Multiple sequence alignment - TraesCS7D01G479700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G479700 chr7D 100.000 2744 0 0 1 2744 590731137 590733880 0.000000e+00 5068.0
1 TraesCS7D01G479700 chr7D 84.067 1795 160 57 665 2386 590647403 590649144 0.000000e+00 1615.0
2 TraesCS7D01G479700 chr7D 84.593 1402 160 39 734 2094 590651931 590653317 0.000000e+00 1341.0
3 TraesCS7D01G479700 chr7D 92.139 547 35 5 1 545 479176308 479175768 0.000000e+00 765.0
4 TraesCS7D01G479700 chr7D 82.545 888 131 15 769 1648 84406597 84407468 0.000000e+00 760.0
5 TraesCS7D01G479700 chr7D 90.642 545 46 3 1 543 617484989 617484448 0.000000e+00 719.0
6 TraesCS7D01G479700 chr7D 89.189 370 29 6 2380 2744 590649171 590649534 4.170000e-123 451.0
7 TraesCS7D01G479700 chr7D 86.364 88 11 1 2658 2744 590649545 590649632 8.090000e-16 95.3
8 TraesCS7D01G479700 chr7B 88.252 1762 133 42 683 2389 23318269 23316527 0.000000e+00 2039.0
9 TraesCS7D01G479700 chr7B 85.378 1744 165 44 688 2386 665522800 665524498 0.000000e+00 1725.0
10 TraesCS7D01G479700 chr7B 86.527 1002 89 21 806 1789 665534597 665535570 0.000000e+00 1061.0
11 TraesCS7D01G479700 chr7B 88.255 894 82 14 1213 2096 665539195 665540075 0.000000e+00 1048.0
12 TraesCS7D01G479700 chr7B 83.499 1109 109 37 1321 2381 665531654 665532736 0.000000e+00 966.0
13 TraesCS7D01G479700 chr7B 82.557 1095 131 28 688 1748 34048361 34049429 0.000000e+00 909.0
14 TraesCS7D01G479700 chr7B 78.375 1452 222 51 688 2096 23325913 23324511 0.000000e+00 857.0
15 TraesCS7D01G479700 chr7B 85.550 609 47 17 734 1325 665525593 665526177 1.410000e-167 599.0
16 TraesCS7D01G479700 chr7B 87.709 358 30 9 2380 2734 23316503 23316157 3.290000e-109 405.0
17 TraesCS7D01G479700 chr7B 83.200 375 47 10 2380 2744 665524525 665524893 2.040000e-86 329.0
18 TraesCS7D01G479700 chr7B 88.785 214 18 5 2384 2591 665532771 665532984 9.750000e-65 257.0
19 TraesCS7D01G479700 chr7B 93.252 163 11 0 2582 2744 665533251 665533413 9.820000e-60 241.0
20 TraesCS7D01G479700 chr3A 92.505 547 36 3 1 545 631350767 631351310 0.000000e+00 778.0
21 TraesCS7D01G479700 chr2D 91.560 545 41 3 1 543 564333848 564334389 0.000000e+00 747.0
22 TraesCS7D01G479700 chr2D 91.058 548 42 5 1 545 378966448 378966991 0.000000e+00 734.0
23 TraesCS7D01G479700 chr4D 91.225 547 42 4 1 545 306458012 306457470 0.000000e+00 739.0
24 TraesCS7D01G479700 chr5D 91.042 547 44 3 1 545 38856746 38856203 0.000000e+00 734.0
25 TraesCS7D01G479700 chr5D 91.042 547 44 4 1 545 219505902 219505359 0.000000e+00 734.0
26 TraesCS7D01G479700 chr3D 90.511 548 44 6 1 545 584389139 584389681 0.000000e+00 717.0
27 TraesCS7D01G479700 chr5B 88.532 218 18 6 2384 2595 93470621 93470405 9.750000e-65 257.0
28 TraesCS7D01G479700 chr5B 90.625 160 13 2 2585 2744 93469984 93469827 7.700000e-51 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G479700 chr7D 590731137 590733880 2743 False 5068.000000 5068 100.000000 1 2744 1 chr7D.!!$F2 2743
1 TraesCS7D01G479700 chr7D 590647403 590653317 5914 False 875.575000 1615 86.053250 665 2744 4 chr7D.!!$F3 2079
2 TraesCS7D01G479700 chr7D 479175768 479176308 540 True 765.000000 765 92.139000 1 545 1 chr7D.!!$R1 544
3 TraesCS7D01G479700 chr7D 84406597 84407468 871 False 760.000000 760 82.545000 769 1648 1 chr7D.!!$F1 879
4 TraesCS7D01G479700 chr7D 617484448 617484989 541 True 719.000000 719 90.642000 1 543 1 chr7D.!!$R2 542
5 TraesCS7D01G479700 chr7B 23316157 23318269 2112 True 1222.000000 2039 87.980500 683 2734 2 chr7B.!!$R2 2051
6 TraesCS7D01G479700 chr7B 34048361 34049429 1068 False 909.000000 909 82.557000 688 1748 1 chr7B.!!$F1 1060
7 TraesCS7D01G479700 chr7B 665522800 665526177 3377 False 884.333333 1725 84.709333 688 2744 3 chr7B.!!$F2 2056
8 TraesCS7D01G479700 chr7B 23324511 23325913 1402 True 857.000000 857 78.375000 688 2096 1 chr7B.!!$R1 1408
