Multiple sequence alignment - TraesCS7D01G478800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G478800 chr7D 100.000 5136 0 0 1 5136 589511708 589516843 0.000000e+00 9485.0
1 TraesCS7D01G478800 chr7D 89.933 149 12 3 2571 2717 146864248 146864395 6.790000e-44 189.0
2 TraesCS7D01G478800 chr7D 93.617 47 3 0 452 498 589512122 589512168 2.570000e-08 71.3
3 TraesCS7D01G478800 chr7D 93.617 47 3 0 415 461 589512159 589512205 2.570000e-08 71.3
4 TraesCS7D01G478800 chr7B 91.111 4725 219 99 468 5053 664106448 664111110 0.000000e+00 6213.0
5 TraesCS7D01G478800 chr7B 89.933 149 12 3 2571 2717 109703724 109703871 6.790000e-44 189.0
6 TraesCS7D01G478800 chr7B 92.941 85 3 1 5055 5136 664112830 664112914 2.510000e-23 121.0
7 TraesCS7D01G478800 chr7A 90.737 4394 201 96 452 4689 681015573 681011230 0.000000e+00 5670.0
8 TraesCS7D01G478800 chr7A 91.485 458 18 6 4689 5136 681011168 681010722 1.220000e-170 610.0
9 TraesCS7D01G478800 chr7A 89.933 149 12 3 2571 2717 148416443 148416590 6.790000e-44 189.0
10 TraesCS7D01G478800 chr7A 85.821 134 19 0 1036 1169 637052993 637052860 5.360000e-30 143.0
11 TraesCS7D01G478800 chr3A 81.557 488 63 22 1016 1500 432040458 432040921 1.350000e-100 377.0
12 TraesCS7D01G478800 chr3A 89.510 143 14 1 2577 2718 432041787 432041929 4.090000e-41 180.0
13 TraesCS7D01G478800 chr3A 93.333 45 3 0 2172 2216 432041390 432041434 3.320000e-07 67.6
14 TraesCS7D01G478800 chr3D 88.412 233 27 0 1034 1266 302850146 302849914 1.090000e-71 281.0
15 TraesCS7D01G478800 chr3B 86.508 252 32 2 1016 1266 418660074 418660324 5.070000e-70 276.0
16 TraesCS7D01G478800 chr6A 86.400 250 34 0 991 1240 543394795 543395044 1.820000e-69 274.0
17 TraesCS7D01G478800 chr6A 94.309 123 7 0 2594 2716 543396172 543396294 6.790000e-44 189.0
18 TraesCS7D01G478800 chr6D 86.290 248 34 0 993 1240 397082337 397082584 2.360000e-68 270.0
19 TraesCS7D01G478800 chr6D 94.309 123 7 0 2594 2716 397083712 397083834 6.790000e-44 189.0
20 TraesCS7D01G478800 chr6B 86.307 241 33 0 1000 1240 593711933 593712173 3.940000e-66 263.0
21 TraesCS7D01G478800 chr6B 94.309 123 7 0 2594 2716 593713298 593713420 6.790000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G478800 chr7D 589511708 589516843 5135 False 9485.0 9485 100.000000 1 5136 1 chr7D.!!$F2 5135
1 TraesCS7D01G478800 chr7B 664106448 664112914 6466 False 3167.0 6213 92.026000 468 5136 2 chr7B.!!$F2 4668
2 TraesCS7D01G478800 chr7A 681010722 681015573 4851 True 3140.0 5670 91.111000 452 5136 2 chr7A.!!$R2 4684
3 TraesCS7D01G478800 chr3A 432040458 432041929 1471 False 208.2 377 88.133333 1016 2718 3 chr3A.!!$F1 1702
4 TraesCS7D01G478800 chr6A 543394795 543396294 1499 False 231.5 274 90.354500 991 2716 2 chr6A.!!$F1 1725
5 TraesCS7D01G478800 chr6D 397082337 397083834 1497 False 229.5 270 90.299500 993 2716 2 chr6D.!!$F1 1723
6 TraesCS7D01G478800 chr6B 593711933 593713420 1487 False 226.0 263 90.308000 1000 2716 2 chr6B.!!$F1 1716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 351 0.034059 GGTGATCTAGTCATGCCGGG 59.966 60.0 2.18 0.00 39.48 5.73 F
409 410 0.039798 TCACGCACTTGACGTAGACC 60.040 55.0 0.00 0.00 42.96 3.85 F
945 995 0.325933 CCCACACTCAGCATCTTCCA 59.674 55.0 0.00 0.00 0.00 3.53 F
1482 1563 0.608130 TCTGGTACACGCTCATGCTT 59.392 50.0 0.00 0.00 36.97 3.91 F
2201 2387 0.681733 ACATGTTCGTGTGGAGCTCT 59.318 50.0 14.64 0.00 0.00 4.09 F
3647 3992 0.430110 GAAAGTCTGTCGCGACGTTC 59.570 55.0 31.88 23.47 42.19 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 2535 0.804989 GCAACTCTGATTTGGACGGG 59.195 55.000 9.40 0.0 0.00 5.28 R
2363 2569 1.820519 GTCATGGTGTGATGCATGGTT 59.179 47.619 2.46 0.0 39.48 3.67 R
2394 2606 4.436998 GCCGCTCACGCCTGTAGT 62.437 66.667 0.00 0.0 38.22 2.73 R
3459 3799 2.634940 GCTGAACATAGCCATCCCTAGA 59.365 50.000 0.00 0.0 37.73 2.43 R
3650 3995 0.036388 TCAAGAACCTCACCGCCATC 60.036 55.000 0.00 0.0 0.00 3.51 R
4970 5424 0.250858 CCTCCACATGCACAGACCAA 60.251 55.000 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.913137 ATGTGACCTGAGAAAACAAAACA 57.087 34.783 0.00 0.00 0.00 2.83
23 24 5.054390 TGTGACCTGAGAAAACAAAACAC 57.946 39.130 0.00 0.00 0.00 3.32
24 25 4.082463 TGTGACCTGAGAAAACAAAACACC 60.082 41.667 0.00 0.00 0.00 4.16
25 26 3.127895 TGACCTGAGAAAACAAAACACCG 59.872 43.478 0.00 0.00 0.00 4.94
26 27 3.349022 ACCTGAGAAAACAAAACACCGA 58.651 40.909 0.00 0.00 0.00 4.69
27 28 3.951680 ACCTGAGAAAACAAAACACCGAT 59.048 39.130 0.00 0.00 0.00 4.18
28 29 5.127491 ACCTGAGAAAACAAAACACCGATA 58.873 37.500 0.00 0.00 0.00 2.92
29 30 5.591067 ACCTGAGAAAACAAAACACCGATAA 59.409 36.000 0.00 0.00 0.00 1.75
30 31 6.142817 CCTGAGAAAACAAAACACCGATAAG 58.857 40.000 0.00 0.00 0.00 1.73
32 33 5.823570 TGAGAAAACAAAACACCGATAAGGA 59.176 36.000 0.00 0.00 45.00 3.36
33 34 6.319152 TGAGAAAACAAAACACCGATAAGGAA 59.681 34.615 0.00 0.00 45.00 3.36
34 35 6.500910 AGAAAACAAAACACCGATAAGGAAC 58.499 36.000 0.00 0.00 45.00 3.62
35 36 4.841443 AACAAAACACCGATAAGGAACC 57.159 40.909 0.00 0.00 45.00 3.62
36 37 2.809696 ACAAAACACCGATAAGGAACCG 59.190 45.455 0.00 0.00 45.00 4.44
37 38 2.809696 CAAAACACCGATAAGGAACCGT 59.190 45.455 0.00 0.00 45.00 4.83
38 39 3.959535 AAACACCGATAAGGAACCGTA 57.040 42.857 0.00 0.00 45.00 4.02
39 40 3.515330 AACACCGATAAGGAACCGTAG 57.485 47.619 0.00 0.00 45.00 3.51
54 55 1.309950 CGTAGGAGCTCCGAAGATCA 58.690 55.000 26.95 4.85 39.77 2.92
55 56 1.883275 CGTAGGAGCTCCGAAGATCAT 59.117 52.381 26.95 9.60 39.77 2.45
56 57 2.351253 CGTAGGAGCTCCGAAGATCATG 60.351 54.545 26.95 8.88 39.77 3.07
57 58 2.079170 AGGAGCTCCGAAGATCATGA 57.921 50.000 26.95 0.00 39.77 3.07
58 59 2.392662 AGGAGCTCCGAAGATCATGAA 58.607 47.619 26.95 0.00 39.77 2.57
59 60 2.768527 AGGAGCTCCGAAGATCATGAAA 59.231 45.455 26.95 0.00 39.77 2.69
60 61 3.198635 AGGAGCTCCGAAGATCATGAAAA 59.801 43.478 26.95 0.00 39.77 2.29
61 62 3.311048 GGAGCTCCGAAGATCATGAAAAC 59.689 47.826 19.06 0.00 39.77 2.43
62 63 4.187694 GAGCTCCGAAGATCATGAAAACT 58.812 43.478 0.87 0.00 37.86 2.66
63 64 3.937706 AGCTCCGAAGATCATGAAAACTG 59.062 43.478 0.00 0.00 0.00 3.16
64 65 3.064545 GCTCCGAAGATCATGAAAACTGG 59.935 47.826 0.00 0.00 0.00 4.00
65 66 3.009723 TCCGAAGATCATGAAAACTGGC 58.990 45.455 0.00 0.00 0.00 4.85
66 67 2.098117 CCGAAGATCATGAAAACTGGCC 59.902 50.000 0.00 0.00 0.00 5.36
67 68 2.223112 CGAAGATCATGAAAACTGGCCG 60.223 50.000 0.00 0.00 0.00 6.13
68 69 2.787473 AGATCATGAAAACTGGCCGA 57.213 45.000 0.00 0.00 0.00 5.54
69 70 3.071874 AGATCATGAAAACTGGCCGAA 57.928 42.857 0.00 0.00 0.00 4.30
70 71 3.624777 AGATCATGAAAACTGGCCGAAT 58.375 40.909 0.00 0.00 0.00 3.34
71 72 3.629398 AGATCATGAAAACTGGCCGAATC 59.371 43.478 0.00 0.00 0.00 2.52
72 73 2.091541 TCATGAAAACTGGCCGAATCC 58.908 47.619 0.00 0.00 0.00 3.01
73 74 1.818060 CATGAAAACTGGCCGAATCCA 59.182 47.619 0.00 0.00 34.42 3.41
87 88 3.220222 TCCAGGCGGATGCACTAG 58.780 61.111 0.00 0.00 45.35 2.57
88 89 1.381191 TCCAGGCGGATGCACTAGA 60.381 57.895 0.00 0.00 45.35 2.43
89 90 0.975556 TCCAGGCGGATGCACTAGAA 60.976 55.000 0.00 0.00 45.35 2.10
90 91 0.107703 CCAGGCGGATGCACTAGAAA 60.108 55.000 0.00 0.00 45.35 2.52
91 92 1.009829 CAGGCGGATGCACTAGAAAC 58.990 55.000 0.00 0.00 45.35 2.78
92 93 0.107654 AGGCGGATGCACTAGAAACC 60.108 55.000 0.00 0.00 45.35 3.27
93 94 0.107654 GGCGGATGCACTAGAAACCT 60.108 55.000 0.00 0.00 45.35 3.50
94 95 1.138266 GGCGGATGCACTAGAAACCTA 59.862 52.381 0.00 0.00 45.35 3.08
95 96 2.419574 GGCGGATGCACTAGAAACCTAA 60.420 50.000 0.00 0.00 45.35 2.69
96 97 3.267483 GCGGATGCACTAGAAACCTAAA 58.733 45.455 0.00 0.00 42.15 1.85
97 98 3.063588 GCGGATGCACTAGAAACCTAAAC 59.936 47.826 0.00 0.00 42.15 2.01
98 99 3.306166 CGGATGCACTAGAAACCTAAACG 59.694 47.826 0.00 0.00 0.00 3.60
99 100 3.621715 GGATGCACTAGAAACCTAAACGG 59.378 47.826 0.00 0.00 39.35 4.44
100 101 4.501071 GATGCACTAGAAACCTAAACGGA 58.499 43.478 0.00 0.00 36.31 4.69
101 102 3.656559 TGCACTAGAAACCTAAACGGAC 58.343 45.455 0.00 0.00 36.31 4.79
102 103 2.998670 GCACTAGAAACCTAAACGGACC 59.001 50.000 0.00 0.00 36.31 4.46
103 104 3.306571 GCACTAGAAACCTAAACGGACCT 60.307 47.826 0.00 0.00 36.31 3.85
104 105 4.243270 CACTAGAAACCTAAACGGACCTG 58.757 47.826 0.00 0.00 36.31 4.00
105 106 4.021719 CACTAGAAACCTAAACGGACCTGA 60.022 45.833 0.00 0.00 36.31 3.86
106 107 4.776308 ACTAGAAACCTAAACGGACCTGAT 59.224 41.667 0.00 0.00 36.31 2.90
