75 0.00 45.49 2.90
9369 10945 0.863119 GAAACCAGCATTCGCGCATC 60.863 55.000 8.75 0.00 45.49 3.91
9370 10946 1.137404 GAAACCAGCATTCGCGCAT 59.863 52.632 8.75 0.00 45.49 4.73
9371 10947 1.965930 AGAAACCAGCATTCGCGCA 60.966 52.632 8.75 0.00 45.49 6.09
9372 10948 1.512734 CAGAAACCAGCATTCGCGC 60.513 57.895 0.00 0.00 45.49 6.86
9373 10949 0.095935 CTCAGAAACCAGCATTCGCG 59.904 55.000 0.00 0.00 45.49 5.87
9374 10950 1.129437 GTCTCAGAAACCAGCATTCGC 59.871 52.381 0.00 0.00 38.99 4.70
9375 10951 1.734465 GGTCTCAGAAACCAGCATTCG 59.266 52.381 0.00 0.00 36.75 3.34
9376 10952 2.087646 GGGTCTCAGAAACCAGCATTC 58.912 52.381 0.00 0.00 38.62 2.67
9377 10953 1.707427 AGGGTCTCAGAAACCAGCATT 59.293 47.619 0.00 0.00 38.62 3.56
9378 10954 1.280421 GAGGGTCTCAGAAACCAGCAT 59.720 52.381 0.00 0.00 38.62 3.79
9379 10955 0.687354 GAGGGTCTCAGAAACCAGCA 59.313 55.000 0.00 0.00 38.62 4.41
9380 10956 0.980423 AGAGGGTCTCAGAAACCAGC 59.020 55.000 0.00 0.00 38.62 4.85
9381 10957 1.277557 CCAGAGGGTCTCAGAAACCAG 59.722 57.143 0.00 0.00 38.62 4.00
9382 10958 1.132849 TCCAGAGGGTCTCAGAAACCA 60.133 52.381 0.00 0.00 38.62 3.67
9383 10959 1.552792 CTCCAGAGGGTCTCAGAAACC 59.447 57.143 0.00 0.00 35.97 3.27
9384 10960 2.252714 ACTCCAGAGGGTCTCAGAAAC 58.747 52.381 0.00 0.00 32.06 2.78
9385 10961 2.704190 ACTCCAGAGGGTCTCAGAAA 57.296 50.000 0.00 0.00 32.06 2.52
9386 10962 2.378886 TGTACTCCAGAGGGTCTCAGAA 59.621 50.000 0.00 0.00 32.06 3.02
9387 10963 1.993301 TGTACTCCAGAGGGTCTCAGA 59.007 52.381 0.00 0.00 32.06 3.27
9388 10964 2.096248 GTGTACTCCAGAGGGTCTCAG 58.904 57.143 0.00 0.00 32.06 3.35
9389 10965 1.711375 AGTGTACTCCAGAGGGTCTCA 59.289 52.381 0.00 0.00 32.06 3.27
9390 10966 2.517998 AGTGTACTCCAGAGGGTCTC 57.482 55.000 0.00 0.00 34.93 3.36
9391 10967 3.261818 AAAGTGTACTCCAGAGGGTCT 57.738 47.619 0.00 0.00 34.93 3.85
9392 10968 4.282703 TGTTAAAGTGTACTCCAGAGGGTC 59.717 45.833 0.00 0.00 34.93 4.46
9393 10969 4.040095 GTGTTAAAGTGTACTCCAGAGGGT 59.960 45.833 0.00 0.00 34.93 4.34
9394 10970 4.566987 GTGTTAAAGTGTACTCCAGAGGG 58.433 47.826 0.00 0.00 0.00 4.30
9395 10971 4.235360 CGTGTTAAAGTGTACTCCAGAGG 58.765 47.826 0.00 0.00 0.00 3.69
