Multiple sequence alignment - TraesCS7D01G479800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G479800 chr7D 100.000 4854 0 0 1 4854 590820955 590816102 0.000000e+00 8964.0
1 TraesCS7D01G479800 chr7D 83.406 1374 211 15 2536 3897 590855007 590856375 0.000000e+00 1258.0
2 TraesCS7D01G479800 chr7D 86.265 415 51 4 4 417 559269206 559268797 3.450000e-121 446.0
3 TraesCS7D01G479800 chr7D 84.434 424 63 2 6 428 515397028 515397449 9.720000e-112 414.0
4 TraesCS7D01G479800 chr7B 92.487 1970 129 11 2136 4090 666324048 666326013 0.000000e+00 2800.0
5 TraesCS7D01G479800 chr7B 92.083 1781 119 5 2135 3899 665677885 665679659 0.000000e+00 2488.0
6 TraesCS7D01G479800 chr7B 81.698 1743 286 22 2174 3898 666411042 666412769 0.000000e+00 1421.0
7 TraesCS7D01G479800 chr7B 93.520 895 50 4 914 1804 666323004 666323894 0.000000e+00 1325.0
8 TraesCS7D01G479800 chr7B 92.478 904 51 8 914 1804 665676856 665677755 0.000000e+00 1277.0
9 TraesCS7D01G479800 chr7B 93.351 767 40 5 1048 1804 665558697 665557932 0.000000e+00 1123.0
10 TraesCS7D01G479800 chr7B 88.631 862 82 5 2905 3764 460280146 460279299 0.000000e+00 1035.0
11 TraesCS7D01G479800 chr7B 91.930 632 47 3 1 630 665571176 665570547 0.000000e+00 881.0
12 TraesCS7D01G479800 chr7B 90.709 635 48 6 937 1562 460281457 460280825 0.000000e+00 835.0
13 TraesCS7D01G479800 chr7B 91.489 423 21 8 642 1052 665570472 665570053 7.050000e-158 568.0
14 TraesCS7D01G479800 chr7B 87.662 308 27 6 1507 1804 460280832 460280526 1.000000e-91 348.0
15 TraesCS7D01G479800 chr7B 96.985 199 5 1 4634 4832 665546659 665546462 2.800000e-87 333.0
16 TraesCS7D01G479800 chr7B 73.333 345 63 24 4200 4535 615676591 615676267 3.090000e-17 100.0
17 TraesCS7D01G479800 chr7B 84.416 77 6 2 1948 2018 460280512 460280436 2.420000e-08 71.3
18 TraesCS7D01G479800 chr5B 92.121 1650 129 1 2231 3879 93447472 93449121 0.000000e+00 2326.0
19 TraesCS7D01G479800 chr3B 90.012 1682 149 7 2092 3764 593545216 593546887 0.000000e+00 2158.0
20 TraesCS7D01G479800 chr3B 87.994 658 47 8 935 1562 593544068 593544723 0.000000e+00 749.0
21 TraesCS7D01G479800 chr3B 85.761 309 37 6 1501 1804 593544709 593545015 2.180000e-83 320.0
22 TraesCS7D01G479800 chr3B 85.135 74 5 2 1948 2015 593545029 593545102 2.420000e-08 71.3
23 TraesCS7D01G479800 chr3A 88.979 862 79 5 2905 3764 459077560 459076713 0.000000e+00 1051.0
24 TraesCS7D01G479800 chr3A 91.366 637 44 6 935 1562 459078873 459078239 0.000000e+00 861.0
25 TraesCS7D01G479800 chr3A 87.662 308 27 5 1507 1804 459078246 459077940 1.000000e-91 348.0
26 TraesCS7D01G479800 chr3A 84.416 77 6 2 1948 2018 459077926 459077850 2.420000e-08 71.3
27 TraesCS7D01G479800 chr7A 84.778 427 63 2 4 428 644029849 644029423 1.250000e-115 427.0
28 TraesCS7D01G479800 chr7A 79.927 548 73 28 4199 4737 708777003 708776484 7.680000e-98 368.0
29 TraesCS7D01G479800 chr7A 100.000 28 0 0 471 498 42691561 42691534 9.000000e-03 52.8
30 TraesCS7D01G479800 chr1A 84.778 427 60 5 4 428 484294622 484294199 1.620000e-114 424.0
31 TraesCS7D01G479800 chr1A 78.481 553 82 18 4319 4851 46254637 46255172 1.300000e-85 327.0
32 TraesCS7D01G479800 chr1A 82.253 293 44 8 4492 4778 521228535 521228825 3.750000e-61 246.0
33 TraesCS7D01G479800 chr1B 83.298 467 66 10 7 470 465268831 465269288 2.090000e-113 420.0
34 TraesCS7D01G479800 chr1B 100.000 28 0 0 471 498 17765398 17765371 9.000000e-03 52.8
35 TraesCS7D01G479800 chr2A 83.991 431 61 8 1 428 605249317 605249742 1.630000e-109 407.0
36 TraesCS7D01G479800 chr2A 75.141 531 98 25 4300 4816 527619380 527619890 8.180000e-53 219.0
37 TraesCS7D01G479800 chr2A 75.615 488 84 21 4194 4666 55962024 55962491 4.920000e-50 209.0
38 TraesCS7D01G479800 chr2A 78.710 155 20 11 4295 4444 572746069 572746215 1.860000e-14 91.6
39 TraesCS7D01G479800 chr5D 83.568 426 68 2 4 428 529762842 529763266 9.790000e-107 398.0
40 TraesCS7D01G479800 chr5D 77.407 509 81 24 4199 4698 565739357 565738874 6.190000e-69 272.0
41 TraesCS7D01G479800 chr5D 75.000 420 79 21 4310 4711 539863445 539863856 2.320000e-38 171.0
42 TraesCS7D01G479800 chr3D 83.607 427 67 3 4 428 302225555 302225130 9.790000e-107 398.0
43 TraesCS7D01G479800 chr3D 80.410 536 70 22 4282 4811 547617867 547617361 4.590000e-100 375.0
44 TraesCS7D01G479800 chr3D 74.549 499 97 15 4203 4694 97154189 97154664 1.780000e-44 191.0
45 TraesCS7D01G479800 chr3D 94.737 38 1 1 469 505 9759854 9759817 1.890000e-04 58.4
46 TraesCS7D01G479800 chr3D 100.000 30 0 0 469 498 338496777 338496806 6.790000e-04 56.5
47 TraesCS7D01G479800 chrUn 91.367 278 19 3 917 1193 478744125 478743852 4.590000e-100 375.0
48 TraesCS7D01G479800 chr1D 76.842 665 105 26 4199 4839 46459836 46460475 3.620000e-86 329.0
49 TraesCS7D01G479800 chr5A 83.562 146 18 4 2135 2274 591607550 591607695 1.100000e-26 132.0
50 TraesCS7D01G479800 chr5A 74.860 179 39 5 4675 4849 290111555 290111379 5.210000e-10 76.8
51 TraesCS7D01G479800 chr5A 95.122 41 1 1 2106 2146 591607510 591607549 4.060000e-06 63.9
52 TraesCS7D01G479800 chr2B 91.837 49 4 0 418 466 582648983 582648935 8.720000e-08 69.4
53 TraesCS7D01G479800 chr6A 94.737 38 1 1 469 505 176348175 176348212 1.890000e-04 58.4
54 TraesCS7D01G479800 chr2D 100.000 30 0 0 469 498 621581764 621581793 6.790000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G479800 chr7D 590816102 590820955 4853 True 8964.000 8964 100.00000 1 4854 1 chr7D.!!$R2 4853
1 TraesCS7D01G479800 chr7D 590855007 590856375 1368 False 1258.000 1258 83.40600 2536 3897 1 chr7D.!!$F2 1361
2 TraesCS7D01G479800 chr7B 666323004 666326013 3009 False 2062.500 2800 93.00350 914 4090 2 chr7B.!!$F3 3176
3 TraesCS7D01G479800 chr7B 665676856 665679659 2803 False 1882.500 2488 92.28050 914 3899 2 chr7B.!!$F2 2985
4 TraesCS7D01G479800 chr7B 666411042 666412769 1727 False 1421.000 1421 81.69800 2174 3898 1 chr7B.!!$F1 1724
5 TraesCS7D01G479800 chr7B 665557932 665558697 765 True 1123.000 1123 93.35100 1048 1804 1 chr7B.!!$R3 756
6 TraesCS7D01G479800 chr7B 665570053 665571176 1123 True 724.500 881 91.70950 1 1052 2 chr7B.!!$R5 1051
7 TraesCS7D01G479800 chr7B 460279299 460281457 2158 True 572.325 1035 87.85450 937 3764 4 chr7B.!!$R4 2827
8 TraesCS7D01G479800 chr5B 93447472 93449121 1649 False 2326.000 2326 92.12100 2231 3879 1 chr5B.!!$F1 1648
9 TraesCS7D01G479800 chr3B 593544068 593546887 2819 False 824.575 2158 87.22550 935 3764 4 chr3B.!!$F1 2829
10 TraesCS7D01G479800 chr3A 459076713 459078873 2160 True 582.825 1051 88.10575 935 3764 4 chr3A.!!$R1 2829
11 TraesCS7D01G479800 chr7A 708776484 708777003 519 True 368.000 368 79.92700 4199 4737 1 chr7A.!!$R3 538
12 TraesCS7D01G479800 chr1A 46254637 46255172 535 False 327.000 327 78.48100 4319 4851 1 chr1A.!!$F1 532
13 TraesCS7D01G479800 chr2A 527619380 527619890 510 False 219.000 219 75.14100 4300 4816 1 chr2A.!!$F2 516
14 TraesCS7D01G479800 chr3D 547617361 547617867 506 True 375.000 375 80.41000 4282 4811 1 chr3D.!!$R3 529
15 TraesCS7D01G479800 chr1D 46459836 46460475 639 False 329.000 329 76.84200 4199 4839 1 chr1D.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.248907 CGCTTCACGGGTCATATCGT 60.249 55.0 0.0 0.0 40.49 3.73 F
403 406 0.320683 CGGCTATGATTGGATGGCGA 60.321 55.0 0.0 0.0 46.95 5.54 F
1124 1201 0.034896 GACGTTGCCTTCTTCCAGGA 59.965 55.0 0.0 0.0 35.71 3.86 F
1780 1998 0.554792 ATTGATTGGGAGGCTGAGGG 59.445 55.0 0.0 0.0 0.00 4.30 F
2461 2815 0.184933 CTTTTGGGAGTGTGGGTGGA 59.815 55.0 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1124 1201 0.247736 GTTCATGGTCCTCAGCTCGT 59.752 55.0 0.00 0.0 0.00 4.18 R
1629 1838 0.250814 TAAACCCCGCGTTGACCAAT 60.251 50.0 4.92 0.0 33.93 3.16 R
2432 2785 0.036875 CTCCCAAAAGCTCTTCGGGT 59.963 55.0 13.59 0.0 36.85 5.28 R
2974 3336 0.327924 CAGTGCCATTACCAGGTGGA 59.672 55.0 0.76 0.0 37.72 4.02 R
3917 4294 0.036010 AATGCCCTTGACTGTCTCCG 60.036 55.0 9.51 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.913126 GTGGACCTCACGATCACC 57.087 61.111 0.00 0.00 36.56 4.02
66 67 0.324368 ACGAGGATGAGTAGGCCACA 60.324 55.000 5.01 0.00 0.00 4.17
118 119 1.109920 CGATCCATCTCCCGTGGTCT 61.110 60.000 0.00 0.00 37.96 3.85
143 144 4.436998 CTCGCCGGAGACCACACC 62.437 72.222 5.05 0.00 43.27 4.16