107 108 4.203654 AGAAACCTAAACGGACCTGATC 57.796 45.455 0.00 0.00 36.31 2.92
108 109 3.581332 AGAAACCTAAACGGACCTGATCA 59.419 43.478 0.00 0.00 36.31 2.92
109 110 3.329929 AACCTAAACGGACCTGATCAC 57.670 47.619 0.00 0.00 36.31 3.06
110 111 1.203994 ACCTAAACGGACCTGATCACG 59.796 52.381 0.00 0.00 36.31 4.35
111 112 1.475280 CCTAAACGGACCTGATCACGA 59.525 52.381 10.08 0.00 33.16 4.35
112 113 2.094390 CCTAAACGGACCTGATCACGAA 60.094 50.000 10.08 0.00 33.16 3.85
113 114 2.536761 AAACGGACCTGATCACGAAA 57.463 45.000 10.08 0.00 0.00 3.46
114 115 2.080286 AACGGACCTGATCACGAAAG 57.920 50.000 10.08 0.00 0.00 2.62
115 116 1.254026 ACGGACCTGATCACGAAAGA 58.746 50.000 10.08 0.00 0.00 2.52
116 117 1.067776 ACGGACCTGATCACGAAAGAC 60.068 52.381 10.08 0.00 0.00 3.01
117 118 1.736032 CGGACCTGATCACGAAAGACC 60.736 57.143 0.00 0.00 0.00 3.85
118 119 1.405661 GGACCTGATCACGAAAGACCC 60.406 57.143 0.00 0.00 0.00 4.46
119 120 0.246635 ACCTGATCACGAAAGACCCG 59.753 55.000 0.00 0.00 0.00 5.28
120 121 1.084370 CCTGATCACGAAAGACCCGC 61.084 60.000 0.00 0.00 0.00 6.13
121 122 1.079405 TGATCACGAAAGACCCGCC 60.079 57.895 0.00 0.00 0.00 6.13
122 123 2.125673 ATCACGAAAGACCCGCCG 60.126 61.111 0.00 0.00 0.00 6.46
123 124 3.659089 ATCACGAAAGACCCGCCGG 62.659 63.158 0.00 0.00 0.00 6.13
124 125 4.367023 CACGAAAGACCCGCCGGA 62.367 66.667 5.05 0.00 0.00 5.14
125 126 4.065281 ACGAAAGACCCGCCGGAG 62.065 66.667 5.05 0.00 0.00 4.63
126 127 3.755628 CGAAAGACCCGCCGGAGA 61.756 66.667 5.05 0.00 0.00 3.71
127 128 2.125633 GAAAGACCCGCCGGAGAC 60.126 66.667 5.05 0.00 0.00 3.36
128 129 2.920912 AAAGACCCGCCGGAGACA 60.921 61.111 5.05 0.00 0.00 3.41
129 130 2.240162 GAAAGACCCGCCGGAGACAT 62.240 60.000 5.05 0.00 0.00 3.06
130 131 2.521958 AAAGACCCGCCGGAGACATG 62.522 60.000 5.05 0.00 0.00 3.21
131 132 4.530857 GACCCGCCGGAGACATGG 62.531 72.222 5.05 0.00 0.00 3.66
133 134 4.096003 CCCGCCGGAGACATGGTT 62.096 66.667 5.05 0.00 0.00 3.67
134 135 2.511600 CCGCCGGAGACATGGTTC 60.512 66.667 5.05 0.00 0.00 3.62
135 136 2.511600 CGCCGGAGACATGGTTCC 60.512 66.667 5.05 2.49 0.00 3.62
136 137 2.668632 GCCGGAGACATGGTTCCA 59.331 61.111 5.05 0.00 32.87 3.53
137 138 1.745489 GCCGGAGACATGGTTCCAC 60.745 63.158 5.05 5.62 32.87 4.02
138 139 1.676968 CCGGAGACATGGTTCCACA 59.323 57.895 15.48 0.00 32.87 4.17
139 140 0.036164 CCGGAGACATGGTTCCACAA 59.964 55.000 15.48 0.00 32.87 3.33
140 141 1.442769 CGGAGACATGGTTCCACAAG 58.557 55.000 15.48 0.00 32.87 3.16
141 142 1.168714 GGAGACATGGTTCCACAAGC 58.831 55.000 11.64 0.00 33.55 4.01
142 143 1.168714 GAGACATGGTTCCACAAGCC 58.831 55.000 0.00 0.00 0.00 4.35
143 144 0.251341 AGACATGGTTCCACAAGCCC 60.251 55.000 0.00 0.00 0.00 5.19
144 145 0.251341 GACATGGTTCCACAAGCCCT 60.251 55.000 0.00 0.00 0.00 5.19
145 146 0.251341 ACATGGTTCCACAAGCCCTC 60.251 55.000 0.00 0.00 0.00 4.30
146 147 0.967380 CATGGTTCCACAAGCCCTCC 60.967 60.000 0.00 0.00 0.00 4.30
147 148 1.142688 ATGGTTCCACAAGCCCTCCT 61.143 55.000 0.00 0.00 0.00 3.69
148 149 1.002011 GGTTCCACAAGCCCTCCTC 60.002 63.158 0.00 0.00 0.00 3.71
149 150 1.002011 GTTCCACAAGCCCTCCTCC 60.002 63.158 0.00 0.00 0.00 4.30
150 151 2.592993 TTCCACAAGCCCTCCTCCG 61.593 63.158 0.00 0.00 0.00 4.63
151 152 4.101448 CCACAAGCCCTCCTCCGG 62.101 72.222 0.00 0.00 0.00 5.14
171 172 2.414058 CGCAAAGCACACCAACATAA 57.586 45.000 0.00 0.00 0.00 1.90
172 173 2.050691 CGCAAAGCACACCAACATAAC 58.949 47.619 0.00 0.00 0.00 1.89
173 174 2.050691 GCAAAGCACACCAACATAACG 58.949 47.619 0.00 0.00 0.00 3.18
174 175 2.660490 CAAAGCACACCAACATAACGG 58.340 47.619 0.00 0.00 0.00 4.44
175 176 2.264005 AAGCACACCAACATAACGGA 57.736 45.000 0.00 0.00 0.00 4.69
176 177 2.264005 AGCACACCAACATAACGGAA 57.736 45.000 0.00 0.00 0.00 4.30
177 178 2.577700 AGCACACCAACATAACGGAAA 58.422 42.857 0.00 0.00 0.00 3.13
178 179 3.153919 AGCACACCAACATAACGGAAAT 58.846 40.909 0.00 0.00 0.00 2.17
179 180 3.572255 AGCACACCAACATAACGGAAATT 59.428 39.130 0.00 0.00 0.00 1.82
180 181 3.672867 GCACACCAACATAACGGAAATTG 59.327 43.478 0.00 0.00 0.00 2.32
181 182 4.233789 CACACCAACATAACGGAAATTGG 58.766 43.478 0.00 0.00 44.48 3.16
182 183 3.257127 ACACCAACATAACGGAAATTGGG 59.743 43.478 6.29 0.00 43.44 4.12
183 184 2.829120 ACCAACATAACGGAAATTGGGG 59.171 45.455 6.29 0.00 43.44 4.96
184 185 2.167487 CCAACATAACGGAAATTGGGGG 59.833 50.000 0.00 0.00 36.88 5.40
215 216 2.764010 GGGGGAACATTATTCCAACACC 59.236 50.000 7.93 0.00 40.32 4.16
216 217 2.425668 GGGGAACATTATTCCAACACCG 59.574 50.000 7.93 0.00 40.32 4.94
217 218 2.159296 GGGAACATTATTCCAACACCGC 60.159 50.000 7.93 0.00 40.32 5.68
218 219 2.159296 GGAACATTATTCCAACACCGCC 60.159 50.000 0.70 0.00 38.45 6.13
219 220 2.208132 ACATTATTCCAACACCGCCA 57.792 45.000 0.00 0.00 0.00 5.69
220 221 2.733956 ACATTATTCCAACACCGCCAT 58.266 42.857 0.00 0.00 0.00 4.40
221 222 2.687935 ACATTATTCCAACACCGCCATC 59.312 45.455 0.00 0.00 0.00 3.51
222 223 2.799126 TTATTCCAACACCGCCATCT 57.201 45.000 0.00 0.00 0.00 2.90
223 224 2.325583 TATTCCAACACCGCCATCTC 57.674 50.000 0.00 0.00 0.00 2.75
224 225 0.620556 ATTCCAACACCGCCATCTCT 59.379 50.000 0.00 0.00 0.00 3.10
225 226 0.036388 TTCCAACACCGCCATCTCTC 60.036 55.000 0.00 0.00 0.00 3.20
226 227 1.450312 CCAACACCGCCATCTCTCC 60.450 63.158 0.00 0.00 0.00 3.71
227 228 1.811266 CAACACCGCCATCTCTCCG 60.811 63.158 0.00 0.00 0.00 4.63
228 229 3.665675 AACACCGCCATCTCTCCGC 62.666 63.158 0.00 0.00 0.00 5.54
229 230 4.899239 CACCGCCATCTCTCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
231 232 4.292178 CCGCCATCTCTCCGCCTC 62.292 72.222 0.00 0.00 0.00 4.70
232 233 3.531207 CGCCATCTCTCCGCCTCA 61.531 66.667 0.00 0.00 0.00 3.86
233 234 2.903357 GCCATCTCTCCGCCTCAA 59.097 61.111 0.00 0.00 0.00 3.02
234 235 1.221840 GCCATCTCTCCGCCTCAAA 59.778 57.895 0.00 0.00 0.00 2.69
235 236 0.392998 GCCATCTCTCCGCCTCAAAA 60.393 55.000 0.00 0.00 0.00 2.44
236 237 1.373570 CCATCTCTCCGCCTCAAAAC 58.626 55.000 0.00 0.00 0.00 2.43
237 238 1.339055 CCATCTCTCCGCCTCAAAACA 60.339 52.381 0.00 0.00 0.00 2.83
238 239 2.426522 CATCTCTCCGCCTCAAAACAA 58.573 47.619 0.00 0.00 0.00 2.83
239 240 2.631160 TCTCTCCGCCTCAAAACAAA 57.369 45.000 0.00 0.00 0.00 2.83
240 241 2.494059 TCTCTCCGCCTCAAAACAAAG 58.506 47.619 0.00 0.00 0.00 2.77
241 242 2.104111 TCTCTCCGCCTCAAAACAAAGA 59.896 45.455 0.00 0.00 0.00 2.52
242 243 2.218603 TCTCCGCCTCAAAACAAAGAC 58.781 47.619 0.00 0.00 0.00 3.01
243 244 1.266989 CTCCGCCTCAAAACAAAGACC 59.733 52.381 0.00 0.00 0.00 3.85
244 245 1.028905 CCGCCTCAAAACAAAGACCA 58.971 50.000 0.00 0.00 0.00 4.02
245 246 1.407258 CCGCCTCAAAACAAAGACCAA 59.593 47.619 0.00 0.00 0.00 3.67
246 247 2.543653 CCGCCTCAAAACAAAGACCAAG 60.544 50.000 0.00 0.00 0.00 3.61
247 248 2.357637 CGCCTCAAAACAAAGACCAAGA 59.642 45.455 0.00 0.00 0.00 3.02
248 249 3.706698 GCCTCAAAACAAAGACCAAGAC 58.293 45.455 0.00 0.00 0.00 3.01
249 250 3.490933 GCCTCAAAACAAAGACCAAGACC 60.491 47.826 0.00 0.00 0.00 3.85
250 251 3.068165 CCTCAAAACAAAGACCAAGACCC 59.932 47.826 0.00 0.00 0.00 4.46
251 252 3.954258 CTCAAAACAAAGACCAAGACCCT 59.046 43.478 0.00 0.00 0.00 4.34
252 253 4.349365 TCAAAACAAAGACCAAGACCCTT 58.651 39.130 0.00 0.00 0.00 3.95
253 254 5.511363 TCAAAACAAAGACCAAGACCCTTA 58.489 37.500 0.00 0.00 0.00 2.69
254 255 6.133356 TCAAAACAAAGACCAAGACCCTTAT 58.867 36.000 0.00 0.00 0.00 1.73
255 256 6.609616 TCAAAACAAAGACCAAGACCCTTATT 59.390 34.615 0.00 0.00 0.00 1.40
256 257 6.405278 AAACAAAGACCAAGACCCTTATTG 57.595 37.500 0.00 0.00 0.00 1.90
257 258 5.061721 ACAAAGACCAAGACCCTTATTGT 57.938 39.130 0.00 0.00 0.00 2.71
258 259 5.454966 ACAAAGACCAAGACCCTTATTGTT 58.545 37.500 0.00 0.00 0.00 2.83
259 260 5.301805 ACAAAGACCAAGACCCTTATTGTTG 59.698 40.000 0.00 0.00 0.00 3.33
260 261 4.993705 AGACCAAGACCCTTATTGTTGA 57.006 40.909 0.00 0.00 0.00 3.18
261 262 5.520748 AGACCAAGACCCTTATTGTTGAT 57.479 39.130 0.00 0.00 0.00 2.57
262 263 5.256474 AGACCAAGACCCTTATTGTTGATG 58.744 41.667 0.00 0.00 0.00 3.07
263 264 4.998051 ACCAAGACCCTTATTGTTGATGT 58.002 39.130 0.00 0.00 0.00 3.06
264 265 6.012858 AGACCAAGACCCTTATTGTTGATGTA 60.013 38.462 0.00 0.00 0.00 2.29
265 266 5.944007 ACCAAGACCCTTATTGTTGATGTAC 59.056 40.000 0.00 0.00 0.00 2.90
266 267 5.064707 CCAAGACCCTTATTGTTGATGTACG 59.935 44.000 0.00 0.00 0.00 3.67
267 268 5.670792 AGACCCTTATTGTTGATGTACGA 57.329 39.130 0.00 0.00 0.00 3.43
268 269 5.416947 AGACCCTTATTGTTGATGTACGAC 58.583 41.667 0.00 0.00 0.00 4.34