9 TraesCS7D01G479700 chr7B 665531654 665540075 8421 False 714.600000 1061 88.063600 806 2744 5 chr7B.!!$F3 1938
10 TraesCS7D01G479700 chr3A 631350767 631351310 543 False 778.000000 778 92.505000 1 545 1 chr3A.!!$F1 544
11 TraesCS7D01G479700 chr2D 564333848 564334389 541 False 747.000000 747 91.560000 1 543 1 chr2D.!!$F2 542
12 TraesCS7D01G479700 chr2D 378966448 378966991 543 False 734.000000 734 91.058000 1 545 1 chr2D.!!$F1 544
13 TraesCS7D01G479700 chr4D 306457470 306458012 542 True 739.000000 739 91.225000 1 545 1 chr4D.!!$R1 544
14 TraesCS7D01G479700 chr5D 38856203 38856746 543 True 734.000000 734 91.042000 1 545 1 chr5D.!!$R1 544
15 TraesCS7D01G479700 chr5D 219505359 219505902 543 True 734.000000 734 91.042000 1 545 1 chr5D.!!$R2 544
16 TraesCS7D01G479700 chr3D 584389139 584389681 542 False 717.000000 717 90.511000 1 545 1 chr3D.!!$F1 544
17 TraesCS7D01G479700 chr5B 93469827 93470621 794 True 234.000000 257 89.578500 2384 2744 2 chr5B.!!$R1 360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 575 0.034960 GAGTGGAGAGAAAAGGCCCC 60.035 60.0 0.00 0.0 0.0 5.80 F
636 639 0.182061 GATCTTCTCCTGGCCATGCA 59.818 55.0 5.51 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 3846 0.687354 TTGAGAAGCTCCTGGGTGTC 59.313 55.0 0.00 0.0 0.0 3.67 R
2616 9624 0.536233 CACACCATGGACCAACGGAA 60.536 55.0 21.47 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 0.104090 ACCTTCCCTAACCACCACCT 60.104 55.000 0.00 0.00 0.00 4.00
58 60 2.207924 ACCACCTCCAGTGTCGTCC 61.208 63.158 0.00 0.00 45.74 4.79
60 62 2.114625 ACCTCCAGTGTCGTCCGA 59.885 61.111 0.00 0.00 0.00 4.55
93 95 1.826487 GCCCTCGGGTTGTTGTTGT 60.826 57.895 3.54 0.00 37.65 3.32
293 295 8.598041 GGTATTGATATACTTGAGAGGGTCATT 58.402 37.037 0.00 0.00 37.39 2.57
322 324 2.506644 TCCTCCATGACATCATCAGCAA 59.493 45.455 0.00 0.00 41.91 3.91
326 328 4.528920 TCCATGACATCATCAGCAATTGA 58.471 39.130 10.34 0.00 41.91 2.57
351 354 3.823330 ACGGGGCGACGTCATCTC 61.823 66.667 17.16 6.24 45.08 2.75
358 361 3.135306 CGACGTCATCTCGCACTAG 57.865 57.895 17.16 0.00 0.00 2.57
361 364 1.397343 GACGTCATCTCGCACTAGTGA 59.603 52.381 27.08 5.70 0.00 3.41
458 461 2.447244 CTTCTTGAGGAGCTGTCGTT 57.553 50.000 0.00 0.00 0.00 3.85
459 462 2.064762 CTTCTTGAGGAGCTGTCGTTG 58.935 52.381 0.00 0.00 0.00 4.10
460 463 0.318441 TCTTGAGGAGCTGTCGTTGG 59.682 55.000 0.00 0.00 0.00 3.77
462 465 0.249868 TTGAGGAGCTGTCGTTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
464 467 0.946221 GAGGAGCTGTCGTTGGTGTG 60.946 60.000 0.00 0.00 0.00 3.82
465 468 2.607892 GGAGCTGTCGTTGGTGTGC 61.608 63.158 0.00 0.00 0.00 4.57
466 469 1.595382 GAGCTGTCGTTGGTGTGCT 60.595 57.895 0.00 0.00 0.00 4.40
468 471 0.600255 AGCTGTCGTTGGTGTGCTAC 60.600 55.000 0.00 0.00 0.00 3.58
489 492 1.006571 GGCACCTCGACACGAAGAA 60.007 57.895 0.00 0.00 34.74 2.52
490 493 1.009389 GGCACCTCGACACGAAGAAG 61.009 60.000 0.00 0.00 34.74 2.85
492 495 1.970447 CACCTCGACACGAAGAAGAG 58.030 55.000 0.00 0.00 34.74 2.85
494 497 1.536331 ACCTCGACACGAAGAAGAGTC 59.464 52.381 0.00 0.00 34.74 3.36
498 501 4.083431 CCTCGACACGAAGAAGAGTCTTTA 60.083 45.833 6.88 0.00 44.42 1.85
500 503 3.604627 CGACACGAAGAAGAGTCTTTAGC 59.395 47.826 6.88 0.00 44.42 3.09
501 504 3.566523 ACACGAAGAAGAGTCTTTAGCG 58.433 45.455 6.88 12.63 44.42 4.26
502 505 3.252701 ACACGAAGAAGAGTCTTTAGCGA 59.747 43.478 21.21 0.00 44.42 4.93
505 508 3.854809 CGAAGAAGAGTCTTTAGCGAAGG 59.145 47.826 6.88 0.00 44.42 3.46
506 509 3.239587 AGAAGAGTCTTTAGCGAAGGC 57.760 47.619 6.88 0.00 40.36 4.35
507 510 2.563179 AGAAGAGTCTTTAGCGAAGGCA 59.437 45.455 6.88 0.00 42.56 4.75
509 512 2.966050 AGAGTCTTTAGCGAAGGCAAG 58.034 47.619 9.59 0.00 42.56 4.01
510 513 2.563179 AGAGTCTTTAGCGAAGGCAAGA 59.437 45.455 9.59 0.00 42.56 3.02
511 514 3.006967 AGAGTCTTTAGCGAAGGCAAGAA 59.993 43.478 9.59 0.00 42.56 2.52
512 515 3.067833 AGTCTTTAGCGAAGGCAAGAAC 58.932 45.455 9.59 0.00 42.56 3.01
