Multiple sequence alignment - TraesCS7D01G480600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G480600 chr7D 100.000 6214 0 0 1 6214 591279868 591286081 0.000000e+00 11476.0
1 TraesCS7D01G480600 chr7D 88.108 925 105 4 4316 5236 591251026 591251949 0.000000e+00 1094.0
2 TraesCS7D01G480600 chr7D 90.741 702 41 10 888 1583 591249821 591250504 0.000000e+00 915.0
3 TraesCS7D01G480600 chr7D 90.557 413 36 3 3254 3664 568372905 568373316 1.520000e-150 544.0
4 TraesCS7D01G480600 chr7D 86.450 369 43 7 3744 4109 568374024 568374388 1.260000e-106 398.0
5 TraesCS7D01G480600 chr7D 78.608 388 73 7 2497 2877 139193367 139193751 1.340000e-61 248.0
6 TraesCS7D01G480600 chr7D 78.320 369 65 15 416 776 247319256 247318895 2.250000e-54 224.0
7 TraesCS7D01G480600 chr7D 86.391 169 15 4 888 1056 591258013 591258173 1.780000e-40 178.0
8 TraesCS7D01G480600 chr7D 83.616 177 26 2 5062 5236 591258286 591258461 4.980000e-36 163.0
9 TraesCS7D01G480600 chr7D 91.111 45 4 0 732 776 247318893 247318849 1.870000e-05 62.1
10 TraesCS7D01G480600 chr7A 92.311 2250 135 23 3977 6214 681788529 681790752 0.000000e+00 3162.0
11 TraesCS7D01G480600 chr7A 88.545 1196 98 18 776 1953 681785893 681787067 0.000000e+00 1413.0
12 TraesCS7D01G480600 chr7A 88.491 921 101 4 4320 5236 681734393 681735312 0.000000e+00 1109.0
13 TraesCS7D01G480600 chr7A 87.895 727 57 9 888 1600 681733120 681733829 0.000000e+00 826.0
14 TraesCS7D01G480600 chr7A 89.806 412 39 3 3254 3664 657026225 657026634 5.520000e-145 525.0
15 TraesCS7D01G480600 chr7A 76.893 766 153 20 19 776 681784924 681785673 4.480000e-111 412.0
16 TraesCS7D01G480600 chr7A 86.217 341 39 6 2058 2394 681787108 681787444 4.580000e-96 363.0
17 TraesCS7D01G480600 chr7A 81.062 433 67 15 3682 4109 543071567 543071989 1.290000e-86 331.0
18 TraesCS7D01G480600 chr7A 80.050 401 67 8 2498 2892 121933181 121933574 1.020000e-72 285.0
19 TraesCS7D01G480600 chr7A 75.992 479 95 10 301 776 215929194 215929655 4.850000e-56 230.0
20 TraesCS7D01G480600 chr7A 79.321 324 61 5 2922 3242 287885936 287885616 8.110000e-54 222.0
21 TraesCS7D01G480600 chr7A 78.049 369 66 14 416 776 264852063 264851702 1.050000e-52 219.0
22 TraesCS7D01G480600 chr7A 78.947 323 62 5 2922 3239 200235776 200235455 1.360000e-51 215.0
23 TraesCS7D01G480600 chr7A 73.819 508 102 20 2891 3380 81914328 81913834 8.280000e-39 172.0
24 TraesCS7D01G480600 chr7B 92.107 1419 102 6 4253 5669 672523105 672521695 0.000000e+00 1991.0
25 TraesCS7D01G480600 chr7B 89.392 905 93 3 4318 5220 672548051 672547148 0.000000e+00 1136.0
26 TraesCS7D01G480600 chr7B 95.378 649 29 1 890 1537 672526509 672525861 0.000000e+00 1031.0
27 TraesCS7D01G480600 chr7B 88.392 715 56 17 892 1603 672549375 672548685 0.000000e+00 835.0
28 TraesCS7D01G480600 chr7B 91.646 407 31 2 3259 3664 623955619 623956023 1.510000e-155 560.0
29 TraesCS7D01G480600 chr7B 88.428 458 53 0 5755 6212 749519828 749519371 2.530000e-153 553.0
30 TraesCS7D01G480600 chr7B 86.695 466 47 13 3663 4118 623956062 623956522 2.590000e-138 503.0
31 TraesCS7D01G480600 chr7B 91.922 359 24 3 5856 6214 672520125 672519772 1.200000e-136 497.0
32 TraesCS7D01G480600 chr7B 86.364 242 29 3 776 1017 672531372 672531135 1.720000e-65 261.0
33 TraesCS7D01G480600 chr7B 92.500 160 10 2 5655 5813 672520283 672520125 1.740000e-55 228.0
34 TraesCS7D01G480600 chr7B 77.396 407 70 17 2497 2888 748308874 748309273 8.110000e-54 222.0
35 TraesCS7D01G480600 chr7B 80.597 201 32 5 3661 3860 748715263 748715069 1.400000e-31 148.0
36 TraesCS7D01G480600 chr1D 89.744 468 40 1 5755 6214 315036967 315036500 5.360000e-165 592.0
37 TraesCS7D01G480600 chr1D 89.325 459 46 3 5755 6212 319648598 319648142 1.940000e-159 573.0
38 TraesCS7D01G480600 chr3A 88.043 460 47 5 5758 6214 10348407 10347953 7.090000e-149 538.0
39 TraesCS7D01G480600 chr3A 79.290 338 63 6 2916 3250 26924514 26924847 4.850000e-56 230.0
40 TraesCS7D01G480600 chr2A 90.640 406 35 3 3260 3664 48390577 48390174 2.550000e-148 536.0
41 TraesCS7D01G480600 chr2A 82.937 463 73 6 5755 6214 439196324 439195865 4.480000e-111 412.0
42 TraesCS7D01G480600 chr2A 78.983 295 55 6 2946 3236 103365957 103365666 1.770000e-45 195.0
43 TraesCS7D01G480600 chr3D 87.686 471 43 11 3661 4119 359681622 359681155 9.170000e-148 534.0
44 TraesCS7D01G480600 chr3D 89.926 407 38 2 5755 6158 603541404 603541810 7.140000e-144 521.0
45 TraesCS7D01G480600 chr3D 88.729 417 30 9 3260 3673 359682046 359681644 1.560000e-135 494.0
46 TraesCS7D01G480600 chr3D 81.792 346 56 2 2547 2886 367346311 367346655 3.670000e-72 283.0
47 TraesCS7D01G480600 chr3D 80.556 288 53 3 2496 2782 367346013 367346298 1.050000e-52 219.0
48 TraesCS7D01G480600 chr4D 86.905 420 41 11 3259 3673 428951308 428950898 5.680000e-125 459.0
49 TraesCS7D01G480600 chr4D 81.915 94 17 0 663 756 503860267 503860360 5.160000e-11 80.5
50 TraesCS7D01G480600 chr2D 83.624 458 69 6 5755 6209 95193264 95193718 5.760000e-115 425.0
51 TraesCS7D01G480600 chr2D 76.904 407 73 13 2496 2896 6966415 6966806 1.750000e-50 211.0
52 TraesCS7D01G480600 chr2D 78.302 318 63 5 2926 3237 107011444 107011127 3.800000e-47 200.0
53 TraesCS7D01G480600 chr2D 77.607 326 64 9 2922 3242 646352281 646352602 8.220000e-44 189.0
54 TraesCS7D01G480600 chr4B 85.922 412 41 9 3274 3673 100575333 100574927 2.070000e-114 424.0
55 TraesCS7D01G480600 chr4B 80.913 241 43 3 2500 2740 648517870 648517633 2.960000e-43 187.0
56 TraesCS7D01G480600 chr5D 82.766 470 61 16 3663 4123 527145354 527145812 9.700000e-108 401.0
57 TraesCS7D01G480600 chr5D 81.236 453 68 13 3663 4109 61052080 61051639 3.560000e-92 350.0
58 TraesCS7D01G480600 chr5D 80.556 468 67 21 3664 4120 9390884 9391338 7.720000e-89 339.0
59 TraesCS7D01G480600 chr5D 74.330 783 161 29 2486 3239 507877413 507878184 4.710000e-76 296.0
60 TraesCS7D01G480600 chr5D 79.327 416 53 15 2497 2896 423247885 423247487 1.720000e-65 261.0
61 TraesCS7D01G480600 chr5D 82.192 219 34 3 2497 2715 91344219 91344432 3.830000e-42 183.0
62 TraesCS7D01G480600 chr5A 85.714 385 41 10 3259 3636 394767391 394767768 1.620000e-105 394.0
63 TraesCS7D01G480600 chr5A 79.896 383 60 12 2496 2867 423683523 423683899 1.330000e-66 265.0
64 TraesCS7D01G480600 chr6A 83.990 406 55 9 3260 3664 101799030 101799426 1.260000e-101 381.0
65 TraesCS7D01G480600 chr6A 80.942 467 77 6 3663 4123 2938327 2938787 5.920000e-95 359.0
66 TraesCS7D01G480600 chr6A 80.368 326 52 9 2922 3242 617674150 617673832 2.900000e-58 237.0
67 TraesCS7D01G480600 chr6A 76.860 242 45 7 2497 2737 220768926 220768695 6.540000e-25 126.0
68 TraesCS7D01G480600 chr5B 81.132 477 69 14 3663 4127 403189240 403189707 4.580000e-96 363.0
69 TraesCS7D01G480600 chr6D 79.379 354 60 10 2894 3242 472347028 472347373 2.900000e-58 237.0
70 TraesCS7D01G480600 chr6B 84.298 242 32 3 2497 2738 552398649 552398414 1.350000e-56 231.0
71 TraesCS7D01G480600 chr3B 76.946 334 59 14 3663 3992 767541512 767541193 2.300000e-39 174.0
72 TraesCS7D01G480600 chr3B 81.818 176 30 2 52 226 41249441 41249615 5.020000e-31 147.0
73 TraesCS7D01G480600 chr2B 87.879 132 15 1 6083 6214 144403849 144403719 3.000000e-33 154.0
74 TraesCS7D01G480600 chr4A 80.460 174 25 5 2514 2683 152760364 152760196 2.350000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G480600 chr7D 591279868 591286081 6213 False 11476.00 11476 100.00000 1 6214 1 chr7D.!!$F2 6213
1 TraesCS7D01G480600 chr7D 591249821 591251949 2128 False 1004.50 1094 89.42450 888 5236 2 chr7D.!!$F4 4348
2 TraesCS7D01G480600 chr7D 568372905 568374388 1483 False 471.00 544 88.50350 3254 4109 2 chr7D.!!$F3 855
3 TraesCS7D01G480600 chr7A 681784924 681790752 5828 False 1337.50 3162 85.99150 19 6214 4 chr7A.!!$F6 6195
4 TraesCS7D01G480600 chr7A 681733120 681735312 2192 False 967.50 1109 88.19300 888 5236 2 chr7A.!!$F5 4348
5 TraesCS7D01G480600 chr7B 672547148 672549375 2227 True 985.50 1136 88.89200 892 5220 2 chr7B.!!$R5 4328
6 TraesCS7D01G480600 chr7B 672519772 672526509 6737 True 936.75 1991 92.97675 890 6214 4 chr7B.!!$R4 5324
7 TraesCS7D01G480600 chr7B 623955619 623956522 903 False 531.50 560 89.17050 3259 4118 2 chr7B.!!$F2 859
8 TraesCS7D01G480600 chr3D 359681155 359682046 891 True 514.00 534 88.20750 3260 4119 2 chr3D.!!$R1 859
9 TraesCS7D01G480600 chr3D 367346013 367346655 642 False 251.00 283 81.17400 2496 2886 2 chr3D.!!$F2 390