9396 10972 4.868067 ACGTGTTAAAGTGTACTCCAGAG 58.132 43.478 0.00 0.00 0.00 3.35
9397 10973 4.924305 ACGTGTTAAAGTGTACTCCAGA 57.076 40.909 0.00 0.00 0.00 3.86
9398 10974 5.045215 TGAACGTGTTAAAGTGTACTCCAG 58.955 41.667 0.00 0.00 0.00 3.86
9399 10975 5.008619 TGAACGTGTTAAAGTGTACTCCA 57.991 39.130 0.00 0.00 0.00 3.86
9400 10976 7.642071 TTATGAACGTGTTAAAGTGTACTCC 57.358 36.000 0.00 0.00 0.00 3.85
9401 10977 9.361712 GTTTTATGAACGTGTTAAAGTGTACTC 57.638 33.333 0.00 0.00 0.00 2.59
9402 10978 8.881743 TGTTTTATGAACGTGTTAAAGTGTACT 58.118 29.630 0.00 0.00 0.00 2.73
9403 10979 8.936936 GTGTTTTATGAACGTGTTAAAGTGTAC 58.063 33.333 0.00 0.00 0.00 2.90
9404 10980 8.881743 AGTGTTTTATGAACGTGTTAAAGTGTA 58.118 29.630 0.00 0.00 0.00 2.90
9405 10981 7.754625 AGTGTTTTATGAACGTGTTAAAGTGT 58.245 30.769 0.00 0.00 0.00 3.55
9406 10982 9.872757 ATAGTGTTTTATGAACGTGTTAAAGTG 57.127 29.630 0.00 0.00 0.00 3.16
9412 10988 7.589954 GCAGAAATAGTGTTTTATGAACGTGTT 59.410 33.333 0.00 0.00 31.12 3.32
9413 10989 7.075741 GCAGAAATAGTGTTTTATGAACGTGT 58.924 34.615 0.00 0.00 31.12 4.49
9414 10990 7.075121 TGCAGAAATAGTGTTTTATGAACGTG 58.925 34.615 0.00 0.00 31.12 4.49
9415 10991 7.197071 TGCAGAAATAGTGTTTTATGAACGT 57.803 32.000 3.65 0.00 31.12 3.99
9416 10992 7.803189 ACTTGCAGAAATAGTGTTTTATGAACG 59.197 33.333 0.00 0.00 31.12 3.95
9417 10993 9.118236 GACTTGCAGAAATAGTGTTTTATGAAC 57.882 33.333 0.00 0.00 31.12 3.18
9418 10994 9.066892 AGACTTGCAGAAATAGTGTTTTATGAA 57.933 29.630 0.00 0.00 31.12 2.57
9419 10995 8.506437 CAGACTTGCAGAAATAGTGTTTTATGA 58.494 33.333 0.00 0.00 31.12 2.15
9420 10996 8.665175 CAGACTTGCAGAAATAGTGTTTTATG 57.335 34.615 0.00 0.00 32.36 1.90
9438 11014 6.728200 TGACAAGTAAATTTCAGCAGACTTG 58.272 36.000 20.19 20.19 45.84 3.16
9439 11015 6.016777 CCTGACAAGTAAATTTCAGCAGACTT 60.017 38.462 0.00 0.00 35.18 3.01
9440 11016 5.471456 CCTGACAAGTAAATTTCAGCAGACT 59.529 40.000 0.00 0.00 35.18 3.24
9441 11017 5.693814 CCTGACAAGTAAATTTCAGCAGAC 58.306 41.667 0.00 0.00 35.18 3.51
9442 11018 4.216257 GCCTGACAAGTAAATTTCAGCAGA 59.784 41.667 0.00 0.00 35.18 4.26
9443 11019 4.479619 GCCTGACAAGTAAATTTCAGCAG 58.520 43.478 0.00 0.00 35.18 4.24
9444 11020 3.058293 CGCCTGACAAGTAAATTTCAGCA 60.058 43.478 0.00 0.00 35.18 4.41