513 516 2.159824 GTCTTTAGCGAAGGCAAGAACC 59.840 50.000 3.09 0.00 39.81 3.62
514 517 2.151202 CTTTAGCGAAGGCAAGAACCA 58.849 47.619 0.00 0.00 43.41 3.67
515 518 1.808411 TTAGCGAAGGCAAGAACCAG 58.192 50.000 0.00 0.00 43.41 4.00
521 524 3.369921 GGCAAGAACCAGCCCTTG 58.630 61.111 0.00 0.00 45.18 3.61
523 526 4.179361 CAAGAACCAGCCCTTGCA 57.821 55.556 0.00 0.00 41.13 4.08
525 528 0.245539 CAAGAACCAGCCCTTGCATG 59.754 55.000 0.00 0.00 41.13 4.06
526 529 0.178953 AAGAACCAGCCCTTGCATGT 60.179 50.000 0.00 0.00 41.13 3.21
527 530 0.896940 AGAACCAGCCCTTGCATGTG 60.897 55.000 0.00 0.00 41.13 3.21
528 531 2.496828 GAACCAGCCCTTGCATGTGC 62.497 60.000 0.00 0.00 41.13 4.57
529 532 3.766691 CCAGCCCTTGCATGTGCC 61.767 66.667 3.44 0.00 41.13 5.01
530 533 2.992689 CAGCCCTTGCATGTGCCA 60.993 61.111 3.44 0.00 41.13 4.92
531 534 2.203669 AGCCCTTGCATGTGCCAA 60.204 55.556 3.44 0.00 41.13 4.52
532 535 1.611261 AGCCCTTGCATGTGCCAAT 60.611 52.632 3.44 0.00 41.13 3.16
533 536 1.153509 GCCCTTGCATGTGCCAATC 60.154 57.895 2.07 0.00 41.18 2.67
534 537 1.518774 CCCTTGCATGTGCCAATCC 59.481 57.895 2.07 0.00 41.18 3.01
535 538 1.140161 CCTTGCATGTGCCAATCCG 59.860 57.895 2.07 0.00 41.18 4.18
536 539 1.597797 CCTTGCATGTGCCAATCCGT 61.598 55.000 2.07 0.00 41.18 4.69
538 541 0.678395 TTGCATGTGCCAATCCGTTT 59.322 45.000 2.07 0.00 41.18 3.60
540 543 1.472082 TGCATGTGCCAATCCGTTTAG 59.528 47.619 2.07 0.00 41.18 1.85
541 544 1.202290 GCATGTGCCAATCCGTTTAGG 60.202 52.381 0.00 0.00 36.77 2.69
543 546 0.322997 TGTGCCAATCCGTTTAGGGG 60.323 55.000 0.00 0.00 41.52 4.79
544 547 0.323087 GTGCCAATCCGTTTAGGGGT 60.323 55.000 0.00 0.00 41.52 4.95
545 548 0.406361 TGCCAATCCGTTTAGGGGTT 59.594 50.000 0.00 0.00 41.52 4.11
546 549 1.100510 GCCAATCCGTTTAGGGGTTC 58.899 55.000 0.00 0.00 41.52 3.62
547 550 1.340697 GCCAATCCGTTTAGGGGTTCT 60.341 52.381 0.00 0.00 41.52 3.01
548 551 2.092807 GCCAATCCGTTTAGGGGTTCTA 60.093 50.000 0.00 0.00 41.52 2.10
549 552 3.434596 GCCAATCCGTTTAGGGGTTCTAT 60.435 47.826 0.00 0.00 41.52 1.98
551 554 4.820173 CCAATCCGTTTAGGGGTTCTATTC 59.180 45.833 0.00 0.00 41.52 1.75
552 555 5.433526 CAATCCGTTTAGGGGTTCTATTCA 58.566 41.667 0.00 0.00 41.52 2.57
557 560 5.109903 CGTTTAGGGGTTCTATTCAGAGTG 58.890 45.833 0.00 0.00 30.73 3.51
559 562 3.491766 AGGGGTTCTATTCAGAGTGGA 57.508 47.619 0.00 0.00 30.73 4.02
560 563 3.379452 AGGGGTTCTATTCAGAGTGGAG 58.621 50.000 0.00 0.00 30.73 3.86
561 564 3.012959 AGGGGTTCTATTCAGAGTGGAGA 59.987 47.826 0.00 0.00 30.73 3.71
562 565 3.386402 GGGGTTCTATTCAGAGTGGAGAG 59.614 52.174 0.00 0.00 30.73 3.20
563 566 4.282496 GGGTTCTATTCAGAGTGGAGAGA 58.718 47.826 0.00 0.00 30.73 3.10
565 568 5.187967 GGGTTCTATTCAGAGTGGAGAGAAA 59.812 44.000 0.00 0.00 30.73 2.52
566 569 6.295916 GGGTTCTATTCAGAGTGGAGAGAAAA 60.296 42.308 0.00 0.00 30.73 2.29
567 570 6.816140 GGTTCTATTCAGAGTGGAGAGAAAAG 59.184 42.308 0.00 0.00 30.73 2.27
568 571 6.537453 TCTATTCAGAGTGGAGAGAAAAGG 57.463 41.667 0.00 0.00 0.00 3.11
569 572 3.409026 TTCAGAGTGGAGAGAAAAGGC 57.591 47.619 0.00 0.00 0.00 4.35
570 573 1.625818 TCAGAGTGGAGAGAAAAGGCC 59.374 52.381 0.00 0.00 0.00 5.19
572 575 0.034960 GAGTGGAGAGAAAAGGCCCC 60.035 60.000 0.00 0.00 0.00 5.80
597 600 4.725556 TTTGTACATCGACTGCAAAGTC 57.274 40.909 0.00 0.00 35.59 3.01
598 601 3.660501 TGTACATCGACTGCAAAGTCT 57.339 42.857 4.76 0.00 36.71 3.24
600 603 3.740832 TGTACATCGACTGCAAAGTCTTG 59.259 43.478 4.76 4.95 36.71 3.02
601 604 2.146342 ACATCGACTGCAAAGTCTTGG 58.854 47.619 4.76 0.00 36.71 3.61
604 607 2.416747 TCGACTGCAAAGTCTTGGATG 58.583 47.619 4.76 0.00 36.71 3.51
605 608 2.037121 TCGACTGCAAAGTCTTGGATGA 59.963 45.455 4.76 0.00 36.71 2.92
607 610 3.120408 CGACTGCAAAGTCTTGGATGAAG 60.120 47.826 4.76 0.00 36.71 3.02
608 611 3.817647 GACTGCAAAGTCTTGGATGAAGT 59.182 43.478 0.00 0.00 34.34 3.01
609 612 3.567164 ACTGCAAAGTCTTGGATGAAGTG 59.433 43.478 0.00 0.00 30.43 3.16