146 147 2.047179 GCCGGAGACCACACCTTC 60.047 66.667 5.05 0.00 0.00 3.46
154 155 1.557443 GACCACACCTTCGCTTCACG 61.557 60.000 0.00 0.00 45.62 4.35
159 160 2.342279 CCTTCGCTTCACGGGTCA 59.658 61.111 0.00 0.00 43.89 4.02
162 163 1.202533 CCTTCGCTTCACGGGTCATAT 60.203 52.381 0.00 0.00 43.89 1.78
165 166 0.248907 CGCTTCACGGGTCATATCGT 60.249 55.000 0.00 0.00 40.49 3.73
181 182 0.738975 TCGTCGGTGATCATGGAGAC 59.261 55.000 0.00 5.79 0.00 3.36
199 200 3.458163 GGCGGATGGAGGACGACA 61.458 66.667 0.00 0.00 35.30 4.35
239 242 1.153229 GCCGCCCTAGGTAGGTTTG 60.153 63.158 17.87 0.00 42.03 2.93
246 249 0.546598 CTAGGTAGGTTTGGGGGCAG 59.453 60.000 0.00 0.00 0.00 4.85
289 292 9.829507 AAATGTTCAAAGTGTAATGAAAATCCA 57.170 25.926 0.00 0.00 37.31 3.41
294 297 8.554835 TCAAAGTGTAATGAAAATCCATCGTA 57.445 30.769 0.00 0.00 0.00 3.43
314 317 7.172654 TCGTATTTGTATGAAATCCGTCATG 57.827 36.000 0.00 0.00 38.69 3.07
334 337 4.281525 TGTTTATAAGAAATTCGGCCGC 57.718 40.909 23.51 5.81 0.00 6.53
339 342 0.386731 AAGAAATTCGGCCGCGTTTG 60.387 50.000 25.44 0.00 0.00 2.93
354 357 3.252400 GCGTTTGCATGAATTTCATCCA 58.748 40.909 8.95 3.85 42.15 3.41
390 393 5.126067 AGAGTTTGAAATGTATGCGGCTAT 58.874 37.500 0.00 0.00 0.00 2.97
403 406 0.320683 CGGCTATGATTGGATGGCGA 60.321 55.000 0.00 0.00 46.95 5.54
419 422 3.771160 GACCTCCCGCATCCGTGT 61.771 66.667 0.00 0.00 0.00 4.49
445 448 1.743394 GACGGATGCGGGAGAAATTTT 59.257 47.619 12.44 0.00 0.00 1.82
446 449 1.472480 ACGGATGCGGGAGAAATTTTG 59.528 47.619 12.44 0.00 0.00 2.44
447 450 1.798813 CGGATGCGGGAGAAATTTTGC 60.799 52.381 0.00 0.00 0.00 3.68
455 458 2.823747 GGGAGAAATTTTGCGGGTTACT 59.176 45.455 0.00 0.00 0.00 2.24
493 496 9.003658 CCTTAGGCATAACTTTGGTCTTATATG 57.996 37.037 0.00 0.00 0.00 1.78
495 498 9.555727 TTAGGCATAACTTTGGTCTTATATGAC 57.444 33.333 9.70 9.70 36.31 3.06
496 499 7.806180 AGGCATAACTTTGGTCTTATATGACT 58.194 34.615 15.98 0.00 34.97 3.41
547 550 5.894298 TCCTACATATGCAAAGACCAGAT 57.106 39.130 1.58 0.00 0.00 2.90
553 556 2.346766 TGCAAAGACCAGATGTGTGT 57.653 45.000 0.00 0.00 0.00 3.72
566 569 6.127479 ACCAGATGTGTGTTTATTGTGTTTGT 60.127 34.615 0.00 0.00 0.00 2.83
577 580 9.522804 TGTTTATTGTGTTTGTACCTTTTGATC 57.477 29.630 0.00 0.00 0.00 2.92
630 633 3.062909 TGTCGGAAAAGAGACGTTGTTTG 59.937 43.478 0.00 0.00 40.05 2.93
631 634 3.307782 GTCGGAAAAGAGACGTTGTTTGA 59.692 43.478 0.00 0.00 0.00 2.69
633 636 4.033587 TCGGAAAAGAGACGTTGTTTGAAG 59.966 41.667 0.00 0.00 0.00 3.02
635 638 3.319238 AAAGAGACGTTGTTTGAAGCG 57.681 42.857 0.00 0.00 0.00 4.68
637 640 2.755650 AGAGACGTTGTTTGAAGCGAT 58.244 42.857 0.00 0.00 0.00 4.58
638 641 2.476619 AGAGACGTTGTTTGAAGCGATG 59.523 45.455 0.00 0.00 0.00 3.84
640 643 2.476619 AGACGTTGTTTGAAGCGATGAG 59.523 45.455 0.00 0.00 0.00 2.90
653 719 1.131126 GCGATGAGTGGACCATGTTTG 59.869 52.381 0.00 0.00 0.00 2.93
656 722 4.000325 CGATGAGTGGACCATGTTTGTAA 59.000 43.478 0.00 0.00 0.00 2.41
681 747 8.791327 AGAAAAACAGTTTTTGATTTGGACAT 57.209 26.923 25.49 0.22 42.51 3.06
689 755 8.492748 CAGTTTTTGATTTGGACATGATTCTTG 58.507 33.333 0.00 0.00 0.00 3.02
695 761 8.578448 TGATTTGGACATGATTCTTGTGATTA 57.422 30.769 9.69 0.00 0.00 1.75
778 844 4.766404 ACCAAATGCGGTCTTTTTCTAG 57.234 40.909 0.00 0.00 32.11 2.43
820 886 6.006275 TCTAGGGAGATTTTTCATTCTGGG 57.994 41.667 0.00 0.00 0.00 4.45
849 915 3.306088 GCTGTGAAGTGTGAAGTAGCCTA 60.306 47.826 0.00 0.00 0.00 3.93
852 918 4.238514 GTGAAGTGTGAAGTAGCCTACAG 58.761 47.826 4.41 0.00 0.00 2.74
855 921 5.069914 TGAAGTGTGAAGTAGCCTACAGAAA 59.930 40.000 4.41 0.00 0.00 2.52
886 953 1.564622 CACCACGAAGACAACAGCG 59.435 57.895 0.00 0.00 0.00 5.18
1124 1201 0.034896 GACGTTGCCTTCTTCCAGGA 59.965 55.000 0.00 0.00 35.71 3.86
1134 1211 0.967887 TCTTCCAGGACGAGCTGAGG 60.968 60.000 0.00 0.00 0.00 3.86
1193 1270 4.436998 GCCCGACGTCCAGACCAG 62.437 72.222 10.58 0.00 0.00 4.00
1626 1833 1.377333 GCTTGCCAGGGAGGTGTAC 60.377 63.158 0.00 0.00 40.61 2.90
1627 1834 1.299976 CTTGCCAGGGAGGTGTACC 59.700 63.158 0.00 0.00 40.61 3.34
1629 1838 2.682494 GCCAGGGAGGTGTACCGA 60.682 66.667 0.00 0.00 42.08 4.69
1647 1856 1.520600 GATTGGTCAACGCGGGGTTT 61.521 55.000 12.47 0.00 36.49 3.27
1649 1858 1.165284 TTGGTCAACGCGGGGTTTAC 61.165 55.000 12.47 10.38 36.49 2.01
1731 1949 3.160585 TCCCAAGTGGACAGCAGG 58.839 61.111 0.00 0.00 38.61 4.85
1780 1998 0.554792 ATTGATTGGGAGGCTGAGGG 59.445 55.000 0.00 0.00 0.00 4.30
1807 2025 5.086104 TCTGCAAGATAAGAGGTACAACC 57.914 43.478 0.00 0.00 38.67 3.77
1808 2026 4.530553 TCTGCAAGATAAGAGGTACAACCA 59.469 41.667 0.00 0.00 38.52 3.67
1809 2027 5.189736 TCTGCAAGATAAGAGGTACAACCAT 59.810 40.000 0.00 0.00 38.52 3.55
1810 2028 5.815581 TGCAAGATAAGAGGTACAACCATT 58.184 37.500 0.00 0.00 41.95 3.16
1811 2029 6.245408 TGCAAGATAAGAGGTACAACCATTT 58.755 36.000 0.00 0.00 41.95 2.32
1812 2030 7.398829 TGCAAGATAAGAGGTACAACCATTTA 58.601 34.615 0.00 0.00 41.95 1.40
1813 2031 8.052748 TGCAAGATAAGAGGTACAACCATTTAT 58.947 33.333 0.00 2.52 41.95 1.40
1814 2032 9.555727 GCAAGATAAGAGGTACAACCATTTATA 57.444 33.333 0.00 0.00 41.95 0.98
1821 2039 9.747898 AAGAGGTACAACCATTTATATTGACAA 57.252 29.630 0.00 0.00 41.95 3.18
1822 2040 9.920946 AGAGGTACAACCATTTATATTGACAAT 57.079 29.630 5.87 5.87 41.95 2.71
1824 2042 9.693739 AGGTACAACCATTTATATTGACAATCA 57.306 29.630 3.36 0.00 41.95 2.57
1828 2046 9.119418 ACAACCATTTATATTGACAATCATCGA 57.881 29.630 3.36 0.00 0.00 3.59
1829 2047 9.385902 CAACCATTTATATTGACAATCATCGAC 57.614 33.333 3.36 0.00 0.00 4.20
1830 2048 8.099364 ACCATTTATATTGACAATCATCGACC 57.901 34.615 3.36 0.00 0.00 4.79
1831 2049 7.719193 ACCATTTATATTGACAATCATCGACCA 59.281 33.333 3.36 0.00 0.00 4.02
1832 2050 8.017373 CCATTTATATTGACAATCATCGACCAC 58.983 37.037 3.36 0.00 0.00 4.16
1833 2051 7.490962 TTTATATTGACAATCATCGACCACC 57.509 36.000 3.36 0.00 0.00 4.61
1834 2052 2.849294 TTGACAATCATCGACCACCA 57.151 45.000 0.00 0.00 0.00 4.17
1835 2053 3.348647 TTGACAATCATCGACCACCAT 57.651 42.857 0.00 0.00 0.00 3.55
1836 2054 3.348647 TGACAATCATCGACCACCATT 57.651 42.857 0.00 0.00 0.00 3.16
1837 2055 3.684908 TGACAATCATCGACCACCATTT 58.315 40.909 0.00 0.00 0.00 2.32
1838 2056 4.837972 TGACAATCATCGACCACCATTTA 58.162 39.130 0.00 0.00 0.00 1.40
1839 2057 5.436175 TGACAATCATCGACCACCATTTAT 58.564 37.500 0.00 0.00 0.00 1.40
1840 2058 5.296531 TGACAATCATCGACCACCATTTATG 59.703 40.000 0.00 0.00 0.00 1.90
1841 2059 4.036734 ACAATCATCGACCACCATTTATGC 59.963 41.667 0.00 0.00 0.00 3.14
1842 2060 3.558931 TCATCGACCACCATTTATGCT 57.441 42.857 0.00 0.00 0.00 3.79
1843 2061 3.205338 TCATCGACCACCATTTATGCTG 58.795 45.455 0.00 0.00 0.00 4.41
1844 2062 3.118445 TCATCGACCACCATTTATGCTGA 60.118 43.478 0.00 0.00 0.00 4.26
1845 2063 3.342377 TCGACCACCATTTATGCTGAA 57.658 42.857 0.00 0.00 0.00 3.02
1846 2064 3.680490 TCGACCACCATTTATGCTGAAA 58.320 40.909 0.00 0.00 0.00 2.69
1847 2065 4.075682 TCGACCACCATTTATGCTGAAAA 58.924 39.130 0.00 0.00 0.00 2.29
1848 2066 4.704540 TCGACCACCATTTATGCTGAAAAT 59.295 37.500 0.00 0.00 0.00 1.82
1849 2067 5.184864 TCGACCACCATTTATGCTGAAAATT 59.815 36.000 0.00 0.00 0.00 1.82
1850 2068 5.868801 CGACCACCATTTATGCTGAAAATTT 59.131 36.000 0.00 0.00 0.00 1.82
1851 2069 6.368516 CGACCACCATTTATGCTGAAAATTTT 59.631 34.615 2.28 2.28 0.00 1.82
1852 2070 7.437793 ACCACCATTTATGCTGAAAATTTTG 57.562 32.000 8.47 0.00 0.00 2.44
1853 2071 6.072563 ACCACCATTTATGCTGAAAATTTTGC 60.073 34.615 8.47 7.21 0.00 3.68
1854 2072 6.149807 CCACCATTTATGCTGAAAATTTTGCT 59.850 34.615 8.47 0.31 0.00 3.91
1855 2073 7.238571 CACCATTTATGCTGAAAATTTTGCTC 58.761 34.615 8.47 0.00 0.00 4.26
1856 2074 6.372381 ACCATTTATGCTGAAAATTTTGCTCC 59.628 34.615 8.47 0.00 0.00 4.70
1857 2075 6.372103 CCATTTATGCTGAAAATTTTGCTCCA 59.628 34.615 8.47 0.00 0.00 3.86
1858 2076 7.413657 CCATTTATGCTGAAAATTTTGCTCCAG 60.414 37.037 8.47 10.18 0.00 3.86
1859 2077 4.612264 ATGCTGAAAATTTTGCTCCAGT 57.388 36.364 8.47 0.00 0.00 4.00
1860 2078 5.726980 ATGCTGAAAATTTTGCTCCAGTA 57.273 34.783 8.47 9.09 0.00 2.74
1861 2079 4.870363 TGCTGAAAATTTTGCTCCAGTAC 58.130 39.130 8.47 0.00 0.00 2.73
1862 2080 4.584325 TGCTGAAAATTTTGCTCCAGTACT 59.416 37.500 8.47 0.00 0.00 2.73
1863 2081 4.919754 GCTGAAAATTTTGCTCCAGTACTG 59.080 41.667 16.34 16.34 0.00 2.74