10 TraesCS7D01G480600 chr5D 507877413 507878184 771 False 296.00 296 74.33000 2486 3239 1 chr5D.!!$F3 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 563 0.035056 CACAGTGACCATCTTCCCCC 60.035 60.0 0.00 0.0 0.00 5.40 F
2027 2572 0.168128 CCACCAACTCCGCGAATTTC 59.832 55.0 8.23 0.0 0.00 2.17 F
2395 3630 0.034186 CCTGCCCCTACTGCATTTCA 60.034 55.0 0.00 0.0 38.22 2.69 F
4206 7195 0.107410 AAACGGGTCTGTGCTGTTGA 60.107 50.0 0.00 0.0 0.00 3.18 F
4795 7793 0.667487 CACGATTGCGAGTCCAGTGT 60.667 55.0 0.00 0.0 41.64 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 3446 0.032615 ACAACCACTCCCCTTGCAAA 60.033 50.000 0.00 0.0 0.00 3.68 R
2882 4177 0.328258 ATTCCCCACTCCGTGAAAGG 59.672 55.000 0.00 0.0 35.23 3.11 R
4229 7218 0.602638 GAGTGGTTGCCGATGTGTGA 60.603 55.000 0.00 0.0 0.00 3.58 R
5141 8139 0.319900 CGCTAGTGCACTTCACCACT 60.320 55.000 27.06 0.0 46.81 4.00 R
5901 10332 5.749596 TTTATCAAATCATTCCGCGATGT 57.250 34.783 8.23 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.524300 TTTAGACGTTGCCAGTCGC 58.476 52.632 0.00 0.00 42.97 5.19
19 20 0.947180 TTTAGACGTTGCCAGTCGCC 60.947 55.000 0.00 0.00 42.97 5.54
20 21 2.089887 TTAGACGTTGCCAGTCGCCA 62.090 55.000 0.00 0.00 42.97 5.69
42 43 1.476488 GCAAGAACCACACCACAACTT 59.524 47.619 0.00 0.00 0.00 2.66
43 44 2.094234 GCAAGAACCACACCACAACTTT 60.094 45.455 0.00 0.00 0.00 2.66
72 73 2.055689 CTCCTCCTTGCACCACACCA 62.056 60.000 0.00 0.00 0.00 4.17
90 91 4.002797 GCCATGGTTTTCGGCTCT 57.997 55.556 14.67 0.00 42.78 4.09
93 94 1.816224 GCCATGGTTTTCGGCTCTAAA 59.184 47.619 14.67 0.00 42.78 1.85
94 95 2.415491 GCCATGGTTTTCGGCTCTAAAC 60.415 50.000 14.67 0.00 42.78 2.01
105 106 2.368875 CGGCTCTAAACCATAGTGGGAT 59.631 50.000 0.52 0.00 43.37 3.85
113 114 0.689623 CCATAGTGGGATGGCCTCTC 59.310 60.000 3.32 0.00 40.08 3.20
114 115 0.689623 CATAGTGGGATGGCCTCTCC 59.310 60.000 14.65 14.65 0.00 3.71
118 119 2.122989 GGGATGGCCTCTCCGGTA 60.123 66.667 15.99 0.00 37.80 4.02
119 120 1.536662 GGGATGGCCTCTCCGGTAT 60.537 63.158 15.99 0.00 37.80 2.73
121 122 1.122019 GGATGGCCTCTCCGGTATGT 61.122 60.000 3.32 0.00 37.80 2.29
123 124 1.968493 GATGGCCTCTCCGGTATGTAA 59.032 52.381 3.32 0.00 37.80 2.41
184 185 0.382515 GCGAGCTAGCCGGATATAGG 59.617 60.000 21.70 0.00 0.00 2.57
214 215 2.391389 GCAAGTTCTTCGGAGCCGG 61.391 63.158 9.29 0.00 40.25 6.13
216 217 2.879233 AAGTTCTTCGGAGCCGGCA 61.879 57.895 31.54 4.11 40.25 5.69
228 229 3.372730 CCGGCACCACCACCATTG 61.373 66.667 0.00 0.00 39.03 2.82
229 230 2.597217 CGGCACCACCACCATTGT 60.597 61.111 0.00 0.00 39.03 2.71
230 231 2.625823 CGGCACCACCACCATTGTC 61.626 63.158 0.00 0.00 39.03 3.18
231 232 1.530419 GGCACCACCACCATTGTCA 60.530 57.895 0.00 0.00 38.86 3.58
232 233 0.899717 GGCACCACCACCATTGTCAT 60.900 55.000 0.00 0.00 38.86 3.06
233 234 0.244450 GCACCACCACCATTGTCATG 59.756 55.000 0.00 0.00 0.00 3.07
234 235 0.244450 CACCACCACCATTGTCATGC 59.756 55.000 0.00 0.00 0.00 4.06
235 236 0.899717 ACCACCACCATTGTCATGCC 60.900 55.000 0.00 0.00 0.00 4.40
236 237 0.899253 CCACCACCATTGTCATGCCA 60.899 55.000 0.00 0.00 0.00 4.92
237 238 1.187974 CACCACCATTGTCATGCCAT 58.812 50.000 0.00 0.00 0.00 4.40
238 239 1.135527 CACCACCATTGTCATGCCATC 59.864 52.381 0.00 0.00 0.00 3.51
239 240 1.006281 ACCACCATTGTCATGCCATCT 59.994 47.619 0.00 0.00 0.00 2.90
240 241 1.407618 CCACCATTGTCATGCCATCTG 59.592 52.381 0.00 0.00 0.00 2.90
241 242 1.108776 ACCATTGTCATGCCATCTGC 58.891 50.000 0.00 0.00 41.77 4.26
262 263 4.641645 CGTCCAGGCTGGCCAACA 62.642 66.667 29.02 8.37 37.47 3.33
263 264 2.203480 GTCCAGGCTGGCCAACAA 60.203 61.111 29.02 7.54 37.47 2.83
264 265 2.203480 TCCAGGCTGGCCAACAAC 60.203 61.111 29.02 0.00 37.47 3.32
269 270 2.193536 GGCTGGCCAACAACGTCTT 61.194 57.895 7.01 0.00 35.81 3.01
272 273 0.817634 CTGGCCAACAACGTCTTCCA 60.818 55.000 7.01 0.00 0.00 3.53
275 276 1.444119 GCCAACAACGTCTTCCAGCA 61.444 55.000 0.00 0.00 0.00 4.41
282 283 1.298859 ACGTCTTCCAGCAAATCCGC 61.299 55.000 0.00 0.00 0.00 5.54
284 285 1.378514 TCTTCCAGCAAATCCGCCC 60.379 57.895 0.00 0.00 0.00 6.13
286 287 3.216985 TTCCAGCAAATCCGCCCCA 62.217 57.895 0.00 0.00 0.00 4.96
301 302 3.895025 CCAAGTGATGGTCGCTGG 58.105 61.111 0.00 0.00 44.85 4.85
303 304 0.742281 CCAAGTGATGGTCGCTGGAG 60.742 60.000 0.00 0.00 44.85 3.86
305 306 0.247736 AAGTGATGGTCGCTGGAGAC 59.752 55.000 0.00 0.00 37.29 3.36
306 307 0.900182 AGTGATGGTCGCTGGAGACA 60.900 55.000 6.78 0.00 42.62 3.41
307 308 0.176680 GTGATGGTCGCTGGAGACAT 59.823 55.000 6.78 0.00 42.62 3.06
327 343 1.039856 AAGCCATGTTTGCGAAGGTT 58.960 45.000 0.00 0.00 0.00 3.50
331 347 1.662876 CCATGTTTGCGAAGGTTGACG 60.663 52.381 0.00 0.00 0.00 4.35
338 354 2.280592 GAAGGTTGACGCGGTGGT 60.281 61.111 12.47 0.00 0.00 4.16
340 356 4.619227 AGGTTGACGCGGTGGTGG 62.619 66.667 12.47 0.00 0.00 4.61
341 357 4.922026 GGTTGACGCGGTGGTGGT 62.922 66.667 12.47 0.00 0.00 4.16
405 421 3.047877 GCTACGCCCGCAACTGTT 61.048 61.111 0.00 0.00 0.00 3.16
406 422 2.860293 CTACGCCCGCAACTGTTG 59.140 61.111 15.98 15.98 0.00 3.33
427 444 4.637276 TGCGAACATGGAGAAAAAGTAGA 58.363 39.130 0.00 0.00 0.00 2.59
437 454 6.003950 TGGAGAAAAAGTAGACCATGAAAGG 58.996 40.000 0.00 0.00 0.00 3.11
439 456 5.635120 AGAAAAAGTAGACCATGAAAGGCT 58.365 37.500 0.00 0.00 0.00 4.58
444 461 3.056313 GACCATGAAAGGCTGCCGC 62.056 63.158 13.96 7.64 0.00 6.53
445 462 4.183686 CCATGAAAGGCTGCCGCG 62.184 66.667 13.96 0.00 36.88 6.46
468 485 1.352622 TGTGTCCCAAGAAGGCCACT 61.353 55.000 5.01 0.00 38.11 4.00
493 510 2.033448 CCTTGCCGGCCTACACAA 59.967 61.111 26.77 9.46 0.00 3.33
494 511 2.332654 CCTTGCCGGCCTACACAAC 61.333 63.158 26.77 0.00 0.00 3.32
498 515 3.065306 CCGGCCTACACAACTGGA 58.935 61.111 0.00 0.00 30.92 3.86
499 516 1.079127 CCGGCCTACACAACTGGAG 60.079 63.158 0.00 0.00 30.92 3.86
503 520 1.066787 GGCCTACACAACTGGAGACTC 60.067 57.143 0.00 0.00 27.84 3.36
506 523 1.542030 CTACACAACTGGAGACTCGCT 59.458 52.381 0.00 0.00 27.84 4.93
508 525 0.730834 CACAACTGGAGACTCGCTCG 60.731 60.000 0.00 0.00 44.91 5.03
514 531 1.515304 GGAGACTCGCTCGCTTCAC 60.515 63.158 0.00 0.00 44.91 3.18
536 554 3.056458 CGTAGGCCACAGTGACCA 58.944 61.111 8.83 0.00 0.00 4.02
543 561 0.678048 GCCACAGTGACCATCTTCCC 60.678 60.000 0.62 0.00 0.00 3.97
545 563 0.035056 CACAGTGACCATCTTCCCCC 60.035 60.000 0.00 0.00 0.00 5.40
548 566 2.285368 TGACCATCTTCCCCCGCT 60.285 61.111 0.00 0.00 0.00 5.52
550 568 2.041265 ACCATCTTCCCCCGCTCT 59.959 61.111 0.00 0.00 0.00 4.09
555 573 0.991920 ATCTTCCCCCGCTCTCAAAA 59.008 50.000 0.00 0.00 0.00 2.44
562 580 0.821711 CCCGCTCTCAAAACCAACCA 60.822 55.000 0.00 0.00 0.00 3.67
576 594 1.811965 CCAACCATGATTCGTGCTTCA 59.188 47.619 0.00 0.00 0.00 3.02
577 595 2.414559 CCAACCATGATTCGTGCTTCAC 60.415 50.000 0.00 0.00 0.00 3.18
603 621 2.824961 GAGGCTGCTCTCATCCTCT 58.175 57.895 11.62 0.00 46.80 3.69
606 624 1.106351 GGCTGCTCTCATCCTCTCGA 61.106 60.000 0.00 0.00 0.00 4.04
630 648 1.188219 GCATATCCCTCCGAGGCTCA 61.188 60.000 15.95 0.00 32.73 4.26
675 694 2.172505 TGGACACAGGAAGACATGTTGT 59.827 45.455 0.00 0.00 39.03 3.32
681 700 3.181429 ACAGGAAGACATGTTGTGGGAAT 60.181 43.478 0.00 0.00 37.81 3.01
682 701 3.441572 CAGGAAGACATGTTGTGGGAATC 59.558 47.826 0.00 0.00 0.00 2.52
711 730 2.716814 ACGGCCGGTGATAGACTAG 58.283 57.895 31.76 0.00 0.00 2.57
712 731 0.822532 ACGGCCGGTGATAGACTAGG 60.823 60.000 31.76 0.00 0.00 3.02
729 748 6.557568 AGACTAGGTTAGAATAGCATAGCCT 58.442 40.000 0.00 0.00 39.32 4.58
740 759 6.379703 AGAATAGCATAGCCTAGTCCACTATG 59.620 42.308 11.88 11.88 43.93 2.23
741 760 3.169099 AGCATAGCCTAGTCCACTATGG 58.831 50.000 15.45 0.00 42.22 2.74
806 1045 9.689976 ATGAATTTTGTTCGATTTGTTGACATA 57.310 25.926 0.00 0.00 0.00 2.29
808 1047 9.941991 GAATTTTGTTCGATTTGTTGACATATG 57.058 29.630 0.00 0.00 0.00 1.78
809 1048 9.474920 AATTTTGTTCGATTTGTTGACATATGT 57.525 25.926 8.43 8.43 0.00 2.29
822 1061 8.661352 TGTTGACATATGTATTAGTGTCCATG 57.339 34.615 8.71 0.00 40.07 3.66
827 1066 8.721133 ACATATGTATTAGTGTCCATGGACTA 57.279 34.615 37.92 24.12 44.80 2.59
835 1074 4.017808 AGTGTCCATGGACTAGTACTCAC 58.982 47.826 37.92 26.70 44.80 3.51
837 1076 2.358267 GTCCATGGACTAGTACTCACGG 59.642 54.545 33.47 3.11 41.57 4.94
840 1079 3.280295 CATGGACTAGTACTCACGGTCT 58.720 50.000 6.66 0.00 34.76 3.85
841 1080 4.449131 CATGGACTAGTACTCACGGTCTA 58.551 47.826 6.66 2.91 34.76 2.59
873 1112 2.222027 GGTGTCTGGTTTGAAGGTCTG 58.778 52.381 0.00 0.00 0.00 3.51
876 1115 2.158623 TGTCTGGTTTGAAGGTCTGCAT 60.159 45.455 0.00 0.00 0.00 3.96
877 1116 2.887152 GTCTGGTTTGAAGGTCTGCATT 59.113 45.455 0.00 0.00 0.00 3.56