610 613 3.817084 CTGCAAAGTCTTGGATGAAGTGA 59.183 43.478 0.00 0.00 31.82 3.41
611 614 3.565482 TGCAAAGTCTTGGATGAAGTGAC 59.435 43.478 0.00 0.00 32.76 3.67
612 615 3.565482 GCAAAGTCTTGGATGAAGTGACA 59.435 43.478 0.00 0.00 32.76 3.58
613 616 4.320057 GCAAAGTCTTGGATGAAGTGACAG 60.320 45.833 0.00 0.00 32.76 3.51
614 617 3.692257 AGTCTTGGATGAAGTGACAGG 57.308 47.619 0.00 0.00 32.90 4.00
615 618 2.079925 GTCTTGGATGAAGTGACAGGC 58.920 52.381 0.00 0.00 32.90 4.85
616 619 1.699083 TCTTGGATGAAGTGACAGGCA 59.301 47.619 0.00 0.00 32.90 4.75
617 620 2.082231 CTTGGATGAAGTGACAGGCAG 58.918 52.381 0.00 0.00 0.00 4.85
620 623 2.093288 TGGATGAAGTGACAGGCAGATC 60.093 50.000 0.00 0.00 0.00 2.75
621 624 2.170187 GGATGAAGTGACAGGCAGATCT 59.830 50.000 0.00 0.00 0.00 2.75
622 625 3.370315 GGATGAAGTGACAGGCAGATCTT 60.370 47.826 0.00 0.00 0.00 2.40
623 626 3.325293 TGAAGTGACAGGCAGATCTTC 57.675 47.619 0.00 0.00 34.02 2.87
626 629 1.830477 AGTGACAGGCAGATCTTCTCC 59.170 52.381 0.00 0.00 0.00 3.71
628 631 1.829849 TGACAGGCAGATCTTCTCCTG 59.170 52.381 23.77 23.77 42.39 3.86
629 632 1.138661 GACAGGCAGATCTTCTCCTGG 59.861 57.143 26.66 15.62 41.70 4.45
630 633 4.874528 GGCAGATCTTCTCCTGGC 57.125 61.111 0.00 0.00 46.15 4.85
631 634 1.148048 GGCAGATCTTCTCCTGGCC 59.852 63.158 0.00 0.00 46.37 5.36
632 635 1.630126 GGCAGATCTTCTCCTGGCCA 61.630 60.000 4.71 4.71 46.37 5.36
635 638 0.473326 AGATCTTCTCCTGGCCATGC 59.527 55.000 5.51 0.00 0.00 4.06
636 639 0.182061 GATCTTCTCCTGGCCATGCA 59.818 55.000 5.51 0.00 0.00 3.96
637 640 0.851469 ATCTTCTCCTGGCCATGCAT 59.149 50.000 5.51 0.00 0.00 3.96
639 642 1.141657 TCTTCTCCTGGCCATGCATAC 59.858 52.381 5.51 0.00 0.00 2.39
641 644 0.918258 TCTCCTGGCCATGCATACAA 59.082 50.000 5.51 0.00 0.00 2.41
642 645 1.027357 CTCCTGGCCATGCATACAAC 58.973 55.000 5.51 0.00 0.00 3.32
643 646 0.625316 TCCTGGCCATGCATACAACT 59.375 50.000 5.51 0.00 0.00 3.16
644 647 0.742505 CCTGGCCATGCATACAACTG 59.257 55.000 5.51 0.00 0.00 3.16
645 648 0.742505 CTGGCCATGCATACAACTGG 59.257 55.000 5.51 0.00 0.00 4.00
652 655 5.808042 CCATGCATACAACTGGCTATATC 57.192 43.478 0.00 0.00 0.00 1.63
653 656 5.247862 CCATGCATACAACTGGCTATATCA 58.752 41.667 0.00 0.00 0.00 2.15
655 658 7.049754 CCATGCATACAACTGGCTATATCATA 58.950 38.462 0.00 0.00 0.00 2.15
656 659 7.226128 CCATGCATACAACTGGCTATATCATAG 59.774 40.741 0.00 0.00 0.00 2.23
657 660 7.244886 TGCATACAACTGGCTATATCATAGT 57.755 36.000 0.00 0.00 0.00 2.12
658 661 8.361169 TGCATACAACTGGCTATATCATAGTA 57.639 34.615 0.00 0.00 0.00 1.82
660 663 9.469807 GCATACAACTGGCTATATCATAGTATC 57.530 37.037 0.00 0.00 0.00 2.24
681 684 1.671979 ATCAACCATGTGCCGATCTG 58.328 50.000 0.00 0.00 0.00 2.90
882 3028 5.049405 CACGCCTAGAAAAGTTGAAGTCAAT 60.049 40.000 0.00 0.00 38.24 2.57
883 3029 6.147164 CACGCCTAGAAAAGTTGAAGTCAATA 59.853 38.462 0.00 0.00 38.24 1.90
884 3030 6.879458 ACGCCTAGAAAAGTTGAAGTCAATAT 59.121 34.615 0.00 0.00 38.24 1.28
904 3063 4.760530 ATATGTGCAGCCTTCAACTAGA 57.239 40.909 0.00 0.00 0.00 2.43
1027 3249 6.210385 GGAACAGCTTAGGATATCTCTCATCA 59.790 42.308 2.05 0.00 0.00 3.07
1030 3252 6.552725 ACAGCTTAGGATATCTCTCATCAACA 59.447 38.462 2.05 0.00 0.00 3.33
1035 3257 5.595885 AGGATATCTCTCATCAACAACACG 58.404 41.667 2.05 0.00 0.00 4.49
1053 3275 1.519455 GATGGCGTCACCTTCTCCG 60.519 63.158 0.00 0.00 39.12 4.63
1062 3284 0.679505 CACCTTCTCCGTCTTCCACA 59.320 55.000 0.00 0.00 0.00 4.17
1380 3614 1.341531 CTCTTCACCTTCACCGACAGT 59.658 52.381 0.00 0.00 0.00 3.55
1466 3700 1.668751 CTTCTCGGACGAAGAGGAGAG 59.331 57.143 8.46 0.00 42.58 3.20
1469 3703 2.046864 CGGACGAAGAGGAGAGGCA 61.047 63.158 0.00 0.00 0.00 4.75
1612 3846 4.738998 TCCCCAACGCTGGCATGG 62.739 66.667 0.00 0.00 41.99 3.66
1657 3891 1.966762 CCTCTGGGCATTGCGTTTT 59.033 52.632 1.91 0.00 0.00 2.43
1758 3998 8.430801 AGCTCACTTGATGTTAATATCAGTTC 57.569 34.615 13.71 7.29 38.25 3.01
1873 8352 8.967218 GTTAAAATGTAGTGTAATCGCGGTATA 58.033 33.333 6.13 0.00 0.00 1.47