1864 2082 5.278463 GCTGAAAATTTTGCTCCAGTACTGA 60.278 40.000 24.68 9.38 0.00 3.41
1865 2083 6.707440 TGAAAATTTTGCTCCAGTACTGAA 57.293 33.333 24.68 9.55 0.00 3.02
1866 2084 6.738114 TGAAAATTTTGCTCCAGTACTGAAG 58.262 36.000 24.68 15.24 0.00 3.02
1867 2085 6.545666 TGAAAATTTTGCTCCAGTACTGAAGA 59.454 34.615 24.68 12.56 0.00 2.87
1868 2086 6.959639 AAATTTTGCTCCAGTACTGAAGAA 57.040 33.333 24.68 4.72 0.00 2.52
1869 2087 6.959639 AATTTTGCTCCAGTACTGAAGAAA 57.040 33.333 24.68 11.92 0.00 2.52
1870 2088 7.530426 AATTTTGCTCCAGTACTGAAGAAAT 57.470 32.000 24.68 12.87 0.00 2.17
1871 2089 5.947228 TTTGCTCCAGTACTGAAGAAATG 57.053 39.130 24.68 5.59 0.00 2.32
1872 2090 4.623932 TGCTCCAGTACTGAAGAAATGT 57.376 40.909 24.68 0.00 0.00 2.71
1873 2091 4.569943 TGCTCCAGTACTGAAGAAATGTC 58.430 43.478 24.68 0.00 0.00 3.06
1874 2092 4.284490 TGCTCCAGTACTGAAGAAATGTCT 59.716 41.667 24.68 0.00 34.72 3.41
1891 2109 9.646427 AGAAATGTCTTCAGTACACTCTTATTC 57.354 33.333 0.00 0.00 0.00 1.75
1892 2110 9.646427 GAAATGTCTTCAGTACACTCTTATTCT 57.354 33.333 0.00 0.00 0.00 2.40
1893 2111 8.994429 AATGTCTTCAGTACACTCTTATTCTG 57.006 34.615 0.00 0.00 0.00 3.02
1894 2112 7.526142 TGTCTTCAGTACACTCTTATTCTGT 57.474 36.000 0.00 0.00 0.00 3.41
1895 2113 7.371159 TGTCTTCAGTACACTCTTATTCTGTG 58.629 38.462 0.00 0.00 37.67 3.66
1896 2114 6.809196 GTCTTCAGTACACTCTTATTCTGTGG 59.191 42.308 0.00 0.00 36.16 4.17
1897 2115 5.073311 TCAGTACACTCTTATTCTGTGGC 57.927 43.478 0.00 0.00 36.16 5.01
1898 2116 4.526650 TCAGTACACTCTTATTCTGTGGCA 59.473 41.667 0.00 0.00 36.16 4.92
1899 2117 5.187772 TCAGTACACTCTTATTCTGTGGCAT 59.812 40.000 0.00 0.00 36.16 4.40
1900 2118 6.379988 TCAGTACACTCTTATTCTGTGGCATA 59.620 38.462 0.00 0.00 36.16 3.14
1901 2119 7.069950 TCAGTACACTCTTATTCTGTGGCATAT 59.930 37.037 0.00 0.00 36.16 1.78
1902 2120 7.712639 CAGTACACTCTTATTCTGTGGCATATT 59.287 37.037 0.00 0.00 36.16 1.28
1903 2121 8.924303 AGTACACTCTTATTCTGTGGCATATTA 58.076 33.333 0.00 0.00 36.16 0.98
1904 2122 8.979574 GTACACTCTTATTCTGTGGCATATTAC 58.020 37.037 0.00 0.00 36.16 1.89
1918 2136 9.573166 TGTGGCATATTACTCTATTTGCTAATT 57.427 29.630 0.00 0.00 34.29 1.40
1920 2138 8.935844 TGGCATATTACTCTATTTGCTAATTCG 58.064 33.333 0.00 0.00 34.29 3.34
1921 2139 9.151471 GGCATATTACTCTATTTGCTAATTCGA 57.849 33.333 0.00 0.00 34.29 3.71
1928 2146 8.316640 ACTCTATTTGCTAATTCGATCAATCC 57.683 34.615 0.00 0.00 0.00 3.01
1929 2147 7.933577 ACTCTATTTGCTAATTCGATCAATCCA 59.066 33.333 0.00 0.00 0.00 3.41
1930 2148 8.087982 TCTATTTGCTAATTCGATCAATCCAC 57.912 34.615 0.00 0.00 0.00 4.02
1931 2149 6.949352 ATTTGCTAATTCGATCAATCCACT 57.051 33.333 0.00 0.00 0.00 4.00
1932 2150 6.757897 TTTGCTAATTCGATCAATCCACTT 57.242 33.333 0.00 0.00 0.00 3.16
1933 2151 6.757897 TTGCTAATTCGATCAATCCACTTT 57.242 33.333 0.00 0.00 0.00 2.66
1934 2152 6.122850 TGCTAATTCGATCAATCCACTTTG 57.877 37.500 0.00 0.00 0.00 2.77
1935 2153 4.972440 GCTAATTCGATCAATCCACTTTGC 59.028 41.667 0.00 0.00 0.00 3.68
1936 2154 5.220931 GCTAATTCGATCAATCCACTTTGCT 60.221 40.000 0.00 0.00 0.00 3.91
1937 2155 6.017934 GCTAATTCGATCAATCCACTTTGCTA 60.018 38.462 0.00 0.00 0.00 3.49
1938 2156 6.949352 AATTCGATCAATCCACTTTGCTAT 57.051 33.333 0.00 0.00 0.00 2.97
1939 2157 6.949352 ATTCGATCAATCCACTTTGCTATT 57.051 33.333 0.00 0.00 0.00 1.73
1940 2158 8.450578 AATTCGATCAATCCACTTTGCTATTA 57.549 30.769 0.00 0.00 0.00 0.98
1941 2159 6.844696 TCGATCAATCCACTTTGCTATTAC 57.155 37.500 0.00 0.00 0.00 1.89
1942 2160 6.582636 TCGATCAATCCACTTTGCTATTACT 58.417 36.000 0.00 0.00 0.00 2.24
1943 2161 6.701841 TCGATCAATCCACTTTGCTATTACTC 59.298 38.462 0.00 0.00 0.00 2.59
1944 2162 6.703607 CGATCAATCCACTTTGCTATTACTCT 59.296 38.462 0.00 0.00 0.00 3.24
1945 2163 7.867909 CGATCAATCCACTTTGCTATTACTCTA 59.132 37.037 0.00 0.00 0.00 2.43
1946 2164 8.894768 ATCAATCCACTTTGCTATTACTCTAC 57.105 34.615 0.00 0.00 0.00 2.59
1990 2208 7.108841 TGTTACTGACAAGAGTTAGTTCAGT 57.891 36.000 7.62 7.62 41.29 3.41
1991 2209 7.553334 TGTTACTGACAAGAGTTAGTTCAGTT 58.447 34.615 7.78 0.00 41.29 3.16
1993 2211 9.182933 GTTACTGACAAGAGTTAGTTCAGTTAG 57.817 37.037 7.78 0.00 41.29 2.34
1994 2212 7.349412 ACTGACAAGAGTTAGTTCAGTTAGT 57.651 36.000 0.00 0.00 41.29 2.24
1995 2213 7.783042 ACTGACAAGAGTTAGTTCAGTTAGTT 58.217 34.615 0.00 0.00 41.29 2.24
1996 2214 7.921745 ACTGACAAGAGTTAGTTCAGTTAGTTC 59.078 37.037 0.00 0.00 41.29 3.01
1997 2215 7.208080 TGACAAGAGTTAGTTCAGTTAGTTCC 58.792 38.462 0.00 0.00 0.00 3.62
1999 2217 6.985059 ACAAGAGTTAGTTCAGTTAGTTCCAC 59.015 38.462 0.00 0.00 0.00 4.02
2000 2218 6.099159 AGAGTTAGTTCAGTTAGTTCCACC 57.901 41.667 0.00 0.00 0.00 4.61
2001 2219 5.601313 AGAGTTAGTTCAGTTAGTTCCACCA 59.399 40.000 0.00 0.00 0.00 4.17
2002 2220 6.270231 AGAGTTAGTTCAGTTAGTTCCACCAT 59.730 38.462 0.00 0.00 0.00 3.55
2003 2221 6.838382 AGTTAGTTCAGTTAGTTCCACCATT 58.162 36.000 0.00 0.00 0.00 3.16
2004 2222 7.287810 AGTTAGTTCAGTTAGTTCCACCATTT 58.712 34.615 0.00 0.00 0.00 2.32
2005 2223 8.434392 AGTTAGTTCAGTTAGTTCCACCATTTA 58.566 33.333 0.00 0.00 0.00 1.40
2006 2224 9.227777 GTTAGTTCAGTTAGTTCCACCATTTAT 57.772 33.333 0.00 0.00 0.00 1.40
2008 2226 8.788325 AGTTCAGTTAGTTCCACCATTTATAC 57.212 34.615 0.00 0.00 0.00 1.47
2010 2228 8.665685 GTTCAGTTAGTTCCACCATTTATACTG 58.334 37.037 0.00 0.00 0.00 2.74
2011 2229 8.141298 TCAGTTAGTTCCACCATTTATACTGA 57.859 34.615 0.00 0.00 36.79 3.41
2013 2231 9.226606 CAGTTAGTTCCACCATTTATACTGAAA 57.773 33.333 0.00 0.00 33.04 2.69
2014 2232 9.802039 AGTTAGTTCCACCATTTATACTGAAAA 57.198 29.630 0.00 0.00 0.00 2.29
2016 2234 9.802039 TTAGTTCCACCATTTATACTGAAAAGT 57.198 29.630 0.00 0.00 0.00 2.66
2018 2236 8.576442 AGTTCCACCATTTATACTGAAAAGTTG 58.424 33.333 0.00 0.00 0.00 3.16
2020 2238 8.472007 TCCACCATTTATACTGAAAAGTTGTT 57.528 30.769 0.00 0.00 0.00 2.83
2021 2239 8.356657 TCCACCATTTATACTGAAAAGTTGTTG 58.643 33.333 0.00 0.00 0.00 3.33
2022 2240 7.116233 CCACCATTTATACTGAAAAGTTGTTGC 59.884 37.037 0.00 0.00 0.00 4.17
2024 2242 7.867403 ACCATTTATACTGAAAAGTTGTTGCTG 59.133 33.333 0.00 0.00 0.00 4.41
2025 2243 7.329226 CCATTTATACTGAAAAGTTGTTGCTGG 59.671 37.037 0.00 0.00 0.00 4.85
2026 2244 7.575414 TTTATACTGAAAAGTTGTTGCTGGA 57.425 32.000 0.00 0.00 0.00 3.86
2027 2245 7.759489 TTATACTGAAAAGTTGTTGCTGGAT 57.241 32.000 0.00 0.00 0.00 3.41
2028 2246 6.655078 ATACTGAAAAGTTGTTGCTGGATT 57.345 33.333 0.00 0.00 0.00 3.01
2029 2247 4.685924 ACTGAAAAGTTGTTGCTGGATTG 58.314 39.130 0.00 0.00 0.00 2.67
2031 2249 4.681744 TGAAAAGTTGTTGCTGGATTGAC 58.318 39.130 0.00 0.00 0.00 3.18
2034 2252 4.942761 AAGTTGTTGCTGGATTGACAAT 57.057 36.364 0.00 0.00 34.86 2.71
2036 2254 3.890756 AGTTGTTGCTGGATTGACAATCA 59.109 39.130 25.59 13.20 39.71 2.57
2038 2256 4.707030 TGTTGCTGGATTGACAATCATC 57.293 40.909 25.59 15.39 39.71 2.92
2039 2257 4.080687 TGTTGCTGGATTGACAATCATCA 58.919 39.130 25.59 17.33 39.71 3.07
2040 2258 4.523558 TGTTGCTGGATTGACAATCATCAA 59.476 37.500 25.59 20.96 42.62 2.57
2095 2325 6.406370 TCAACAATCCTGTTATTCTGTCGAT 58.594 36.000 0.00 0.00 44.15 3.59
2134 2445 7.174253 TGAAAAACTTGTCTTCAGTACACTGTT 59.826 33.333 9.11 0.00 44.12 3.16
2149 2472 3.815401 ACACTGTTATTCTGTGGCACTTC 59.185 43.478 19.83 0.00 45.87 3.01
2155 2478 6.953101 TGTTATTCTGTGGCACTTCCTATAA 58.047 36.000 19.83 11.79 35.26 0.98
2164 2487 5.880332 GTGGCACTTCCTATAAACATCTTCA 59.120 40.000 11.13 0.00 35.26 3.02
2229 2581 4.023291 ACTCTCAGACTCATTTCCCTCTC 58.977 47.826 0.00 0.00 0.00 3.20
2249 2602 7.087639 CCTCTCGTCATCAAATAGGTATCTTC 58.912 42.308 0.00 0.00 0.00 2.87
2251 2604 8.919777 TCTCGTCATCAAATAGGTATCTTCTA 57.080 34.615 0.00 0.00 0.00 2.10
2266 2619 8.373981 AGGTATCTTCTAATGATTGATGACCTG 58.626 37.037 0.00 0.00 30.58 4.00
2395 2748 4.133820 CAGGTGACCATGTTTACAAGACA 58.866 43.478 3.63 0.00 0.00 3.41
2432 2785 2.481185 GACGATGCCGAAACCTTGTTTA 59.519 45.455 0.00 0.00 39.50 2.01
2436 2789 0.239082 GCCGAAACCTTGTTTACCCG 59.761 55.000 0.00 0.00 0.00 5.28
2461 2815 0.184933 CTTTTGGGAGTGTGGGTGGA 59.815 55.000 0.00 0.00 0.00 4.02
2589 2943 4.074970 ACAAGAGATGAATTTGAGCGGTT 58.925 39.130 0.00 0.00 0.00 4.44
2678 3032 3.520721 TGATCTTCCTGCCAATCTCAAGA 59.479 43.478 0.00 0.00 0.00 3.02
2734 3094 2.665537 CCATGAGATCGAAATAGAGCGC 59.334 50.000 0.00 0.00 0.00 5.92