878 1117 4.072131 GTCTGGTTTGAAGGTCTGCATTA 58.928 43.478 0.00 0.00 0.00 1.90
879 1118 4.518970 GTCTGGTTTGAAGGTCTGCATTAA 59.481 41.667 0.00 0.00 0.00 1.40
880 1119 5.009610 GTCTGGTTTGAAGGTCTGCATTAAA 59.990 40.000 0.00 0.00 0.00 1.52
881 1120 5.241506 TCTGGTTTGAAGGTCTGCATTAAAG 59.758 40.000 0.00 0.00 0.00 1.85
886 1125 3.696051 TGAAGGTCTGCATTAAAGATGCC 59.304 43.478 8.36 0.00 43.94 4.40
903 1142 6.869206 AGATGCCCTAACTCTTACAGTTTA 57.131 37.500 0.00 0.00 43.38 2.01
913 1152 6.742559 ACTCTTACAGTTTAGAGGGAACAA 57.257 37.500 13.94 0.00 41.73 2.83
939 1178 4.524714 TCTCTCTCCGAGACAAAGAAACAT 59.475 41.667 0.00 0.00 43.72 2.71
1219 1462 2.355986 AACATACCGCCGGAGCTCA 61.356 57.895 11.71 0.00 36.60 4.26
1252 1495 1.723542 GTCGCGTCGTTCGTCTTCA 60.724 57.895 5.77 0.00 42.13 3.02
1274 1517 2.002586 GCTGAATAAGAACTGCGCAGA 58.997 47.619 42.03 21.31 0.00 4.26
1472 1718 2.746277 GTACCCAAGCCTGTGCCG 60.746 66.667 0.00 0.00 38.69 5.69
1516 1772 3.317993 AGGTAATACCAAATCGCCATTGC 59.682 43.478 12.54 0.00 41.95 3.56
1538 1794 5.184096 TGCTGTGTTCTTTGTTTGGAGTTTA 59.816 36.000 0.00 0.00 0.00 2.01
1543 1799 5.592688 TGTTCTTTGTTTGGAGTTTAGAGGG 59.407 40.000 0.00 0.00 0.00 4.30
1544 1800 5.640158 TCTTTGTTTGGAGTTTAGAGGGA 57.360 39.130 0.00 0.00 0.00 4.20
1550 1806 5.104900 TGTTTGGAGTTTAGAGGGATAGCTC 60.105 44.000 0.00 0.00 0.00 4.09
1587 1850 8.160342 CGTCCAACGAAAGATATTTATATTCGG 58.840 37.037 16.11 5.72 46.05 4.30
1610 1873 3.071457 TGGATATCCGCAATGATGTCTGT 59.929 43.478 17.04 0.00 39.43 3.41
1656 1929 4.445453 TCATAGCTAGGTTCGTTCTCGTA 58.555 43.478 5.15 0.00 38.33 3.43
1666 1939 1.782569 TCGTTCTCGTAAACAACAGCG 59.217 47.619 4.14 0.00 38.33 5.18
1671 1958 3.968649 TCTCGTAAACAACAGCGTAACT 58.031 40.909 0.00 0.00 0.00 2.24
1718 2187 2.519377 ACACAACAGCGTTGCTAGTA 57.481 45.000 17.42 0.00 36.40 1.82
1799 2306 6.718388 ACATGACATGCATATACAAAACTCG 58.282 36.000 15.49 0.00 34.82 4.18
1803 2310 5.189928 ACATGCATATACAAAACTCGGGAA 58.810 37.500 0.00 0.00 0.00 3.97
1806 2313 6.130298 TGCATATACAAAACTCGGGAAATG 57.870 37.500 0.00 0.00 0.00 2.32
1827 2342 4.798882 TGGTGGTCAAAGATAAGGTTGTT 58.201 39.130 0.00 0.00 0.00 2.83
1863 2393 3.521727 ACTTCACCTAATCACCCACTCT 58.478 45.455 0.00 0.00 0.00 3.24
1892 2422 1.372997 CTCCGTTCTCACGTGGGTG 60.373 63.158 16.53 6.71 45.62 4.61
1897 2427 1.145156 TTCTCACGTGGGTGTGTGG 59.855 57.895 16.53 0.00 44.68 4.17
1953 2483 9.851686 AGATATAAAATGAAGCAGGTACATTCA 57.148 29.630 0.00 0.00 37.36 2.57
1954 2484 9.884465 GATATAAAATGAAGCAGGTACATTCAC 57.116 33.333 0.00 0.00 35.89 3.18
1955 2485 7.701539 ATAAAATGAAGCAGGTACATTCACA 57.298 32.000 0.00 0.00 35.89 3.58
1956 2486 6.403866 AAAATGAAGCAGGTACATTCACAA 57.596 33.333 0.00 0.00 35.89 3.33
1957 2487 6.403866 AAATGAAGCAGGTACATTCACAAA 57.596 33.333 0.00 0.00 35.89 2.83
1958 2488 6.403866 AATGAAGCAGGTACATTCACAAAA 57.596 33.333 0.00 0.00 35.89 2.44
1959 2489 5.843673 TGAAGCAGGTACATTCACAAAAA 57.156 34.783 0.00 0.00 0.00 1.94
1996 2541 5.466058 AGGTAACACACGATCTACGATCTAG 59.534 44.000 0.00 0.00 42.16 2.43
1999 2544 4.059511 ACACACGATCTACGATCTAGGAG 58.940 47.826 0.00 0.00 45.77 3.69
2000 2545 3.068560 ACACGATCTACGATCTAGGAGC 58.931 50.000 0.00 0.00 45.77 4.70
2001 2546 3.244284 ACACGATCTACGATCTAGGAGCT 60.244 47.826 0.00 0.00 45.77 4.09
2002 2547 3.124466 CACGATCTACGATCTAGGAGCTG 59.876 52.174 0.00 0.00 45.77 4.24
2003 2548 2.675844 CGATCTACGATCTAGGAGCTGG 59.324 54.545 0.00 0.00 45.77 4.85
2004 2549 1.898902 TCTACGATCTAGGAGCTGGC 58.101 55.000 0.00 0.00 0.00 4.85
2005 2550 1.143073 TCTACGATCTAGGAGCTGGCA 59.857 52.381 0.00 0.00 0.00 4.92
2006 2551 1.539388 CTACGATCTAGGAGCTGGCAG 59.461 57.143 10.94 10.94 0.00 4.85
2007 2552 0.396417 ACGATCTAGGAGCTGGCAGT 60.396 55.000 17.16 2.59 0.00 4.40
2008 2553 0.313672 CGATCTAGGAGCTGGCAGTC 59.686 60.000 17.16 11.89 0.00 3.51
2009 2554 0.678950 GATCTAGGAGCTGGCAGTCC 59.321 60.000 21.34 21.34 0.00 3.85
2011 2556 0.972983 TCTAGGAGCTGGCAGTCCAC 60.973 60.000 26.88 13.23 37.47 4.02
2014 2559 2.431683 GAGCTGGCAGTCCACCAA 59.568 61.111 17.16 0.00 37.47 3.67
2015 2560 1.968540 GAGCTGGCAGTCCACCAAC 60.969 63.158 17.16 0.00 37.47 3.77
2016 2561 2.113986 GCTGGCAGTCCACCAACT 59.886 61.111 17.16 0.00 37.47 3.16
2017 2562 1.968540 GCTGGCAGTCCACCAACTC 60.969 63.158 17.16 0.00 37.47 3.01
2018 2563 1.302832 CTGGCAGTCCACCAACTCC 60.303 63.158 6.28 0.00 37.47 3.85
2019 2564 2.358737 GGCAGTCCACCAACTCCG 60.359 66.667 0.00 0.00 0.00 4.63
2020 2565 3.050275 GCAGTCCACCAACTCCGC 61.050 66.667 0.00 0.00 0.00 5.54
2021 2566 2.738521 CAGTCCACCAACTCCGCG 60.739 66.667 0.00 0.00 0.00 6.46
2022 2567 2.915659 AGTCCACCAACTCCGCGA 60.916 61.111 8.23 0.00 0.00 5.87
2023 2568 2.029964 GTCCACCAACTCCGCGAA 59.970 61.111 8.23 0.00 0.00 4.70
2024 2569 1.375523 GTCCACCAACTCCGCGAAT 60.376 57.895 8.23 0.00 0.00 3.34
2025 2570 0.953960 GTCCACCAACTCCGCGAATT 60.954 55.000 8.23 0.00 0.00 2.17
2026 2571 0.250553 TCCACCAACTCCGCGAATTT 60.251 50.000 8.23 0.00 0.00 1.82
2027 2572 0.168128 CCACCAACTCCGCGAATTTC 59.832 55.000 8.23 0.00 0.00 2.17
2028 2573 1.156736 CACCAACTCCGCGAATTTCT 58.843 50.000 8.23 0.00 0.00 2.52
2029 2574 2.343101 CACCAACTCCGCGAATTTCTA 58.657 47.619 8.23 0.00 0.00 2.10
2030 2575 2.739913 CACCAACTCCGCGAATTTCTAA 59.260 45.455 8.23 0.00 0.00 2.10
2031 2576 3.000727 ACCAACTCCGCGAATTTCTAAG 58.999 45.455 8.23 0.00 0.00 2.18
2032 2577 3.259064 CCAACTCCGCGAATTTCTAAGA 58.741 45.455 8.23 0.00 0.00 2.10
2033 2578 3.871594 CCAACTCCGCGAATTTCTAAGAT 59.128 43.478 8.23 0.00 0.00 2.40
2034 2579 4.025647 CCAACTCCGCGAATTTCTAAGATC 60.026 45.833 8.23 0.00 0.00 2.75
2035 2580 4.657436 ACTCCGCGAATTTCTAAGATCT 57.343 40.909 8.23 0.00 0.00 2.75
2036 2581 4.363999 ACTCCGCGAATTTCTAAGATCTG 58.636 43.478 8.23 0.00 0.00 2.90
2037 2582 3.123804 TCCGCGAATTTCTAAGATCTGC 58.876 45.455 8.23 0.00 0.00 4.26
2038 2583 2.097202 CCGCGAATTTCTAAGATCTGCG 60.097 50.000 8.23 10.35 42.40 5.18
2039 2584 2.097202 CGCGAATTTCTAAGATCTGCGG 60.097 50.000 0.00 0.00 39.41 5.69
2040 2585 3.123804 GCGAATTTCTAAGATCTGCGGA 58.876 45.455 0.00 0.00 0.00 5.54
2041 2586 3.183373 GCGAATTTCTAAGATCTGCGGAG 59.817 47.826 0.00 0.00 0.00 4.63
2055 2600 2.266055 GGAGCACAAGGACTCCCG 59.734 66.667 0.00 0.00 45.71 5.14
2056 2601 2.435059 GAGCACAAGGACTCCCGC 60.435 66.667 0.00 0.00 37.58 6.13
2057 2602 3.240134 GAGCACAAGGACTCCCGCA 62.240 63.158 0.00 0.00 37.58 5.69
2068 2613 3.576982 AGGACTCCCGCAATTAATCGATA 59.423 43.478 0.00 0.00 37.58 2.92
2073 2618 5.763204 ACTCCCGCAATTAATCGATATTGTT 59.237 36.000 17.86 0.00 34.88 2.83
2074 2619 5.996219 TCCCGCAATTAATCGATATTGTTG 58.004 37.500 17.86 12.82 34.88 3.33
2176 3409 7.083875 ACAACCAATGTATCTGATAAAACCG 57.916 36.000 0.00 0.00 41.63 4.44
2177 3410 6.094881 ACAACCAATGTATCTGATAAAACCGG 59.905 38.462 0.00 0.00 41.63 5.28
2196 3429 3.181520 CCGGAAGTTACAAGAAATGAGCG 60.182 47.826 0.00 0.00 0.00 5.03
2229 3462 2.990740 TATTTTGCAAGGGGAGTGGT 57.009 45.000 0.00 0.00 0.00 4.16
2268 3501 1.019278 TTCAAGTCCTCGCGATTGCC 61.019 55.000 10.36 0.00 38.08 4.52
2288 3521 8.897872 ATTGCCAATTTGGATTCATATTCTTC 57.102 30.769 19.76 0.00 40.96 2.87
2292 3527 8.606602 GCCAATTTGGATTCATATTCTTCAAAC 58.393 33.333 19.76 0.00 40.96 2.93
2293 3528 9.656040 CCAATTTGGATTCATATTCTTCAAACA 57.344 29.630 10.03 0.00 40.96 2.83
2321 3556 4.963373 TGTTGTAGGCTAACTTTACTGCA 58.037 39.130 0.00 0.00 0.00 4.41
2324 3559 4.766375 TGTAGGCTAACTTTACTGCATCC 58.234 43.478 0.00 0.00 0.00 3.51
2325 3560 4.224147 TGTAGGCTAACTTTACTGCATCCA 59.776 41.667 0.00 0.00 0.00 3.41
2331 3566 0.654683 CTTTACTGCATCCAGAGCGC 59.345 55.000 0.00 0.00 41.77 5.92
2376 3611 7.040823 TGACAAAAATGAAATAAATGTTGGCCC 60.041 33.333 0.00 0.00 0.00 5.80
2379 3614 4.758773 ATGAAATAAATGTTGGCCCCTG 57.241 40.909 0.00 0.00 0.00 4.45
2394 3629 0.753111 CCCTGCCCCTACTGCATTTC 60.753 60.000 0.00 0.00 38.22 2.17
2395 3630 0.034186 CCTGCCCCTACTGCATTTCA 60.034 55.000 0.00 0.00 38.22 2.69
2396 3631 1.616725 CCTGCCCCTACTGCATTTCAA 60.617 52.381 0.00 0.00 38.22 2.69
2397 3632 2.170166 CTGCCCCTACTGCATTTCAAA 58.830 47.619 0.00 0.00 38.22 2.69
2398 3633 2.165030 CTGCCCCTACTGCATTTCAAAG 59.835 50.000 0.00 0.00 38.22 2.77
2400 3635 2.164422 GCCCCTACTGCATTTCAAAGTC 59.836 50.000 0.00 0.00 0.00 3.01
2401 3636 2.755103 CCCCTACTGCATTTCAAAGTCC 59.245 50.000 0.00 0.00 0.00 3.85
2402 3637 3.420893 CCCTACTGCATTTCAAAGTCCA 58.579 45.455 0.00 0.00 0.00 4.02
2403 3638 3.441572 CCCTACTGCATTTCAAAGTCCAG 59.558 47.826 0.00 0.00 0.00 3.86