1874 8353 7.633361 AAAATGTAGTGTAATCGCGGTATAG 57.367 36.000 6.13 0.00 0.00 1.31
1875 8354 4.754372 TGTAGTGTAATCGCGGTATAGG 57.246 45.455 6.13 0.00 0.00 2.57
1876 8355 4.388485 TGTAGTGTAATCGCGGTATAGGA 58.612 43.478 6.13 0.00 0.00 2.94
1877 8356 4.453478 TGTAGTGTAATCGCGGTATAGGAG 59.547 45.833 6.13 0.00 0.00 3.69
1878 8357 2.818432 AGTGTAATCGCGGTATAGGAGG 59.182 50.000 6.13 0.00 0.00 4.30
1879 8358 2.816087 GTGTAATCGCGGTATAGGAGGA 59.184 50.000 6.13 0.00 0.00 3.71
1880 8359 3.079578 TGTAATCGCGGTATAGGAGGAG 58.920 50.000 6.13 0.00 0.00 3.69
1881 8360 2.581216 AATCGCGGTATAGGAGGAGA 57.419 50.000 6.13 0.00 0.00 3.71
1882 8361 2.810870 ATCGCGGTATAGGAGGAGAT 57.189 50.000 6.13 0.00 0.00 2.75
1883 8362 2.110901 TCGCGGTATAGGAGGAGATC 57.889 55.000 6.13 0.00 0.00 2.75
1884 8363 1.629353 TCGCGGTATAGGAGGAGATCT 59.371 52.381 6.13 0.00 0.00 2.75
1885 8364 1.740585 CGCGGTATAGGAGGAGATCTG 59.259 57.143 0.00 0.00 0.00 2.90
1886 8365 2.096248 GCGGTATAGGAGGAGATCTGG 58.904 57.143 0.00 0.00 0.00 3.86
1887 8366 2.555670 GCGGTATAGGAGGAGATCTGGT 60.556 54.545 0.00 0.00 0.00 4.00
1894 8373 4.668138 AGGAGGAGATCTGGTATAGGAC 57.332 50.000 0.00 0.00 0.00 3.85
2002 8486 2.669569 GCCCTTGTTCGCTGCAGA 60.670 61.111 20.43 0.00 0.00 4.26
2006 8490 0.877071 CCTTGTTCGCTGCAGATGTT 59.123 50.000 20.43 0.00 0.00 2.71
2019 8503 6.630443 CGCTGCAGATGTTATGTTTATCTTTC 59.370 38.462 20.43 0.00 0.00 2.62
2132 8651 4.891992 TTATTCCAAATTTGCGGGGAAA 57.108 36.364 12.92 0.00 42.26 3.13
2159 8678 3.382546 GTGCTCTGCCCATTTCAACATAT 59.617 43.478 0.00 0.00 0.00 1.78
2248 8771 7.542025 AGGAAATTGTGAACTTCATATTCAGC 58.458 34.615 0.00 0.00 36.76 4.26
2261 8791 5.724328 TCATATTCAGCGTGAGAGTCTTTT 58.276 37.500 0.00 0.00 0.00 2.27
2267 8797 3.496130 CAGCGTGAGAGTCTTTTGTCAAT 59.504 43.478 0.00 0.00 0.00 2.57
2293 8824 4.961438 TCCTTACAAGGGAAACTACGTT 57.039 40.909 8.14 0.00 46.47 3.99
2329 8862 5.049405 AGTGTGGTTTCATTGAAGATTCGTC 60.049 40.000 0.00 0.00 0.00 4.20
2497 9069 3.752704 GGGTTTGCAACGCTGGTA 58.247 55.556 0.00 0.00 40.78 3.25
2533 9105 6.017192 CCACAAATTATGCCATCGAAGTCATA 60.017 38.462 0.00 0.00 0.00 2.15
2567 9139 1.339631 TGTTTGGCACTCCGAATAGGG 60.340 52.381 0.00 0.00 38.02 3.53
2569 9141 0.988832 TTGGCACTCCGAATAGGGTT 59.011 50.000 0.00 0.00 41.52 4.11
2578 9150 4.224370 ACTCCGAATAGGGTTTCAAGCTTA 59.776 41.667 0.00 0.00 41.52 3.09
2580 9152 4.939439 TCCGAATAGGGTTTCAAGCTTAAC 59.061 41.667 0.00 0.36 41.52 2.01
2586 9158 4.964593 AGGGTTTCAAGCTTAACGAAGTA 58.035 39.130 0.00 0.00 45.00 2.24
2587 9159 4.753610 AGGGTTTCAAGCTTAACGAAGTAC 59.246 41.667 0.00 0.00 45.00 2.73
2595 9603 6.963242 TCAAGCTTAACGAAGTACTACATACG 59.037 38.462 0.00 0.54 45.00 3.06
2616 9624 1.385528 AAGGTCGCTTTTGTTTCCGT 58.614 45.000 0.00 0.00 0.00 4.69
2646 9656 2.325082 ATGGTGTGTCGCTTTCGGC 61.325 57.895 0.00 0.00 41.43 5.54
2739 9749 3.686227 AATGATGGTTGCCCCTTGATA 57.314 42.857 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 1.741706 GATTAGTCGGACGACACTGGA 59.258 52.381 24.48 7.63 46.76 3.86
58 60 0.946221 GGCCATCCGCTGATTAGTCG 60.946 60.000 0.00 0.00 37.74 4.18
60 62 1.056700 AGGGCCATCCGCTGATTAGT 61.057 55.000 6.18 0.00 41.52 2.24
93 95 1.689233 AGATGCCGCCTCTACCCAA 60.689 57.895 0.00 0.00 0.00 4.12
135 137 6.092670 CGGAATGCAAAAAGTCTCTCTTCATA 59.907 38.462 0.00 0.00 35.02 2.15
293 295 4.755437 TGATGTCATGGAGGAGGATGATA 58.245 43.478 0.00 0.00 31.40 2.15
322 324 0.810031 CGCCCCGTCGAAGAATCAAT 60.810 55.000 0.00 0.00 39.69 2.57
326 328 2.183555 GTCGCCCCGTCGAAGAAT 59.816 61.111 0.00 0.00 39.69 2.40
351 354 0.179124 GGAGAGCCTTCACTAGTGCG 60.179 60.000 18.45 11.02 0.00 5.34
358 361 2.185608 GCGAGGGAGAGCCTTCAC 59.814 66.667 0.00 0.00 40.15 3.18
361 364 3.453679 GACGCGAGGGAGAGCCTT 61.454 66.667 15.93 0.00 0.00 4.35
464 467 4.509737 GTCGAGGTGCCCGGTAGC 62.510 72.222 0.00 0.00 0.00 3.58
465 468 3.066190 TGTCGAGGTGCCCGGTAG 61.066 66.667 0.00 0.00 0.00 3.18