9445 11021 3.492313 CGCCTGACAAGTAAATTTCAGC 58.508 45.455 0.00 0.00 35.18 4.26
9446 11022 3.502211 ACCGCCTGACAAGTAAATTTCAG 59.498 43.478 0.00 0.00 36.10 3.02
9447 11023 3.482436 ACCGCCTGACAAGTAAATTTCA 58.518 40.909 0.00 0.00 0.00 2.69
9448 11024 4.499037 AACCGCCTGACAAGTAAATTTC 57.501 40.909 0.00 0.00 0.00 2.17
9449 11025 5.124936 GGATAACCGCCTGACAAGTAAATTT 59.875 40.000 0.00 0.00 0.00 1.82
9450 11026 4.638865 GGATAACCGCCTGACAAGTAAATT 59.361 41.667 0.00 0.00 0.00 1.82
9451 11027 4.080526 AGGATAACCGCCTGACAAGTAAAT 60.081 41.667 0.00 0.00 41.83 1.40
9452 11028 3.262405 AGGATAACCGCCTGACAAGTAAA 59.738 43.478 0.00 0.00 41.83 2.01
9453 11029 2.835764 AGGATAACCGCCTGACAAGTAA 59.164 45.455 0.00 0.00 41.83 2.24
9454 11030 2.429610 GAGGATAACCGCCTGACAAGTA 59.570 50.000 0.00 0.00 41.83 2.24
9455 11031 1.207329 GAGGATAACCGCCTGACAAGT 59.793 52.381 0.00 0.00 41.83 3.16
9456 11032 1.941325 GAGGATAACCGCCTGACAAG 58.059 55.000 0.00 0.00 41.83 3.16
9464 11040 0.389757 GTGAGAGGGAGGATAACCGC 59.610 60.000 0.00 0.00 41.83 5.68
9465 11041 1.041437 GGTGAGAGGGAGGATAACCG 58.959 60.000 0.00 0.00 41.83 4.44
9466 11042 2.043227 CAGGTGAGAGGGAGGATAACC 58.957 57.143 0.00 0.00 0.00 2.85
9467 11043 1.414550 GCAGGTGAGAGGGAGGATAAC 59.585 57.143 0.00 0.00 0.00 1.89
9468 11044 1.292242 AGCAGGTGAGAGGGAGGATAA 59.708 52.381 0.00 0.00 0.00 1.75
9469 11045 0.937441 AGCAGGTGAGAGGGAGGATA 59.063 55.000 0.00 0.00 0.00 2.59
9470 11046 0.043940 AAGCAGGTGAGAGGGAGGAT 59.956 55.000 0.00 0.00 0.00 3.24
9471 11047 0.616111 GAAGCAGGTGAGAGGGAGGA 60.616 60.000 0.00 0.00 0.00 3.71
9472 11048 0.617249 AGAAGCAGGTGAGAGGGAGG 60.617 60.000 0.00 0.00 0.00 4.30
9473 11049 1.754226 GTAGAAGCAGGTGAGAGGGAG 59.246 57.143 0.00 0.00 0.00 4.30
9474 11050 1.359474 AGTAGAAGCAGGTGAGAGGGA 59.641 52.381 0.00 0.00 0.00 4.20
9475 11051 1.859302 AGTAGAAGCAGGTGAGAGGG 58.141 55.000 0.00 0.00 0.00 4.30
9476 11052 2.828520 TGAAGTAGAAGCAGGTGAGAGG 59.171 50.000 0.00 0.00 0.00 3.69
9477 11053 3.367910 GGTGAAGTAGAAGCAGGTGAGAG 60.368 52.174 0.00 0.00 0.00 3.20
9478 11054 2.563179 GGTGAAGTAGAAGCAGGTGAGA 59.437 50.000 0.00 0.00 0.00 3.27