269 270 5.046878 AGACCCTTATTGTTGATGTACGACA 60.047 40.000 0.00 0.00 40.70 4.35
270 271 5.175859 ACCCTTATTGTTGATGTACGACAG 58.824 41.667 0.00 0.00 42.89 3.51
271 272 5.046878 ACCCTTATTGTTGATGTACGACAGA 60.047 40.000 0.00 0.00 42.89 3.41
272 273 6.049149 CCCTTATTGTTGATGTACGACAGAT 58.951 40.000 0.00 0.00 42.89 2.90
273 274 7.147794 ACCCTTATTGTTGATGTACGACAGATA 60.148 37.037 0.00 0.00 42.89 1.98
274 275 7.872993 CCCTTATTGTTGATGTACGACAGATAT 59.127 37.037 0.00 0.00 42.89 1.63
275 276 8.703336 CCTTATTGTTGATGTACGACAGATATG 58.297 37.037 0.00 0.00 42.89 1.78
276 277 8.587952 TTATTGTTGATGTACGACAGATATGG 57.412 34.615 0.00 0.00 42.89 2.74
277 278 4.944048 TGTTGATGTACGACAGATATGGG 58.056 43.478 0.00 0.00 37.91 4.00
278 279 4.404394 TGTTGATGTACGACAGATATGGGT 59.596 41.667 0.00 0.00 37.91 4.51
279 280 4.848562 TGATGTACGACAGATATGGGTC 57.151 45.455 0.00 0.00 0.00 4.46
280 281 4.470602 TGATGTACGACAGATATGGGTCT 58.529 43.478 0.00 0.00 31.88 3.85
282 283 3.893521 TGTACGACAGATATGGGTCTGA 58.106 45.455 10.57 0.00 46.77 3.27
283 284 4.470602 TGTACGACAGATATGGGTCTGAT 58.529 43.478 10.57 0.00 46.77 2.90
284 285 5.627135 TGTACGACAGATATGGGTCTGATA 58.373 41.667 10.57 0.00 46.77 2.15
285 286 6.246163 TGTACGACAGATATGGGTCTGATAT 58.754 40.000 10.57 0.00 46.77 1.63
286 287 5.906113 ACGACAGATATGGGTCTGATATC 57.094 43.478 10.57 0.00 46.77 1.63
287 288 4.396478 ACGACAGATATGGGTCTGATATCG 59.604 45.833 10.57 11.06 46.77 2.92
288 289 4.636206 CGACAGATATGGGTCTGATATCGA 59.364 45.833 10.57 0.00 46.77 3.59
289 290 5.220758 CGACAGATATGGGTCTGATATCGAG 60.221 48.000 10.57 0.00 46.77 4.04
290 291 4.400884 ACAGATATGGGTCTGATATCGAGC 59.599 45.833 10.57 14.38 46.77 5.03
291 292 4.644234 CAGATATGGGTCTGATATCGAGCT 59.356 45.833 19.01 0.00 46.77 4.09
292 293 4.887071 AGATATGGGTCTGATATCGAGCTC 59.113 45.833 19.01 2.73 37.71 4.09
293 294 2.364972 TGGGTCTGATATCGAGCTCA 57.635 50.000 15.40 14.54 0.00 4.26
294 295 1.957177 TGGGTCTGATATCGAGCTCAC 59.043 52.381 15.40 1.00 0.00 3.51
295 296 1.271102 GGGTCTGATATCGAGCTCACC 59.729 57.143 15.40 10.63 0.00 4.02
296 297 1.068885 GGTCTGATATCGAGCTCACCG 60.069 57.143 15.40 0.00 0.00 4.94
297 298 0.593618 TCTGATATCGAGCTCACCGC 59.406 55.000 15.40 0.00 39.57 5.68
306 307 2.125753 GCTCACCGCTGTCCAGAG 60.126 66.667 0.00 0.00 35.14 3.35
307 308 2.125753 CTCACCGCTGTCCAGAGC 60.126 66.667 0.00 0.00 35.46 4.09
308 309 3.655810 CTCACCGCTGTCCAGAGCC 62.656 68.421 0.00 0.00 35.36 4.70
309 310 4.007644 CACCGCTGTCCAGAGCCA 62.008 66.667 0.00 0.00 35.36 4.75
310 311 3.005539 ACCGCTGTCCAGAGCCAT 61.006 61.111 0.00 0.00 35.36 4.40
311 312 2.513204 CCGCTGTCCAGAGCCATG 60.513 66.667 0.00 0.00 35.36 3.66
312 313 2.580815 CGCTGTCCAGAGCCATGA 59.419 61.111 0.00 0.00 35.36 3.07
313 314 1.078918 CGCTGTCCAGAGCCATGAA 60.079 57.895 0.00 0.00 35.36 2.57
314 315 1.364626 CGCTGTCCAGAGCCATGAAC 61.365 60.000 0.00 0.00 35.36 3.18
315 316 1.028868 GCTGTCCAGAGCCATGAACC 61.029 60.000 0.00 0.00 32.35 3.62
316 317 0.742281 CTGTCCAGAGCCATGAACCG 60.742 60.000 0.00 0.00 0.00 4.44
317 318 1.191489 TGTCCAGAGCCATGAACCGA 61.191 55.000 0.00 0.00 0.00 4.69
318 319 0.741221 GTCCAGAGCCATGAACCGAC 60.741 60.000 0.00 0.00 0.00 4.79
319 320 1.191489 TCCAGAGCCATGAACCGACA 61.191 55.000 0.00 0.00 0.00 4.35
320 321 1.021390 CCAGAGCCATGAACCGACAC 61.021 60.000 0.00 0.00 0.00 3.67
321 322 1.079819 AGAGCCATGAACCGACACG 60.080 57.895 0.00 0.00 0.00 4.49
322 323 2.740714 GAGCCATGAACCGACACGC 61.741 63.158 0.00 0.00 0.00 5.34
323 324 2.742372 GCCATGAACCGACACGCT 60.742 61.111 0.00 0.00 0.00 5.07
324 325 2.740714 GCCATGAACCGACACGCTC 61.741 63.158 0.00 0.00 0.00 5.03
325 326 1.079819 CCATGAACCGACACGCTCT 60.080 57.895 0.00 0.00 0.00 4.09
326 327 0.670546 CCATGAACCGACACGCTCTT 60.671 55.000 0.00 0.00 0.00 2.85
327 328 0.716108 CATGAACCGACACGCTCTTC 59.284 55.000 0.00 0.00 0.00 2.87
328 329 0.603569 ATGAACCGACACGCTCTTCT 59.396 50.000 0.00 0.00 0.00 2.85
329 330 0.039437 TGAACCGACACGCTCTTCTC 60.039 55.000 0.00 0.00 0.00 2.87
330 331 0.241481 GAACCGACACGCTCTTCTCT 59.759 55.000 0.00 0.00 0.00 3.10
331 332 0.039074 AACCGACACGCTCTTCTCTG 60.039 55.000 0.00 0.00 0.00 3.35
332 333 1.153939 CCGACACGCTCTTCTCTGG 60.154 63.158 0.00 0.00 0.00 3.86
333 334 1.581954 CGACACGCTCTTCTCTGGT 59.418 57.895 0.00 0.00 0.00 4.00
334 335 0.730834 CGACACGCTCTTCTCTGGTG 60.731 60.000 0.00 0.00 34.87 4.17
335 336 0.598562 GACACGCTCTTCTCTGGTGA 59.401 55.000 0.00 0.00 33.08 4.02
336 337 1.203523 GACACGCTCTTCTCTGGTGAT 59.796 52.381 0.00 0.00 33.08 3.06
337 338 1.203523 ACACGCTCTTCTCTGGTGATC 59.796 52.381 0.00 0.00 33.08 2.92
338 339 1.476085 CACGCTCTTCTCTGGTGATCT 59.524 52.381 0.00 0.00 0.00 2.75
339 340 2.685388 CACGCTCTTCTCTGGTGATCTA 59.315 50.000 0.00 0.00 0.00 1.98
340 341 2.948979 ACGCTCTTCTCTGGTGATCTAG 59.051 50.000 0.00 0.00 0.00 2.43
341 342 2.948979 CGCTCTTCTCTGGTGATCTAGT 59.051 50.000 0.00 0.00 0.00 2.57
342 343 3.003275 CGCTCTTCTCTGGTGATCTAGTC 59.997 52.174 0.00 0.00 0.00 2.59
343 344 3.951037 GCTCTTCTCTGGTGATCTAGTCA 59.049 47.826 0.00 0.00 0.00 3.41
344 345 4.584325 GCTCTTCTCTGGTGATCTAGTCAT 59.416 45.833 0.00 0.00 39.48 3.06
345 346 5.507817 GCTCTTCTCTGGTGATCTAGTCATG 60.508 48.000 0.00 0.00 39.48 3.07
346 347 4.340666 TCTTCTCTGGTGATCTAGTCATGC 59.659 45.833 0.00 0.00 39.48 4.06
347 348 2.961741 TCTCTGGTGATCTAGTCATGCC 59.038 50.000 0.00 0.00 39.48 4.40
348 349 1.683385 TCTGGTGATCTAGTCATGCCG 59.317 52.381 0.00 0.00 39.48 5.69
349 350 0.752658 TGGTGATCTAGTCATGCCGG 59.247 55.000 0.00 0.00 39.48 6.13
350 351 0.034059 GGTGATCTAGTCATGCCGGG 59.966 60.000 2.18 0.00 39.48 5.73
351 352 0.034059 GTGATCTAGTCATGCCGGGG 59.966 60.000 2.18 0.00 39.48 5.73
352 353 1.004440 GATCTAGTCATGCCGGGGC 60.004 63.158 2.18 1.86 42.35 5.80
366 367 2.892425 GGGCACCGATGAAGAGCG 60.892 66.667 0.00 0.00 40.86 5.03
367 368 3.567797 GGCACCGATGAAGAGCGC 61.568 66.667 0.00 0.00 0.00 5.92
368 369 3.567797 GCACCGATGAAGAGCGCC 61.568 66.667 2.29 0.00 0.00 6.53
369 370 2.125552 CACCGATGAAGAGCGCCA 60.126 61.111 2.29 0.00 0.00 5.69
370 371 2.125512 ACCGATGAAGAGCGCCAC 60.126 61.111 2.29 0.00 0.00 5.01
371 372 2.185350 CCGATGAAGAGCGCCACT 59.815 61.111 2.29 0.14 0.00 4.00
372 373 2.169789 CCGATGAAGAGCGCCACTG 61.170 63.158 2.29 0.00 0.00 3.66
373 374 2.169789 CGATGAAGAGCGCCACTGG 61.170 63.158 2.29 0.00 0.00 4.00
374 375 2.437359 ATGAAGAGCGCCACTGGC 60.437 61.111 10.35 10.35 46.75 4.85
384 385 1.008538 GCCACTGGCTTCAACAACG 60.009 57.895 13.28 0.00 46.69 4.10
385 386 1.008538 CCACTGGCTTCAACAACGC 60.009 57.895 0.00 0.00 0.00 4.84
386 387 1.008538 CACTGGCTTCAACAACGCC 60.009 57.895 0.00 0.00 44.02 5.68
389 390 4.868195 GGCTTCAACAACGCCATC 57.132 55.556 0.00 0.00 43.25 3.51
390 391 2.257353 GGCTTCAACAACGCCATCT 58.743 52.632 0.00 0.00 43.25 2.90
391 392 0.169009 GGCTTCAACAACGCCATCTC 59.831 55.000 0.00 0.00 43.25 2.75
392 393 0.874390 GCTTCAACAACGCCATCTCA 59.126 50.000 0.00 0.00 0.00 3.27
393 394 1.400242 GCTTCAACAACGCCATCTCAC 60.400 52.381 0.00 0.00 0.00 3.51
394 395 0.865111 TTCAACAACGCCATCTCACG 59.135 50.000 0.00 0.00 0.00 4.35
395 396 1.154413 CAACAACGCCATCTCACGC 60.154 57.895 0.00 0.00 0.00 5.34
396 397 1.596752 AACAACGCCATCTCACGCA 60.597 52.632 0.00 0.00 0.00 5.24
397 398 1.841663 AACAACGCCATCTCACGCAC 61.842 55.000 0.00 0.00 0.00 5.34
398 399 2.029288 CAACGCCATCTCACGCACT 61.029 57.895 0.00 0.00 0.00 4.40
399 400 1.301716 AACGCCATCTCACGCACTT 60.302 52.632 0.00 0.00 0.00 3.16
400 401 1.568612 AACGCCATCTCACGCACTTG 61.569 55.000 0.00 0.00 0.00 3.16
401 402 1.737735 CGCCATCTCACGCACTTGA 60.738 57.895 0.00 0.00 0.00 3.02
402 403 1.790387 GCCATCTCACGCACTTGAC 59.210 57.895 0.00 0.00 0.00 3.18
403 404 1.959899 GCCATCTCACGCACTTGACG 61.960 60.000 0.00 0.00 0.00 4.35
404 405 0.667487 CCATCTCACGCACTTGACGT 60.667 55.000 0.00 0.00 46.42 4.34
405 406 1.402325 CCATCTCACGCACTTGACGTA 60.402 52.381 0.00 0.00 42.96 3.57
406 407 1.914051 CATCTCACGCACTTGACGTAG 59.086 52.381 0.00 0.00 42.96 3.51
407 408 1.232119 TCTCACGCACTTGACGTAGA 58.768 50.000 0.00 0.00 42.96 2.59
408 409 1.069432 TCTCACGCACTTGACGTAGAC 60.069 52.381 0.00 0.00 42.96 2.59
409 410 0.039798 TCACGCACTTGACGTAGACC 60.040 55.000 0.00 0.00 42.96 3.85
410 411 1.007336 CACGCACTTGACGTAGACCC 61.007 60.000 0.00 0.00 42.96 4.46
411 412 1.445582 CGCACTTGACGTAGACCCC 60.446 63.158 0.00 0.00 0.00 4.95