2855 3215 6.430925 CAGAAACTTAATCCAACCATCACAGA 59.569 38.462 0.00 0.00 0.00 3.41
2983 3345 0.773644 AGCAAGATGTTCCACCTGGT 59.226 50.000 0.00 0.00 36.34 4.00
3038 3400 1.748244 GCAGTAAGCATGATCAGGCCA 60.748 52.381 27.42 14.00 44.79 5.36
3281 3643 2.368221 GAGCTAAGATGCCTGGAGACAT 59.632 50.000 0.00 0.00 41.51 3.06
3464 3826 2.208431 CGGACATCATTCAAGAGCTCC 58.792 52.381 10.93 0.00 0.00 4.70
3469 3831 4.184629 ACATCATTCAAGAGCTCCGTAAC 58.815 43.478 10.93 0.00 0.00 2.50
3488 3850 3.806949 ACATGGTAAGCTTGAGGGAAA 57.193 42.857 9.86 0.00 0.00 3.13
3694 4056 0.755698 AGTCGAGTGGTGTGTCTGGT 60.756 55.000 0.00 0.00 0.00 4.00
3730 4092 4.079970 CAGGCCTGAAGCATATGATCATT 58.920 43.478 29.88 0.00 46.50 2.57
3802 4164 0.534412 CGACTGCTGAGAAGGTCCAT 59.466 55.000 0.00 0.00 0.00 3.41
3845 4207 5.789521 TCGTGAATGTTGATAAGAAGACCA 58.210 37.500 0.00 0.00 0.00 4.02
3855 4224 7.544566 TGTTGATAAGAAGACCAACGAATAGAC 59.455 37.037 0.00 0.00 41.08 2.59
3883 4252 3.777465 GCATTGTGCACATCTGATTCT 57.223 42.857 25.78 2.99 44.26 2.40
3903 4280 1.022735 GAGCAAGCATGAGGGATGTG 58.977 55.000 0.00 0.00 34.14 3.21
3905 4282 0.737219 GCAAGCATGAGGGATGTGAC 59.263 55.000 0.00 0.00 34.14 3.67
3915 4292 4.878968 TGAGGGATGTGACATACCTTCTA 58.121 43.478 29.07 16.29 31.33 2.10
3916 4293 4.649674 TGAGGGATGTGACATACCTTCTAC 59.350 45.833 29.07 17.09 31.33 2.59
3917 4294 3.967987 AGGGATGTGACATACCTTCTACC 59.032 47.826 23.63 5.34 0.00 3.18
3924 4301 3.285484 GACATACCTTCTACCGGAGACA 58.715 50.000 9.46 0.00 32.31 3.41
3929 4306 2.168496 CCTTCTACCGGAGACAGTCAA 58.832 52.381 9.46 0.00 32.31 3.18
3945 4323 4.159135 ACAGTCAAGGGCATTTGATGATTC 59.841 41.667 6.90 0.00 39.13 2.52
3946 4324 3.379372 AGTCAAGGGCATTTGATGATTCG 59.621 43.478 6.90 0.00 39.13 3.34
3964 4342 5.818336 TGATTCGTTTCAACACACTTCCTTA 59.182 36.000 0.00 0.00 0.00 2.69
3974 4352 3.311596 ACACACTTCCTTAAACAGCGTTC 59.688 43.478 0.00 0.00 0.00 3.95
3976 4354 3.808174 ACACTTCCTTAAACAGCGTTCTC 59.192 43.478 0.00 0.00 0.00 2.87
3977 4355 3.057734 ACTTCCTTAAACAGCGTTCTCG 58.942 45.455 0.00 0.00 40.37 4.04
3983 4361 4.624024 CCTTAAACAGCGTTCTCGTGATTA 59.376 41.667 0.00 0.00 39.49 1.75
3984 4362 5.119588 CCTTAAACAGCGTTCTCGTGATTAA 59.880 40.000 0.00 0.00 39.49 1.40
3986 4364 4.584029 AACAGCGTTCTCGTGATTAATG 57.416 40.909 0.00 0.00 39.49 1.90
3991 4369 4.798907 AGCGTTCTCGTGATTAATGTAGTG 59.201 41.667 0.00 0.00 39.49 2.74
3999 4377 7.277760 TCTCGTGATTAATGTAGTGAATTGGTG 59.722 37.037 0.00 0.00 0.00 4.17
4000 4378 5.965334 CGTGATTAATGTAGTGAATTGGTGC 59.035 40.000 0.00 0.00 0.00 5.01
4009 4387 7.144722 TGTAGTGAATTGGTGCTTGAATAAG 57.855 36.000 0.00 0.00 36.97 1.73
4026 4404 5.903010 TGAATAAGTGATGCCCCTAGAACTA 59.097 40.000 0.00 0.00 0.00 2.24
4090 4468 4.398988 CCATTGTTACTTGCTTCTATGCCA 59.601 41.667 0.00 0.00 0.00 4.92
4091 4469 5.105797 CCATTGTTACTTGCTTCTATGCCAA 60.106 40.000 0.00 0.00 0.00 4.52
4092 4470 5.627499 TTGTTACTTGCTTCTATGCCAAG 57.373 39.130 0.00 0.00 0.00 3.61
4093 4471 4.651778 TGTTACTTGCTTCTATGCCAAGT 58.348 39.130 9.76 9.76 37.70 3.16
4094 4472 4.455533 TGTTACTTGCTTCTATGCCAAGTG 59.544 41.667 13.66 0.00 36.50 3.16
4095 4473 3.146104 ACTTGCTTCTATGCCAAGTGT 57.854 42.857 4.64 0.00 35.07 3.55
4096 4474 3.490348 ACTTGCTTCTATGCCAAGTGTT 58.510 40.909 4.64 0.00 35.07 3.32
4097 4475 3.891366 ACTTGCTTCTATGCCAAGTGTTT 59.109 39.130 4.64 0.00 35.07 2.83
4098 4476 4.342092 ACTTGCTTCTATGCCAAGTGTTTT 59.658 37.500 4.64 0.00 35.07 2.43
4099 4477 4.241590 TGCTTCTATGCCAAGTGTTTTG 57.758 40.909 0.00 0.00 0.00 2.44
4100 4478 3.888323 TGCTTCTATGCCAAGTGTTTTGA 59.112 39.130 0.00 0.00 0.00 2.69
4101 4479 4.523943 TGCTTCTATGCCAAGTGTTTTGAT 59.476 37.500 0.00 0.00 0.00 2.57
4102 4480 4.860907 GCTTCTATGCCAAGTGTTTTGATG 59.139 41.667 0.00 0.00 0.00 3.07
4103 4481 5.389859 TTCTATGCCAAGTGTTTTGATGG 57.610 39.130 0.00 0.00 0.00 3.51
4104 4482 3.763360 TCTATGCCAAGTGTTTTGATGGG 59.237 43.478 0.00 0.00 0.00 4.00
4105 4483 2.079170 TGCCAAGTGTTTTGATGGGA 57.921 45.000 0.00 0.00 0.00 4.37
4106 4484 1.962807 TGCCAAGTGTTTTGATGGGAG 59.037 47.619 0.00 0.00 0.00 4.30
4107 4485 1.273327 GCCAAGTGTTTTGATGGGAGG 59.727 52.381 0.00 0.00 0.00 4.30
4108 4486 1.895131 CCAAGTGTTTTGATGGGAGGG 59.105 52.381 0.00 0.00 0.00 4.30
4109 4487 2.597455 CAAGTGTTTTGATGGGAGGGT 58.403 47.619 0.00 0.00 0.00 4.34
4110 4488 2.292828 AGTGTTTTGATGGGAGGGTG 57.707 50.000 0.00 0.00 0.00 4.61
4111 4489 1.499007 AGTGTTTTGATGGGAGGGTGT 59.501 47.619 0.00 0.00 0.00 4.16
4112 4490 2.714250 AGTGTTTTGATGGGAGGGTGTA 59.286 45.455 0.00 0.00 0.00 2.90
4113 4491 3.333680 AGTGTTTTGATGGGAGGGTGTAT 59.666 43.478 0.00 0.00 0.00 2.29
4114 4492 3.694566 GTGTTTTGATGGGAGGGTGTATC 59.305 47.826 0.00 0.00 0.00 2.24
4115 4493 3.591527 TGTTTTGATGGGAGGGTGTATCT 59.408 43.478 0.00 0.00 0.00 1.98
4116 4494 4.044065 TGTTTTGATGGGAGGGTGTATCTT 59.956 41.667 0.00 0.00 0.00 2.40
4117 4495 5.251932 TGTTTTGATGGGAGGGTGTATCTTA 59.748 40.000 0.00 0.00 0.00 2.10
4118 4496 5.367945 TTTGATGGGAGGGTGTATCTTAC 57.632 43.478 0.00 0.00 0.00 2.34
4119 4497 4.002256 TGATGGGAGGGTGTATCTTACA 57.998 45.455 0.00 0.00 36.08 2.41
4120 4498 3.967326 TGATGGGAGGGTGTATCTTACAG 59.033 47.826 0.00 0.00 39.77 2.74
4121 4499 3.769189 TGGGAGGGTGTATCTTACAGA 57.231 47.619 0.00 0.00 39.77 3.41
4122 4500 4.069312 TGGGAGGGTGTATCTTACAGAA 57.931 45.455 0.00 0.00 39.77 3.02
4123 4501 4.431378 TGGGAGGGTGTATCTTACAGAAA 58.569 43.478 0.00 0.00 39.77 2.52
4124 4502 4.224370 TGGGAGGGTGTATCTTACAGAAAC 59.776 45.833 0.00 0.00 39.77 2.78
4125 4503 4.470304 GGGAGGGTGTATCTTACAGAAACT 59.530 45.833 0.00 0.00 39.77 2.66
4126 4504 5.045797 GGGAGGGTGTATCTTACAGAAACTT 60.046 44.000 0.00 0.00 39.77 2.66
4127 4505 6.473758 GGAGGGTGTATCTTACAGAAACTTT 58.526 40.000 0.00 0.00 39.77 2.66
4128 4506 7.310858 GGGAGGGTGTATCTTACAGAAACTTTA 60.311 40.741 0.00 0.00 39.77 1.85
4129 4507 8.265764 GGAGGGTGTATCTTACAGAAACTTTAT 58.734 37.037 0.00 0.00 39.77 1.40
4130 4508 9.099454 GAGGGTGTATCTTACAGAAACTTTATG 57.901 37.037 0.00 0.00 39.77 1.90
4131 4509 8.603304 AGGGTGTATCTTACAGAAACTTTATGT 58.397 33.333 6.97 6.97 39.77 2.29
4132 4510 9.227777 GGGTGTATCTTACAGAAACTTTATGTT 57.772 33.333 7.08 0.00 39.77 2.71
4134 4512 9.543018 GTGTATCTTACAGAAACTTTATGTTGC 57.457 33.333 7.08 0.00 39.77 4.17
4135 4513 9.502091 TGTATCTTACAGAAACTTTATGTTGCT 57.498 29.630 7.08 0.00 45.17 3.91
4138 4516 9.899226 ATCTTACAGAAACTTTATGTTGCTTTC 57.101 29.630 7.08 0.00 41.68 2.62
4139 4517 8.898761 TCTTACAGAAACTTTATGTTGCTTTCA 58.101 29.630 7.08 0.00 41.68 2.69
4140 4518 9.173939 CTTACAGAAACTTTATGTTGCTTTCAG 57.826 33.333 7.08 0.00 41.68 3.02
4141 4519 7.100458 ACAGAAACTTTATGTTGCTTTCAGT 57.900 32.000 0.00 0.00 41.68 3.41
4142 4520 7.547227 ACAGAAACTTTATGTTGCTTTCAGTT 58.453 30.769 0.00 0.00 41.68 3.16
4143 4521 8.034804 ACAGAAACTTTATGTTGCTTTCAGTTT 58.965 29.630 0.00 0.00 41.68 2.66
4144 4522 8.534778 CAGAAACTTTATGTTGCTTTCAGTTTC 58.465 33.333 12.03 12.03 41.68 2.78
4145 4523 8.250332 AGAAACTTTATGTTGCTTTCAGTTTCA 58.750 29.630 18.95 0.00 41.68 2.69
4146 4524 7.992180 AACTTTATGTTGCTTTCAGTTTCAG 57.008 32.000 0.00 0.00 37.52 3.02
4147 4525 7.100458 ACTTTATGTTGCTTTCAGTTTCAGT 57.900 32.000 0.00 0.00 0.00 3.41
4148 4526 7.196331 ACTTTATGTTGCTTTCAGTTTCAGTC 58.804 34.615 0.00 0.00 0.00 3.51
4149 4527 6.942532 TTATGTTGCTTTCAGTTTCAGTCT 57.057 33.333 0.00 0.00 0.00 3.24
4150 4528 4.621068 TGTTGCTTTCAGTTTCAGTCTG 57.379 40.909 0.00 0.00 0.00 3.51
4151 4529 4.260985 TGTTGCTTTCAGTTTCAGTCTGA 58.739 39.130 0.00 0.00 39.71 3.27
4152 4530 4.699735 TGTTGCTTTCAGTTTCAGTCTGAA 59.300 37.500 11.36 11.36 46.01 3.02
4164 4542 8.865001 CAGTTTCAGTCTGAAAACTATACTAGC 58.135 37.037 25.87 11.89 46.53 3.42
4165 4543 8.585881 AGTTTCAGTCTGAAAACTATACTAGCA 58.414 33.333 25.87 0.63 46.53 3.49
4166 4544 9.204570 GTTTCAGTCTGAAAACTATACTAGCAA 57.795 33.333 25.87 0.21 46.53 3.91
4167 4545 9.772973 TTTCAGTCTGAAAACTATACTAGCAAA 57.227 29.630 22.87 0.00 42.72 3.68
4168 4546 9.944376 TTCAGTCTGAAAACTATACTAGCAAAT 57.056 29.630 13.00 0.00 32.71 2.32
4169 4547 9.371136 TCAGTCTGAAAACTATACTAGCAAATG 57.629 33.333 0.00 0.00 0.00 2.32
4170 4548 9.371136 CAGTCTGAAAACTATACTAGCAAATGA 57.629 33.333 0.00 0.00 0.00 2.57
4171 4549 9.372369 AGTCTGAAAACTATACTAGCAAATGAC 57.628 33.333 0.00 0.00 0.00 3.06