2404 3639 4.326826 CCTACTGCATTTCAAAGTCCAGA 58.673 43.478 0.00 0.00 0.00 3.86
2405 3640 4.761739 CCTACTGCATTTCAAAGTCCAGAA 59.238 41.667 0.00 0.00 0.00 3.02
2406 3641 5.241506 CCTACTGCATTTCAAAGTCCAGAAA 59.758 40.000 0.00 0.00 38.04 2.52
2407 3642 5.596836 ACTGCATTTCAAAGTCCAGAAAA 57.403 34.783 0.00 0.00 37.30 2.29
2408 3643 5.351458 ACTGCATTTCAAAGTCCAGAAAAC 58.649 37.500 0.00 0.00 37.30 2.43
2409 3644 5.105392 ACTGCATTTCAAAGTCCAGAAAACA 60.105 36.000 0.00 0.00 37.30 2.83
2410 3645 5.728471 TGCATTTCAAAGTCCAGAAAACAA 58.272 33.333 0.00 0.00 37.30 2.83
2411 3646 6.169094 TGCATTTCAAAGTCCAGAAAACAAA 58.831 32.000 0.00 0.00 37.30 2.83
2412 3647 6.091986 TGCATTTCAAAGTCCAGAAAACAAAC 59.908 34.615 0.00 0.00 37.30 2.93
2413 3648 6.091986 GCATTTCAAAGTCCAGAAAACAAACA 59.908 34.615 0.00 0.00 37.30 2.83
2414 3649 7.455447 CATTTCAAAGTCCAGAAAACAAACAC 58.545 34.615 0.00 0.00 37.30 3.32
2415 3650 5.975693 TCAAAGTCCAGAAAACAAACACT 57.024 34.783 0.00 0.00 0.00 3.55
2416 3651 7.455641 TTCAAAGTCCAGAAAACAAACACTA 57.544 32.000 0.00 0.00 0.00 2.74
2417 3652 7.639113 TCAAAGTCCAGAAAACAAACACTAT 57.361 32.000 0.00 0.00 0.00 2.12
2418 3653 8.740123 TCAAAGTCCAGAAAACAAACACTATA 57.260 30.769 0.00 0.00 0.00 1.31
2419 3654 9.179909 TCAAAGTCCAGAAAACAAACACTATAA 57.820 29.630 0.00 0.00 0.00 0.98
2420 3655 9.965824 CAAAGTCCAGAAAACAAACACTATAAT 57.034 29.630 0.00 0.00 0.00 1.28
2505 3791 8.375493 ACCAAATTCATGTACTACTAGAAGGA 57.625 34.615 0.00 0.00 0.00 3.36
2510 3796 8.783660 ATTCATGTACTACTAGAAGGATTGGA 57.216 34.615 0.00 0.00 0.00 3.53
2532 3818 2.252260 CTTTGCTGCGTCGTTGGG 59.748 61.111 0.00 0.00 0.00 4.12
2551 3838 7.039644 TCGTTGGGGTTGTTTGTATTTCATAAT 60.040 33.333 0.00 0.00 0.00 1.28
2620 3909 9.787532 TCTGAAAAGTCAAACATCTTTAAGTTG 57.212 29.630 1.87 1.87 34.14 3.16
2673 3962 9.959721 ATACCCATAATATCAAATAGGTGTCAC 57.040 33.333 0.00 0.00 0.00 3.67
2677 3966 9.658799 CCATAATATCAAATAGGTGTCACTAGG 57.341 37.037 2.35 0.00 0.00 3.02
2742 4031 8.687824 ATTGTCGATGTCAATATTTTTGGTTC 57.312 30.769 0.00 0.00 34.34 3.62
2821 4116 5.105351 GGAACTGAGGGAATATTTGGTTTGG 60.105 44.000 0.00 0.00 0.00 3.28
2823 4118 2.757868 TGAGGGAATATTTGGTTTGGCG 59.242 45.455 0.00 0.00 0.00 5.69
2826 4121 3.020984 GGGAATATTTGGTTTGGCGAGA 58.979 45.455 0.00 0.00 0.00 4.04
2827 4122 3.066760 GGGAATATTTGGTTTGGCGAGAG 59.933 47.826 0.00 0.00 0.00 3.20
2828 4123 3.066760 GGAATATTTGGTTTGGCGAGAGG 59.933 47.826 0.00 0.00 0.00 3.69
2829 4124 2.122783 TATTTGGTTTGGCGAGAGGG 57.877 50.000 0.00 0.00 0.00 4.30
2830 4125 1.250840 ATTTGGTTTGGCGAGAGGGC 61.251 55.000 0.00 0.00 42.69 5.19
2837 4132 2.903357 GGCGAGAGGGCAAGATGA 59.097 61.111 0.00 0.00 41.77 2.92
2838 4133 1.449353 GGCGAGAGGGCAAGATGAT 59.551 57.895 0.00 0.00 41.77 2.45
2839 4134 0.883814 GGCGAGAGGGCAAGATGATG 60.884 60.000 0.00 0.00 41.77 3.07
2840 4135 0.883814 GCGAGAGGGCAAGATGATGG 60.884 60.000 0.00 0.00 0.00 3.51
2841 4136 0.755079 CGAGAGGGCAAGATGATGGA 59.245 55.000 0.00 0.00 0.00 3.41
2842 4137 1.139654 CGAGAGGGCAAGATGATGGAA 59.860 52.381 0.00 0.00 0.00 3.53
2843 4138 2.224475 CGAGAGGGCAAGATGATGGAAT 60.224 50.000 0.00 0.00 0.00 3.01
2844 4139 3.007290 CGAGAGGGCAAGATGATGGAATA 59.993 47.826 0.00 0.00 0.00 1.75
2845 4140 4.323333 CGAGAGGGCAAGATGATGGAATAT 60.323 45.833 0.00 0.00 0.00 1.28
2846 4141 4.919793 AGAGGGCAAGATGATGGAATATG 58.080 43.478 0.00 0.00 0.00 1.78
2847 4142 4.353191 AGAGGGCAAGATGATGGAATATGT 59.647 41.667 0.00 0.00 0.00 2.29
2848 4143 5.070823 AGGGCAAGATGATGGAATATGTT 57.929 39.130 0.00 0.00 0.00 2.71
2849 4144 5.461327 AGGGCAAGATGATGGAATATGTTT 58.539 37.500 0.00 0.00 0.00 2.83
2850 4145 5.901276 AGGGCAAGATGATGGAATATGTTTT 59.099 36.000 0.00 0.00 0.00 2.43
2851 4146 7.068702 AGGGCAAGATGATGGAATATGTTTTA 58.931 34.615 0.00 0.00 0.00 1.52
2852 4147 7.731688 AGGGCAAGATGATGGAATATGTTTTAT 59.268 33.333 0.00 0.00 0.00 1.40
2853 4148 8.370182 GGGCAAGATGATGGAATATGTTTTATT 58.630 33.333 0.00 0.00 0.00 1.40
2854 4149 9.768662 GGCAAGATGATGGAATATGTTTTATTT 57.231 29.630 0.00 0.00 0.00 1.40
2881 4176 2.802787 TAATGCGTTGTTTTGGTGGG 57.197 45.000 0.08 0.00 0.00 4.61
2882 4177 0.531753 AATGCGTTGTTTTGGTGGGC 60.532 50.000 0.00 0.00 0.00 5.36
2884 4179 2.791868 GCGTTGTTTTGGTGGGCCT 61.792 57.895 4.53 0.00 35.27 5.19
2889 4184 0.827368 TGTTTTGGTGGGCCTTTCAC 59.173 50.000 4.53 1.68 35.27 3.18
2892 4187 2.285889 TTTGGTGGGCCTTTCACGGA 62.286 55.000 4.53 0.00 36.09 4.69
2925 4220 5.840243 TTTTTGCATCGATGATTCCATCT 57.160 34.783 29.20 0.00 45.37 2.90
2958 4253 6.625362 AGTGCTATAGGATCATATGTTGTCG 58.375 40.000 10.11 0.00 0.00 4.35
2959 4254 5.289675 GTGCTATAGGATCATATGTTGTCGC 59.710 44.000 10.11 4.10 0.00 5.19
2960 4255 5.185828 TGCTATAGGATCATATGTTGTCGCT 59.814 40.000 10.11 3.26 0.00 4.93
2961 4256 6.102663 GCTATAGGATCATATGTTGTCGCTT 58.897 40.000 10.11 0.00 0.00 4.68
2962 4257 6.254589 GCTATAGGATCATATGTTGTCGCTTC 59.745 42.308 10.11 0.00 0.00 3.86
2966 4269 5.882557 AGGATCATATGTTGTCGCTTCTTTT 59.117 36.000 1.90 0.00 0.00 2.27
2967 4270 7.047891 AGGATCATATGTTGTCGCTTCTTTTA 58.952 34.615 1.90 0.00 0.00 1.52
2975 4278 3.921677 TGTCGCTTCTTTTACTAGGTGG 58.078 45.455 0.00 0.00 0.00 4.61
2984 4287 1.861982 TTACTAGGTGGTGAGAGGGC 58.138 55.000 0.00 0.00 0.00 5.19
2985 4288 0.708209 TACTAGGTGGTGAGAGGGCA 59.292 55.000 0.00 0.00 0.00 5.36
2987 4290 1.949847 CTAGGTGGTGAGAGGGCACG 61.950 65.000 0.00 0.00 39.66 5.34
2989 4292 4.394712 GTGGTGAGAGGGCACGGG 62.395 72.222 0.00 0.00 39.66 5.28
2990 4293 4.631740 TGGTGAGAGGGCACGGGA 62.632 66.667 0.00 0.00 39.66 5.14
2993 4298 1.153349 GTGAGAGGGCACGGGATTC 60.153 63.158 0.00 0.00 0.00 2.52
2996 4301 1.048601 GAGAGGGCACGGGATTCATA 58.951 55.000 0.00 0.00 0.00 2.15
2998 4303 1.349026 AGAGGGCACGGGATTCATATG 59.651 52.381 0.00 0.00 0.00 1.78
3005 4310 5.010617 GGGCACGGGATTCATATGTTTTTAT 59.989 40.000 1.90 0.00 0.00 1.40
3008 4313 6.801862 GCACGGGATTCATATGTTTTTATAGC 59.198 38.462 1.90 0.00 0.00 2.97
3018 4323 2.490115 TGTTTTTATAGCCCGGTTGCTG 59.510 45.455 14.72 0.00 42.77 4.41
3030 4335 1.913317 GGTTGCTGCCGATTGATTTC 58.087 50.000 0.00 0.00 0.00 2.17
3032 4339 2.159198 GGTTGCTGCCGATTGATTTCAT 60.159 45.455 0.00 0.00 0.00 2.57
3036 4343 5.518848 TGCTGCCGATTGATTTCATAAAT 57.481 34.783 0.00 0.00 0.00 1.40
3037 4344 5.522456 TGCTGCCGATTGATTTCATAAATC 58.478 37.500 0.00 5.60 45.86 2.17
3056 4363 8.819974 CATAAATCATTGACCCAGTTAAAATGC 58.180 33.333 0.00 0.00 0.00 3.56
3059 4366 4.520874 TCATTGACCCAGTTAAAATGCGAA 59.479 37.500 0.00 0.00 0.00 4.70
3061 4368 3.215151 TGACCCAGTTAAAATGCGAACA 58.785 40.909 0.00 0.00 0.00 3.18
3062 4369 3.823873 TGACCCAGTTAAAATGCGAACAT 59.176 39.130 0.00 0.00 38.49 2.71
3080 4387 8.132362 TGCGAACATAATCCAAAATTGTATACC 58.868 33.333 0.00 0.00 0.00 2.73
3089 4396 7.786178 TCCAAAATTGTATACCTCAATCGAG 57.214 36.000 0.00 0.00 39.16 4.04
3095 4402 6.378710 TTGTATACCTCAATCGAGTGAGAG 57.621 41.667 36.91 28.52 46.76 3.20
3103 4410 2.361757 CAATCGAGTGAGAGAGCTCCAT 59.638 50.000 10.93 0.00 40.55 3.41
3107 4414 3.818210 TCGAGTGAGAGAGCTCCATAATC 59.182 47.826 10.93 0.27 40.55 1.75
3179 4486 7.461182 AATTGTTGATCCAGTTAAAATCGGA 57.539 32.000 0.00 0.00 0.00 4.55
3185 4492 3.881220 TCCAGTTAAAATCGGATGACCC 58.119 45.455 0.00 0.00 0.00 4.46
3186 4493 3.264706 TCCAGTTAAAATCGGATGACCCA 59.735 43.478 0.00 0.00 34.14 4.51
3187 4494 4.013728 CCAGTTAAAATCGGATGACCCAA 58.986 43.478 0.00 0.00 34.14 4.12
3188 4495 4.644685 CCAGTTAAAATCGGATGACCCAAT 59.355 41.667 0.00 0.00 34.14 3.16
3189 4496 5.127031 CCAGTTAAAATCGGATGACCCAATT 59.873 40.000 0.00 0.00 34.14 2.32
3190 4497 6.350949 CCAGTTAAAATCGGATGACCCAATTT 60.351 38.462 0.00 0.00 32.79 1.82
3191 4498 7.096551 CAGTTAAAATCGGATGACCCAATTTT 58.903 34.615 0.00 0.00 39.34 1.82
3192 4499 8.247562 CAGTTAAAATCGGATGACCCAATTTTA 58.752 33.333 0.00 0.00 38.19 1.52
3193 4500 8.466798 AGTTAAAATCGGATGACCCAATTTTAG 58.533 33.333 0.00 0.00 39.13 1.85
3194 4501 8.463607 GTTAAAATCGGATGACCCAATTTTAGA 58.536 33.333 0.00 0.00 39.13 2.10
3195 4502 7.660030 AAAATCGGATGACCCAATTTTAGAT 57.340 32.000 0.00 0.00 36.82 1.98
3196 4503 7.660030 AAATCGGATGACCCAATTTTAGATT 57.340 32.000 0.00 0.00 29.46 2.40
3197 4504 6.639632 ATCGGATGACCCAATTTTAGATTG 57.360 37.500 0.00 0.00 34.14 2.67
3198 4505 5.750524 TCGGATGACCCAATTTTAGATTGA 58.249 37.500 0.00 0.00 34.14 2.57
3199 4506 6.184068 TCGGATGACCCAATTTTAGATTGAA 58.816 36.000 0.00 0.00 34.14 2.69
3200 4507 6.318648 TCGGATGACCCAATTTTAGATTGAAG 59.681 38.462 0.00 0.00 34.14 3.02