466 469 3.376078 GTGTCGAGGTGCCCGGTA 61.376 66.667 0.00 0.00 0.00 4.02
469 472 4.351938 TTCGTGTCGAGGTGCCCG 62.352 66.667 0.00 0.00 37.14 6.13
470 473 2.430382 TTCTTCGTGTCGAGGTGCCC 62.430 60.000 0.00 0.00 37.14 5.36
471 474 1.006571 TTCTTCGTGTCGAGGTGCC 60.007 57.895 0.00 0.00 37.14 5.01
472 475 0.039437 TCTTCTTCGTGTCGAGGTGC 60.039 55.000 0.00 0.00 37.14 5.01
474 477 1.536331 GACTCTTCTTCGTGTCGAGGT 59.464 52.381 0.00 0.00 37.14 3.85
475 478 1.807742 AGACTCTTCTTCGTGTCGAGG 59.192 52.381 0.00 0.00 37.14 4.63
476 479 3.546002 AAGACTCTTCTTCGTGTCGAG 57.454 47.619 0.00 0.00 37.55 4.04
478 481 3.604627 GCTAAAGACTCTTCTTCGTGTCG 59.395 47.826 0.00 0.00 41.56 4.35
479 482 3.604627 CGCTAAAGACTCTTCTTCGTGTC 59.395 47.826 0.00 0.00 41.56 3.67
481 484 3.822996 TCGCTAAAGACTCTTCTTCGTG 58.177 45.455 0.00 0.00 41.56 4.35
483 486 3.854809 CCTTCGCTAAAGACTCTTCTTCG 59.145 47.826 0.00 0.00 41.56 3.79
484 487 3.615056 GCCTTCGCTAAAGACTCTTCTTC 59.385 47.826 0.00 0.00 41.56 2.87
486 489 2.563179 TGCCTTCGCTAAAGACTCTTCT 59.437 45.455 0.00 0.00 37.12 2.85
487 490 2.960819 TGCCTTCGCTAAAGACTCTTC 58.039 47.619 0.00 0.00 37.12 2.87
489 492 2.563179 TCTTGCCTTCGCTAAAGACTCT 59.437 45.455 0.00 0.00 37.12 3.24
490 493 2.960819 TCTTGCCTTCGCTAAAGACTC 58.039 47.619 0.00 0.00 37.12 3.36
492 495 2.159824 GGTTCTTGCCTTCGCTAAAGAC 59.840 50.000 0.00 0.00 37.12 3.01
494 497 2.151202 TGGTTCTTGCCTTCGCTAAAG 58.849 47.619 0.00 0.00 35.36 1.85
496 499 1.808411 CTGGTTCTTGCCTTCGCTAA 58.192 50.000 0.00 0.00 35.36 3.09
498 501 1.968540 GCTGGTTCTTGCCTTCGCT 60.969 57.895 0.00 0.00 35.36 4.93
500 503 3.267974 GGCTGGTTCTTGCCTTCG 58.732 61.111 0.00 0.00 45.26 3.79
506 509 0.245539 CATGCAAGGGCTGGTTCTTG 59.754 55.000 0.00 0.00 42.19 3.02
507 510 0.178953 ACATGCAAGGGCTGGTTCTT 60.179 50.000 0.00 0.00 41.91 2.52
509 512 1.588082 CACATGCAAGGGCTGGTTC 59.412 57.895 0.00 0.00 41.91 3.62
510 513 2.576832 GCACATGCAAGGGCTGGTT 61.577 57.895 9.34 0.00 41.91 3.67
511 514 2.993264 GCACATGCAAGGGCTGGT 60.993 61.111 9.34 0.00 41.91 4.00
512 515 3.766691 GGCACATGCAAGGGCTGG 61.767 66.667 16.75 0.00 44.36 4.85
513 516 1.895020 ATTGGCACATGCAAGGGCTG 61.895 55.000 16.75 0.00 44.36 4.85
514 517 1.610554 GATTGGCACATGCAAGGGCT 61.611 55.000 16.75 0.00 44.36 5.19
515 518 1.153509 GATTGGCACATGCAAGGGC 60.154 57.895 7.86 7.86 44.36 5.19
517 520 1.140161 CGGATTGGCACATGCAAGG 59.860 57.895 6.15 0.00 44.36 3.61
518 521 0.244450 AACGGATTGGCACATGCAAG 59.756 50.000 6.15 0.00 44.36 4.01
519 522 0.678395 AAACGGATTGGCACATGCAA 59.322 45.000 6.15 0.00 44.36 4.08
520 523 1.472082 CTAAACGGATTGGCACATGCA 59.528 47.619 6.15 0.00 44.36 3.96
521 524 1.202290 CCTAAACGGATTGGCACATGC 60.202 52.381 0.00 0.00 33.24 4.06
522 525 1.405105 CCCTAAACGGATTGGCACATG 59.595 52.381 0.00 0.00 33.24 3.21
523 526 1.684869 CCCCTAAACGGATTGGCACAT 60.685 52.381 0.00 0.00 33.24 3.21
525 528 0.323087 ACCCCTAAACGGATTGGCAC 60.323 55.000 0.00 0.00 33.16 5.01
526 529 0.406361 AACCCCTAAACGGATTGGCA 59.594 50.000 0.00 0.00 33.16 4.92
527 530 1.100510 GAACCCCTAAACGGATTGGC 58.899 55.000 0.00 0.00 33.16 4.52
528 531 2.801077 AGAACCCCTAAACGGATTGG 57.199 50.000 0.00 0.00 33.16 3.16
529 532 5.433526 TGAATAGAACCCCTAAACGGATTG 58.566 41.667 0.00 0.00 33.16 2.67
530 533 5.427481 TCTGAATAGAACCCCTAAACGGATT 59.573 40.000 0.00 0.00 33.16 3.01
531 534 4.966805 TCTGAATAGAACCCCTAAACGGAT 59.033 41.667 0.00 0.00 33.16 4.18
532 535 4.355549 TCTGAATAGAACCCCTAAACGGA 58.644 43.478 0.00 0.00 33.16 4.69
533 536 4.161754 ACTCTGAATAGAACCCCTAAACGG 59.838 45.833 0.00 0.00 31.21 4.44
534 537 5.109903 CACTCTGAATAGAACCCCTAAACG 58.890 45.833 0.00 0.00 31.21 3.60
535 538 5.189145 TCCACTCTGAATAGAACCCCTAAAC 59.811 44.000 0.00 0.00 31.21 2.01
536 539 5.347124 TCCACTCTGAATAGAACCCCTAAA 58.653 41.667 0.00 0.00 31.21 1.85
538 541 4.232122 TCTCCACTCTGAATAGAACCCCTA 59.768 45.833 0.00 0.00 31.21 3.53