4172 4550 8.604890 GTCTGAAAACTATACTAGCAAATGACC 58.395 37.037 0.00 0.00 0.00 4.02
4173 4551 7.769044 TCTGAAAACTATACTAGCAAATGACCC 59.231 37.037 0.00 0.00 0.00 4.46
4174 4552 7.630082 TGAAAACTATACTAGCAAATGACCCT 58.370 34.615 0.00 0.00 0.00 4.34
4175 4553 7.552687 TGAAAACTATACTAGCAAATGACCCTG 59.447 37.037 0.00 0.00 0.00 4.45
4176 4554 4.962155 ACTATACTAGCAAATGACCCTGC 58.038 43.478 0.00 0.00 38.91 4.85
4177 4555 3.931907 ATACTAGCAAATGACCCTGCA 57.068 42.857 0.00 0.00 41.17 4.41
4178 4556 1.826385 ACTAGCAAATGACCCTGCAC 58.174 50.000 0.00 0.00 41.17 4.57
4179 4557 0.729116 CTAGCAAATGACCCTGCACG 59.271 55.000 0.00 0.00 41.17 5.34
4180 4558 0.676466 TAGCAAATGACCCTGCACGG 60.676 55.000 0.00 0.00 41.17 4.94
4181 4559 1.971167 GCAAATGACCCTGCACGGA 60.971 57.895 8.88 0.00 38.48 4.69
4182 4560 1.926511 GCAAATGACCCTGCACGGAG 61.927 60.000 8.88 0.00 38.48 4.63
4184 4562 0.110486 AAATGACCCTGCACGGAGTT 59.890 50.000 8.88 0.00 41.61 3.01
4185 4563 0.321653 AATGACCCTGCACGGAGTTC 60.322 55.000 8.88 0.00 41.61 3.01
4186 4564 2.432628 GACCCTGCACGGAGTTCG 60.433 66.667 8.88 0.00 41.61 3.95
4197 4575 2.649331 CGGAGTTCGTGTGAATACCT 57.351 50.000 0.00 0.00 36.29 3.08
4218 4596 6.456501 ACCTTATATGTAAGTCGCCTGAATC 58.543 40.000 8.25 0.00 36.40 2.52
4243 4622 9.087871 TCTTGAATTTGGGTCATTCAATTTCTA 57.912 29.630 8.19 0.00 45.33 2.10
4248 4627 4.513442 TGGGTCATTCAATTTCTAGACCG 58.487 43.478 0.00 0.00 44.89 4.79
4269 4648 4.394300 CCGTTGATTCTTGCTCTGAGATTT 59.606 41.667 9.28 0.00 0.00 2.17
4273 4652 5.311265 TGATTCTTGCTCTGAGATTTGTGT 58.689 37.500 9.28 0.00 0.00 3.72
4305 4684 4.502105 TTTGCTGGGCTGTTATATGAGA 57.498 40.909 0.00 0.00 0.00 3.27
4317 4698 6.508030 TGTTATATGAGATGGTTTGGGCTA 57.492 37.500 0.00 0.00 0.00 3.93
4368 4750 2.821969 CAGTCAATTTGCTACTGGGCTT 59.178 45.455 9.35 0.00 37.55 4.35
4445 4852 7.491048 TCTGTTTTTATGTGTTTCTCCTTTTGC 59.509 33.333 0.00 0.00 0.00 3.68
4455 4862 7.657761 TGTGTTTCTCCTTTTGCTTTTTGTTTA 59.342 29.630 0.00 0.00 0.00 2.01
4598 5008 7.539436 TGTTGTTTGCATACTACAAAAAGTGA 58.461 30.769 18.68 0.00 38.64 3.41
4626 5036 4.539509 AAAGCAATGTTGTGTGCAATTG 57.460 36.364 0.00 0.00 43.42 2.32
4629 5039 4.691175 AGCAATGTTGTGTGCAATTGTTA 58.309 34.783 7.40 0.00 43.42 2.41
4630 5040 5.114780 AGCAATGTTGTGTGCAATTGTTAA 58.885 33.333 7.40 0.00 43.42 2.01
4633 5043 6.456718 GCAATGTTGTGTGCAATTGTTAACTT 60.457 34.615 7.40 2.22 40.58 2.66
4634 5044 7.462731 CAATGTTGTGTGCAATTGTTAACTTT 58.537 30.769 7.40 7.29 36.92 2.66
4635 5045 6.639671 TGTTGTGTGCAATTGTTAACTTTC 57.360 33.333 7.40 0.00 36.92 2.62
4636 5046 6.393990 TGTTGTGTGCAATTGTTAACTTTCT 58.606 32.000 7.40 0.00 36.92 2.52
4637 5047 6.870965 TGTTGTGTGCAATTGTTAACTTTCTT 59.129 30.769 7.40 0.00 36.92 2.52
4756 5181 7.812306 TCATTTTATTTCCTCCCTAAGGGTAG 58.188 38.462 0.00 0.00 46.23 3.18
4760 5185 4.697802 TTTCCTCCCTAAGGGTAGTACA 57.302 45.455 2.06 0.00 46.23 2.90
4761 5186 4.913154 TTCCTCCCTAAGGGTAGTACAT 57.087 45.455 2.06 0.00 46.23 2.29
4763 5189 5.230746 TCCTCCCTAAGGGTAGTACATTT 57.769 43.478 2.06 0.00 46.23 2.32
4771 5197 7.270779 CCTAAGGGTAGTACATTTCCACTAAC 58.729 42.308 2.06 0.00 34.76 2.34
4781 5207 8.164070 AGTACATTTCCACTAACTCATTCCTTT 58.836 33.333 0.00 0.00 0.00 3.11
4791 5222 9.846248 CACTAACTCATTCCTTTTTAGGATTTG 57.154 33.333 0.00 0.00 37.87 2.32
4830 5261 8.993121 CCTCTATTATACGTCAATTCTTGCATT 58.007 33.333 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.371758 CGCGACCTATCCATCACCG 60.372 63.158 0.00 0.00 0.00 4.94
33 34 2.821366 TCGTAGGAGTCCGCGACC 60.821 66.667 22.08 5.52 33.01 4.79
105 106 2.657143 GAAGAGTAGACCACGGGAGAT 58.343 52.381 0.00 0.00 0.00 2.75
143 144 2.128035 GATATGACCCGTGAAGCGAAG 58.872 52.381 0.00 0.00 44.77 3.79
146 147 0.248907 ACGATATGACCCGTGAAGCG 60.249 55.000 0.00 0.00 37.64 4.68
154 155 1.611977 TGATCACCGACGATATGACCC 59.388 52.381 0.00 0.00 0.00 4.46
159 160 3.191581 GTCTCCATGATCACCGACGATAT 59.808 47.826 0.00 0.00 0.00 1.63
162 163 0.738975 GTCTCCATGATCACCGACGA 59.261 55.000 0.00 0.00 0.00 4.20
165 166 2.016393 GCCGTCTCCATGATCACCGA 62.016 60.000 0.00 0.00 0.00 4.69
181 182 4.570663 GTCGTCCTCCATCCGCCG 62.571 72.222 0.00 0.00 0.00 6.46
228 229 0.917333 CCTGCCCCCAAACCTACCTA 60.917 60.000 0.00 0.00 0.00 3.08
229 230 2.238701 CCTGCCCCCAAACCTACCT 61.239 63.158 0.00 0.00 0.00 3.08
230 231 2.359011 CCTGCCCCCAAACCTACC 59.641 66.667 0.00 0.00 0.00 3.18
289 292 7.441157 ACATGACGGATTTCATACAAATACGAT 59.559 33.333 16.59 3.40 44.43 3.73
314 317 3.242511 ACGCGGCCGAATTTCTTATAAAC 60.243 43.478 33.48 4.17 38.29 2.01
328 331 3.681961 ATTCATGCAAACGCGGCCG 62.682 57.895 24.05 24.05 41.14 6.13
339 342 5.927689 TCAACAAACTGGATGAAATTCATGC 59.072 36.000 18.66 18.66 44.22 4.06
354 357 9.271828 ACATTTCAAACTCTTTTTCAACAAACT 57.728 25.926 0.00 0.00 0.00 2.66
390 393 1.526887 GGAGGTCGCCATCCAATCA 59.473 57.895 0.00 0.00 35.54 2.57
403 406 3.771160 GACACGGATGCGGGAGGT 61.771 66.667 18.37 5.46 0.00 3.85
445 448 0.981183 ATCTCCAACAGTAACCCGCA 59.019 50.000 0.00 0.00 0.00 5.69
446 449 1.369625 CATCTCCAACAGTAACCCGC 58.630 55.000 0.00 0.00 0.00 6.13
447 450 1.369625 GCATCTCCAACAGTAACCCG 58.630 55.000 0.00 0.00 0.00 5.28
526 529 5.237996 CACATCTGGTCTTTGCATATGTAGG 59.762 44.000 4.29 0.00 0.00 3.18
527 530 5.819379 ACACATCTGGTCTTTGCATATGTAG 59.181 40.000 4.29 0.35 0.00 2.74
530 533 4.397103 ACACACATCTGGTCTTTGCATATG 59.603 41.667 0.00 0.00 0.00 1.78
547 550 6.761099 AGGTACAAACACAATAAACACACA 57.239 33.333 0.00 0.00 0.00 3.72
553 556 8.919145 AGGATCAAAAGGTACAAACACAATAAA 58.081 29.630 0.00 0.00 0.00 1.40
612 615 4.035684 GCTTCAAACAACGTCTCTTTTCC 58.964 43.478 0.00 0.00 0.00 3.13
613 616 3.719352 CGCTTCAAACAACGTCTCTTTTC 59.281 43.478 0.00 0.00 0.00 2.29
614 617 3.372822 TCGCTTCAAACAACGTCTCTTTT 59.627 39.130 0.00 0.00 0.00 2.27
630 633 1.293924 CATGGTCCACTCATCGCTTC 58.706 55.000 0.00 0.00 0.00 3.86
631 634 0.615331 ACATGGTCCACTCATCGCTT 59.385 50.000 0.00 0.00 0.00 4.68
633 636 1.131126 CAAACATGGTCCACTCATCGC 59.869 52.381 0.00 0.00 0.00 4.58
635 638 5.245531 TCTTACAAACATGGTCCACTCATC 58.754 41.667 0.00 0.00 0.00 2.92
637 640 4.698201 TCTTACAAACATGGTCCACTCA 57.302 40.909 0.00 0.00 0.00 3.41
638 641 6.385649 TTTTCTTACAAACATGGTCCACTC 57.614 37.500 0.00 0.00 0.00 3.51
640 643 6.334202 TGTTTTTCTTACAAACATGGTCCAC 58.666 36.000 0.00 0.00 38.84 4.02
653 719 9.967245 GTCCAAATCAAAAACTGTTTTTCTTAC 57.033 29.630 24.13 13.58 40.65 2.34
656 722 8.667463 CATGTCCAAATCAAAAACTGTTTTTCT 58.333 29.630 24.13 14.06 40.65 2.52
706 772 9.850628 GCCCGATACTTCTTTAACTTTTTAAAT 57.149 29.630 0.00 0.00 36.73 1.40
707 773 8.298854 GGCCCGATACTTCTTTAACTTTTTAAA 58.701 33.333 0.00 0.00 36.09 1.52
720 786 0.981183 TGTGTTGGCCCGATACTTCT 59.019 50.000 0.00 0.00 0.00 2.85
721 787 1.338769 ACTGTGTTGGCCCGATACTTC 60.339 52.381 0.00 0.00 0.00 3.01
794 860 7.397192 CCCAGAATGAAAAATCTCCCTAGAAAA 59.603 37.037 0.00 0.00 39.69 2.29
798 864 5.103940 TCCCCAGAATGAAAAATCTCCCTAG 60.104 44.000 0.00 0.00 39.69 3.02
799 865 4.793520 TCCCCAGAATGAAAAATCTCCCTA 59.206 41.667 0.00 0.00 39.69 3.53
820 886 0.520404 CACACTTCACAGCAGCATCC 59.480 55.000 0.00 0.00 0.00 3.51
849 915 2.094752 GTGGGTGCGCAAATATTTCTGT 60.095 45.455 14.00 0.00 0.00 3.41
852 918 1.203523 TGGTGGGTGCGCAAATATTTC 59.796 47.619 14.00 0.00 0.00 2.17
855 921 1.653094 CGTGGTGGGTGCGCAAATAT 61.653 55.000 14.00 0.00 0.00 1.28
944 1011 1.064463 TCTGGATCTGGATTTGTGGGC 60.064 52.381 0.00 0.00 0.00 5.36
1110 1187 1.975327 CTCGTCCTGGAAGAAGGCA 59.025 57.895 13.29 0.00 37.24 4.75
1124 1201 0.247736 GTTCATGGTCCTCAGCTCGT 59.752 55.000 0.00 0.00 0.00 4.18
1626 1833 3.496131 CCCGCGTTGACCAATCGG 61.496 66.667 4.92 14.88 38.29 4.18
1627 1834 3.496131 CCCCGCGTTGACCAATCG 61.496 66.667 4.92 0.00 0.00 3.34
1629 1838 0.250814 TAAACCCCGCGTTGACCAAT 60.251 50.000 4.92 0.00 33.93 3.16
1731 1949 2.187946 CCAGCATCACCTCGTCCC 59.812 66.667 0.00 0.00 0.00 4.46
1780 1998 4.070630 ACCTCTTATCTTGCAGATGCTC 57.929 45.455 6.35 0.00 42.66 4.26
1804 2022 8.567948 GGTCGATGATTGTCAATATAAATGGTT 58.432 33.333 0.00 0.00 0.00 3.67
1805 2023 7.719193 TGGTCGATGATTGTCAATATAAATGGT 59.281 33.333 0.00 0.00 0.00 3.55
1806 2024 8.017373 GTGGTCGATGATTGTCAATATAAATGG 58.983 37.037 0.00 0.00 0.00 3.16