412 413 1.445582 GCACTTGACGTAGACCCCG 60.446 63.158 0.00 0.00 0.00 5.73
413 414 1.214589 CACTTGACGTAGACCCCGG 59.785 63.158 0.00 0.00 0.00 5.73
414 415 2.183555 CTTGACGTAGACCCCGGC 59.816 66.667 0.00 0.00 0.00 6.13
415 416 2.283388 TTGACGTAGACCCCGGCT 60.283 61.111 0.00 0.00 33.49 5.52
416 417 2.280823 CTTGACGTAGACCCCGGCTC 62.281 65.000 0.00 0.00 33.49 4.70
417 418 3.885521 GACGTAGACCCCGGCTCG 61.886 72.222 0.00 0.00 0.00 5.03
418 419 4.415150 ACGTAGACCCCGGCTCGA 62.415 66.667 0.00 0.00 0.00 4.04
419 420 3.584052 CGTAGACCCCGGCTCGAG 61.584 72.222 8.45 8.45 0.00 4.04
420 421 3.902086 GTAGACCCCGGCTCGAGC 61.902 72.222 29.38 29.38 41.14 5.03
429 430 4.959596 GGCTCGAGCGCCCATCTC 62.960 72.222 29.81 10.68 44.41 2.75
430 431 4.959596 GCTCGAGCGCCCATCTCC 62.960 72.222 23.61 0.00 0.00 3.71
431 432 3.222855 CTCGAGCGCCCATCTCCT 61.223 66.667 2.29 0.00 0.00 3.69
432 433 2.759973 TCGAGCGCCCATCTCCTT 60.760 61.111 2.29 0.00 0.00 3.36
433 434 2.279784 CGAGCGCCCATCTCCTTC 60.280 66.667 2.29 0.00 0.00 3.46
434 435 2.279784 GAGCGCCCATCTCCTTCG 60.280 66.667 2.29 0.00 0.00 3.79
435 436 2.759973 AGCGCCCATCTCCTTCGA 60.760 61.111 2.29 0.00 0.00 3.71
436 437 2.586357 GCGCCCATCTCCTTCGAC 60.586 66.667 0.00 0.00 0.00 4.20
437 438 2.278857 CGCCCATCTCCTTCGACG 60.279 66.667 0.00 0.00 0.00 5.12
438 439 2.893398 GCCCATCTCCTTCGACGT 59.107 61.111 0.00 0.00 0.00 4.34
439 440 1.227002 GCCCATCTCCTTCGACGTC 60.227 63.158 5.18 5.18 0.00 4.34
440 441 1.064296 CCCATCTCCTTCGACGTCG 59.936 63.158 31.30 31.30 41.45 5.12
441 442 1.586564 CCATCTCCTTCGACGTCGC 60.587 63.158 32.19 0.00 39.60 5.19
442 443 1.136774 CATCTCCTTCGACGTCGCA 59.863 57.895 32.19 21.90 39.60 5.10
443 444 1.134530 CATCTCCTTCGACGTCGCAC 61.135 60.000 32.19 0.00 39.60 5.34
444 445 1.583495 ATCTCCTTCGACGTCGCACA 61.583 55.000 32.19 17.27 39.60 4.57
445 446 1.371267 CTCCTTCGACGTCGCACAA 60.371 57.895 32.19 20.16 39.60 3.33
446 447 1.606350 CTCCTTCGACGTCGCACAAC 61.606 60.000 32.19 0.00 39.60 3.32
447 448 1.947146 CCTTCGACGTCGCACAACA 60.947 57.895 32.19 12.04 39.60 3.33
448 449 1.484227 CCTTCGACGTCGCACAACAA 61.484 55.000 32.19 18.73 39.60 2.83
449 450 0.381428 CTTCGACGTCGCACAACAAC 60.381 55.000 32.19 0.00 39.60 3.32
450 451 1.754436 TTCGACGTCGCACAACAACC 61.754 55.000 32.19 0.00 39.60 3.77
454 455 1.594293 CGTCGCACAACAACCCTCT 60.594 57.895 0.00 0.00 0.00 3.69
463 464 1.562672 AACAACCCTCTAGCGCCCAT 61.563 55.000 2.29 0.00 0.00 4.00
484 485 2.654912 CCTTCGACGTCGCACAACC 61.655 63.158 32.19 0.00 39.60 3.77
491 492 2.668550 GTCGCACAACCACCCTCC 60.669 66.667 0.00 0.00 0.00 4.30
540 541 2.434359 GTTCAGAACCTCCCCGCG 60.434 66.667 0.00 0.00 0.00 6.46
574 580 0.956633 GCGATGAGGGGTACACGATA 59.043 55.000 0.00 0.00 0.00 2.92
595 601 3.810896 GGCGGCTAGGGTTTTGCG 61.811 66.667 0.00 0.00 0.00 4.85
598 604 1.969589 CGGCTAGGGTTTTGCGGTT 60.970 57.895 0.00 0.00 0.00 4.44
612 621 2.745785 CGGTTCGCATTGCCGCTAA 61.746 57.895 2.41 0.00 38.99 3.09
669 696 4.593206 TCTTCATGTCTCCTACACAACCTT 59.407 41.667 0.00 0.00 42.09 3.50
713 747 0.670546 ACTTGATCACCGCCAGAACG 60.671 55.000 0.00 0.00 0.00 3.95
717 751 0.442699 GATCACCGCCAGAACGAAAC 59.557 55.000 0.00 0.00 34.06 2.78
722 756 0.383860 CCGCCAGAACGAAACGAAAC 60.384 55.000 0.00 0.00 34.06 2.78
723 757 0.716926 CGCCAGAACGAAACGAAACG 60.717 55.000 0.00 0.00 34.06 3.60
724 758 0.578211 GCCAGAACGAAACGAAACGA 59.422 50.000 0.00 0.00 0.00 3.85
725 759 1.004715 GCCAGAACGAAACGAAACGAA 60.005 47.619 0.00 0.00 0.00 3.85
726 760 2.537328 GCCAGAACGAAACGAAACGAAA 60.537 45.455 0.00 0.00 0.00 3.46
727 761 3.847105 GCCAGAACGAAACGAAACGAAAT 60.847 43.478 0.00 0.00 0.00 2.17
728 762 4.276460 CCAGAACGAAACGAAACGAAATT 58.724 39.130 0.00 0.00 0.00 1.82
729 763 5.433855 CCAGAACGAAACGAAACGAAATTA 58.566 37.500 0.00 0.00 0.00 1.40
731 765 7.228840 CCAGAACGAAACGAAACGAAATTATA 58.771 34.615 0.00 0.00 0.00 0.98
738 772 8.921132 CGAAACGAAACGAAATTATAGCTAAAG 58.079 33.333 0.00 0.00 0.00 1.85
861 905 1.467920 GTAGGGCACGTACCACTACT 58.532 55.000 18.78 6.44 43.08 2.57
862 906 1.403323 GTAGGGCACGTACCACTACTC 59.597 57.143 18.78 0.00 43.08 2.59
888 935 9.840427 CTCTTAATTAACAACCATTTGAACGAT 57.160 29.630 0.00 0.00 36.48 3.73
889 936 9.834628 TCTTAATTAACAACCATTTGAACGATC 57.165 29.630 0.00 0.00 36.48 3.69
890 937 9.840427 CTTAATTAACAACCATTTGAACGATCT 57.160 29.630 0.00 0.00 36.48 2.75
894 941 5.613358 ACAACCATTTGAACGATCTTCTC 57.387 39.130 0.00 0.00 36.48 2.87
897 944 5.677319 ACCATTTGAACGATCTTCTCCTA 57.323 39.130 0.00 0.00 0.00 2.94
898 945 5.665459 ACCATTTGAACGATCTTCTCCTAG 58.335 41.667 0.00 0.00 0.00 3.02
936 986 4.082845 TCTACTTCTCTTCCCACACTCAG 58.917 47.826 0.00 0.00 0.00 3.35
937 987 1.346068 ACTTCTCTTCCCACACTCAGC 59.654 52.381 0.00 0.00 0.00 4.26
938 988 1.345741 CTTCTCTTCCCACACTCAGCA 59.654 52.381 0.00 0.00 0.00 4.41
941 991 1.554160 CTCTTCCCACACTCAGCATCT 59.446 52.381 0.00 0.00 0.00 2.90
942 992 1.980765 TCTTCCCACACTCAGCATCTT 59.019 47.619 0.00 0.00 0.00 2.40
945 995 0.325933 CCCACACTCAGCATCTTCCA 59.674 55.000 0.00 0.00 0.00 3.53
953 1024 2.233186 CTCAGCATCTTCCACAGAGACA 59.767 50.000 0.00 0.00 33.87 3.41
1032 1113 1.174783 AGGACATCTACGACGTGCTT 58.825 50.000 11.56 0.00 0.00 3.91
1482 1563 0.608130 TCTGGTACACGCTCATGCTT 59.392 50.000 0.00 0.00 36.97 3.91
1500 1581 2.094854 GCTTTTCCTCTTCGAGTACCGA 60.095 50.000 2.81 2.81 46.94 4.69
2107 2290 5.702670 TGTTGGATGATCTTGAGTTGACTTC 59.297 40.000 0.00 0.00 0.00 3.01
2131 2317 5.470098 CGGGATTCCTTTGGATAATGTGTAG 59.530 44.000 2.01 0.00 0.00 2.74
2132 2318 6.365520 GGGATTCCTTTGGATAATGTGTAGT 58.634 40.000 2.01 0.00 0.00 2.73
2201 2387 0.681733 ACATGTTCGTGTGGAGCTCT 59.318 50.000 14.64 0.00 0.00 4.09
2249 2441 3.722295 CGCAACGCCGTCAACCAT 61.722 61.111 0.00 0.00 0.00 3.55
2261 2453 4.329545 AACCATGCCGCGTCCACT 62.330 61.111 4.92 0.00 0.00 4.00
2343 2535 2.223317 ACGTTAAAAACACGCTGTTCCC 60.223 45.455 4.28 0.00 40.14 3.97
2363 2569 1.522668 CCGTCCAAATCAGAGTTGCA 58.477 50.000 5.01 0.00 0.00 4.08
2394 2606 1.209261 ACACCATGACACACACTGACA 59.791 47.619 0.00 0.00 0.00 3.58
2397 2629 2.698274 ACCATGACACACACTGACACTA 59.302 45.455 0.00 0.00 0.00 2.74
2769 3048 2.684881 GCATCCGTCCATCAATTCACTT 59.315 45.455 0.00 0.00 0.00 3.16
2772 3068 3.081061 TCCGTCCATCAATTCACTTTGG 58.919 45.455 0.00 0.00 0.00 3.28
2800 3099 3.244181 TGCATCAGAACTCACAAGTGCTA 60.244 43.478 0.00 0.00 39.61 3.49
2803 3102 2.630098 TCAGAACTCACAAGTGCTAGCT 59.370 45.455 17.23 0.00 39.61 3.32
2804 3103 3.070159 TCAGAACTCACAAGTGCTAGCTT 59.930 43.478 17.23 0.00 39.61 3.74
2805 3104 3.186001 CAGAACTCACAAGTGCTAGCTTG 59.814 47.826 17.23 15.12 39.61 4.01
2860 3164 5.525378 GGATTCGAAGCTAGATTGACATTGT 59.475 40.000 13.83 0.00 0.00 2.71
2863 3167 4.093408 TCGAAGCTAGATTGACATTGTTGC 59.907 41.667 0.00 0.00 0.00 4.17
3131 3436 2.488937 GCACACATGACATGATGACCAA 59.511 45.455 22.19 0.00 0.00 3.67
3172 3495 2.202557 TACGGCTGATGCACGACG 60.203 61.111 0.00 6.22 41.91 5.12
3224 3550 7.444629 AATGTCTGCATCCATATCATTGTAC 57.555 36.000 0.00 0.00 33.50 2.90
3225 3551 6.178607 TGTCTGCATCCATATCATTGTACT 57.821 37.500 0.00 0.00 0.00 2.73
3226 3552 7.301868 TGTCTGCATCCATATCATTGTACTA 57.698 36.000 0.00 0.00 0.00 1.82
3334 3672 5.530171 GTCTCTAATCACATTGATGGTGCAT 59.470 40.000 0.00 0.00 37.15 3.96
3385 3725 7.981102 ATGTTAAGTAACCAAACTCCTCTTC 57.019 36.000 0.00 0.00 35.37 2.87
3386 3726 6.891388 TGTTAAGTAACCAAACTCCTCTTCA 58.109 36.000 0.00 0.00 35.37 3.02
3499 3842 2.233922 AGCTTAGGTACAGCGTTGACAT 59.766 45.455 6.16 0.33 42.55 3.06
3532 3876 7.661437 TGTCTATTCATAACAGATTATGTGCCC 59.339 37.037 6.87 0.00 45.47 5.36
3573 3918 3.128068 CCAAGAAATGCTAACGGTAACCC 59.872 47.826 0.00 0.00 0.00 4.11
3626 3971 6.240894 TCTGCAACCAAAGATTATCTCTTGT 58.759 36.000 0.00 0.00 43.60 3.16
3647 3992 0.430110 GAAAGTCTGTCGCGACGTTC 59.570 55.000 31.88 23.47 42.19 3.95
3750 4096 3.134442 ACATGTTGCCATTGTTCAGGTTT 59.866 39.130 0.00 0.00 0.00 3.27
3994 4341 6.388435 AGCTATTGCATCCTCAATCTTTTC 57.612 37.500 1.12 0.00 42.74 2.29
4087 4434 5.404466 TCAGGGTTATTTTTGGAATGCTG 57.596 39.130 0.00 0.00 0.00 4.41
4165 4512 3.403038 TCTTGAAGAACTAAGGCTGCAC 58.597 45.455 0.50 0.00 0.00 4.57
4199 4546 8.843262 GGTAGGAAGAAGTAGAATTCTAGAGAC 58.157 40.741 15.58 6.70 38.59 3.36
4200 4547 7.562454 AGGAAGAAGTAGAATTCTAGAGACG 57.438 40.000 15.58 0.00 38.59 4.18
4206 4553 9.349713 AGAAGTAGAATTCTAGAGACGAATGAT 57.650 33.333 15.58 0.00 37.76 2.45