540 543 3.375699 TCTCCACTCTGAATAGAACCCC 58.624 50.000 0.00 0.00 31.21 4.95
541 544 4.282496 TCTCTCCACTCTGAATAGAACCC 58.718 47.826 0.00 0.00 31.21 4.11
543 546 6.816140 CCTTTTCTCTCCACTCTGAATAGAAC 59.184 42.308 0.00 0.00 31.21 3.01
544 547 6.575254 GCCTTTTCTCTCCACTCTGAATAGAA 60.575 42.308 0.00 0.00 31.21 2.10
545 548 5.105146 GCCTTTTCTCTCCACTCTGAATAGA 60.105 44.000 0.00 0.00 0.00 1.98
546 549 5.115480 GCCTTTTCTCTCCACTCTGAATAG 58.885 45.833 0.00 0.00 0.00 1.73
547 550 4.080863 GGCCTTTTCTCTCCACTCTGAATA 60.081 45.833 0.00 0.00 0.00 1.75
548 551 3.308046 GGCCTTTTCTCTCCACTCTGAAT 60.308 47.826 0.00 0.00 0.00 2.57
549 552 2.039084 GGCCTTTTCTCTCCACTCTGAA 59.961 50.000 0.00 0.00 0.00 3.02
551 554 1.339535 GGGCCTTTTCTCTCCACTCTG 60.340 57.143 0.84 0.00 0.00 3.35
552 555 0.988063 GGGCCTTTTCTCTCCACTCT 59.012 55.000 0.84 0.00 0.00 3.24
587 590 3.567164 CACTTCATCCAAGACTTTGCAGT 59.433 43.478 0.00 0.00 35.82 4.40
588 591 3.817084 TCACTTCATCCAAGACTTTGCAG 59.183 43.478 0.00 0.00 35.82 4.41
591 594 4.214971 CCTGTCACTTCATCCAAGACTTTG 59.785 45.833 0.00 0.00 35.82 2.77
593 596 3.808618 GCCTGTCACTTCATCCAAGACTT 60.809 47.826 0.00 0.00 35.82 3.01
594 597 2.289945 GCCTGTCACTTCATCCAAGACT 60.290 50.000 0.00 0.00 35.82 3.24
595 598 2.079925 GCCTGTCACTTCATCCAAGAC 58.920 52.381 0.00 0.00 35.82 3.01
597 600 2.082231 CTGCCTGTCACTTCATCCAAG 58.918 52.381 0.00 0.00 38.21 3.61
598 601 1.699083 TCTGCCTGTCACTTCATCCAA 59.301 47.619 0.00 0.00 0.00 3.53
600 603 2.170187 AGATCTGCCTGTCACTTCATCC 59.830 50.000 0.00 0.00 0.00 3.51
601 604 3.540314 AGATCTGCCTGTCACTTCATC 57.460 47.619 0.00 0.00 0.00 2.92
604 607 3.520569 GAGAAGATCTGCCTGTCACTTC 58.479 50.000 0.00 0.00 35.47 3.01
605 608 2.235898 GGAGAAGATCTGCCTGTCACTT 59.764 50.000 0.00 0.00 0.00 3.16
607 610 1.830477 AGGAGAAGATCTGCCTGTCAC 59.170 52.381 10.36 0.00 35.21 3.67
608 611 1.829849 CAGGAGAAGATCTGCCTGTCA 59.170 52.381 22.34 0.00 37.20 3.58
609 612 1.138661 CCAGGAGAAGATCTGCCTGTC 59.861 57.143 25.75 10.02 38.75 3.51
610 613 1.202330 CCAGGAGAAGATCTGCCTGT 58.798 55.000 25.75 1.80 38.75 4.00
611 614 0.179051 GCCAGGAGAAGATCTGCCTG 60.179 60.000 23.14 23.14 39.43 4.85
612 615 1.344191 GGCCAGGAGAAGATCTGCCT 61.344 60.000 10.03 8.16 35.21 4.75
613 616 1.148048 GGCCAGGAGAAGATCTGCC 59.852 63.158 0.00 0.00 35.21 4.85
614 617 0.473326 ATGGCCAGGAGAAGATCTGC 59.527 55.000 13.05 0.00 34.82 4.26
615 618 1.814634 GCATGGCCAGGAGAAGATCTG 60.815 57.143 24.18 6.42 0.00 2.90
616 619 0.473326 GCATGGCCAGGAGAAGATCT 59.527 55.000 24.18 0.00 0.00 2.75
617 620 0.182061 TGCATGGCCAGGAGAAGATC 59.818 55.000 24.18 1.17 0.00 2.75
620 623 1.134007 TGTATGCATGGCCAGGAGAAG 60.134 52.381 24.18 2.53 0.00 2.85
621 624 0.918258 TGTATGCATGGCCAGGAGAA 59.082 50.000 24.18 5.89 0.00 2.87
622 625 0.918258 TTGTATGCATGGCCAGGAGA 59.082 50.000 24.18 6.82 0.00 3.71
623 626 1.027357 GTTGTATGCATGGCCAGGAG 58.973 55.000 24.18 10.12 0.00 3.69
626 629 0.742505 CCAGTTGTATGCATGGCCAG 59.257 55.000 13.05 4.54 0.00 4.85
630 633 5.247862 TGATATAGCCAGTTGTATGCATGG 58.752 41.667 10.16 2.99 35.84 3.66
631 634 6.997239 ATGATATAGCCAGTTGTATGCATG 57.003 37.500 10.16 0.00 0.00 4.06
632 635 7.855375 ACTATGATATAGCCAGTTGTATGCAT 58.145 34.615 3.79 3.79 0.00 3.96
643 646 9.936329 TGGTTGATAGATACTATGATATAGCCA 57.064 33.333 0.00 0.00 0.00 4.75
650 653 7.334090 GGCACATGGTTGATAGATACTATGAT 58.666 38.462 0.00 0.00 36.90 2.45
651 654 6.572314 CGGCACATGGTTGATAGATACTATGA 60.572 42.308 0.00 0.00 36.90 2.15
652 655 5.578336 CGGCACATGGTTGATAGATACTATG 59.422 44.000 0.00 0.00 38.66 2.23
653 656 5.480422 TCGGCACATGGTTGATAGATACTAT 59.520 40.000 0.00 0.00 0.00 2.12
655 658 3.641436 TCGGCACATGGTTGATAGATACT 59.359 43.478 0.00 0.00 0.00 2.12
656 659 3.990092 TCGGCACATGGTTGATAGATAC 58.010 45.455 0.00 0.00 0.00 2.24
657 660 4.528206 AGATCGGCACATGGTTGATAGATA 59.472 41.667 0.00 0.00 0.00 1.98