3201 4508 6.318648 CGGATGACCCAATTTTAGATTGAAGA 59.681 38.462 0.00 0.00 34.14 2.87
3202 4509 7.484140 GGATGACCCAATTTTAGATTGAAGAC 58.516 38.462 0.00 0.00 34.14 3.01
3203 4510 6.834168 TGACCCAATTTTAGATTGAAGACC 57.166 37.500 0.00 0.00 0.00 3.85
3206 4513 6.794534 ACCCAATTTTAGATTGAAGACCTCT 58.205 36.000 0.00 0.00 0.00 3.69
3215 4522 9.793259 TTTAGATTGAAGACCTCTATTGTTTGT 57.207 29.630 0.00 0.00 0.00 2.83
3236 4543 5.261216 TGTGAGGCCTTAAAAATTAGGGAG 58.739 41.667 6.77 0.00 31.95 4.30
3242 4549 5.279006 GGCCTTAAAAATTAGGGAGCATAGC 60.279 44.000 0.00 0.00 31.95 2.97
3243 4550 5.301805 GCCTTAAAAATTAGGGAGCATAGCA 59.698 40.000 2.76 0.00 31.95 3.49
3246 4553 8.734386 CCTTAAAAATTAGGGAGCATAGCATAG 58.266 37.037 0.00 0.00 0.00 2.23
3247 4554 9.289782 CTTAAAAATTAGGGAGCATAGCATAGT 57.710 33.333 0.00 0.00 0.00 2.12
3250 4557 8.622948 AAAATTAGGGAGCATAGCATAGTAAC 57.377 34.615 0.00 0.00 0.00 2.50
3251 4558 7.560796 AATTAGGGAGCATAGCATAGTAACT 57.439 36.000 0.00 0.00 0.00 2.24
3252 4559 8.666129 AATTAGGGAGCATAGCATAGTAACTA 57.334 34.615 0.00 0.00 0.00 2.24
3253 4560 7.704578 TTAGGGAGCATAGCATAGTAACTAG 57.295 40.000 0.00 0.00 0.00 2.57
3254 4561 5.646215 AGGGAGCATAGCATAGTAACTAGT 58.354 41.667 0.00 0.00 0.00 2.57
3255 4562 5.478679 AGGGAGCATAGCATAGTAACTAGTG 59.521 44.000 0.00 0.00 0.00 2.74
3256 4563 5.164954 GGAGCATAGCATAGTAACTAGTGC 58.835 45.833 0.00 0.00 37.84 4.40
3257 4564 5.279006 GGAGCATAGCATAGTAACTAGTGCA 60.279 44.000 0.00 0.00 39.94 4.57
3350 4660 9.589111 GGTGTATGAAAAGTCAAACCTTTTAAA 57.411 29.630 0.00 0.00 42.98 1.52
3567 5854 5.113446 TGGAATATTTAGTTTGGCGGGTA 57.887 39.130 0.00 0.00 0.00 3.69
3589 5895 2.420687 GGGGAGATGATGGAGTGTGTTC 60.421 54.545 0.00 0.00 0.00 3.18
3649 5955 4.693566 TCGAGGTGTGATTTTGTGTTATCC 59.306 41.667 0.00 0.00 0.00 2.59
3721 6072 2.649531 TTTTCTAGGTGGTGGTGGTG 57.350 50.000 0.00 0.00 0.00 4.17
3723 6074 0.400815 TTCTAGGTGGTGGTGGTGGT 60.401 55.000 0.00 0.00 0.00 4.16
3755 6712 4.822896 GGGGTGATATGTTTTTATACGCCA 59.177 41.667 0.00 0.00 38.88 5.69
3805 6762 5.534407 GTTGGTCCGGTCAAAATTGTAAAT 58.466 37.500 12.94 0.00 0.00 1.40
3968 6930 5.969423 ACCTCAATTAATTGTGATGCCTTG 58.031 37.500 24.81 12.67 38.84 3.61
3971 6933 6.532657 CCTCAATTAATTGTGATGCCTTGAAC 59.467 38.462 24.81 0.00 38.84 3.18
4037 7004 3.308530 CTTTGAGAAATTGTTGACCCGC 58.691 45.455 0.00 0.00 0.00 6.13
4059 7026 5.049474 CGCTCAAAATCGGATGATCCAATTA 60.049 40.000 12.67 0.00 35.91 1.40
4136 7115 6.895782 AGAGGATATAGTAGTAGCTAGGCAG 58.104 44.000 0.00 0.00 0.00 4.85
4202 7191 1.238439 ATTCAAACGGGTCTGTGCTG 58.762 50.000 0.00 0.00 0.00 4.41
4206 7195 0.107410 AAACGGGTCTGTGCTGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
4209 7198 1.021202 CGGGTCTGTGCTGTTGAAAA 58.979 50.000 0.00 0.00 0.00 2.29
4228 7217 9.900264 GTTGAAAACTAAATAACACTTTTGCAG 57.100 29.630 0.00 0.00 45.32 4.41
4229 7218 9.646427 TTGAAAACTAAATAACACTTTTGCAGT 57.354 25.926 0.00 0.00 35.35 4.40
4237 7226 3.698029 ACACTTTTGCAGTCACACATC 57.302 42.857 0.00 0.00 30.92 3.06
4243 7232 1.207593 GCAGTCACACATCGGCAAC 59.792 57.895 0.00 0.00 0.00 4.17
4267 7256 5.048991 CCACTCGGTTTGCTACTTAATTGTT 60.049 40.000 0.00 0.00 0.00 2.83
4352 7347 3.042887 GTCAAATTTCAACACTGCGGTC 58.957 45.455 0.00 0.00 0.00 4.79
4439 7434 2.865598 CGCAGATCTCCTCGCCCAT 61.866 63.158 0.00 0.00 0.00 4.00
4488 7483 2.876550 GGCCTAATAATCAACACGTCCC 59.123 50.000 0.00 0.00 0.00 4.46
4496 7491 2.631160 TCAACACGTCCCAAGACATT 57.369 45.000 0.00 0.00 43.73 2.71
4509 7504 1.293062 AGACATTGAGGGCATGGAGT 58.707 50.000 0.00 0.00 0.00 3.85
4634 7632 1.176527 GCAGCTGTTTGGATTGGCTA 58.823 50.000 16.64 0.00 0.00 3.93
4698 7696 1.302431 CTGGTGGGCATCGACACAA 60.302 57.895 6.27 0.00 39.31 3.33
4715 7713 4.451900 ACACAAACGAGTTCTTGGAGATT 58.548 39.130 0.00 0.00 0.00 2.40
4795 7793 0.667487 CACGATTGCGAGTCCAGTGT 60.667 55.000 0.00 0.00 41.64 3.55
4889 7887 3.005539 AGGCATCCGTCTGTGGCT 61.006 61.111 0.00 0.00 45.16 4.75
4919 7917 2.109126 GCACTGCGGATGGAACTCC 61.109 63.158 0.00 0.00 0.00 3.85
4976 7974 2.100631 CAGACCATTGTCCGGCGAC 61.101 63.158 9.30 5.41 42.81 5.19
5040 8038 1.272554 GGTTAGGGTGGAGGTGGAGG 61.273 65.000 0.00 0.00 0.00 4.30
5099 8097 4.229123 ACAAGACTCATGGATGGAAAGGAT 59.771 41.667 0.00 0.00 0.00 3.24
5111 8109 4.666412 TGGAAAGGATGGTGAAATGGTA 57.334 40.909 0.00 0.00 0.00 3.25
5127 8125 9.003658 GTGAAATGGTAAGAGAAAGAATGAGAA 57.996 33.333 0.00 0.00 0.00 2.87
5141 8139 2.793288 TGAGAAATCTGAGGCATGCA 57.207 45.000 21.36 0.00 0.00 3.96
5459 8458 5.107491 GGTTGCAAGAAAGATTTTTAAGGCG 60.107 40.000 0.00 0.00 0.00 5.52
5510 8509 7.230309 AGACAGATTCTGATCAGATCAACGATA 59.770 37.037 25.64 9.01 39.11 2.92
5529 8528 4.846677 CGATAGATCAGTGGACGAAATACG 59.153 45.833 0.00 0.00 43.99 3.06
5593 8596 7.340999 GGGGCTATCCAAATAAACTAGTTTTCA 59.659 37.037 25.07 9.62 37.22 2.69
5844 10275 2.391879 GTGATACTATCGCCACGGTTC 58.608 52.381 0.00 0.00 33.78 3.62
5901 10332 6.550108 ACGAGATTTAATAGGCCTCAGACTTA 59.450 38.462 9.68 0.00 0.00 2.24
6027 10458 7.665690 AGATTCAATGTATAGAGCGTTGATCT 58.334 34.615 0.00 0.00 40.29 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.947180 GGCGACTGGCAACGTCTAAA 60.947 55.000 13.51 0.00 46.16 1.85
2 3 2.260434 GGCGACTGGCAACGTCTA 59.740 61.111 13.51 0.00 46.16 2.59
12 13 2.328099 GGTTCTTGCCTGGCGACTG 61.328 63.158 14.98 1.17 0.00 3.51
13 14 2.032681 GGTTCTTGCCTGGCGACT 59.967 61.111 14.98 0.00 0.00 4.18
14 15 2.281484 TGGTTCTTGCCTGGCGAC 60.281 61.111 14.98 9.68 0.00 5.19
15 16 2.281484 GTGGTTCTTGCCTGGCGA 60.281 61.111 14.98 11.82 0.00 5.54
16 17 2.594303 TGTGGTTCTTGCCTGGCG 60.594 61.111 14.98 0.00 0.00 5.69
17 18 2.564721 GGTGTGGTTCTTGCCTGGC 61.565 63.158 12.87 12.87 0.00 4.85
18 19 1.152777 TGGTGTGGTTCTTGCCTGG 60.153 57.895 0.00 0.00 0.00 4.45
19 20 0.751277 TGTGGTGTGGTTCTTGCCTG 60.751 55.000 0.00 0.00 0.00 4.85
20 21 0.033601 TTGTGGTGTGGTTCTTGCCT 60.034 50.000 0.00 0.00 0.00 4.75
42 43 2.697751 GCAAGGAGGAGATAGAGAGCAA 59.302 50.000 0.00 0.00 0.00 3.91
43 44 2.315176 GCAAGGAGGAGATAGAGAGCA 58.685 52.381 0.00 0.00 0.00 4.26
80 81 4.258543 CCACTATGGTTTAGAGCCGAAAA 58.741 43.478 0.00 0.00 31.35 2.29
81 82 3.370103 CCCACTATGGTTTAGAGCCGAAA 60.370 47.826 0.00 0.00 35.17 3.46
83 84 1.760613 CCCACTATGGTTTAGAGCCGA 59.239 52.381 0.00 0.00 35.17 5.54
84 85 1.760613 TCCCACTATGGTTTAGAGCCG 59.239 52.381 0.00 0.00 35.17 5.52
85 86 3.496870 CCATCCCACTATGGTTTAGAGCC 60.497 52.174 0.00 0.00 41.38 4.70
90 91 2.441750 GAGGCCATCCCACTATGGTTTA 59.558 50.000 5.01 0.00 46.93 2.01
93 94 0.029681 AGAGGCCATCCCACTATGGT 60.030 55.000 5.01 0.00 46.93 3.55
97 98 1.457643 CGGAGAGGCCATCCCACTA 60.458 63.158 18.65 0.00 34.39 2.74
98 99 2.765807 CGGAGAGGCCATCCCACT 60.766 66.667 18.65 2.45 37.22 4.00
105 106 1.868713 TTTACATACCGGAGAGGCCA 58.131 50.000 9.46 0.00 46.52 5.36
111 112 4.120589 GCTCCTTCTTTTACATACCGGAG 58.879 47.826 9.46 0.00 39.73 4.63
113 114 4.120589 GAGCTCCTTCTTTTACATACCGG 58.879 47.826 0.87 0.00 0.00 5.28
114 115 5.012328 AGAGCTCCTTCTTTTACATACCG 57.988 43.478 10.93 0.00 0.00 4.02
165 166 0.382515 CCTATATCCGGCTAGCTCGC 59.617 60.000 15.72 0.62 0.00 5.03
166 167 0.382515 GCCTATATCCGGCTAGCTCG 59.617 60.000 15.72 15.83 44.17 5.03
201 202 4.388499 GGTGCCGGCTCCGAAGAA 62.388 66.667 30.20 2.77 42.83 2.52
214 215 0.244450 CATGACAATGGTGGTGGTGC 59.756 55.000 0.00 0.00 0.00 5.01
216 217 0.899717 GGCATGACAATGGTGGTGGT 60.900 55.000 0.00 0.00 34.09 4.16
233 234 4.408821 TGGACGGGTGCAGATGGC 62.409 66.667 0.00 0.00 45.13 4.40
247 248 2.203480 GTTGTTGGCCAGCCTGGA 60.203 61.111 16.85 0.00 40.96 3.86
248 249 3.673484 CGTTGTTGGCCAGCCTGG 61.673 66.667 17.83 6.32 41.55 4.45
249 250 2.906897 ACGTTGTTGGCCAGCCTG 60.907 61.111 17.83 9.07 36.94 4.85
262 263 1.156736 CGGATTTGCTGGAAGACGTT 58.843 50.000 0.00 0.00 34.07 3.99
263 264 1.298859 GCGGATTTGCTGGAAGACGT 61.299 55.000 0.00 0.00 34.07 4.34
264 265 1.425428 GCGGATTTGCTGGAAGACG 59.575 57.895 0.00 0.00 34.07 4.18
269 270 3.216985 TTGGGGCGGATTTGCTGGA 62.217 57.895 0.00 0.00 34.52 3.86
272 273 1.978617 CACTTGGGGCGGATTTGCT 60.979 57.895 0.00 0.00 34.52 3.91
275 276 0.684153 CCATCACTTGGGGCGGATTT 60.684 55.000 0.00 0.00 42.33 2.17
286 287 0.247736 GTCTCCAGCGACCATCACTT 59.752 55.000 0.00 0.00 0.00 3.16
294 295 0.175760 TGGCTTATGTCTCCAGCGAC 59.824 55.000 0.00 0.00 34.09 5.19
295 296 1.123077 ATGGCTTATGTCTCCAGCGA 58.877 50.000 0.00 0.00 34.09 4.93
305 306 2.164219 ACCTTCGCAAACATGGCTTATG 59.836 45.455 0.00 0.84 42.68 1.90
306 307 2.446435 ACCTTCGCAAACATGGCTTAT 58.554 42.857 0.00 0.00 0.00 1.73