4254 4606 4.498894 ACCTGAAGATGCATGAGATGAA 57.501 40.909 2.46 0.00 0.00 2.57
4533 4918 6.401047 TCTCACCCTGGATAAACTAATACG 57.599 41.667 0.00 0.00 0.00 3.06
4628 5013 2.235650 CTGCCTGGACAGATCTCTGAAA 59.764 50.000 13.94 0.00 46.59 2.69
4630 5015 2.235898 GCCTGGACAGATCTCTGAAACT 59.764 50.000 13.94 0.00 46.59 2.66
4631 5016 3.678529 GCCTGGACAGATCTCTGAAACTC 60.679 52.174 13.94 1.18 46.59 3.01
4632 5017 3.768757 CCTGGACAGATCTCTGAAACTCT 59.231 47.826 13.94 0.00 46.59 3.24
4633 5018 4.381825 CCTGGACAGATCTCTGAAACTCTG 60.382 50.000 13.94 8.44 46.59 3.35
4636 5021 5.305386 TGGACAGATCTCTGAAACTCTGAAA 59.695 40.000 13.94 1.82 46.59 2.69
4637 5022 6.013898 TGGACAGATCTCTGAAACTCTGAAAT 60.014 38.462 13.94 0.00 46.59 2.17
4638 5023 6.534793 GGACAGATCTCTGAAACTCTGAAATC 59.465 42.308 13.94 0.00 46.59 2.17
4641 5026 7.603404 ACAGATCTCTGAAACTCTGAAATCTTG 59.397 37.037 13.94 0.00 46.59 3.02
4642 5027 6.594937 AGATCTCTGAAACTCTGAAATCTTGC 59.405 38.462 0.00 0.00 30.96 4.01
4643 5028 5.614308 TCTCTGAAACTCTGAAATCTTGCA 58.386 37.500 0.00 0.00 0.00 4.08
4644 5029 5.468072 TCTCTGAAACTCTGAAATCTTGCAC 59.532 40.000 0.00 0.00 0.00 4.57
4645 5030 5.125356 TCTGAAACTCTGAAATCTTGCACA 58.875 37.500 0.00 0.00 0.00 4.57
4646 5031 5.237996 TCTGAAACTCTGAAATCTTGCACAG 59.762 40.000 0.00 0.00 0.00 3.66
4647 5032 5.125356 TGAAACTCTGAAATCTTGCACAGA 58.875 37.500 2.84 2.84 37.71 3.41
4648 5033 5.008019 TGAAACTCTGAAATCTTGCACAGAC 59.992 40.000 0.00 0.00 35.85 3.51
4650 5035 4.454678 ACTCTGAAATCTTGCACAGACAA 58.545 39.130 0.00 0.00 35.85 3.18
4651 5036 4.883585 ACTCTGAAATCTTGCACAGACAAA 59.116 37.500 0.00 0.00 35.85 2.83
4845 5295 1.467920 CATGAAACAAGGGGGAGAGC 58.532 55.000 0.00 0.00 0.00 4.09
4849 5299 2.470938 AAACAAGGGGGAGAGCGAGC 62.471 60.000 0.00 0.00 0.00 5.03
4917 5371 2.038952 TGTCTGCTGCCTAATGACAGTT 59.961 45.455 0.00 0.00 36.26 3.16
4970 5424 3.871594 GTCAAATGTTAGCTAGATGCCGT 59.128 43.478 0.00 0.00 44.23 5.68
5057 7229 2.501723 TGAAACCTGATGGCCTAGAGTC 59.498 50.000 3.32 0.00 36.63 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.394115 GGTGTTTTGTTTTCTCAGGTCACAT 60.394 40.000 0.00 0.00 0.00 3.21
1 2 4.082463 GGTGTTTTGTTTTCTCAGGTCACA 60.082 41.667 0.00 0.00 0.00 3.58
2 3 4.421058 GGTGTTTTGTTTTCTCAGGTCAC 58.579 43.478 0.00 0.00 0.00 3.67
3 4 3.127895 CGGTGTTTTGTTTTCTCAGGTCA 59.872 43.478 0.00 0.00 0.00 4.02
4 5 3.375922 TCGGTGTTTTGTTTTCTCAGGTC 59.624 43.478 0.00 0.00 0.00 3.85
5 6 3.349022 TCGGTGTTTTGTTTTCTCAGGT 58.651 40.909 0.00 0.00 0.00 4.00
6 7 4.568152 ATCGGTGTTTTGTTTTCTCAGG 57.432 40.909 0.00 0.00 0.00 3.86
7 8 6.017440 TCCTTATCGGTGTTTTGTTTTCTCAG 60.017 38.462 0.00 0.00 0.00 3.35
8 9 5.823570 TCCTTATCGGTGTTTTGTTTTCTCA 59.176 36.000 0.00 0.00 0.00 3.27
9 10 6.308371 TCCTTATCGGTGTTTTGTTTTCTC 57.692 37.500 0.00 0.00 0.00 2.87
10 11 6.460537 GGTTCCTTATCGGTGTTTTGTTTTCT 60.461 38.462 0.00 0.00 0.00 2.52
11 12 5.688621 GGTTCCTTATCGGTGTTTTGTTTTC 59.311 40.000 0.00 0.00 0.00 2.29
12 13 5.593968 GGTTCCTTATCGGTGTTTTGTTTT 58.406 37.500 0.00 0.00 0.00 2.43
13 14 4.261280 CGGTTCCTTATCGGTGTTTTGTTT 60.261 41.667 0.00 0.00 0.00 2.83
14 15 3.251487 CGGTTCCTTATCGGTGTTTTGTT 59.749 43.478 0.00 0.00 0.00 2.83
15 16 2.809696 CGGTTCCTTATCGGTGTTTTGT 59.190 45.455 0.00 0.00 0.00 2.83
16 17 2.809696 ACGGTTCCTTATCGGTGTTTTG 59.190 45.455 0.00 0.00 0.00 2.44
17 18 3.130280 ACGGTTCCTTATCGGTGTTTT 57.870 42.857 0.00 0.00 0.00 2.43
18 19 2.845363 ACGGTTCCTTATCGGTGTTT 57.155 45.000 0.00 0.00 0.00 2.83
19 20 2.167075 CCTACGGTTCCTTATCGGTGTT 59.833 50.000 0.00 0.00 0.00 3.32
20 21 1.753073 CCTACGGTTCCTTATCGGTGT 59.247 52.381 0.00 0.00 0.00 4.16
21 22 2.026641 TCCTACGGTTCCTTATCGGTG 58.973 52.381 0.00 0.00 0.00 4.94
22 23 2.305009 CTCCTACGGTTCCTTATCGGT 58.695 52.381 0.00 0.00 0.00 4.69
23 24 1.000496 GCTCCTACGGTTCCTTATCGG 60.000 57.143 0.00 0.00 0.00 4.18
24 25 1.955080 AGCTCCTACGGTTCCTTATCG 59.045 52.381 0.00 0.00 0.00 2.92
25 26 2.296752 GGAGCTCCTACGGTTCCTTATC 59.703 54.545 26.25 0.00 0.00 1.75
26 27 2.317973 GGAGCTCCTACGGTTCCTTAT 58.682 52.381 26.25 0.00 0.00 1.73
27 28 1.772836 GGAGCTCCTACGGTTCCTTA 58.227 55.000 26.25 0.00 0.00 2.69
28 29 1.321074 CGGAGCTCCTACGGTTCCTT 61.321 60.000 29.73 0.00 33.64 3.36
29 30 1.753463 CGGAGCTCCTACGGTTCCT 60.753 63.158 29.73 0.00 33.64 3.36
30 31 1.318158 TTCGGAGCTCCTACGGTTCC 61.318 60.000 29.73 1.67 38.51 3.62
31 32 0.100861 CTTCGGAGCTCCTACGGTTC 59.899 60.000 29.73 1.58 38.51 3.62
32 33 0.323178 TCTTCGGAGCTCCTACGGTT 60.323 55.000 29.73 0.00 38.51 4.44
33 34 0.106619 ATCTTCGGAGCTCCTACGGT 60.107 55.000 29.73 11.10 38.51 4.83
34 35 0.594110 GATCTTCGGAGCTCCTACGG 59.406 60.000 29.73 14.77 38.51 4.02
35 36 1.309950 TGATCTTCGGAGCTCCTACG 58.690 55.000 29.73 17.29 39.48 3.51
36 37 2.887783 TCATGATCTTCGGAGCTCCTAC 59.112 50.000 29.73 14.21 0.00 3.18
37 38 3.229697 TCATGATCTTCGGAGCTCCTA 57.770 47.619 29.73 17.64 0.00 2.94
38 39 2.079170 TCATGATCTTCGGAGCTCCT 57.921 50.000 29.73 11.44 0.00 3.69
39 40 2.898729 TTCATGATCTTCGGAGCTCC 57.101 50.000 23.79 23.79 0.00 4.70
40 41 4.033817 CAGTTTTCATGATCTTCGGAGCTC 59.966 45.833 4.71 4.71 0.00 4.09
41 42 3.937706 CAGTTTTCATGATCTTCGGAGCT 59.062 43.478 0.00 0.00 0.00 4.09
42 43 3.064545 CCAGTTTTCATGATCTTCGGAGC 59.935 47.826 0.00 0.00 0.00 4.70
43 44 3.064545 GCCAGTTTTCATGATCTTCGGAG 59.935 47.826 0.00 0.00 0.00 4.63
44 45 3.009723 GCCAGTTTTCATGATCTTCGGA 58.990 45.455 0.00 0.00 0.00 4.55
45 46 2.098117 GGCCAGTTTTCATGATCTTCGG 59.902 50.000 0.00 0.00 0.00 4.30
46 47 2.223112 CGGCCAGTTTTCATGATCTTCG 60.223 50.000 2.24 0.00 0.00 3.79
47 48 3.009723 TCGGCCAGTTTTCATGATCTTC 58.990 45.455 2.24 0.00 0.00 2.87
48 49 3.071874 TCGGCCAGTTTTCATGATCTT 57.928 42.857 2.24 0.00 0.00 2.40
49 50 2.787473 TCGGCCAGTTTTCATGATCT 57.213 45.000 2.24 0.00 0.00 2.75
50 51 3.243201 GGATTCGGCCAGTTTTCATGATC 60.243 47.826 2.24 0.00 0.00 2.92
51 52 2.689983 GGATTCGGCCAGTTTTCATGAT 59.310 45.455 2.24 0.00 0.00 2.45
52 53 2.091541 GGATTCGGCCAGTTTTCATGA 58.908 47.619 2.24 0.00 0.00 3.07
53 54 1.818060 TGGATTCGGCCAGTTTTCATG 59.182 47.619 2.24 0.00 33.10 3.07
54 55 2.214376 TGGATTCGGCCAGTTTTCAT 57.786 45.000 2.24 0.00 33.10 2.57
55 56 3.735704 TGGATTCGGCCAGTTTTCA 57.264 47.368 2.24 0.00 33.10 2.69
71 72 0.107703 TTTCTAGTGCATCCGCCTGG 60.108 55.000 0.00 0.00 37.32 4.45
72 73 1.009829 GTTTCTAGTGCATCCGCCTG 58.990 55.000 0.00 0.00 37.32 4.85
73 74 0.107654 GGTTTCTAGTGCATCCGCCT 60.108 55.000 0.00 0.00 37.32 5.52
74 75 0.107654 AGGTTTCTAGTGCATCCGCC 60.108 55.000 0.00 0.00 37.32 6.13
75 76 2.596904 TAGGTTTCTAGTGCATCCGC 57.403 50.000 0.00 0.00 39.24 5.54
76 77 3.306166 CGTTTAGGTTTCTAGTGCATCCG 59.694 47.826 0.00 0.00 0.00 4.18
77 78 3.621715 CCGTTTAGGTTTCTAGTGCATCC 59.378 47.826 0.00 0.00 34.51 3.51
78 79 4.329256 GTCCGTTTAGGTTTCTAGTGCATC 59.671 45.833 0.00 0.00 41.99 3.91
79 80 4.251268 GTCCGTTTAGGTTTCTAGTGCAT 58.749 43.478 0.00 0.00 41.99 3.96
80 81 3.555586 GGTCCGTTTAGGTTTCTAGTGCA 60.556 47.826 0.00 0.00 41.99 4.57
81 82 2.998670 GGTCCGTTTAGGTTTCTAGTGC 59.001 50.000 0.00 0.00 41.99 4.40
82 83 4.021719 TCAGGTCCGTTTAGGTTTCTAGTG 60.022 45.833 0.00 0.00 41.99 2.74
83 84 4.154942 TCAGGTCCGTTTAGGTTTCTAGT 58.845 43.478 0.00 0.00 41.99 2.57
84 85 4.796038 TCAGGTCCGTTTAGGTTTCTAG 57.204 45.455 0.00 0.00 41.99 2.43
85 86 4.773674 TGATCAGGTCCGTTTAGGTTTCTA 59.226 41.667 0.00 0.00 41.99 2.10
86 87 3.581332 TGATCAGGTCCGTTTAGGTTTCT 59.419 43.478 0.00 0.00 41.99 2.52
87 88 3.683340 GTGATCAGGTCCGTTTAGGTTTC 59.317 47.826 0.00 0.00 41.99 2.78
88 89 3.671716 GTGATCAGGTCCGTTTAGGTTT 58.328 45.455 0.00 0.00 41.99 3.27
89 90 2.353406 CGTGATCAGGTCCGTTTAGGTT 60.353 50.000 7.25 0.00 41.99 3.50
90 91 1.203994 CGTGATCAGGTCCGTTTAGGT 59.796 52.381 7.25 0.00 41.99 3.08
91 92 1.475280 TCGTGATCAGGTCCGTTTAGG 59.525 52.381 14.67 0.00 42.97 2.69
92 93 2.933495 TCGTGATCAGGTCCGTTTAG 57.067 50.000 14.67 0.00 0.00 1.85
93 94 3.256383 TCTTTCGTGATCAGGTCCGTTTA 59.744 43.478 14.67 0.00 0.00 2.01
94 95 2.036733 TCTTTCGTGATCAGGTCCGTTT 59.963 45.455 14.67 0.00 0.00 3.60
95 96 1.616865 TCTTTCGTGATCAGGTCCGTT 59.383 47.619 14.67 0.00 0.00 4.44
96 97 1.067776 GTCTTTCGTGATCAGGTCCGT 60.068 52.381 14.67 0.00 0.00 4.69
97 98 1.630148 GTCTTTCGTGATCAGGTCCG 58.370 55.000 14.67 6.22 0.00 4.79
98 99 1.405661 GGGTCTTTCGTGATCAGGTCC 60.406 57.143 14.67 10.22 0.00 4.46