658 661 3.326006 AGATCGGCACATGGTTGATAGAT 59.674 43.478 0.00 0.00 0.00 1.98
660 663 2.804527 CAGATCGGCACATGGTTGATAG 59.195 50.000 0.00 0.00 0.00 2.08
661 664 2.837498 CAGATCGGCACATGGTTGATA 58.163 47.619 0.00 0.00 0.00 2.15
662 665 1.671979 CAGATCGGCACATGGTTGAT 58.328 50.000 0.00 0.00 0.00 2.57
663 666 1.026182 GCAGATCGGCACATGGTTGA 61.026 55.000 13.30 0.00 0.00 3.18
673 676 3.406764 AGGAATTAATCAGCAGATCGGC 58.593 45.455 10.10 10.10 31.90 5.54
674 677 5.303971 AGAAGGAATTAATCAGCAGATCGG 58.696 41.667 0.00 0.00 31.90 4.18
681 684 5.679601 AGTGAGGAGAAGGAATTAATCAGC 58.320 41.667 0.00 0.00 0.00 4.26
813 2952 7.816640 AGTATTGAATTGTCTACGTTTGCATT 58.183 30.769 0.00 0.00 0.00 3.56
882 3028 5.869649 TCTAGTTGAAGGCTGCACATATA 57.130 39.130 0.00 0.00 0.00 0.86
883 3029 4.760530 TCTAGTTGAAGGCTGCACATAT 57.239 40.909 0.00 0.00 0.00 1.78
884 3030 4.551702 TTCTAGTTGAAGGCTGCACATA 57.448 40.909 0.00 0.00 0.00 2.29
919 3090 2.136196 TTGGCCGCGTTGATTTGTCC 62.136 55.000 4.92 0.00 0.00 4.02
997 3219 6.786959 AGAGATATCCTAAGCTGTTCCATTCT 59.213 38.462 0.00 0.00 0.00 2.40
1023 3245 3.294908 CGCCATCGTGTTGTTGATG 57.705 52.632 0.00 0.00 41.27 3.07
1035 3257 1.519455 CGGAGAAGGTGACGCCATC 60.519 63.158 7.99 4.83 40.61 3.51
1053 3275 3.529533 CATCTGGATCACTGTGGAAGAC 58.470 50.000 8.11 0.00 0.00 3.01
1062 3284 1.489649 CTTGGAGGCATCTGGATCACT 59.510 52.381 0.00 0.00 0.00 3.41
1335 3569 2.865670 GCACGAGATGGTGAGGATGATC 60.866 54.545 0.00 0.00 40.38 2.92
1380 3614 3.583276 CTGGTCGCGGCCAAGTACA 62.583 63.158 34.61 9.81 38.18 2.90
1466 3700 4.767255 CGGGAGTCCACTGCTGCC 62.767 72.222 12.30 0.00 40.49 4.85
1612 3846 0.687354 TTGAGAAGCTCCTGGGTGTC 59.313 55.000 0.00 0.00 0.00 3.67
1657 3891 5.593909 AGATCATGAACACAAAACTGGACAA 59.406 36.000 0.00 0.00 0.00 3.18
1873 8352 4.256231 AGTCCTATACCAGATCTCCTCCT 58.744 47.826 0.00 0.00 0.00 3.69
1874 8353 4.668138 AGTCCTATACCAGATCTCCTCC 57.332 50.000 0.00 0.00 0.00 4.30
1875 8354 6.382919 ACTAGTCCTATACCAGATCTCCTC 57.617 45.833 0.00 0.00 0.00 3.71
1876 8355 8.471302 AATACTAGTCCTATACCAGATCTCCT 57.529 38.462 0.00 0.00 0.00 3.69
1877 8356 9.617523 GTAATACTAGTCCTATACCAGATCTCC 57.382 40.741 0.00 0.00 0.00 3.71
2019 8503 8.218338 ACATACATGCCTTTTCTCTCTAATTG 57.782 34.615 0.00 0.00 0.00 2.32
2072 8563 4.058817 AGGTAGACTTTCAGCAAACTTCG 58.941 43.478 0.00 0.00 0.00 3.79
2076 8567 7.435068 TTCAATAGGTAGACTTTCAGCAAAC 57.565 36.000 0.00 0.00 0.00 2.93
2112 8631 3.368948 GCTTTCCCCGCAAATTTGGAATA 60.369 43.478 19.47 5.42 36.79 1.75
2225 8748 7.007725 CACGCTGAATATGAAGTTCACAATTTC 59.992 37.037 7.96 9.30 32.55 2.17
2229 8752 4.994217 TCACGCTGAATATGAAGTTCACAA 59.006 37.500 7.96 0.00 32.55 3.33
2248 8771 4.747108 AGACATTGACAAAAGACTCTCACG 59.253 41.667 0.00 0.00 0.00 4.35
2267 8797 7.869417 ACGTAGTTTCCCTTGTAAGGAAGACA 61.869 42.308 12.18 0.00 45.05 3.41
2293 8824 5.126779 TGAAACCACACTTACTATTGTGCA 58.873 37.500 0.00 0.00 41.57 4.57
2316 8849 2.673368 GCGGAACAGACGAATCTTCAAT 59.327 45.455 0.00 0.00 30.42 2.57
2329 8862 1.372087 GCATGGAAGGAGCGGAACAG 61.372 60.000 0.00 0.00 0.00 3.16
2497 9069 5.242393 GGCATAATTTGTGGACATCAGCTAT 59.758 40.000 0.00 0.00 0.00 2.97
2511 9083 8.854979 TTTTATGACTTCGATGGCATAATTTG 57.145 30.769 29.77 0.00 34.36 2.32
2533 9105 4.815846 GTGCCAAACAATCCATTGACTTTT 59.184 37.500 6.29 0.00 40.14 2.27
2567 9139 7.398834 TGTAGTACTTCGTTAAGCTTGAAAC 57.601 36.000 9.86 5.59 36.05 2.78
2569 9141 7.482743 CGTATGTAGTACTTCGTTAAGCTTGAA 59.517 37.037 9.86 3.27 36.05 2.69
2578 9150 6.259550 ACCTTTCGTATGTAGTACTTCGTT 57.740 37.500 0.00 0.00 0.00 3.85
2580 9152 4.960354 CGACCTTTCGTATGTAGTACTTCG 59.040 45.833 0.00 0.00 40.61 3.79
2595 9603 2.223409 ACGGAAACAAAAGCGACCTTTC 60.223 45.455 0.00 0.00 40.30 2.62
2616 9624 0.536233 CACACCATGGACCAACGGAA 60.536 55.000 21.47 0.00 0.00 4.30
2646 9656 8.830580 ACATCTTCAATATTACTCCATTCAACG 58.169 33.333 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.