1807 2025 8.017373 GGTGGTCGATGATTGTCAATATAAATG 58.983 37.037 0.00 0.00 0.00 2.32
1808 2026 7.719193 TGGTGGTCGATGATTGTCAATATAAAT 59.281 33.333 0.00 0.00 0.00 1.40
1809 2027 7.051000 TGGTGGTCGATGATTGTCAATATAAA 58.949 34.615 0.00 0.00 0.00 1.40
1810 2028 6.587273 TGGTGGTCGATGATTGTCAATATAA 58.413 36.000 0.00 0.00 0.00 0.98
1811 2029 6.168270 TGGTGGTCGATGATTGTCAATATA 57.832 37.500 0.00 0.00 0.00 0.86
1812 2030 5.034852 TGGTGGTCGATGATTGTCAATAT 57.965 39.130 0.00 0.00 0.00 1.28
1813 2031 4.479786 TGGTGGTCGATGATTGTCAATA 57.520 40.909 0.00 0.00 0.00 1.90
1814 2032 3.348647 TGGTGGTCGATGATTGTCAAT 57.651 42.857 0.00 0.00 0.00 2.57
1815 2033 2.849294 TGGTGGTCGATGATTGTCAA 57.151 45.000 0.00 0.00 0.00 3.18
1816 2034 3.348647 AATGGTGGTCGATGATTGTCA 57.651 42.857 0.00 0.00 0.00 3.58
1817 2035 5.751680 CATAAATGGTGGTCGATGATTGTC 58.248 41.667 0.00 0.00 0.00 3.18
1818 2036 4.036734 GCATAAATGGTGGTCGATGATTGT 59.963 41.667 0.00 0.00 0.00 2.71
1819 2037 4.276678 AGCATAAATGGTGGTCGATGATTG 59.723 41.667 0.00 0.00 37.10 2.67
1820 2038 4.464008 AGCATAAATGGTGGTCGATGATT 58.536 39.130 0.00 0.00 37.10 2.57
1821 2039 4.090761 AGCATAAATGGTGGTCGATGAT 57.909 40.909 0.00 0.00 37.10 2.45
1822 2040 3.558931 AGCATAAATGGTGGTCGATGA 57.441 42.857 0.00 0.00 37.10 2.92
1831 2049 6.372381 GGAGCAAAATTTTCAGCATAAATGGT 59.628 34.615 13.78 0.80 39.42 3.55
1832 2050 6.372103 TGGAGCAAAATTTTCAGCATAAATGG 59.628 34.615 13.78 0.00 0.00 3.16
1833 2051 7.118680 ACTGGAGCAAAATTTTCAGCATAAATG 59.881 33.333 14.17 0.00 0.00 2.32
1834 2052 7.163441 ACTGGAGCAAAATTTTCAGCATAAAT 58.837 30.769 14.17 0.00 0.00 1.40
1835 2053 6.523840 ACTGGAGCAAAATTTTCAGCATAAA 58.476 32.000 14.17 0.17 0.00 1.40
1836 2054 6.100404 ACTGGAGCAAAATTTTCAGCATAA 57.900 33.333 14.17 1.50 0.00 1.90
1837 2055 5.726980 ACTGGAGCAAAATTTTCAGCATA 57.273 34.783 14.17 2.39 0.00 3.14
1838 2056 4.612264 ACTGGAGCAAAATTTTCAGCAT 57.388 36.364 14.17 2.58 0.00 3.79
1839 2057 4.584325 AGTACTGGAGCAAAATTTTCAGCA 59.416 37.500 14.17 2.82 0.00 4.41
1840 2058 4.919754 CAGTACTGGAGCAAAATTTTCAGC 59.080 41.667 15.49 10.16 0.00 4.26
1841 2059 6.317789 TCAGTACTGGAGCAAAATTTTCAG 57.682 37.500 22.48 13.14 0.00 3.02
1842 2060 6.545666 TCTTCAGTACTGGAGCAAAATTTTCA 59.454 34.615 24.38 2.27 36.14 2.69
1843 2061 6.970484 TCTTCAGTACTGGAGCAAAATTTTC 58.030 36.000 24.38 0.00 36.14 2.29
1844 2062 6.959639 TCTTCAGTACTGGAGCAAAATTTT 57.040 33.333 24.38 0.00 36.14 1.82
1845 2063 6.959639 TTCTTCAGTACTGGAGCAAAATTT 57.040 33.333 24.38 0.00 36.14 1.82
1846 2064 6.959639 TTTCTTCAGTACTGGAGCAAAATT 57.040 33.333 24.38 0.00 36.14 1.82
1847 2065 6.491403 ACATTTCTTCAGTACTGGAGCAAAAT 59.509 34.615 24.38 21.07 36.14 1.82
1848 2066 5.827797 ACATTTCTTCAGTACTGGAGCAAAA 59.172 36.000 24.38 19.93 36.14 2.44
1849 2067 5.376625 ACATTTCTTCAGTACTGGAGCAAA 58.623 37.500 24.38 22.45 36.14 3.68
1850 2068 4.973168 ACATTTCTTCAGTACTGGAGCAA 58.027 39.130 24.38 20.71 36.14 3.91
1851 2069 4.284490 AGACATTTCTTCAGTACTGGAGCA 59.716 41.667 24.38 12.87 36.14 4.26
1852 2070 4.826556 AGACATTTCTTCAGTACTGGAGC 58.173 43.478 24.38 10.63 36.14 4.70
1865 2083 9.646427 GAATAAGAGTGTACTGAAGACATTTCT 57.354 33.333 0.00 0.00 0.00 2.52
1866 2084 9.646427 AGAATAAGAGTGTACTGAAGACATTTC 57.354 33.333 0.00 0.00 0.00 2.17
1867 2085 9.429359 CAGAATAAGAGTGTACTGAAGACATTT 57.571 33.333 0.00 0.00 0.00 2.32
1868 2086 8.589338 ACAGAATAAGAGTGTACTGAAGACATT 58.411 33.333 0.00 0.00 0.00 2.71
1869 2087 8.031864 CACAGAATAAGAGTGTACTGAAGACAT 58.968 37.037 0.00 0.00 0.00 3.06
1870 2088 7.371159 CACAGAATAAGAGTGTACTGAAGACA 58.629 38.462 0.00 0.00 0.00 3.41
1871 2089 6.809196 CCACAGAATAAGAGTGTACTGAAGAC 59.191 42.308 0.00 0.00 0.00 3.01
1872 2090 6.572509 GCCACAGAATAAGAGTGTACTGAAGA 60.573 42.308 0.00 0.00 0.00 2.87
1873 2091 5.578727 GCCACAGAATAAGAGTGTACTGAAG 59.421 44.000 0.00 0.00 0.00 3.02
1874 2092 5.011635 TGCCACAGAATAAGAGTGTACTGAA 59.988 40.000 0.00 0.00 0.00 3.02
1875 2093 4.526650 TGCCACAGAATAAGAGTGTACTGA 59.473 41.667 0.00 0.00 0.00 3.41
1876 2094 4.820897 TGCCACAGAATAAGAGTGTACTG 58.179 43.478 0.00 0.00 0.00 2.74
1877 2095 5.683876 ATGCCACAGAATAAGAGTGTACT 57.316 39.130 0.00 0.00 0.00 2.73
1878 2096 8.979574 GTAATATGCCACAGAATAAGAGTGTAC 58.020 37.037 0.00 0.00 0.00 2.90
1879 2097 8.924303 AGTAATATGCCACAGAATAAGAGTGTA 58.076 33.333 0.00 0.00 0.00 2.90
1880 2098 7.796054 AGTAATATGCCACAGAATAAGAGTGT 58.204 34.615 0.00 0.00 0.00 3.55
1881 2099 8.147058 AGAGTAATATGCCACAGAATAAGAGTG 58.853 37.037 0.00 0.00 0.00 3.51
1882 2100 8.256356 AGAGTAATATGCCACAGAATAAGAGT 57.744 34.615 0.00 0.00 0.00 3.24
1887 2105 9.219603 GCAAATAGAGTAATATGCCACAGAATA 57.780 33.333 0.00 0.00 0.00 1.75
1888 2106 7.941238 AGCAAATAGAGTAATATGCCACAGAAT 59.059 33.333 0.00 0.00 34.44 2.40
1889 2107 7.282585 AGCAAATAGAGTAATATGCCACAGAA 58.717 34.615 0.00 0.00 34.44 3.02
1890 2108 6.830912 AGCAAATAGAGTAATATGCCACAGA 58.169 36.000 0.00 0.00 34.44 3.41
1891 2109 8.607441 TTAGCAAATAGAGTAATATGCCACAG 57.393 34.615 0.00 0.00 34.44 3.66
1892 2110 9.573166 AATTAGCAAATAGAGTAATATGCCACA 57.427 29.630 0.00 0.00 34.44 4.17
1894 2112 8.935844 CGAATTAGCAAATAGAGTAATATGCCA 58.064 33.333 0.00 0.00 34.44 4.92
1895 2113 9.151471 TCGAATTAGCAAATAGAGTAATATGCC 57.849 33.333 0.00 0.00 34.44 4.40
1902 2120 9.424319 GGATTGATCGAATTAGCAAATAGAGTA 57.576 33.333 0.00 0.00 0.00 2.59
1903 2121 7.933577 TGGATTGATCGAATTAGCAAATAGAGT 59.066 33.333 0.00 0.00 0.00 3.24
1904 2122 8.226448 GTGGATTGATCGAATTAGCAAATAGAG 58.774 37.037 0.00 0.00 0.00 2.43
1918 2136 6.582636 AGTAATAGCAAAGTGGATTGATCGA 58.417 36.000 0.00 0.00 30.47 3.59
1919 2137 6.703607 AGAGTAATAGCAAAGTGGATTGATCG 59.296 38.462 0.00 0.00 30.47 3.69
1920 2138 8.983724 GTAGAGTAATAGCAAAGTGGATTGATC 58.016 37.037 0.00 0.00 30.47 2.92
1921 2139 8.709308 AGTAGAGTAATAGCAAAGTGGATTGAT 58.291 33.333 0.00 0.00 32.89 2.57
1922 2140 8.079211 AGTAGAGTAATAGCAAAGTGGATTGA 57.921 34.615 0.00 0.00 31.84 2.57
1923 2141 7.439655 GGAGTAGAGTAATAGCAAAGTGGATTG 59.560 40.741 0.00 0.00 0.00 2.67
1924 2142 7.125811 TGGAGTAGAGTAATAGCAAAGTGGATT 59.874 37.037 0.00 0.00 0.00 3.01
1925 2143 6.611642 TGGAGTAGAGTAATAGCAAAGTGGAT 59.388 38.462 0.00 0.00 0.00 3.41
1926 2144 5.955959 TGGAGTAGAGTAATAGCAAAGTGGA 59.044 40.000 0.00 0.00 0.00 4.02
1927 2145 6.222038 TGGAGTAGAGTAATAGCAAAGTGG 57.778 41.667 0.00 0.00 0.00 4.00
1928 2146 7.492524 TGATGGAGTAGAGTAATAGCAAAGTG 58.507 38.462 0.00 0.00 0.00 3.16
1929 2147 7.661536 TGATGGAGTAGAGTAATAGCAAAGT 57.338 36.000 0.00 0.00 0.00 2.66
1930 2148 9.202273 GATTGATGGAGTAGAGTAATAGCAAAG 57.798 37.037 0.00 0.00 0.00 2.77
1931 2149 8.150945 GGATTGATGGAGTAGAGTAATAGCAAA 58.849 37.037 0.00 0.00 0.00 3.68
1932 2150 7.290014 TGGATTGATGGAGTAGAGTAATAGCAA 59.710 37.037 0.00 0.00 0.00 3.91
1933 2151 6.782494 TGGATTGATGGAGTAGAGTAATAGCA 59.218 38.462 0.00 0.00 0.00 3.49
1934 2152 7.233389 TGGATTGATGGAGTAGAGTAATAGC 57.767 40.000 0.00 0.00 0.00 2.97
1937 2155 8.717717 TGAAATGGATTGATGGAGTAGAGTAAT 58.282 33.333 0.00 0.00 0.00 1.89
1938 2156 8.089625 TGAAATGGATTGATGGAGTAGAGTAA 57.910 34.615 0.00 0.00 0.00 2.24
1939 2157 7.675161 TGAAATGGATTGATGGAGTAGAGTA 57.325 36.000 0.00 0.00 0.00 2.59
1940 2158 6.566079 TGAAATGGATTGATGGAGTAGAGT 57.434 37.500 0.00 0.00 0.00 3.24
1941 2159 8.350722 CAATTGAAATGGATTGATGGAGTAGAG 58.649 37.037 0.00 0.00 35.74 2.43
1942 2160 7.835682 ACAATTGAAATGGATTGATGGAGTAGA 59.164 33.333 13.59 0.00 36.87 2.59
1943 2161 8.004087 ACAATTGAAATGGATTGATGGAGTAG 57.996 34.615 13.59 0.00 36.87 2.57
1944 2162 7.959658 ACAATTGAAATGGATTGATGGAGTA 57.040 32.000 13.59 0.00 36.87 2.59
1945 2163 6.862469 ACAATTGAAATGGATTGATGGAGT 57.138 33.333 13.59 0.00 36.87 3.85
1946 2164 8.472413 AGTAACAATTGAAATGGATTGATGGAG 58.528 33.333 13.59 0.00 36.87 3.86
1983 2201 8.603304 AGTATAAATGGTGGAACTAACTGAACT 58.397 33.333 0.00 0.00 36.74 3.01
1984 2202 8.665685 CAGTATAAATGGTGGAACTAACTGAAC 58.334 37.037 0.00 0.00 36.74 3.18
1985 2203 8.598916 TCAGTATAAATGGTGGAACTAACTGAA 58.401 33.333 0.00 0.00 37.33 3.02
1986 2204 8.141298 TCAGTATAAATGGTGGAACTAACTGA 57.859 34.615 0.00 0.00 37.78 3.41
1988 2206 9.802039 TTTTCAGTATAAATGGTGGAACTAACT 57.198 29.630 0.00 0.00 36.74 2.24
1990 2208 9.802039 ACTTTTCAGTATAAATGGTGGAACTAA 57.198 29.630 0.00 0.00 36.74 2.24