307 308 1.904287 ACCTTCGCAAACATGGCTTA 58.096 45.000 0.00 0.00 0.00 3.09
320 336 3.411351 CCACCGCGTCAACCTTCG 61.411 66.667 4.92 0.00 0.00 3.79
322 338 2.590575 CACCACCGCGTCAACCTT 60.591 61.111 4.92 0.00 0.00 3.50
331 347 1.175983 TCAAATTCCACCACCACCGC 61.176 55.000 0.00 0.00 0.00 5.68
335 351 1.480312 CCCAGTCAAATTCCACCACCA 60.480 52.381 0.00 0.00 0.00 4.17
338 354 0.541764 GCCCCAGTCAAATTCCACCA 60.542 55.000 0.00 0.00 0.00 4.17
340 356 0.603065 GTGCCCCAGTCAAATTCCAC 59.397 55.000 0.00 0.00 0.00 4.02
341 357 0.541764 GGTGCCCCAGTCAAATTCCA 60.542 55.000 0.00 0.00 0.00 3.53
363 379 2.804090 GAGTTGGCGACGTCGTCC 60.804 66.667 36.46 33.48 44.42 4.79
364 380 2.804090 GGAGTTGGCGACGTCGTC 60.804 66.667 33.98 33.98 45.40 4.20
399 415 2.254546 TCTCCATGTTCGCAACAGTT 57.745 45.000 7.58 0.00 45.95 3.16
400 416 2.254546 TTCTCCATGTTCGCAACAGT 57.745 45.000 7.58 0.00 45.95 3.55
401 417 3.624326 TTTTCTCCATGTTCGCAACAG 57.376 42.857 7.58 1.79 45.95 3.16
402 418 3.380004 ACTTTTTCTCCATGTTCGCAACA 59.620 39.130 4.56 4.56 46.94 3.33
404 420 5.049680 GTCTACTTTTTCTCCATGTTCGCAA 60.050 40.000 0.00 0.00 0.00 4.85
405 421 4.451096 GTCTACTTTTTCTCCATGTTCGCA 59.549 41.667 0.00 0.00 0.00 5.10
406 422 4.142881 GGTCTACTTTTTCTCCATGTTCGC 60.143 45.833 0.00 0.00 0.00 4.70
408 424 6.655003 TCATGGTCTACTTTTTCTCCATGTTC 59.345 38.462 17.55 0.00 46.83 3.18
413 429 6.003950 CCTTTCATGGTCTACTTTTTCTCCA 58.996 40.000 0.00 0.00 0.00 3.86
414 430 5.106118 GCCTTTCATGGTCTACTTTTTCTCC 60.106 44.000 0.00 0.00 0.00 3.71
427 444 3.064324 GCGGCAGCCTTTCATGGT 61.064 61.111 10.54 0.00 37.42 3.55
479 496 2.031919 CAGTTGTGTAGGCCGGCA 59.968 61.111 30.85 5.28 0.00 5.69
493 510 1.928706 GAAGCGAGCGAGTCTCCAGT 61.929 60.000 0.00 0.00 38.62 4.00
494 511 1.226547 GAAGCGAGCGAGTCTCCAG 60.227 63.158 0.00 0.00 38.62 3.86
498 515 2.177038 CGTGAAGCGAGCGAGTCT 59.823 61.111 0.00 0.00 44.77 3.24
499 516 2.876645 CCGTGAAGCGAGCGAGTC 60.877 66.667 0.00 0.00 44.77 3.36
519 537 0.460284 GATGGTCACTGTGGCCTACG 60.460 60.000 29.60 0.43 44.07 3.51
529 547 2.670148 GCGGGGGAAGATGGTCACT 61.670 63.158 0.00 0.00 0.00 3.41
536 554 0.991920 TTTTGAGAGCGGGGGAAGAT 59.008 50.000 0.00 0.00 0.00 2.40
543 561 0.821711 TGGTTGGTTTTGAGAGCGGG 60.822 55.000 0.00 0.00 0.00 6.13
545 563 1.879380 TCATGGTTGGTTTTGAGAGCG 59.121 47.619 0.00 0.00 0.00 5.03
548 566 4.023279 CACGAATCATGGTTGGTTTTGAGA 60.023 41.667 3.29 0.00 0.00 3.27
550 568 3.551863 GCACGAATCATGGTTGGTTTTGA 60.552 43.478 3.29 0.00 0.00 2.69
555 573 1.812571 GAAGCACGAATCATGGTTGGT 59.187 47.619 0.00 0.00 37.88 3.67
579 597 3.780173 GAGAGCAGCCTCCGCCTT 61.780 66.667 0.00 0.00 38.96 4.35
581 599 3.805891 GATGAGAGCAGCCTCCGCC 62.806 68.421 8.05 0.00 38.96 6.13
582 600 2.280052 GATGAGAGCAGCCTCCGC 60.280 66.667 8.05 0.00 38.96 5.54
597 615 3.450457 GGGATATGCTTCATCGAGAGGAT 59.550 47.826 0.00 0.00 35.09 3.24
598 616 2.828520 GGGATATGCTTCATCGAGAGGA 59.171 50.000 0.00 0.00 0.00 3.71
603 621 1.546029 CGGAGGGATATGCTTCATCGA 59.454 52.381 8.58 0.00 0.00 3.59
606 624 1.905215 CCTCGGAGGGATATGCTTCAT 59.095 52.381 16.59 0.00 0.00 2.57
646 664 0.535780 TTCCTGTGTCCAGCAGCAAG 60.536 55.000 0.00 0.00 37.38 4.01
654 672 2.172505 ACAACATGTCTTCCTGTGTCCA 59.827 45.455 0.00 0.00 0.00 4.02
660 678 2.566833 TCCCACAACATGTCTTCCTG 57.433 50.000 0.00 0.00 0.00 3.86
692 711 0.311165 CTAGTCTATCACCGGCCGTG 59.689 60.000 26.12 21.41 44.50 4.94
693 712 0.822532 CCTAGTCTATCACCGGCCGT 60.823 60.000 26.12 9.63 0.00 5.68
694 713 0.822532 ACCTAGTCTATCACCGGCCG 60.823 60.000 21.04 21.04 0.00 6.13
701 720 9.179909 GCTATGCTATTCTAACCTAGTCTATCA 57.820 37.037 0.00 0.00 0.00 2.15
711 730 5.480772 TGGACTAGGCTATGCTATTCTAACC 59.519 44.000 0.00 0.00 0.00 2.85
712 731 6.209788 AGTGGACTAGGCTATGCTATTCTAAC 59.790 42.308 0.00 0.00 0.00 2.34
776 795 6.841443 ACAAATCGAACAAAATTCATGCAA 57.159 29.167 0.00 0.00 0.00 4.08
777 796 6.478016 TCAACAAATCGAACAAAATTCATGCA 59.522 30.769 0.00 0.00 0.00 3.96
778 797 6.787043 GTCAACAAATCGAACAAAATTCATGC 59.213 34.615 0.00 0.00 0.00 4.06
780 799 8.592105 ATGTCAACAAATCGAACAAAATTCAT 57.408 26.923 0.00 0.00 0.00 2.57
781 800 9.689976 ATATGTCAACAAATCGAACAAAATTCA 57.310 25.926 0.00 0.00 0.00 2.57
794 1033 9.679661 TGGACACTAATACATATGTCAACAAAT 57.320 29.630 12.68 0.00 42.66 2.32
806 1045 8.005388 AGTACTAGTCCATGGACACTAATACAT 58.995 37.037 39.38 21.77 46.76 2.29
808 1047 7.501559 TGAGTACTAGTCCATGGACACTAATAC 59.498 40.741 39.38 30.14 46.76 1.89
809 1048 7.501559 GTGAGTACTAGTCCATGGACACTAATA 59.498 40.741 39.38 24.24 46.76 0.98
814 1053 3.181499 CGTGAGTACTAGTCCATGGACAC 60.181 52.174 39.38 29.50 46.76 3.67
822 1061 2.863137 CGTAGACCGTGAGTACTAGTCC 59.137 54.545 0.00 0.00 31.67 3.85
827 1066 2.706339 ATCCGTAGACCGTGAGTACT 57.294 50.000 0.00 0.00 33.66 2.73
830 1069 2.996249 TCTATCCGTAGACCGTGAGT 57.004 50.000 0.00 0.00 32.04 3.41
835 1074 2.031069 CACCACATCTATCCGTAGACCG 60.031 54.545 0.00 0.00 39.66 4.79
837 1076 3.884091 AGACACCACATCTATCCGTAGAC 59.116 47.826 0.00 0.00 39.66 2.59
840 1079 2.956333 CCAGACACCACATCTATCCGTA 59.044 50.000 0.00 0.00 0.00 4.02
841 1080 1.757118 CCAGACACCACATCTATCCGT 59.243 52.381 0.00 0.00 0.00 4.69
846 1085 4.504864 CCTTCAAACCAGACACCACATCTA 60.505 45.833 0.00 0.00 0.00 1.98
847 1086 3.480470 CTTCAAACCAGACACCACATCT 58.520 45.455 0.00 0.00 0.00 2.90
853 1092 2.222027 CAGACCTTCAAACCAGACACC 58.778 52.381 0.00 0.00 0.00 4.16
873 1112 6.542370 TGTAAGAGTTAGGGCATCTTTAATGC 59.458 38.462 1.40 1.40 43.85 3.56
876 1115 7.253905 ACTGTAAGAGTTAGGGCATCTTTAA 57.746 36.000 0.00 0.00 37.43 1.52
877 1116 6.869206 ACTGTAAGAGTTAGGGCATCTTTA 57.131 37.500 0.00 0.00 37.43 1.85
878 1117 5.763876 ACTGTAAGAGTTAGGGCATCTTT 57.236 39.130 0.00 0.00 37.43 2.52
879 1118 5.763876 AACTGTAAGAGTTAGGGCATCTT 57.236 39.130 0.00 0.00 43.54 2.40
880 1119 5.763876 AAACTGTAAGAGTTAGGGCATCT 57.236 39.130 0.00 0.00 44.68 2.90
881 1120 6.875076 TCTAAACTGTAAGAGTTAGGGCATC 58.125 40.000 0.00 0.00 44.68 3.91
886 1125 7.039223 TGTTCCCTCTAAACTGTAAGAGTTAGG 60.039 40.741 15.12 10.97 44.68 2.69
903 1142 3.103742 GGAGAGAGATGTTGTTCCCTCT 58.896 50.000 0.00 0.00 38.57 3.69
939 1178 1.765314 GGATGCAGAGGAGGAAAGCTA 59.235 52.381 0.00 0.00 0.00 3.32
1252 1495 0.721718 GCGCAGTTCTTATTCAGCGT 59.278 50.000 0.30 0.00 46.09 5.07
1516 1772 7.083875 TCTAAACTCCAAACAAAGAACACAG 57.916 36.000 0.00 0.00 0.00 3.66
1538 1794 5.625656 CGAACTGAAAAAGAGCTATCCCTCT 60.626 44.000 0.00 0.00 43.81 3.69
1543 1799 4.929808 TGGACGAACTGAAAAAGAGCTATC 59.070 41.667 0.00 0.00 0.00 2.08
1544 1800 4.894784 TGGACGAACTGAAAAAGAGCTAT 58.105 39.130 0.00 0.00 0.00 2.97
1587 1850 3.434641 CAGACATCATTGCGGATATCCAC 59.565 47.826 21.70 12.70 35.14 4.02
1635 1908 3.694535 ACGAGAACGAACCTAGCTATG 57.305 47.619 0.00 0.00 42.66 2.23
1636 1909 5.124457 TGTTTACGAGAACGAACCTAGCTAT 59.876 40.000 0.00 0.00 42.66 2.97
1656 1929 2.476821 ACGCTAGTTACGCTGTTGTTT 58.523 42.857 0.00 0.00 0.00 2.83
1671 1958 1.617322 ATCCGGATCTAGCAACGCTA 58.383 50.000 12.38 0.00 40.44 4.26
1688 1976 3.615496 ACGCTGTTGTGTTACCGATAATC 59.385 43.478 0.00 0.00 32.25 1.75
1696 1984 2.542595 ACTAGCAACGCTGTTGTGTTAC 59.457 45.455 18.15 5.89 44.09 2.50
1718 2187 8.254508 TCAGGTTGTACTTTAAAAATGCAAGTT 58.745 29.630 0.00 0.00 32.88 2.66
1799 2306 4.402474 CCTTATCTTTGACCACCATTTCCC 59.598 45.833 0.00 0.00 0.00 3.97
1803 2310 5.393866 ACAACCTTATCTTTGACCACCATT 58.606 37.500 0.00 0.00 0.00 3.16
1806 2313 6.002082 ACTAACAACCTTATCTTTGACCACC 58.998 40.000 0.00 0.00 0.00 4.61
1827 2342 2.128535 TGAAGTTTGGGGGTCACACTA 58.871 47.619 0.00 0.00 35.53 2.74
1863 2393 3.632604 GTGAGAACGGAGATGGACTGATA 59.367 47.826 0.00 0.00 0.00 2.15
1892 2422 0.175073 GAGGATCGTACCACCCACAC 59.825 60.000 0.00 0.00 0.00 3.82
1932 2462 7.517614 TTGTGAATGTACCTGCTTCATTTTA 57.482 32.000 0.00 0.00 32.90 1.52
1960 2490 9.620660 GATCGTGTGTTACCTATTTCAATTTTT 57.379 29.630 0.00 0.00 0.00 1.94
1961 2491 9.010029 AGATCGTGTGTTACCTATTTCAATTTT 57.990 29.630 0.00 0.00 0.00 1.82
1962 2492 8.561738 AGATCGTGTGTTACCTATTTCAATTT 57.438 30.769 0.00 0.00 0.00 1.82
1963 2493 9.095065 GTAGATCGTGTGTTACCTATTTCAATT 57.905 33.333 0.00 0.00 0.00 2.32
1964 2494 7.434307 CGTAGATCGTGTGTTACCTATTTCAAT 59.566 37.037 0.00 0.00 34.52 2.57
2001 2546 2.836154 GGAGTTGGTGGACTGCCA 59.164 61.111 0.00 0.00 43.47 4.92
2002 2547 2.358737 CGGAGTTGGTGGACTGCC 60.359 66.667 0.00 0.00 34.86 4.85
2003 2548 3.050275 GCGGAGTTGGTGGACTGC 61.050 66.667 0.00 0.00 34.97 4.40