99 100 1.736032 CGGGTCTTTCGTGATCAGGTC 60.736 57.143 14.67 0.00 0.00 3.85
100 101 0.246635 CGGGTCTTTCGTGATCAGGT 59.753 55.000 14.67 0.00 0.00 4.00
101 102 1.084370 GCGGGTCTTTCGTGATCAGG 61.084 60.000 9.16 9.16 0.00 3.86
102 103 1.084370 GGCGGGTCTTTCGTGATCAG 61.084 60.000 0.00 0.00 0.00 2.90
103 104 1.079405 GGCGGGTCTTTCGTGATCA 60.079 57.895 0.00 0.00 0.00 2.92
104 105 2.165301 CGGCGGGTCTTTCGTGATC 61.165 63.158 0.00 0.00 0.00 2.92
105 106 2.125673 CGGCGGGTCTTTCGTGAT 60.126 61.111 0.00 0.00 0.00 3.06
106 107 4.367023 CCGGCGGGTCTTTCGTGA 62.367 66.667 20.56 0.00 0.00 4.35
107 108 4.367023 TCCGGCGGGTCTTTCGTG 62.367 66.667 27.98 0.00 33.83 4.35
108 109 4.065281 CTCCGGCGGGTCTTTCGT 62.065 66.667 27.98 0.00 33.83 3.85
109 110 3.755628 TCTCCGGCGGGTCTTTCG 61.756 66.667 27.98 6.14 33.83 3.46
110 111 2.125633 GTCTCCGGCGGGTCTTTC 60.126 66.667 27.98 7.36 33.83 2.62
111 112 2.291043 ATGTCTCCGGCGGGTCTTT 61.291 57.895 27.98 5.90 33.83 2.52
112 113 2.683933 ATGTCTCCGGCGGGTCTT 60.684 61.111 27.98 11.67 33.83 3.01
113 114 3.461773 CATGTCTCCGGCGGGTCT 61.462 66.667 27.98 3.72 33.83 3.85
114 115 4.530857 CCATGTCTCCGGCGGGTC 62.531 72.222 27.98 16.58 33.83 4.46
116 117 4.096003 AACCATGTCTCCGGCGGG 62.096 66.667 27.98 17.02 0.00 6.13
117 118 2.511600 GAACCATGTCTCCGGCGG 60.512 66.667 22.51 22.51 0.00 6.13
118 119 2.511600 GGAACCATGTCTCCGGCG 60.512 66.667 0.00 0.00 0.00 6.46
119 120 1.745489 GTGGAACCATGTCTCCGGC 60.745 63.158 0.00 0.00 34.14 6.13
120 121 0.036164 TTGTGGAACCATGTCTCCGG 59.964 55.000 0.00 0.00 34.36 5.14
121 122 1.442769 CTTGTGGAACCATGTCTCCG 58.557 55.000 0.00 0.00 34.36 4.63
122 123 1.168714 GCTTGTGGAACCATGTCTCC 58.831 55.000 0.00 3.80 34.36 3.71
123 124 1.168714 GGCTTGTGGAACCATGTCTC 58.831 55.000 0.00 0.00 34.36 3.36
124 125 0.251341 GGGCTTGTGGAACCATGTCT 60.251 55.000 0.00 0.00 34.36 3.41
125 126 0.251341 AGGGCTTGTGGAACCATGTC 60.251 55.000 0.00 0.00 34.36 3.06
126 127 0.251341 GAGGGCTTGTGGAACCATGT 60.251 55.000 0.00 0.00 34.36 3.21
127 128 0.967380 GGAGGGCTTGTGGAACCATG 60.967 60.000 0.00 0.00 34.36 3.66
128 129 1.142688 AGGAGGGCTTGTGGAACCAT 61.143 55.000 0.00 0.00 34.36 3.55
129 130 1.774217 AGGAGGGCTTGTGGAACCA 60.774 57.895 0.00 0.00 34.36 3.67
130 131 1.002011 GAGGAGGGCTTGTGGAACC 60.002 63.158 0.00 0.00 34.36 3.62
131 132 1.002011 GGAGGAGGGCTTGTGGAAC 60.002 63.158 0.00 0.00 37.35 3.62
132 133 2.592993 CGGAGGAGGGCTTGTGGAA 61.593 63.158 0.00 0.00 0.00 3.53
133 134 3.003173 CGGAGGAGGGCTTGTGGA 61.003 66.667 0.00 0.00 0.00 4.02
146 147 4.389576 GTGTGCTTTGCGCCGGAG 62.390 66.667 5.05 1.55 38.39 4.63
149 150 4.263209 TTGGTGTGCTTTGCGCCG 62.263 61.111 4.18 0.00 38.39 6.46
150 151 2.658268 GTTGGTGTGCTTTGCGCC 60.658 61.111 4.18 0.00 38.39 6.53
151 152 0.039617 TATGTTGGTGTGCTTTGCGC 60.040 50.000 0.00 0.00 39.75 6.09
152 153 2.050691 GTTATGTTGGTGTGCTTTGCG 58.949 47.619 0.00 0.00 0.00 4.85
153 154 2.050691 CGTTATGTTGGTGTGCTTTGC 58.949 47.619 0.00 0.00 0.00 3.68
154 155 2.292016 TCCGTTATGTTGGTGTGCTTTG 59.708 45.455 0.00 0.00 0.00 2.77
155 156 2.577700 TCCGTTATGTTGGTGTGCTTT 58.422 42.857 0.00 0.00 0.00 3.51
156 157 2.264005 TCCGTTATGTTGGTGTGCTT 57.736 45.000 0.00 0.00 0.00 3.91
157 158 2.264005 TTCCGTTATGTTGGTGTGCT 57.736 45.000 0.00 0.00 0.00 4.40
158 159 3.569250 ATTTCCGTTATGTTGGTGTGC 57.431 42.857 0.00 0.00 0.00 4.57
159 160 4.233789 CCAATTTCCGTTATGTTGGTGTG 58.766 43.478 0.00 0.00 35.68 3.82
160 161 3.257127 CCCAATTTCCGTTATGTTGGTGT 59.743 43.478 0.00 0.00 38.07 4.16
161 162 3.367910 CCCCAATTTCCGTTATGTTGGTG 60.368 47.826 0.00 0.00 38.07 4.17
162 163 2.829120 CCCCAATTTCCGTTATGTTGGT 59.171 45.455 0.00 0.00 38.07 3.67
163 164 2.167487 CCCCCAATTTCCGTTATGTTGG 59.833 50.000 0.00 0.00 39.16 3.77
164 165 3.518634 CCCCCAATTTCCGTTATGTTG 57.481 47.619 0.00 0.00 0.00 3.33
194 195 2.764010 GGTGTTGGAATAATGTTCCCCC 59.236 50.000 6.31 0.00 37.79 5.40
195 196 2.425668 CGGTGTTGGAATAATGTTCCCC 59.574 50.000 6.31 0.00 37.79 4.81
196 197 2.159296 GCGGTGTTGGAATAATGTTCCC 60.159 50.000 6.31 0.00 37.79 3.97
197 198 2.159296 GGCGGTGTTGGAATAATGTTCC 60.159 50.000 1.49 1.49 39.03 3.62
198 199 2.490115 TGGCGGTGTTGGAATAATGTTC 59.510 45.455 0.00 0.00 0.00 3.18
199 200 2.520069 TGGCGGTGTTGGAATAATGTT 58.480 42.857 0.00 0.00 0.00 2.71
200 201 2.208132 TGGCGGTGTTGGAATAATGT 57.792 45.000 0.00 0.00 0.00 2.71
201 202 2.951642 AGATGGCGGTGTTGGAATAATG 59.048 45.455 0.00 0.00 0.00 1.90
202 203 3.117888 AGAGATGGCGGTGTTGGAATAAT 60.118 43.478 0.00 0.00 0.00 1.28
203 204 2.238646 AGAGATGGCGGTGTTGGAATAA 59.761 45.455 0.00 0.00 0.00 1.40
204 205 1.837439 AGAGATGGCGGTGTTGGAATA 59.163 47.619 0.00 0.00 0.00 1.75
205 206 0.620556 AGAGATGGCGGTGTTGGAAT 59.379 50.000 0.00 0.00 0.00 3.01
206 207 0.036388 GAGAGATGGCGGTGTTGGAA 60.036 55.000 0.00 0.00 0.00 3.53
207 208 1.596934 GAGAGATGGCGGTGTTGGA 59.403 57.895 0.00 0.00 0.00 3.53
208 209 1.450312 GGAGAGATGGCGGTGTTGG 60.450 63.158 0.00 0.00 0.00 3.77
209 210 1.811266 CGGAGAGATGGCGGTGTTG 60.811 63.158 0.00 0.00 0.00 3.33
210 211 2.579201 CGGAGAGATGGCGGTGTT 59.421 61.111 0.00 0.00 0.00 3.32
211 212 4.148825 GCGGAGAGATGGCGGTGT 62.149 66.667 0.00 0.00 0.00 4.16
212 213 4.899239 GGCGGAGAGATGGCGGTG 62.899 72.222 0.00 0.00 0.00 4.94
214 215 4.292178 GAGGCGGAGAGATGGCGG 62.292 72.222 0.00 0.00 35.52 6.13
215 216 2.578163 TTTGAGGCGGAGAGATGGCG 62.578 60.000 0.00 0.00 35.52 5.69
216 217 0.392998 TTTTGAGGCGGAGAGATGGC 60.393 55.000 0.00 0.00 0.00 4.40
217 218 1.339055 TGTTTTGAGGCGGAGAGATGG 60.339 52.381 0.00 0.00 0.00 3.51
218 219 2.099141 TGTTTTGAGGCGGAGAGATG 57.901 50.000 0.00 0.00 0.00 2.90
219 220 2.859165 TTGTTTTGAGGCGGAGAGAT 57.141 45.000 0.00 0.00 0.00 2.75
220 221 2.104111 TCTTTGTTTTGAGGCGGAGAGA 59.896 45.455 0.00 0.00 0.00 3.10
221 222 2.224314 GTCTTTGTTTTGAGGCGGAGAG 59.776 50.000 0.00 0.00 0.00 3.20
222 223 2.218603 GTCTTTGTTTTGAGGCGGAGA 58.781 47.619 0.00 0.00 0.00 3.71
223 224 1.266989 GGTCTTTGTTTTGAGGCGGAG 59.733 52.381 0.00 0.00 0.00 4.63
224 225 1.314730 GGTCTTTGTTTTGAGGCGGA 58.685 50.000 0.00 0.00 0.00 5.54
225 226 1.028905 TGGTCTTTGTTTTGAGGCGG 58.971 50.000 0.00 0.00 0.00 6.13
226 227 2.357637 TCTTGGTCTTTGTTTTGAGGCG 59.642 45.455 0.00 0.00 0.00 5.52
227 228 3.490933 GGTCTTGGTCTTTGTTTTGAGGC 60.491 47.826 0.00 0.00 0.00 4.70
228 229 3.068165 GGGTCTTGGTCTTTGTTTTGAGG 59.932 47.826 0.00 0.00 0.00 3.86
229 230 3.954258 AGGGTCTTGGTCTTTGTTTTGAG 59.046 43.478 0.00 0.00 0.00 3.02
230 231 3.976015 AGGGTCTTGGTCTTTGTTTTGA 58.024 40.909 0.00 0.00 0.00 2.69
231 232 4.736126 AAGGGTCTTGGTCTTTGTTTTG 57.264 40.909 0.00 0.00 0.00 2.44
232 233 6.382859 ACAATAAGGGTCTTGGTCTTTGTTTT 59.617 34.615 0.00 0.00 0.00 2.43
233 234 5.897250 ACAATAAGGGTCTTGGTCTTTGTTT 59.103 36.000 0.00 0.00 0.00 2.83
234 235 5.454966 ACAATAAGGGTCTTGGTCTTTGTT 58.545 37.500 0.00 0.00 0.00 2.83
235 236 5.061721 ACAATAAGGGTCTTGGTCTTTGT 57.938 39.130 0.00 0.00 0.00 2.83
236 237 5.534654 TCAACAATAAGGGTCTTGGTCTTTG 59.465 40.000 0.00 0.00 0.00 2.77
237 238 5.701224 TCAACAATAAGGGTCTTGGTCTTT 58.299 37.500 0.00 0.00 0.00 2.52
238 239 5.319043 TCAACAATAAGGGTCTTGGTCTT 57.681 39.130 0.00 0.00 0.00 3.01
239 240 4.993705 TCAACAATAAGGGTCTTGGTCT 57.006 40.909 0.00 0.00 0.00 3.85
240 241 5.010282 ACATCAACAATAAGGGTCTTGGTC 58.990 41.667 0.00 0.00 0.00 4.02
241 242 4.998051 ACATCAACAATAAGGGTCTTGGT 58.002 39.130 0.00 0.00 0.00 3.67
242 243 5.064707 CGTACATCAACAATAAGGGTCTTGG 59.935 44.000 0.00 0.00 0.00 3.61
243 244 5.872617 TCGTACATCAACAATAAGGGTCTTG 59.127 40.000 0.00 0.00 0.00 3.02
244 245 5.873164 GTCGTACATCAACAATAAGGGTCTT 59.127 40.000 0.00 0.00 0.00 3.01
245 246 5.046878 TGTCGTACATCAACAATAAGGGTCT 60.047 40.000 0.00 0.00 0.00 3.85
246 247 5.172934 TGTCGTACATCAACAATAAGGGTC 58.827 41.667 0.00 0.00 0.00 4.46
247 248 5.046878 TCTGTCGTACATCAACAATAAGGGT 60.047 40.000 0.00 0.00 0.00 4.34
248 249 5.416083 TCTGTCGTACATCAACAATAAGGG 58.584 41.667 0.00 0.00 0.00 3.95
249 250 8.703336 CATATCTGTCGTACATCAACAATAAGG 58.297 37.037 0.00 0.00 0.00 2.69
250 251 8.703336 CCATATCTGTCGTACATCAACAATAAG 58.297 37.037 0.00 0.00 0.00 1.73
251 252 7.655732 CCCATATCTGTCGTACATCAACAATAA 59.344 37.037 0.00 0.00 0.00 1.40
252 253 7.151976 CCCATATCTGTCGTACATCAACAATA 58.848 38.462 0.00 0.00 0.00 1.90
253 254 5.991606 CCCATATCTGTCGTACATCAACAAT 59.008 40.000 0.00 0.00 0.00 2.71