9479 11055 2.564947 AGGTGAAGTAGAAGCAGGTGAG 59.435 50.000 0.00 0.00 0.00 3.51
9480 11056 2.300152 CAGGTGAAGTAGAAGCAGGTGA 59.700 50.000 0.00 0.00 0.00 4.02
9481 11057 2.037772 ACAGGTGAAGTAGAAGCAGGTG 59.962 50.000 0.00 0.00 0.00 4.00
9482 11058 2.300437 GACAGGTGAAGTAGAAGCAGGT 59.700 50.000 0.00 0.00 0.00 4.00
9483 11059 2.564947 AGACAGGTGAAGTAGAAGCAGG 59.435 50.000 0.00 0.00 0.00 4.85
9484 11060 3.509575 AGAGACAGGTGAAGTAGAAGCAG 59.490 47.826 0.00 0.00 0.00 4.24
9485 11061 3.256879 CAGAGACAGGTGAAGTAGAAGCA 59.743 47.826 0.00 0.00 0.00 3.91
9486 11062 3.257127 ACAGAGACAGGTGAAGTAGAAGC 59.743 47.826 0.00 0.00 0.00 3.86
9487 11063 5.242838 AGAACAGAGACAGGTGAAGTAGAAG 59.757 44.000 0.00 0.00 0.00 2.85
9488 11064 5.141182 AGAACAGAGACAGGTGAAGTAGAA 58.859 41.667 0.00 0.00 0.00 2.10
9489 11065 4.730966 AGAACAGAGACAGGTGAAGTAGA 58.269 43.478 0.00 0.00 0.00 2.59
9490 11066 4.764823 AGAGAACAGAGACAGGTGAAGTAG 59.235 45.833 0.00 0.00 0.00 2.57
9491 11067 4.730966 AGAGAACAGAGACAGGTGAAGTA 58.269 43.478 0.00 0.00 0.00 2.24
9492 11068 3.571590 AGAGAACAGAGACAGGTGAAGT 58.428 45.455 0.00 0.00 0.00 3.01
9493 11069 3.571828 TGAGAGAACAGAGACAGGTGAAG 59.428 47.826 0.00 0.00 0.00 3.02
9494 11070 3.566351 TGAGAGAACAGAGACAGGTGAA 58.434 45.455 0.00 0.00 0.00 3.18
9495 11071 3.229697 TGAGAGAACAGAGACAGGTGA 57.770 47.619 0.00 0.00 0.00 4.02
9496 11072 4.533919 ATTGAGAGAACAGAGACAGGTG 57.466 45.455 0.00 0.00 0.00 4.00
9497 11073 6.865834 AATATTGAGAGAACAGAGACAGGT 57.134 37.500 0.00 0.00 0.00 4.00
9498 11074 8.040132 AGAAAATATTGAGAGAACAGAGACAGG 58.960 37.037 0.00 0.00 0.00 4.00
9499 11075 9.086336 GAGAAAATATTGAGAGAACAGAGACAG 57.914 37.037 0.00 0.00 0.00 3.51
9500 11076 8.037758 GGAGAAAATATTGAGAGAACAGAGACA 58.962 37.037 0.00 0.00 0.00 3.41
9501 11077 7.494298 GGGAGAAAATATTGAGAGAACAGAGAC 59.506 40.741 0.00 0.00 0.00 3.36
9502 11078 7.401493 AGGGAGAAAATATTGAGAGAACAGAGA 59.599 37.037 0.00 0.00 0.00 3.10
9503 11079 7.495279 CAGGGAGAAAATATTGAGAGAACAGAG 59.505 40.741 0.00 0.00 0.00 3.35
9504 11080 7.334090 CAGGGAGAAAATATTGAGAGAACAGA 58.666 38.462 0.00 0.00 0.00 3.41
9505 11081 7.551035 CAGGGAGAAAATATTGAGAGAACAG 57.449 40.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.