2004 2549 2.709125 TTCGCGGAGTTGGTGGACTG 62.709 60.000 6.13 0.00 0.00 3.51
2005 2550 1.827399 ATTCGCGGAGTTGGTGGACT 61.827 55.000 6.13 0.00 0.00 3.85
2006 2551 0.953960 AATTCGCGGAGTTGGTGGAC 60.954 55.000 6.13 0.00 0.00 4.02
2007 2552 0.250553 AAATTCGCGGAGTTGGTGGA 60.251 50.000 6.13 0.00 0.00 4.02
2008 2553 0.168128 GAAATTCGCGGAGTTGGTGG 59.832 55.000 4.07 0.00 0.00 4.61
2009 2554 1.156736 AGAAATTCGCGGAGTTGGTG 58.843 50.000 4.07 0.00 0.00 4.17
2011 2556 3.259064 TCTTAGAAATTCGCGGAGTTGG 58.741 45.455 4.07 0.00 0.00 3.77
2014 2559 4.363999 CAGATCTTAGAAATTCGCGGAGT 58.636 43.478 6.13 0.00 0.00 3.85
2015 2560 3.183373 GCAGATCTTAGAAATTCGCGGAG 59.817 47.826 6.13 0.00 0.00 4.63
2016 2561 3.123804 GCAGATCTTAGAAATTCGCGGA 58.876 45.455 6.13 0.00 0.00 5.54
2017 2562 2.097202 CGCAGATCTTAGAAATTCGCGG 60.097 50.000 6.13 0.00 36.75 6.46
2018 2563 2.097202 CCGCAGATCTTAGAAATTCGCG 60.097 50.000 0.00 0.00 39.87 5.87
2019 2564 3.123804 TCCGCAGATCTTAGAAATTCGC 58.876 45.455 0.00 0.00 0.00 4.70
2020 2565 3.183373 GCTCCGCAGATCTTAGAAATTCG 59.817 47.826 0.00 0.00 0.00 3.34
2021 2566 4.025313 GTGCTCCGCAGATCTTAGAAATTC 60.025 45.833 0.00 0.00 40.08 2.17
2022 2567 3.873952 GTGCTCCGCAGATCTTAGAAATT 59.126 43.478 0.00 0.00 40.08 1.82
2023 2568 3.118629 TGTGCTCCGCAGATCTTAGAAAT 60.119 43.478 0.00 0.00 40.08 2.17
2024 2569 2.233676 TGTGCTCCGCAGATCTTAGAAA 59.766 45.455 0.00 0.00 40.08 2.52
2025 2570 1.824852 TGTGCTCCGCAGATCTTAGAA 59.175 47.619 0.00 0.00 40.08 2.10
2026 2571 1.474330 TGTGCTCCGCAGATCTTAGA 58.526 50.000 0.00 0.00 40.08 2.10
2027 2572 2.200067 CTTGTGCTCCGCAGATCTTAG 58.800 52.381 0.00 0.00 40.08 2.18
2028 2573 1.134699 CCTTGTGCTCCGCAGATCTTA 60.135 52.381 0.00 0.00 40.08 2.10
2029 2574 0.392193 CCTTGTGCTCCGCAGATCTT 60.392 55.000 0.00 0.00 40.08 2.40
2030 2575 1.220206 CCTTGTGCTCCGCAGATCT 59.780 57.895 0.00 0.00 40.08 2.75
2031 2576 1.086634 GTCCTTGTGCTCCGCAGATC 61.087 60.000 0.00 0.00 40.08 2.75
2032 2577 1.078848 GTCCTTGTGCTCCGCAGAT 60.079 57.895 0.00 0.00 40.08 2.90
2033 2578 2.159819 GAGTCCTTGTGCTCCGCAGA 62.160 60.000 0.00 0.00 40.08 4.26
2034 2579 1.739562 GAGTCCTTGTGCTCCGCAG 60.740 63.158 0.00 0.00 40.08 5.18
2035 2580 2.343758 GAGTCCTTGTGCTCCGCA 59.656 61.111 0.00 0.00 35.60 5.69
2036 2581 2.435059 GGAGTCCTTGTGCTCCGC 60.435 66.667 0.41 0.00 41.40 5.54
2039 2584 2.435059 GCGGGAGTCCTTGTGCTC 60.435 66.667 9.58 0.00 0.00 4.26
2040 2585 2.129555 ATTGCGGGAGTCCTTGTGCT 62.130 55.000 9.58 0.00 0.00 4.40
2041 2586 1.244019 AATTGCGGGAGTCCTTGTGC 61.244 55.000 9.58 9.00 0.00 4.57
2042 2587 2.107950 TAATTGCGGGAGTCCTTGTG 57.892 50.000 9.58 0.00 0.00 3.33
2043 2588 2.871096 TTAATTGCGGGAGTCCTTGT 57.129 45.000 9.58 0.00 0.00 3.16
2044 2589 2.287915 CGATTAATTGCGGGAGTCCTTG 59.712 50.000 9.58 3.25 0.00 3.61
2045 2590 2.169769 TCGATTAATTGCGGGAGTCCTT 59.830 45.455 9.58 0.00 0.00 3.36
2046 2591 1.760613 TCGATTAATTGCGGGAGTCCT 59.239 47.619 9.58 0.00 0.00 3.85
2047 2592 2.234300 TCGATTAATTGCGGGAGTCC 57.766 50.000 0.00 0.00 0.00 3.85
2048 2593 5.408604 ACAATATCGATTAATTGCGGGAGTC 59.591 40.000 17.12 0.00 36.72 3.36
2049 2594 5.305585 ACAATATCGATTAATTGCGGGAGT 58.694 37.500 17.12 0.00 36.72 3.85
2050 2595 5.862924 ACAATATCGATTAATTGCGGGAG 57.137 39.130 17.12 0.00 36.72 4.30
2051 2596 5.760743 TCAACAATATCGATTAATTGCGGGA 59.239 36.000 17.12 11.09 36.72 5.14
2052 2597 5.996219 TCAACAATATCGATTAATTGCGGG 58.004 37.500 17.12 9.46 36.72 6.13
2053 2598 9.605955 TTAATCAACAATATCGATTAATTGCGG 57.394 29.630 17.12 11.33 36.93 5.69
2134 2680 5.163550 TGGTTGTTCGTAGACCATAGATGAG 60.164 44.000 0.00 0.00 38.47 2.90
2141 2687 4.015872 ACATTGGTTGTTCGTAGACCAT 57.984 40.909 0.00 0.00 42.59 3.55
2176 3409 5.446073 GCTACGCTCATTTCTTGTAACTTCC 60.446 44.000 0.00 0.00 0.00 3.46
2177 3410 5.348997 AGCTACGCTCATTTCTTGTAACTTC 59.651 40.000 0.00 0.00 30.62 3.01
2211 3444 1.693606 CAACCACTCCCCTTGCAAAAT 59.306 47.619 0.00 0.00 0.00 1.82
2213 3446 0.032615 ACAACCACTCCCCTTGCAAA 60.033 50.000 0.00 0.00 0.00 3.68
2229 3462 0.820074 CCAACGGCTGGGTTGTACAA 60.820 55.000 3.59 3.59 44.48 2.41
2239 3472 0.535102 AGGACTTGAACCAACGGCTG 60.535 55.000 0.00 0.00 0.00 4.85
2240 3473 0.250338 GAGGACTTGAACCAACGGCT 60.250 55.000 0.00 0.00 0.00 5.52
2244 3477 0.599204 TCGCGAGGACTTGAACCAAC 60.599 55.000 3.71 0.00 0.00 3.77
2292 3527 9.744468 AGTAAAGTTAGCCTACAACAATTTTTG 57.256 29.630 2.77 2.77 0.00 2.44
2293 3528 9.744468 CAGTAAAGTTAGCCTACAACAATTTTT 57.256 29.630 0.00 0.00 0.00 1.94
2309 3544 3.521560 CGCTCTGGATGCAGTAAAGTTA 58.478 45.455 14.43 0.00 0.00 2.24
2310 3545 2.350522 CGCTCTGGATGCAGTAAAGTT 58.649 47.619 14.43 0.00 0.00 2.66
2321 3556 1.895131 ACCAAAATTTGCGCTCTGGAT 59.105 42.857 9.73 0.00 0.00 3.41
2324 3559 2.741612 TGAACCAAAATTTGCGCTCTG 58.258 42.857 9.73 0.00 0.00 3.35
2325 3560 3.665745 ATGAACCAAAATTTGCGCTCT 57.334 38.095 9.73 0.00 0.00 4.09
2376 3611 0.034186 TGAAATGCAGTAGGGGCAGG 60.034 55.000 0.00 0.00 45.68 4.85
2379 3614 2.164422 GACTTTGAAATGCAGTAGGGGC 59.836 50.000 0.00 0.00 0.00 5.80
2394 3629 9.965824 ATTATAGTGTTTGTTTTCTGGACTTTG 57.034 29.630 0.00 0.00 0.00 2.77
2418 3653 9.875691 AAAGTCTCTTAGTGCAAAAAGAAAATT 57.124 25.926 11.84 3.73 31.61 1.82
2419 3654 9.875691 AAAAGTCTCTTAGTGCAAAAAGAAAAT 57.124 25.926 11.84 0.00 31.61 1.82
2420 3655 9.705290 AAAAAGTCTCTTAGTGCAAAAAGAAAA 57.295 25.926 11.84 2.96 31.61 2.29
2426 3661 9.915629 TGTTTTAAAAAGTCTCTTAGTGCAAAA 57.084 25.926 1.31 0.00 0.00 2.44
2428 3663 9.515020 CATGTTTTAAAAAGTCTCTTAGTGCAA 57.485 29.630 1.31 0.00 0.00 4.08
2429 3664 8.134895 CCATGTTTTAAAAAGTCTCTTAGTGCA 58.865 33.333 1.31 0.00 0.00 4.57
2430 3665 8.135529 ACCATGTTTTAAAAAGTCTCTTAGTGC 58.864 33.333 1.31 0.00 0.00 4.40
2477 3763 9.823647 CTTCTAGTAGTACATGAATTTGGTCAT 57.176 33.333 0.00 0.00 38.84 3.06
2582 3870 9.581099 GTTTGACTTTTCAGAAAACCAATAGAA 57.419 29.630 14.68 3.51 31.71 2.10
2584 3872 8.925161 TGTTTGACTTTTCAGAAAACCAATAG 57.075 30.769 14.68 4.69 33.10 1.73
2595 3883 9.023967 CCAACTTAAAGATGTTTGACTTTTCAG 57.976 33.333 0.00 0.00 37.49 3.02
2650 3939 9.658799 CTAGTGACACCTATTTGATATTATGGG 57.341 37.037 0.84 0.00 0.00 4.00
2665 3954 4.096681 TCATGATGAACCTAGTGACACCT 58.903 43.478 0.84 0.00 0.00 4.00
2669 3958 7.615582 TTCATTTCATGATGAACCTAGTGAC 57.384 36.000 7.48 0.00 40.20 3.67
2722 4011 8.883731 AGTCTAGAACCAAAAATATTGACATCG 58.116 33.333 0.00 0.00 0.00 3.84
2786 4081 9.813826 ATATTCCCTCAGTTCCAATATTTAAGG 57.186 33.333 0.00 0.00 0.00 2.69
2791 4086 8.067488 ACCAAATATTCCCTCAGTTCCAATATT 58.933 33.333 0.00 0.00 33.15 1.28
2794 4089 5.842339 ACCAAATATTCCCTCAGTTCCAAT 58.158 37.500 0.00 0.00 0.00 3.16
2795 4090 5.269554 ACCAAATATTCCCTCAGTTCCAA 57.730 39.130 0.00 0.00 0.00 3.53
2798 4093 5.624509 GCCAAACCAAATATTCCCTCAGTTC 60.625 44.000 0.00 0.00 0.00 3.01
2821 4116 0.883814 CCATCATCTTGCCCTCTCGC 60.884 60.000 0.00 0.00 0.00 5.03
2823 4118 3.505480 ATTCCATCATCTTGCCCTCTC 57.495 47.619 0.00 0.00 0.00 3.20
2826 4121 4.736611 ACATATTCCATCATCTTGCCCT 57.263 40.909 0.00 0.00 0.00 5.19
2827 4122 5.796424 AAACATATTCCATCATCTTGCCC 57.204 39.130 0.00 0.00 0.00 5.36
2828 4123 9.768662 AAATAAAACATATTCCATCATCTTGCC 57.231 29.630 0.00 0.00 0.00 4.52
2854 4149 8.926710 CCACCAAAACAACGCATTATAAATAAA 58.073 29.630 0.00 0.00 0.00 1.40
2855 4150 7.545965 CCCACCAAAACAACGCATTATAAATAA 59.454 33.333 0.00 0.00 0.00 1.40
2856 4151 7.036220 CCCACCAAAACAACGCATTATAAATA 58.964 34.615 0.00 0.00 0.00 1.40
2857 4152 5.872070 CCCACCAAAACAACGCATTATAAAT 59.128 36.000 0.00 0.00 0.00 1.40
2858 4153 5.230942 CCCACCAAAACAACGCATTATAAA 58.769 37.500 0.00 0.00 0.00 1.40
2859 4154 4.810790 CCCACCAAAACAACGCATTATAA 58.189 39.130 0.00 0.00 0.00 0.98
2860 4155 3.367498 GCCCACCAAAACAACGCATTATA 60.367 43.478 0.00 0.00 0.00 0.98
2861 4156 2.611722 GCCCACCAAAACAACGCATTAT 60.612 45.455 0.00 0.00 0.00 1.28
2862 4157 1.269831 GCCCACCAAAACAACGCATTA 60.270 47.619 0.00 0.00 0.00 1.90
2863 4158 0.531753 GCCCACCAAAACAACGCATT 60.532 50.000 0.00 0.00 0.00 3.56
2864 4159 1.068921 GCCCACCAAAACAACGCAT 59.931 52.632 0.00 0.00 0.00 4.73
2868 4163 1.208293 TGAAAGGCCCACCAAAACAAC 59.792 47.619 0.00 0.00 39.06 3.32
2869 4164 1.208293 GTGAAAGGCCCACCAAAACAA 59.792 47.619 0.00 0.00 39.06 2.83
2881 4176 2.359975 CCCCACTCCGTGAAAGGC 60.360 66.667 0.00 0.00 35.23 4.35
2882 4177 0.328258 ATTCCCCACTCCGTGAAAGG 59.672 55.000 0.00 0.00 35.23 3.11
2884 4179 2.668144 AAATTCCCCACTCCGTGAAA 57.332 45.000 0.00 0.00 35.23 2.69
2934 4229 6.625362 CGACAACATATGATCCTATAGCACT 58.375 40.000 10.38 0.00 0.00 4.40