254 255 5.105106 ACCCATATCTGTCGTACATCAACAA 60.105 40.000 0.00 0.00 0.00 2.83
255 256 4.404394 ACCCATATCTGTCGTACATCAACA 59.596 41.667 0.00 0.00 0.00 3.33
256 257 4.945246 ACCCATATCTGTCGTACATCAAC 58.055 43.478 0.00 0.00 0.00 3.18
257 258 4.893524 AGACCCATATCTGTCGTACATCAA 59.106 41.667 0.00 0.00 36.61 2.57
258 259 4.278419 CAGACCCATATCTGTCGTACATCA 59.722 45.833 0.00 0.00 41.12 3.07
259 260 4.519350 TCAGACCCATATCTGTCGTACATC 59.481 45.833 2.90 0.00 45.41 3.06
260 261 4.470602 TCAGACCCATATCTGTCGTACAT 58.529 43.478 2.90 0.00 45.41 2.29
261 262 3.893521 TCAGACCCATATCTGTCGTACA 58.106 45.455 2.90 0.00 45.41 2.90
262 263 6.457122 CGATATCAGACCCATATCTGTCGTAC 60.457 46.154 3.12 0.00 45.41 3.67
263 264 5.585047 CGATATCAGACCCATATCTGTCGTA 59.415 44.000 3.12 0.00 45.41 3.43
264 265 4.396478 CGATATCAGACCCATATCTGTCGT 59.604 45.833 3.12 0.00 45.41 4.34
265 266 4.636206 TCGATATCAGACCCATATCTGTCG 59.364 45.833 3.12 5.55 45.41 4.35
266 267 5.449862 GCTCGATATCAGACCCATATCTGTC 60.450 48.000 3.12 0.00 45.41 3.51
267 268 4.400884 GCTCGATATCAGACCCATATCTGT 59.599 45.833 3.12 0.00 45.41 3.41
268 269 4.644234 AGCTCGATATCAGACCCATATCTG 59.356 45.833 3.12 0.00 46.40 2.90
269 270 4.865905 AGCTCGATATCAGACCCATATCT 58.134 43.478 3.12 0.00 32.89 1.98
270 271 4.642437 TGAGCTCGATATCAGACCCATATC 59.358 45.833 9.64 0.00 32.06 1.63
271 272 4.400884 GTGAGCTCGATATCAGACCCATAT 59.599 45.833 9.64 0.00 0.00 1.78
272 273 3.759086 GTGAGCTCGATATCAGACCCATA 59.241 47.826 9.64 0.00 0.00 2.74
273 274 2.560542 GTGAGCTCGATATCAGACCCAT 59.439 50.000 9.64 0.00 0.00 4.00
274 275 1.957177 GTGAGCTCGATATCAGACCCA 59.043 52.381 9.64 0.00 0.00 4.51
275 276 1.271102 GGTGAGCTCGATATCAGACCC 59.729 57.143 9.64 0.00 0.00 4.46
276 277 1.068885 CGGTGAGCTCGATATCAGACC 60.069 57.143 9.64 7.36 0.00 3.85
277 278 1.664588 GCGGTGAGCTCGATATCAGAC 60.665 57.143 9.64 0.00 44.04 3.51
278 279 0.593618 GCGGTGAGCTCGATATCAGA 59.406 55.000 9.64 0.66 44.04 3.27
279 280 3.099524 GCGGTGAGCTCGATATCAG 57.900 57.895 9.64 1.04 44.04 2.90
290 291 2.125753 GCTCTGGACAGCGGTGAG 60.126 66.667 23.44 8.63 0.00 3.51
291 292 3.695606 GGCTCTGGACAGCGGTGA 61.696 66.667 23.44 0.00 40.68 4.02
292 293 3.320879 ATGGCTCTGGACAGCGGTG 62.321 63.158 14.13 14.13 40.68 4.94
293 294 3.005539 ATGGCTCTGGACAGCGGT 61.006 61.111 0.00 0.00 40.68 5.68
294 295 2.513204 CATGGCTCTGGACAGCGG 60.513 66.667 0.00 0.00 40.68 5.52
295 296 1.078918 TTCATGGCTCTGGACAGCG 60.079 57.895 0.00 0.00 40.68 5.18
296 297 1.028868 GGTTCATGGCTCTGGACAGC 61.029 60.000 0.00 0.00 38.84 4.40
297 298 0.742281 CGGTTCATGGCTCTGGACAG 60.742 60.000 0.00 0.00 31.90 3.51
298 299 1.191489 TCGGTTCATGGCTCTGGACA 61.191 55.000 0.00 0.00 33.53 4.02
299 300 0.741221 GTCGGTTCATGGCTCTGGAC 60.741 60.000 0.00 0.00 0.00 4.02
300 301 1.191489 TGTCGGTTCATGGCTCTGGA 61.191 55.000 0.00 0.00 0.00 3.86
301 302 1.021390 GTGTCGGTTCATGGCTCTGG 61.021 60.000 0.00 0.00 0.00 3.86
302 303 1.354337 CGTGTCGGTTCATGGCTCTG 61.354 60.000 0.00 0.00 0.00 3.35
303 304 1.079819 CGTGTCGGTTCATGGCTCT 60.080 57.895 0.00 0.00 0.00 4.09
304 305 2.740714 GCGTGTCGGTTCATGGCTC 61.741 63.158 0.00 0.00 0.00 4.70
305 306 2.742372 GCGTGTCGGTTCATGGCT 60.742 61.111 0.00 0.00 0.00 4.75
306 307 2.740714 GAGCGTGTCGGTTCATGGC 61.741 63.158 0.00 0.00 37.83 4.40
307 308 0.670546 AAGAGCGTGTCGGTTCATGG 60.671 55.000 0.00 0.00 37.83 3.66
308 309 0.716108 GAAGAGCGTGTCGGTTCATG 59.284 55.000 0.00 0.00 37.83 3.07
309 310 0.603569 AGAAGAGCGTGTCGGTTCAT 59.396 50.000 0.00 0.00 37.83 2.57
310 311 0.039437 GAGAAGAGCGTGTCGGTTCA 60.039 55.000 0.00 0.00 37.83 3.18
311 312 0.241481 AGAGAAGAGCGTGTCGGTTC 59.759 55.000 0.00 0.00 37.83 3.62
312 313 0.039074 CAGAGAAGAGCGTGTCGGTT 60.039 55.000 0.00 0.00 37.83 4.44
313 314 1.581954 CAGAGAAGAGCGTGTCGGT 59.418 57.895 0.00 0.00 41.33 4.69
314 315 1.153939 CCAGAGAAGAGCGTGTCGG 60.154 63.158 0.00 0.00 0.00 4.79
315 316 0.730834 CACCAGAGAAGAGCGTGTCG 60.731 60.000 0.00 0.00 0.00 4.35
316 317 0.598562 TCACCAGAGAAGAGCGTGTC 59.401 55.000 0.00 0.00 0.00 3.67
317 318 1.203523 GATCACCAGAGAAGAGCGTGT 59.796 52.381 0.00 0.00 0.00 4.49
318 319 1.476085 AGATCACCAGAGAAGAGCGTG 59.524 52.381 0.00 0.00 0.00 5.34
319 320 1.846007 AGATCACCAGAGAAGAGCGT 58.154 50.000 0.00 0.00 0.00 5.07
320 321 2.948979 ACTAGATCACCAGAGAAGAGCG 59.051 50.000 0.00 0.00 0.00 5.03
321 322 3.951037 TGACTAGATCACCAGAGAAGAGC 59.049 47.826 0.00 0.00 29.99 4.09
322 323 5.507817 GCATGACTAGATCACCAGAGAAGAG 60.508 48.000 0.00 0.00 41.24 2.85
323 324 4.340666 GCATGACTAGATCACCAGAGAAGA 59.659 45.833 0.00 0.00 41.24 2.87
324 325 4.501229 GGCATGACTAGATCACCAGAGAAG 60.501 50.000 0.00 0.00 41.24 2.85
325 326 3.386078 GGCATGACTAGATCACCAGAGAA 59.614 47.826 0.00 0.00 41.24 2.87
326 327 2.961741 GGCATGACTAGATCACCAGAGA 59.038 50.000 0.00 0.00 41.24 3.10
327 328 2.288091 CGGCATGACTAGATCACCAGAG 60.288 54.545 0.00 0.00 41.24 3.35
328 329 1.683385 CGGCATGACTAGATCACCAGA 59.317 52.381 0.00 0.00 41.24 3.86
329 330 1.269988 CCGGCATGACTAGATCACCAG 60.270 57.143 0.00 0.00 41.24 4.00
330 331 0.752658 CCGGCATGACTAGATCACCA 59.247 55.000 0.00 0.00 41.24 4.17
331 332 0.034059 CCCGGCATGACTAGATCACC 59.966 60.000 0.00 0.00 41.24 4.02
332 333 0.034059 CCCCGGCATGACTAGATCAC 59.966 60.000 0.00 0.00 41.24 3.06
333 334 1.758440 GCCCCGGCATGACTAGATCA 61.758 60.000 0.00 0.00 43.13 2.92
334 335 1.004440 GCCCCGGCATGACTAGATC 60.004 63.158 0.00 0.00 41.49 2.75
335 336 3.151906 GCCCCGGCATGACTAGAT 58.848 61.111 0.00 0.00 41.49 1.98
348 349 2.514824 GCTCTTCATCGGTGCCCC 60.515 66.667 0.00 0.00 0.00 5.80
349 350 2.892425 CGCTCTTCATCGGTGCCC 60.892 66.667 0.00 0.00 0.00 5.36
350 351 3.567797 GCGCTCTTCATCGGTGCC 61.568 66.667 0.00 0.00 0.00 5.01
351 352 3.567797 GGCGCTCTTCATCGGTGC 61.568 66.667 7.64 0.00 35.98 5.01
352 353 2.125552 TGGCGCTCTTCATCGGTG 60.126 61.111 7.64 0.00 0.00 4.94
353 354 2.125512 GTGGCGCTCTTCATCGGT 60.126 61.111 7.64 0.00 0.00 4.69
354 355 2.169789 CAGTGGCGCTCTTCATCGG 61.170 63.158 7.64 0.00 0.00 4.18
355 356 2.169789 CCAGTGGCGCTCTTCATCG 61.170 63.158 7.64 0.00 0.00 3.84
356 357 2.467826 GCCAGTGGCGCTCTTCATC 61.468 63.158 20.55 0.00 39.62 2.92
357 358 2.437359 GCCAGTGGCGCTCTTCAT 60.437 61.111 20.55 0.00 39.62 2.57
367 368 1.008538 GCGTTGTTGAAGCCAGTGG 60.009 57.895 4.20 4.20 0.00 4.00
368 369 4.614673 GCGTTGTTGAAGCCAGTG 57.385 55.556 0.00 0.00 0.00 3.66
373 374 0.874390 TGAGATGGCGTTGTTGAAGC 59.126 50.000 0.00 0.00 0.00 3.86
374 375 1.136252 CGTGAGATGGCGTTGTTGAAG 60.136 52.381 0.00 0.00 0.00 3.02
375 376 0.865111 CGTGAGATGGCGTTGTTGAA 59.135 50.000 0.00 0.00 0.00 2.69
376 377 1.565156 GCGTGAGATGGCGTTGTTGA 61.565 55.000 0.00 0.00 0.00 3.18
377 378 1.154413 GCGTGAGATGGCGTTGTTG 60.154 57.895 0.00 0.00 0.00 3.33
378 379 1.596752 TGCGTGAGATGGCGTTGTT 60.597 52.632 0.00 0.00 0.00 2.83
379 380 2.030412 TGCGTGAGATGGCGTTGT 59.970 55.556 0.00 0.00 0.00 3.32
380 381 1.568612 AAGTGCGTGAGATGGCGTTG 61.569 55.000 0.00 0.00 0.00 4.10
381 382 1.301716 AAGTGCGTGAGATGGCGTT 60.302 52.632 0.00 0.00 0.00 4.84
382 383 2.029288 CAAGTGCGTGAGATGGCGT 61.029 57.895 0.00 0.00 0.00 5.68
383 384 1.737735 TCAAGTGCGTGAGATGGCG 60.738 57.895 0.00 0.00 0.00 5.69
384 385 1.790387 GTCAAGTGCGTGAGATGGC 59.210 57.895 0.00 0.00 0.00 4.40
385 386 0.667487 ACGTCAAGTGCGTGAGATGG 60.667 55.000 0.00 0.00 41.33 3.51
386 387 1.914051 CTACGTCAAGTGCGTGAGATG 59.086 52.381 0.00 0.00 42.87 2.90
387 388 1.810755 TCTACGTCAAGTGCGTGAGAT 59.189 47.619 0.00 0.00 42.87 2.75
388 389 1.069432 GTCTACGTCAAGTGCGTGAGA 60.069 52.381 0.00 6.97 42.87 3.27
389 390 1.328439 GTCTACGTCAAGTGCGTGAG 58.672 55.000 0.00 5.41 42.87 3.51
390 391 0.039798 GGTCTACGTCAAGTGCGTGA 60.040 55.000 0.00 4.66 42.87 4.35
391 392 1.007336 GGGTCTACGTCAAGTGCGTG 61.007 60.000 0.00 2.98 42.87 5.34
392 393 1.288127 GGGTCTACGTCAAGTGCGT 59.712 57.895 0.00 6.16 45.11 5.24
393 394 1.445582 GGGGTCTACGTCAAGTGCG 60.446 63.158 0.00 0.00 0.00 5.34
394 395 1.445582 CGGGGTCTACGTCAAGTGC 60.446 63.158 0.00 0.00 0.00 4.40
395 396 1.214589 CCGGGGTCTACGTCAAGTG 59.785 63.158 0.00 0.00 0.00 3.16
396 397 2.643232 GCCGGGGTCTACGTCAAGT 61.643 63.158 2.18 0.00 0.00 3.16
397 398 2.183555 GCCGGGGTCTACGTCAAG 59.816 66.667 2.18 0.00 0.00 3.02
398 399 2.283388 AGCCGGGGTCTACGTCAA 60.283 61.111 2.18 0.00 0.00 3.18
399 400 2.753043 GAGCCGGGGTCTACGTCA 60.753 66.667 18.68 0.00 0.00 4.35