1991 2209 9.802039 AACTTTTCAGTATAAATGGTGGAACTA 57.198 29.630 0.00 0.00 31.43 2.24
1993 2211 8.357402 ACAACTTTTCAGTATAAATGGTGGAAC 58.643 33.333 0.00 0.00 36.20 3.62
1994 2212 8.472007 ACAACTTTTCAGTATAAATGGTGGAA 57.528 30.769 0.00 0.00 36.20 3.53
1995 2213 8.356657 CAACAACTTTTCAGTATAAATGGTGGA 58.643 33.333 0.00 0.00 36.20 4.02
1996 2214 7.116233 GCAACAACTTTTCAGTATAAATGGTGG 59.884 37.037 0.00 0.00 36.20 4.61
1997 2215 7.867403 AGCAACAACTTTTCAGTATAAATGGTG 59.133 33.333 0.00 0.00 37.28 4.17
1999 2217 7.329226 CCAGCAACAACTTTTCAGTATAAATGG 59.671 37.037 0.00 0.00 30.68 3.16
2000 2218 8.081633 TCCAGCAACAACTTTTCAGTATAAATG 58.918 33.333 0.00 0.00 30.68 2.32
2001 2219 8.177119 TCCAGCAACAACTTTTCAGTATAAAT 57.823 30.769 0.00 0.00 30.68 1.40
2002 2220 7.575414 TCCAGCAACAACTTTTCAGTATAAA 57.425 32.000 0.00 0.00 30.68 1.40
2003 2221 7.759489 ATCCAGCAACAACTTTTCAGTATAA 57.241 32.000 0.00 0.00 30.68 0.98
2004 2222 7.446931 TCAATCCAGCAACAACTTTTCAGTATA 59.553 33.333 0.00 0.00 30.68 1.47
2005 2223 6.265196 TCAATCCAGCAACAACTTTTCAGTAT 59.735 34.615 0.00 0.00 30.68 2.12
2006 2224 5.592282 TCAATCCAGCAACAACTTTTCAGTA 59.408 36.000 0.00 0.00 30.68 2.74
2008 2226 4.741676 GTCAATCCAGCAACAACTTTTCAG 59.258 41.667 0.00 0.00 0.00 3.02
2010 2228 4.681744 TGTCAATCCAGCAACAACTTTTC 58.318 39.130 0.00 0.00 0.00 2.29
2011 2229 4.734398 TGTCAATCCAGCAACAACTTTT 57.266 36.364 0.00 0.00 0.00 2.27
2013 2231 4.341806 TGATTGTCAATCCAGCAACAACTT 59.658 37.500 20.41 0.00 37.09 2.66
2014 2232 3.890756 TGATTGTCAATCCAGCAACAACT 59.109 39.130 20.41 0.00 37.09 3.16
2015 2233 4.241590 TGATTGTCAATCCAGCAACAAC 57.758 40.909 20.41 0.00 37.09 3.32
2016 2234 4.523558 TGATGATTGTCAATCCAGCAACAA 59.476 37.500 20.41 2.34 37.09 2.83
2018 2236 4.707030 TGATGATTGTCAATCCAGCAAC 57.293 40.909 20.41 4.63 37.09 4.17
2020 2238 3.444742 GGTTGATGATTGTCAATCCAGCA 59.555 43.478 20.41 14.69 39.99 4.41
2021 2239 3.444742 TGGTTGATGATTGTCAATCCAGC 59.555 43.478 20.41 14.05 38.22 4.85
2022 2240 4.142315 GGTGGTTGATGATTGTCAATCCAG 60.142 45.833 20.41 0.00 38.22 3.86
2024 2242 3.763360 TGGTGGTTGATGATTGTCAATCC 59.237 43.478 20.41 8.58 38.22 3.01
2025 2243 5.587388 ATGGTGGTTGATGATTGTCAATC 57.413 39.130 17.21 17.21 39.99 2.67
2026 2244 6.363167 AAATGGTGGTTGATGATTGTCAAT 57.637 33.333 0.00 0.00 39.99 2.57
2027 2245 5.804944 AAATGGTGGTTGATGATTGTCAA 57.195 34.783 0.00 0.00 35.84 3.18
2028 2246 6.627731 GCATAAATGGTGGTTGATGATTGTCA 60.628 38.462 0.00 0.00 0.00 3.58
2029 2247 5.750067 GCATAAATGGTGGTTGATGATTGTC 59.250 40.000 0.00 0.00 0.00 3.18
2031 2249 5.909477 AGCATAAATGGTGGTTGATGATTG 58.091 37.500 0.00 0.00 37.10 2.67
2115 2345 7.653713 ACAGAATAACAGTGTACTGAAGACAAG 59.346 37.037 18.18 6.20 46.59 3.16
2134 2445 6.953101 TGTTTATAGGAAGTGCCACAGAATA 58.047 36.000 0.00 0.00 40.02 1.75
2155 2478 8.515414 GCAGGACTAAGTTTTATTGAAGATGTT 58.485 33.333 0.00 0.00 0.00 2.71
2164 2487 7.021998 AGAGGAAGCAGGACTAAGTTTTATT 57.978 36.000 0.00 0.00 0.00 1.40
2213 2549 2.808919 TGACGAGAGGGAAATGAGTCT 58.191 47.619 0.00 0.00 0.00 3.24
2229 2581 9.914131 TCATTAGAAGATACCTATTTGATGACG 57.086 33.333 0.00 0.00 0.00 4.35
2249 2602 5.526479 CACTCCACAGGTCATCAATCATTAG 59.474 44.000 0.00 0.00 0.00 1.73
2251 2604 4.263639 ACACTCCACAGGTCATCAATCATT 60.264 41.667 0.00 0.00 0.00 2.57
2263 2616 1.949525 CAGGTTTGAACACTCCACAGG 59.050 52.381 0.00 0.00 0.00 4.00
2266 2619 1.133915 TCCCAGGTTTGAACACTCCAC 60.134 52.381 0.00 0.00 0.00 4.02
2406 2759 0.454452 GGTTTCGGCATCGTCTTTGC 60.454 55.000 0.00 0.00 39.41 3.68
2408 2761 1.535462 CAAGGTTTCGGCATCGTCTTT 59.465 47.619 0.00 0.00 37.69 2.52
2432 2785 0.036875 CTCCCAAAAGCTCTTCGGGT 59.963 55.000 13.59 0.00 36.85 5.28
2436 2789 1.882623 CCACACTCCCAAAAGCTCTTC 59.117 52.381 0.00 0.00 0.00 2.87
2461 2815 0.979187 CCTTCAAATGGGCAGGGCAT 60.979 55.000 0.00 0.00 0.00 4.40
2557 2911 1.083806 CATCTCTTGTGCGCGCCTTA 61.084 55.000 30.77 12.16 0.00 2.69
2589 2943 1.220749 GTGCGCCATTCCAGTCCTA 59.779 57.895 4.18 0.00 0.00 2.94
2855 3215 2.759839 TGGGTGCCATCATGATTCAT 57.240 45.000 5.16 0.00 0.00 2.57
2884 3246 6.275494 TCGTGTATTACTGGATGAAGAACA 57.725 37.500 0.00 0.00 0.00 3.18
2974 3336 0.327924 CAGTGCCATTACCAGGTGGA 59.672 55.000 0.76 0.00 37.72 4.02
2983 3345 1.216977 CCGTCGGACAGTGCCATTA 59.783 57.895 4.91 0.00 0.00 1.90
3038 3400 1.315257 GCCCCATCGATTTGTGCAGT 61.315 55.000 0.00 0.00 0.00 4.40
3309 3671 4.099573 GCTTGACAATGCTAGGAGGTAGTA 59.900 45.833 0.00 0.00 0.00 1.82
3310 3672 3.118592 GCTTGACAATGCTAGGAGGTAGT 60.119 47.826 0.00 0.00 0.00 2.73
3464 3826 2.936498 CCCTCAAGCTTACCATGTTACG 59.064 50.000 0.00 0.00 0.00 3.18
3469 3831 3.382546 CCATTTCCCTCAAGCTTACCATG 59.617 47.826 0.00 0.00 0.00 3.66
3488 3850 8.413229 CCGAGGAACATTACAAAATAATTCCAT 58.587 33.333 12.39 2.94 39.68 3.41
3694 4056 2.896044 CAGGCCTGACAGATGCTCTATA 59.104 50.000 29.88 0.00 0.00 1.31
3730 4092 2.095617 CGCATCATGCTGTGAAAACTCA 60.096 45.455 8.30 0.00 42.25 3.41
3768 4130 2.148687 GTCGTCTTGACTGCAGCAG 58.851 57.895 21.54 21.54 44.58 4.24
3769 4131 4.343581 GTCGTCTTGACTGCAGCA 57.656 55.556 15.27 10.30 44.58 4.41
3783 4145 0.534412 ATGGACCTTCTCAGCAGTCG 59.466 55.000 0.00 0.00 0.00 4.18
3802 4164 5.812127 CACGATGATCACTTGACAATTAGGA 59.188 40.000 0.00 0.00 0.00 2.94
3845 4207 5.473504 ACAATGCTCCAAAAGTCTATTCGTT 59.526 36.000 0.00 0.00 0.00 3.85
3855 4224 2.512485 TGTGCACAATGCTCCAAAAG 57.488 45.000 19.28 0.00 45.31 2.27
3883 4252 0.622136 ACATCCCTCATGCTTGCTCA 59.378 50.000 0.00 0.00 35.65 4.26
3903 4280 3.285484 TGTCTCCGGTAGAAGGTATGTC 58.715 50.000 0.00 0.00 35.47 3.06
3905 4282 3.288964 ACTGTCTCCGGTAGAAGGTATG 58.711 50.000 0.00 0.00 35.47 2.39
3915 4292 2.584391 GCCCTTGACTGTCTCCGGT 61.584 63.158 9.51 0.00 0.00 5.28
3916 4293 1.903877 ATGCCCTTGACTGTCTCCGG 61.904 60.000 9.51 0.00 0.00 5.14
3917 4294 0.036010 AATGCCCTTGACTGTCTCCG 60.036 55.000 9.51 0.00 0.00 4.63
3924 4301 3.379372 CGAATCATCAAATGCCCTTGACT 59.621 43.478 0.03 0.00 38.12 3.41
3929 4306 3.763360 TGAAACGAATCATCAAATGCCCT 59.237 39.130 0.00 0.00 0.00 5.19
3945 4323 5.632959 TGTTTAAGGAAGTGTGTTGAAACG 58.367 37.500 0.00 0.00 0.00 3.60
3946 4324 5.515270 GCTGTTTAAGGAAGTGTGTTGAAAC 59.485 40.000 0.00 0.00 0.00 2.78
3964 4342 4.451096 ACATTAATCACGAGAACGCTGTTT 59.549 37.500 0.00 0.00 43.96 2.83
3974 4352 7.401860 CACCAATTCACTACATTAATCACGAG 58.598 38.462 0.00 0.00 0.00 4.18
3976 4354 5.965334 GCACCAATTCACTACATTAATCACG 59.035 40.000 0.00 0.00 0.00 4.35
3977 4355 7.088589 AGCACCAATTCACTACATTAATCAC 57.911 36.000 0.00 0.00 0.00 3.06
3983 4361 6.594788 ATTCAAGCACCAATTCACTACATT 57.405 33.333 0.00 0.00 0.00 2.71
3984 4362 7.394359 ACTTATTCAAGCACCAATTCACTACAT 59.606 33.333 0.00 0.00 34.94 2.29
3986 4364 7.023575 CACTTATTCAAGCACCAATTCACTAC 58.976 38.462 0.00 0.00 34.94 2.73
3991 4369 5.517770 GCATCACTTATTCAAGCACCAATTC 59.482 40.000 0.00 0.00 34.94 2.17
3999 4377 2.659428 AGGGGCATCACTTATTCAAGC 58.341 47.619 0.00 0.00 34.94 4.01
4000 4378 5.296151 TCTAGGGGCATCACTTATTCAAG 57.704 43.478 0.00 0.00 37.81 3.02
4009 4387 1.070914 GCCTAGTTCTAGGGGCATCAC 59.929 57.143 22.47 5.25 43.59 3.06
4026 4404 7.639113 TTTAATTTGAGGAACGATAATGCCT 57.361 32.000 0.00 0.00 0.00 4.75
4034 4412 9.173021 ACATCATACATTTAATTTGAGGAACGA 57.827 29.630 0.00 0.00 0.00 3.85
4035 4413 9.787532 AACATCATACATTTAATTTGAGGAACG 57.212 29.630 0.00 0.00 0.00 3.95
4067 4445 4.398988 TGGCATAGAAGCAAGTAACAATGG 59.601 41.667 0.00 0.00 35.83 3.16
4090 4468 2.091333 ACACCCTCCCATCAAAACACTT 60.091 45.455 0.00 0.00 0.00 3.16
4091 4469 1.499007 ACACCCTCCCATCAAAACACT 59.501 47.619 0.00 0.00 0.00 3.55
4092 4470 1.995376 ACACCCTCCCATCAAAACAC 58.005 50.000 0.00 0.00 0.00 3.32
4093 4471 3.591527 AGATACACCCTCCCATCAAAACA 59.408 43.478 0.00 0.00 0.00 2.83
4094 4472 4.236527 AGATACACCCTCCCATCAAAAC 57.763 45.455 0.00 0.00 0.00 2.43
4095 4473 4.946160 AAGATACACCCTCCCATCAAAA 57.054 40.909 0.00 0.00 0.00 2.44
4096 4474 4.785914 TGTAAGATACACCCTCCCATCAAA 59.214 41.667 0.00 0.00 32.89 2.69
4097 4475 4.367166 TGTAAGATACACCCTCCCATCAA 58.633 43.478 0.00 0.00 32.89 2.57
4098 4476 3.967326 CTGTAAGATACACCCTCCCATCA 59.033 47.826 0.00 0.00 34.07 3.07
4099 4477 4.223953 TCTGTAAGATACACCCTCCCATC 58.776 47.826 0.00 0.00 38.67 3.51