2943 4238 5.741388 AAAGAAGCGACAACATATGATCC 57.259 39.130 10.38 0.00 0.00 3.36
2944 4239 7.910304 AGTAAAAGAAGCGACAACATATGATC 58.090 34.615 10.38 3.20 0.00 2.92
2946 4241 7.491372 CCTAGTAAAAGAAGCGACAACATATGA 59.509 37.037 10.38 0.00 0.00 2.15
2952 4247 4.151867 CCACCTAGTAAAAGAAGCGACAAC 59.848 45.833 0.00 0.00 0.00 3.32
2954 4249 3.322828 ACCACCTAGTAAAAGAAGCGACA 59.677 43.478 0.00 0.00 0.00 4.35
2955 4250 3.678548 CACCACCTAGTAAAAGAAGCGAC 59.321 47.826 0.00 0.00 0.00 5.19
2956 4251 3.575256 TCACCACCTAGTAAAAGAAGCGA 59.425 43.478 0.00 0.00 0.00 4.93
2957 4252 3.921677 TCACCACCTAGTAAAAGAAGCG 58.078 45.455 0.00 0.00 0.00 4.68
2958 4253 5.148651 TCTCACCACCTAGTAAAAGAAGC 57.851 43.478 0.00 0.00 0.00 3.86
2959 4254 5.337652 CCCTCTCACCACCTAGTAAAAGAAG 60.338 48.000 0.00 0.00 0.00 2.85
2960 4255 4.530946 CCCTCTCACCACCTAGTAAAAGAA 59.469 45.833 0.00 0.00 0.00 2.52
2961 4256 4.094476 CCCTCTCACCACCTAGTAAAAGA 58.906 47.826 0.00 0.00 0.00 2.52
2962 4257 3.369576 GCCCTCTCACCACCTAGTAAAAG 60.370 52.174 0.00 0.00 0.00 2.27
2966 4269 0.708209 TGCCCTCTCACCACCTAGTA 59.292 55.000 0.00 0.00 0.00 1.82
2967 4270 0.905337 GTGCCCTCTCACCACCTAGT 60.905 60.000 0.00 0.00 0.00 2.57
2975 4278 1.153349 GAATCCCGTGCCCTCTCAC 60.153 63.158 0.00 0.00 0.00 3.51
2984 4287 7.305474 GGCTATAAAAACATATGAATCCCGTG 58.695 38.462 10.38 0.00 0.00 4.94
2985 4288 6.433093 GGGCTATAAAAACATATGAATCCCGT 59.567 38.462 10.38 0.00 0.00 5.28
2987 4290 6.127730 CCGGGCTATAAAAACATATGAATCCC 60.128 42.308 10.38 5.57 0.00 3.85
2989 4292 7.448748 ACCGGGCTATAAAAACATATGAATC 57.551 36.000 10.38 0.00 0.00 2.52
2990 4293 7.657336 CAACCGGGCTATAAAAACATATGAAT 58.343 34.615 10.38 0.00 0.00 2.57
2993 4298 5.009610 AGCAACCGGGCTATAAAAACATATG 59.990 40.000 6.32 0.00 43.70 1.78
2996 4301 3.130340 CAGCAACCGGGCTATAAAAACAT 59.870 43.478 6.32 0.00 43.68 2.71
2998 4303 2.734175 GCAGCAACCGGGCTATAAAAAC 60.734 50.000 6.32 0.00 43.68 2.43
3030 4335 8.819974 GCATTTTAACTGGGTCAATGATTTATG 58.180 33.333 0.00 0.00 0.00 1.90
3032 4339 7.032580 CGCATTTTAACTGGGTCAATGATTTA 58.967 34.615 0.00 0.00 0.00 1.40
3036 4343 4.075682 TCGCATTTTAACTGGGTCAATGA 58.924 39.130 0.01 0.00 0.00 2.57
3037 4344 4.433186 TCGCATTTTAACTGGGTCAATG 57.567 40.909 0.01 0.00 0.00 2.82
3038 4345 4.279671 TGTTCGCATTTTAACTGGGTCAAT 59.720 37.500 0.01 0.00 0.00 2.57
3046 4353 9.651913 ATTTTGGATTATGTTCGCATTTTAACT 57.348 25.926 0.00 0.00 38.94 2.24
3049 4356 9.429359 ACAATTTTGGATTATGTTCGCATTTTA 57.571 25.926 0.00 0.00 38.94 1.52
3055 4362 8.349983 AGGTATACAATTTTGGATTATGTTCGC 58.650 33.333 5.01 0.00 32.88 4.70
3056 4363 9.878599 GAGGTATACAATTTTGGATTATGTTCG 57.121 33.333 5.01 0.00 32.88 3.95
3062 4369 9.839817 TCGATTGAGGTATACAATTTTGGATTA 57.160 29.630 5.01 0.00 37.96 1.75
3080 4387 2.033299 GGAGCTCTCTCACTCGATTGAG 59.967 54.545 22.96 22.96 43.93 3.02
3089 4396 3.006752 CCCTGATTATGGAGCTCTCTCAC 59.993 52.174 14.64 0.00 41.13 3.51
3103 4410 9.920946 ATTTTAATTCACTAAGCTCCCTGATTA 57.079 29.630 0.00 0.00 0.00 1.75
3153 4460 8.026607 TCCGATTTTAACTGGATCAACAATTTC 58.973 33.333 0.00 0.00 0.00 2.17
3164 4471 3.264706 TGGGTCATCCGATTTTAACTGGA 59.735 43.478 0.00 0.00 38.76 3.86
3179 4486 7.184862 AGGTCTTCAATCTAAAATTGGGTCAT 58.815 34.615 0.00 0.00 0.00 3.06
3189 4496 9.793259 ACAAACAATAGAGGTCTTCAATCTAAA 57.207 29.630 0.00 0.00 0.00 1.85
3190 4497 9.219603 CACAAACAATAGAGGTCTTCAATCTAA 57.780 33.333 0.00 0.00 0.00 2.10
3191 4498 8.593679 TCACAAACAATAGAGGTCTTCAATCTA 58.406 33.333 0.00 0.00 0.00 1.98
3192 4499 7.453393 TCACAAACAATAGAGGTCTTCAATCT 58.547 34.615 0.00 0.00 0.00 2.40
3193 4500 7.148340 CCTCACAAACAATAGAGGTCTTCAATC 60.148 40.741 0.00 0.00 42.10 2.67
3194 4501 6.656693 CCTCACAAACAATAGAGGTCTTCAAT 59.343 38.462 0.00 0.00 42.10 2.57
3195 4502 5.997746 CCTCACAAACAATAGAGGTCTTCAA 59.002 40.000 0.00 0.00 42.10 2.69
3196 4503 5.551233 CCTCACAAACAATAGAGGTCTTCA 58.449 41.667 0.00 0.00 42.10 3.02
3197 4504 6.599345 GGCCTCACAAACAATAGAGGTCTTC 61.599 48.000 8.89 0.00 46.65 2.87
3198 4505 4.807643 GGCCTCACAAACAATAGAGGTCTT 60.808 45.833 8.89 0.00 46.65 3.01
3199 4506 3.307762 GGCCTCACAAACAATAGAGGTCT 60.308 47.826 8.89 0.00 46.65 3.85
3203 4510 6.817765 TTTAAGGCCTCACAAACAATAGAG 57.182 37.500 5.23 0.00 0.00 2.43
3206 4513 9.921637 CTAATTTTTAAGGCCTCACAAACAATA 57.078 29.630 5.23 0.00 0.00 1.90
3214 4521 4.098044 GCTCCCTAATTTTTAAGGCCTCAC 59.902 45.833 5.23 0.00 0.00 3.51
3215 4522 4.264172 TGCTCCCTAATTTTTAAGGCCTCA 60.264 41.667 5.23 0.00 0.00 3.86
3236 4543 4.383052 CGTGCACTAGTTACTATGCTATGC 59.617 45.833 16.19 13.09 38.90 3.14
3242 4549 5.131168 CAAAGCGTGCACTAGTTACTATG 57.869 43.478 16.19 0.00 0.00 2.23
3272 4579 5.941555 TTAAGAAACCCAACAACACCAAT 57.058 34.783 0.00 0.00 0.00 3.16
3461 5169 7.651808 ACCAAATTCATAGCAGAAAATATCGG 58.348 34.615 0.00 0.00 0.00 4.18
3471 5179 9.941664 CTATAACTTTGACCAAATTCATAGCAG 57.058 33.333 0.00 0.00 30.11 4.24
3567 5854 1.274069 ACACACTCCATCATCTCCCCT 60.274 52.381 0.00 0.00 0.00 4.79
3649 5955 7.307989 GCACCAATATAGTATAGGTTGCTTGTG 60.308 40.741 6.80 6.82 0.00 3.33
3654 5960 7.383687 TGTAGCACCAATATAGTATAGGTTGC 58.616 38.462 6.21 6.21 0.00 4.17
3751 6708 2.772568 TCAATCAACAACAACTGGCG 57.227 45.000 0.00 0.00 0.00 5.69
3819 6777 6.601332 TCCTTTTCACTCAACTGAGGTATTT 58.399 36.000 11.31 0.00 46.13 1.40
3841 6800 9.944376 TGACTATATTCCATAATTTGTAGCTCC 57.056 33.333 0.00 0.00 0.00 4.70
3866 6827 8.867112 AGCACTGCATTCAATTATTCTAATTG 57.133 30.769 11.60 11.60 38.60 2.32
3872 6833 5.511234 AGGAGCACTGCATTCAATTATTC 57.489 39.130 3.30 0.00 0.00 1.75
3885 6847 4.276678 TCAACAATTTCTCAAGGAGCACTG 59.723 41.667 0.00 0.00 0.00 3.66
3888 6850 3.569701 GGTCAACAATTTCTCAAGGAGCA 59.430 43.478 0.00 0.00 0.00 4.26
3968 6930 9.765795 ACTATACACTATGCTTCCTAATTGTTC 57.234 33.333 0.00 0.00 0.00 3.18
4065 7032 3.196685 GCCTACATTCAGTTGAGGTCTCT 59.803 47.826 0.00 0.00 0.00 3.10
4119 7098 6.190346 ACTGTACTGCCTAGCTACTACTAT 57.810 41.667 0.00 0.00 0.00 2.12
4136 7115 5.004440 CACGCATGTGTAATGAGTACTGTAC 59.996 44.000 12.39 9.93 41.34 2.90
4202 7191 9.900264 CTGCAAAAGTGTTATTTAGTTTTCAAC 57.100 29.630 0.00 0.00 30.47 3.18
4206 7195 9.083080 GTGACTGCAAAAGTGTTATTTAGTTTT 57.917 29.630 0.00 0.00 40.07 2.43
4209 7198 7.148154 TGTGTGACTGCAAAAGTGTTATTTAGT 60.148 33.333 0.00 0.00 40.07 2.24
4216 7205 3.487376 CGATGTGTGACTGCAAAAGTGTT 60.487 43.478 0.00 0.00 40.07 3.32
4220 7209 1.664016 GCCGATGTGTGACTGCAAAAG 60.664 52.381 0.00 0.00 0.00 2.27
4224 7213 1.227793 TTGCCGATGTGTGACTGCA 60.228 52.632 0.00 0.00 0.00 4.41
4226 7215 0.884259 TGGTTGCCGATGTGTGACTG 60.884 55.000 0.00 0.00 0.00 3.51
4227 7216 0.884704 GTGGTTGCCGATGTGTGACT 60.885 55.000 0.00 0.00 0.00 3.41
4228 7217 0.884704 AGTGGTTGCCGATGTGTGAC 60.885 55.000 0.00 0.00 0.00 3.67
4229 7218 0.602638 GAGTGGTTGCCGATGTGTGA 60.603 55.000 0.00 0.00 0.00 3.58
4243 7232 4.454504 ACAATTAAGTAGCAAACCGAGTGG 59.545 41.667 0.00 0.00 42.84 4.00
4276 7265 6.867662 ATCGGCTCCAAGTAATCAAATAAG 57.132 37.500 0.00 0.00 0.00 1.73
4279 7268 6.998074 TCAATATCGGCTCCAAGTAATCAAAT 59.002 34.615 0.00 0.00 0.00 2.32
4288 7277 4.092529 CGATCATTCAATATCGGCTCCAAG 59.907 45.833 0.00 0.00 40.93 3.61
4488 7483 2.022195 CTCCATGCCCTCAATGTCTTG 58.978 52.381 0.00 0.00 0.00 3.02
4496 7491 0.614697 TCTCGAACTCCATGCCCTCA 60.615 55.000 0.00 0.00 0.00 3.86
4509 7504 1.226688 CGCTGCGGATTCTCTCGAA 60.227 57.895 15.40 0.00 0.00 3.71
4586 7584 0.034960 TCAGTAGGCTGCTCTCGACT 60.035 55.000 0.71 0.00 42.29 4.18
4634 7632 0.393808 AGTTTGGCCGTTGTGTGTCT 60.394 50.000 0.00 0.00 0.00 3.41
4698 7696 2.039084 AGGCAATCTCCAAGAACTCGTT 59.961 45.455 0.00 0.00 0.00 3.85
4919 7917 3.443099 TCCGATATGCTCTCTGTTGTG 57.557 47.619 0.00 0.00 0.00 3.33
5040 8038 3.576550 ACTTCCTCTCTCTTCAACTGGTC 59.423 47.826 0.00 0.00 0.00 4.02
5099 8097 7.230747 TCATTCTTTCTCTTACCATTTCACCA 58.769 34.615 0.00 0.00 0.00 4.17
5111 8109 6.598850 GCCTCAGATTTCTCATTCTTTCTCTT 59.401 38.462 0.00 0.00 0.00 2.85
5127 8125 0.330604 ACCACTGCATGCCTCAGATT 59.669 50.000 16.68 0.00 35.61 2.40
5141 8139 0.319900 CGCTAGTGCACTTCACCACT 60.320 55.000 27.06 0.00 46.81 4.00
5373 8372 3.611530 GCACAAGGCTTTCGCATTTTCTA 60.612 43.478 11.71 0.00 38.21 2.10
5510 8509 2.165641 TGCGTATTTCGTCCACTGATCT 59.834 45.455 0.00 0.00 42.13 2.75
5529 8528 5.302823 GCCCCATAATCCCATTAATCTATGC 59.697 44.000 0.00 0.00 0.00 3.14
5901 10332 5.749596 TTTATCAAATCATTCCGCGATGT 57.250 34.783 8.23 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.