4100 4478 4.280789 TCTGTAAGATACACCCTCCCAT 57.719 45.455 0.00 0.00 38.67 4.00
4101 4479 3.769189 TCTGTAAGATACACCCTCCCA 57.231 47.619 0.00 0.00 38.67 4.37
4102 4480 4.470304 AGTTTCTGTAAGATACACCCTCCC 59.530 45.833 1.61 0.00 46.36 4.30
4103 4481 5.678955 AGTTTCTGTAAGATACACCCTCC 57.321 43.478 1.61 0.00 46.36 4.30
4104 4482 9.099454 CATAAAGTTTCTGTAAGATACACCCTC 57.901 37.037 0.00 0.00 46.36 4.30
4105 4483 8.603304 ACATAAAGTTTCTGTAAGATACACCCT 58.397 33.333 4.92 0.00 46.36 4.34
4106 4484 8.788325 ACATAAAGTTTCTGTAAGATACACCC 57.212 34.615 4.92 0.00 46.36 4.61
4108 4486 9.543018 GCAACATAAAGTTTCTGTAAGATACAC 57.457 33.333 7.02 0.00 46.36 2.90
4109 4487 9.502091 AGCAACATAAAGTTTCTGTAAGATACA 57.498 29.630 7.02 0.00 46.36 2.29
4112 4490 9.899226 GAAAGCAACATAAAGTTTCTGTAAGAT 57.101 29.630 7.02 0.48 46.36 2.40
4113 4491 8.898761 TGAAAGCAACATAAAGTTTCTGTAAGA 58.101 29.630 7.02 0.00 44.68 2.10
4114 4492 9.173939 CTGAAAGCAACATAAAGTTTCTGTAAG 57.826 33.333 7.02 5.03 38.74 2.34
4115 4493 8.682710 ACTGAAAGCAACATAAAGTTTCTGTAA 58.317 29.630 7.02 0.00 37.46 2.41
4116 4494 8.220755 ACTGAAAGCAACATAAAGTTTCTGTA 57.779 30.769 7.02 0.00 37.46 2.74
4117 4495 7.100458 ACTGAAAGCAACATAAAGTTTCTGT 57.900 32.000 1.01 1.01 34.79 3.41
4118 4496 7.992180 AACTGAAAGCAACATAAAGTTTCTG 57.008 32.000 0.00 0.00 34.79 3.02
4119 4497 8.250332 TGAAACTGAAAGCAACATAAAGTTTCT 58.750 29.630 19.98 0.00 46.14 2.52
4120 4498 8.406172 TGAAACTGAAAGCAACATAAAGTTTC 57.594 30.769 15.10 15.10 46.15 2.78
4121 4499 8.034804 ACTGAAACTGAAAGCAACATAAAGTTT 58.965 29.630 0.00 0.00 34.79 2.66
4122 4500 7.547227 ACTGAAACTGAAAGCAACATAAAGTT 58.453 30.769 0.00 0.00 38.17 2.66
4123 4501 7.067494 AGACTGAAACTGAAAGCAACATAAAGT 59.933 33.333 0.00 0.00 37.60 2.66
4124 4502 7.377928 CAGACTGAAACTGAAAGCAACATAAAG 59.622 37.037 0.00 0.00 37.60 1.85
4125 4503 7.066887 TCAGACTGAAACTGAAAGCAACATAAA 59.933 33.333 1.64 0.00 40.70 1.40
4126 4504 6.542005 TCAGACTGAAACTGAAAGCAACATAA 59.458 34.615 1.64 0.00 40.70 1.90
4127 4505 6.054941 TCAGACTGAAACTGAAAGCAACATA 58.945 36.000 1.64 0.00 40.70 2.29
4128 4506 4.883585 TCAGACTGAAACTGAAAGCAACAT 59.116 37.500 1.64 0.00 40.70 2.71
4129 4507 4.260985 TCAGACTGAAACTGAAAGCAACA 58.739 39.130 1.64 0.00 40.70 3.33
4130 4508 4.882671 TCAGACTGAAACTGAAAGCAAC 57.117 40.909 1.64 0.00 40.70 4.17
4138 4516 8.865001 GCTAGTATAGTTTTCAGACTGAAACTG 58.135 37.037 26.51 15.75 41.50 3.16
4139 4517 8.585881 TGCTAGTATAGTTTTCAGACTGAAACT 58.414 33.333 26.51 24.96 41.50 2.66
4140 4518 8.758633 TGCTAGTATAGTTTTCAGACTGAAAC 57.241 34.615 26.51 20.66 41.50 2.78
4141 4519 9.772973 TTTGCTAGTATAGTTTTCAGACTGAAA 57.227 29.630 23.67 23.67 41.40 2.69
4142 4520 9.944376 ATTTGCTAGTATAGTTTTCAGACTGAA 57.056 29.630 13.99 13.99 41.93 3.02
4143 4521 9.371136 CATTTGCTAGTATAGTTTTCAGACTGA 57.629 33.333 0.00 0.00 41.93 3.41
4144 4522 9.371136 TCATTTGCTAGTATAGTTTTCAGACTG 57.629 33.333 0.00 0.00 41.93 3.51
4145 4523 9.372369 GTCATTTGCTAGTATAGTTTTCAGACT 57.628 33.333 0.00 0.00 41.93 3.24
4146 4524 8.604890 GGTCATTTGCTAGTATAGTTTTCAGAC 58.395 37.037 0.00 0.00 41.93 3.51
4147 4525 7.769044 GGGTCATTTGCTAGTATAGTTTTCAGA 59.231 37.037 0.00 0.00 41.93 3.27
4148 4526 7.770897 AGGGTCATTTGCTAGTATAGTTTTCAG 59.229 37.037 0.00 0.00 41.93 3.02
4149 4527 7.552687 CAGGGTCATTTGCTAGTATAGTTTTCA 59.447 37.037 0.00 0.00 41.93 2.69
4150 4528 7.467403 GCAGGGTCATTTGCTAGTATAGTTTTC 60.467 40.741 0.00 0.00 41.93 2.29
4151 4529 6.318900 GCAGGGTCATTTGCTAGTATAGTTTT 59.681 38.462 0.00 0.00 41.93 2.43
4152 4530 5.823045 GCAGGGTCATTTGCTAGTATAGTTT 59.177 40.000 0.00 0.00 41.93 2.66
4153 4531 5.104527 TGCAGGGTCATTTGCTAGTATAGTT 60.105 40.000 0.00 0.00 41.93 2.24
4154 4532 4.408921 TGCAGGGTCATTTGCTAGTATAGT 59.591 41.667 0.00 0.00 41.93 2.12
4155 4533 4.752101 GTGCAGGGTCATTTGCTAGTATAG 59.248 45.833 0.00 0.00 43.09 1.31
4156 4534 4.703897 GTGCAGGGTCATTTGCTAGTATA 58.296 43.478 0.00 0.00 40.87 1.47
4157 4535 3.545703 GTGCAGGGTCATTTGCTAGTAT 58.454 45.455 0.00 0.00 40.87 2.12
4158 4536 2.676750 CGTGCAGGGTCATTTGCTAGTA 60.677 50.000 0.00 0.00 40.87 1.82
4159 4537 1.826385 GTGCAGGGTCATTTGCTAGT 58.174 50.000 0.00 0.00 40.87 2.57
4160 4538 0.729116 CGTGCAGGGTCATTTGCTAG 59.271 55.000 0.00 0.00 40.87 3.42
4161 4539 0.676466 CCGTGCAGGGTCATTTGCTA 60.676 55.000 17.47 0.00 40.87 3.49
4162 4540 1.973281 CCGTGCAGGGTCATTTGCT 60.973 57.895 17.47 0.00 40.87 3.91
4163 4541 1.926511 CTCCGTGCAGGGTCATTTGC 61.927 60.000 24.03 0.00 41.52 3.68
4164 4542 0.606401 ACTCCGTGCAGGGTCATTTG 60.606 55.000 24.03 11.20 41.52 2.32
4165 4543 0.110486 AACTCCGTGCAGGGTCATTT 59.890 50.000 24.03 10.69 41.52 2.32
4166 4544 0.321653 GAACTCCGTGCAGGGTCATT 60.322 55.000 24.03 16.24 41.52 2.57
4167 4545 1.296715 GAACTCCGTGCAGGGTCAT 59.703 57.895 24.03 11.64 41.52 3.06
4168 4546 2.741092 GAACTCCGTGCAGGGTCA 59.259 61.111 24.03 6.00 41.52 4.02
4169 4547 2.432628 CGAACTCCGTGCAGGGTC 60.433 66.667 24.03 13.90 41.52 4.46
4178 4556 2.649331 AGGTATTCACACGAACTCCG 57.351 50.000 0.00 0.00 45.44 4.63
4179 4557 7.208080 ACATATAAGGTATTCACACGAACTCC 58.792 38.462 0.00 0.00 32.81 3.85
4180 4558 9.740239 TTACATATAAGGTATTCACACGAACTC 57.260 33.333 0.00 0.00 32.81 3.01
4181 4559 9.745880 CTTACATATAAGGTATTCACACGAACT 57.254 33.333 0.00 0.00 35.12 3.01
4182 4560 9.525409 ACTTACATATAAGGTATTCACACGAAC 57.475 33.333 0.00 0.00 41.98 3.95
4183 4561 9.740239 GACTTACATATAAGGTATTCACACGAA 57.260 33.333 0.00 0.00 41.98 3.85
4184 4562 8.071967 CGACTTACATATAAGGTATTCACACGA 58.928 37.037 0.00 0.00 41.98 4.35
4185 4563 7.149015 GCGACTTACATATAAGGTATTCACACG 60.149 40.741 0.00 0.00 41.98 4.49
4186 4564 7.115947 GGCGACTTACATATAAGGTATTCACAC 59.884 40.741 0.00 0.00 41.98 3.82
4187 4565 7.014905 AGGCGACTTACATATAAGGTATTCACA 59.985 37.037 0.00 0.00 41.98 3.58
4188 4566 7.328737 CAGGCGACTTACATATAAGGTATTCAC 59.671 40.741 0.00 0.00 41.98 3.18
4189 4567 7.231925 TCAGGCGACTTACATATAAGGTATTCA 59.768 37.037 0.00 0.00 41.98 2.57
4190 4568 7.600065 TCAGGCGACTTACATATAAGGTATTC 58.400 38.462 0.00 0.00 41.98 1.75
4191 4569 7.534723 TCAGGCGACTTACATATAAGGTATT 57.465 36.000 0.00 0.00 41.98 1.89
4192 4570 7.534723 TTCAGGCGACTTACATATAAGGTAT 57.465 36.000 0.00 0.00 41.98 2.73
4193 4571 6.964807 TTCAGGCGACTTACATATAAGGTA 57.035 37.500 0.00 0.00 41.98 3.08
4194 4572 5.864418 TTCAGGCGACTTACATATAAGGT 57.136 39.130 0.00 0.00 41.98 3.50
4195 4573 6.692486 AGATTCAGGCGACTTACATATAAGG 58.308 40.000 0.00 0.00 41.98 2.69
4196 4574 7.867909 TCAAGATTCAGGCGACTTACATATAAG 59.132 37.037 0.00 0.00 43.14 1.73
4197 4575 7.722363 TCAAGATTCAGGCGACTTACATATAA 58.278 34.615 0.00 0.00 40.21 0.98
4243 4622 2.300152 TCAGAGCAAGAATCAACGGTCT 59.700 45.455 0.00 0.00 36.70 3.85
4248 4627 6.084925 CACAAATCTCAGAGCAAGAATCAAC 58.915 40.000 0.00 0.00 0.00 3.18
4287 4666 3.244700 ACCATCTCATATAACAGCCCAGC 60.245 47.826 0.00 0.00 0.00 4.85
4368 4750 2.038033 GGCGTGATAGGTAATGGGCTTA 59.962 50.000 0.00 0.00 0.00 3.09
4483 4891 7.561356 CCCAACATCCCAAAGATACTTAGAAAT 59.439 37.037 0.00 0.00 32.37 2.17
4487 4895 5.590259 CACCCAACATCCCAAAGATACTTAG 59.410 44.000 0.00 0.00 32.37 2.18
4490 4898 3.591527 TCACCCAACATCCCAAAGATACT 59.408 43.478 0.00 0.00 32.37 2.12
4495 4903 1.888512 CACTCACCCAACATCCCAAAG 59.111 52.381 0.00 0.00 0.00 2.77
4598 5008 7.081526 TGCACACAACATTGCTTTAAAATTT 57.918 28.000 0.00 0.00 39.62 1.82
4606 5016 3.533547 ACAATTGCACACAACATTGCTT 58.466 36.364 5.05 0.00 38.99 3.91
4607 5017 3.182341 ACAATTGCACACAACATTGCT 57.818 38.095 5.05 0.00 38.99 3.91
4612 5022 6.393990 AGAAAGTTAACAATTGCACACAACA 58.606 32.000 8.61 0.00 38.99 3.33
4669 5088 7.716799 ATAAGGAACAATGAATTAGTGCCAA 57.283 32.000 0.00 0.00 33.10 4.52
4746 5171 5.952347 AGTGGAAATGTACTACCCTTAGG 57.048 43.478 0.00 0.00 40.04 2.69
4747 5172 8.075761 AGTTAGTGGAAATGTACTACCCTTAG 57.924 38.462 0.00 0.00 0.00 2.18
4756 5181 7.923414 AAGGAATGAGTTAGTGGAAATGTAC 57.077 36.000 0.00 0.00 0.00 2.90
4760 5185 9.025041 CCTAAAAAGGAATGAGTTAGTGGAAAT 57.975 33.333 0.00 0.00 0.00 2.17
4761 5186 8.221944 TCCTAAAAAGGAATGAGTTAGTGGAAA 58.778 33.333 0.00 0.00 34.56 3.13
4763 5189 7.324388 TCCTAAAAAGGAATGAGTTAGTGGA 57.676 36.000 0.00 0.00 34.56 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.