400 401 3.885521 CGAGCCGGGGTCTACGTC 61.886 72.222 22.65 0.00 0.00 4.34
401 402 4.415150 TCGAGCCGGGGTCTACGT 62.415 66.667 22.65 0.00 0.00 3.57
402 403 3.584052 CTCGAGCCGGGGTCTACG 61.584 72.222 22.65 11.59 0.00 3.51
403 404 3.902086 GCTCGAGCCGGGGTCTAC 61.902 72.222 27.22 9.09 34.31 2.59
413 414 4.959596 GGAGATGGGCGCTCGAGC 62.960 72.222 27.64 27.64 33.19 5.03
414 415 2.691674 GAAGGAGATGGGCGCTCGAG 62.692 65.000 8.45 8.45 33.19 4.04
415 416 2.759973 AAGGAGATGGGCGCTCGA 60.760 61.111 7.64 0.00 33.19 4.04
416 417 2.279784 GAAGGAGATGGGCGCTCG 60.280 66.667 7.64 0.00 33.19 5.03
417 418 2.279784 CGAAGGAGATGGGCGCTC 60.280 66.667 7.64 2.47 0.00 5.03
418 419 2.759973 TCGAAGGAGATGGGCGCT 60.760 61.111 7.64 0.00 0.00 5.92
419 420 2.586357 GTCGAAGGAGATGGGCGC 60.586 66.667 0.00 0.00 0.00 6.53
420 421 2.278857 CGTCGAAGGAGATGGGCG 60.279 66.667 0.00 0.00 0.00 6.13
421 422 1.227002 GACGTCGAAGGAGATGGGC 60.227 63.158 0.00 0.00 0.00 5.36
422 423 1.064296 CGACGTCGAAGGAGATGGG 59.936 63.158 33.35 0.00 43.02 4.00
423 424 1.586564 GCGACGTCGAAGGAGATGG 60.587 63.158 39.74 8.77 43.02 3.51
424 425 1.134530 GTGCGACGTCGAAGGAGATG 61.135 60.000 39.74 9.55 43.02 2.90
425 426 1.136984 GTGCGACGTCGAAGGAGAT 59.863 57.895 39.74 0.00 43.02 2.75
426 427 1.788067 TTGTGCGACGTCGAAGGAGA 61.788 55.000 39.74 17.20 43.02 3.71
427 428 1.371267 TTGTGCGACGTCGAAGGAG 60.371 57.895 39.74 11.89 43.02 3.69
428 429 1.659335 GTTGTGCGACGTCGAAGGA 60.659 57.895 39.74 19.04 43.02 3.36
429 430 1.484227 TTGTTGTGCGACGTCGAAGG 61.484 55.000 39.74 13.08 43.02 3.46
430 431 0.381428 GTTGTTGTGCGACGTCGAAG 60.381 55.000 39.74 13.47 43.02 3.79
431 432 1.632120 GTTGTTGTGCGACGTCGAA 59.368 52.632 39.74 29.65 43.02 3.71
432 433 2.232296 GGTTGTTGTGCGACGTCGA 61.232 57.895 39.74 22.22 43.02 4.20
433 434 2.244382 GGTTGTTGTGCGACGTCG 59.756 61.111 32.57 32.57 43.27 5.12
434 435 1.828331 GAGGGTTGTTGTGCGACGTC 61.828 60.000 5.18 5.18 32.16 4.34
435 436 1.885850 GAGGGTTGTTGTGCGACGT 60.886 57.895 0.00 0.00 32.16 4.34
436 437 0.319211 TAGAGGGTTGTTGTGCGACG 60.319 55.000 0.00 0.00 32.16 5.12
437 438 1.429463 CTAGAGGGTTGTTGTGCGAC 58.571 55.000 0.00 0.00 0.00 5.19
438 439 0.320421 GCTAGAGGGTTGTTGTGCGA 60.320 55.000 0.00 0.00 0.00 5.10
439 440 1.626654 CGCTAGAGGGTTGTTGTGCG 61.627 60.000 0.00 0.00 36.41 5.34
440 441 1.912371 GCGCTAGAGGGTTGTTGTGC 61.912 60.000 0.00 0.00 0.00 4.57
441 442 1.298859 GGCGCTAGAGGGTTGTTGTG 61.299 60.000 7.64 0.00 0.00 3.33
442 443 1.003718 GGCGCTAGAGGGTTGTTGT 60.004 57.895 7.64 0.00 0.00 3.32
443 444 1.745489 GGGCGCTAGAGGGTTGTTG 60.745 63.158 7.64 0.00 0.00 3.33
444 445 1.562672 ATGGGCGCTAGAGGGTTGTT 61.563 55.000 7.64 0.00 0.00 2.83
445 446 1.972660 GATGGGCGCTAGAGGGTTGT 61.973 60.000 7.64 0.00 0.00 3.32
446 447 1.227674 GATGGGCGCTAGAGGGTTG 60.228 63.158 7.64 0.00 0.00 3.77
447 448 1.383248 AGATGGGCGCTAGAGGGTT 60.383 57.895 7.64 0.00 0.00 4.11
448 449 1.834822 GAGATGGGCGCTAGAGGGT 60.835 63.158 7.64 0.00 0.00 4.34
449 450 2.578714 GGAGATGGGCGCTAGAGGG 61.579 68.421 7.64 0.00 0.00 4.30
450 451 1.118356 AAGGAGATGGGCGCTAGAGG 61.118 60.000 7.64 0.00 0.00 3.69
454 455 1.455032 TCGAAGGAGATGGGCGCTA 60.455 57.895 7.64 0.00 0.00 4.26
463 464 1.788067 TTGTGCGACGTCGAAGGAGA 61.788 55.000 39.74 17.20 43.02 3.71
501 502 1.683917 CTTGACCAGAGCGCCTACTAT 59.316 52.381 2.29 0.00 0.00 2.12
595 601 1.226295 GTTAGCGGCAATGCGAACC 60.226 57.895 1.45 0.00 42.40 3.62
598 604 1.813753 GAGGTTAGCGGCAATGCGA 60.814 57.895 1.45 0.00 40.67 5.10
602 611 0.535335 TTCTCGAGGTTAGCGGCAAT 59.465 50.000 13.56 0.00 0.00 3.56
612 621 2.028020 CCTAGCTGGTTTTTCTCGAGGT 60.028 50.000 13.56 0.00 0.00 3.85
695 727 0.389817 TCGTTCTGGCGGTGATCAAG 60.390 55.000 0.00 0.00 0.00 3.02
713 747 9.962759 TCTTTAGCTATAATTTCGTTTCGTTTC 57.037 29.630 0.00 0.00 0.00 2.78
738 772 9.149225 TGCACACATTCAATATATTGGTTTTTC 57.851 29.630 22.31 8.40 38.30 2.29
749 783 5.411361 ACGTACACTTGCACACATTCAATAT 59.589 36.000 0.00 0.00 0.00 1.28
750 784 4.752604 ACGTACACTTGCACACATTCAATA 59.247 37.500 0.00 0.00 0.00 1.90
759 793 0.462937 AAGGCACGTACACTTGCACA 60.463 50.000 12.20 0.00 42.15 4.57
848 892 8.239314 TGTTAATTAAGAGAGTAGTGGTACGTG 58.761 37.037 0.00 0.00 33.97 4.49
860 904 9.329913 CGTTCAAATGGTTGTTAATTAAGAGAG 57.670 33.333 0.00 0.00 36.07 3.20
861 905 9.058174 TCGTTCAAATGGTTGTTAATTAAGAGA 57.942 29.630 0.00 0.00 36.07 3.10
862 906 9.840427 ATCGTTCAAATGGTTGTTAATTAAGAG 57.160 29.630 0.00 0.00 36.07 2.85
882 929 7.636326 GCTATATAGCTAGGAGAAGATCGTTC 58.364 42.308 24.63 0.00 45.62 3.95
936 986 3.325293 TCTTGTCTCTGTGGAAGATGC 57.675 47.619 0.00 0.00 33.29 3.91
937 987 4.440880 GGATCTTGTCTCTGTGGAAGATG 58.559 47.826 0.00 0.00 35.71 2.90
938 988 3.454082 GGGATCTTGTCTCTGTGGAAGAT 59.546 47.826 0.00 0.00 37.77 2.40
941 991 2.619931 TGGGATCTTGTCTCTGTGGAA 58.380 47.619 0.00 0.00 0.00 3.53
942 992 2.325661 TGGGATCTTGTCTCTGTGGA 57.674 50.000 0.00 0.00 0.00 4.02
945 995 2.836981 CCTCTTGGGATCTTGTCTCTGT 59.163 50.000 0.00 0.00 37.23 3.41
953 1024 1.555533 GACGGTTCCTCTTGGGATCTT 59.444 52.381 0.00 0.00 44.66 2.40
973 1049 0.800012 GACGAGCTAGCTAGATCCCG 59.200 60.000 28.45 22.08 35.41 5.14
2030 2210 2.756207 TCATGTTCATGGTTGCATCTGG 59.244 45.455 12.02 0.00 0.00 3.86
2107 2290 4.207165 ACACATTATCCAAAGGAATCCCG 58.793 43.478 0.00 0.00 34.34 5.14
2131 2317 1.210722 CCCCAAGCTCCTTCTTCCTAC 59.789 57.143 0.00 0.00 0.00 3.18
2132 2318 1.584724 CCCCAAGCTCCTTCTTCCTA 58.415 55.000 0.00 0.00 0.00 2.94
2328 2520 2.190841 CGGGGGAACAGCGTGTTTT 61.191 57.895 5.14 0.00 41.28 2.43
2343 2535 0.804989 GCAACTCTGATTTGGACGGG 59.195 55.000 9.40 0.00 0.00 5.28
2363 2569 1.820519 GTCATGGTGTGATGCATGGTT 59.179 47.619 2.46 0.00 39.48 3.67
2394 2606 4.436998 GCCGCTCACGCCTGTAGT 62.437 66.667 0.00 0.00 38.22 2.73
2772 3068 7.107250 ACTTGTGAGTTCTGATGCATGCATC 62.107 44.000 41.15 41.15 42.10 3.91
2800 3099 7.996385 ACTAACTTGATTTTTGTACACAAGCT 58.004 30.769 18.19 11.65 40.72 3.74
2803 3102 8.865001 GCAAACTAACTTGATTTTTGTACACAA 58.135 29.630 0.00 0.00 31.19 3.33
2804 3103 8.247562 AGCAAACTAACTTGATTTTTGTACACA 58.752 29.630 0.00 0.00 31.19 3.72
2805 3104 8.628882 AGCAAACTAACTTGATTTTTGTACAC 57.371 30.769 0.00 0.00 31.19 2.90
2844 3148 4.841422 AGAGCAACAATGTCAATCTAGCT 58.159 39.130 0.00 0.00 0.00 3.32
2860 3164 9.764363 CATTAGTGTATAGTTAATGGAGAGCAA 57.236 33.333 0.00 0.00 33.33 3.91
3200 3523 7.229308 AGTACAATGATATGGATGCAGACATT 58.771 34.615 10.69 9.28 36.35 2.71
3203 3526 7.382110 AGTAGTACAATGATATGGATGCAGAC 58.618 38.462 2.52 0.00 0.00 3.51
3226 3552 9.860898 GTTTCCTTCAGATGCAAAATAAATAGT 57.139 29.630 0.00 0.00 0.00 2.12
3245 3571 4.140536 CTCTGCTTCCTTGAAGTTTCCTT 58.859 43.478 5.79 0.00 41.27 3.36
3366 3706 7.712204 TTTTTGAAGAGGAGTTTGGTTACTT 57.288 32.000 0.00 0.00 0.00 2.24
3379 3719 7.466746 TCCACCTGAAATATTTTTGAAGAGG 57.533 36.000 1.43 4.47 0.00 3.69
3380 3720 8.359642 TGTTCCACCTGAAATATTTTTGAAGAG 58.640 33.333 1.43 0.00 33.94 2.85
3381 3721 8.243961 TGTTCCACCTGAAATATTTTTGAAGA 57.756 30.769 1.43 0.00 33.94 2.87
3382 3722 9.492973 AATGTTCCACCTGAAATATTTTTGAAG 57.507 29.630 1.43 0.00 33.94 3.02
3383 3723 9.487790 GAATGTTCCACCTGAAATATTTTTGAA 57.512 29.630 1.43 0.00 33.94 2.69
3385 3725 8.830201 TGAATGTTCCACCTGAAATATTTTTG 57.170 30.769 1.43 0.00 33.94 2.44
3386 3726 8.869109 TCTGAATGTTCCACCTGAAATATTTTT 58.131 29.630 1.43 0.00 33.94 1.94
3459 3799 2.634940 GCTGAACATAGCCATCCCTAGA 59.365 50.000 0.00 0.00 37.73 2.43
3532 3876 5.704515 TCTTGGAGCAAATGAGAAAGAGAAG 59.295 40.000 0.00 0.00 0.00 2.85
3573 3918 3.552875 AGAGACCTGGATCAATTGCATG 58.447 45.455 0.00 0.00 0.00 4.06
3626 3971 1.371267 CGTCGCGACAGACTTTCCA 60.371 57.895 35.71 0.00 38.90 3.53
3650 3995 0.036388 TCAAGAACCTCACCGCCATC 60.036 55.000 0.00 0.00 0.00 3.51
3866 4213 5.712004 TGCCTGTTGAACAATCACATATTG 58.288 37.500 0.00 0.00 34.61 1.90
4105 4452 5.008811 CCCAAGGAGAACGTAGTAGAGTATG 59.991 48.000 0.00 0.00 45.00 2.39
4165 4512 7.841282 TTCTACTTCTTCCTACCCATAGATG 57.159 40.000 0.00 0.00 0.00 2.90
4199 4546 4.603985 CCCACATGTTCATTGATCATTCG 58.396 43.478 7.36 1.79 0.00 3.34
4200 4547 4.098960 AGCCCACATGTTCATTGATCATTC 59.901 41.667 7.36 0.00 0.00 2.67
4206 4553 2.161855 GACAGCCCACATGTTCATTGA 58.838 47.619 0.00 0.00 0.00 2.57
4254 4606 4.302067 TCTCCCTATCCTTCTGCTTGATT 58.698 43.478 0.00 0.00 0.00 2.57
4628 5013 4.077300 TGTCTGTGCAAGATTTCAGAGT 57.923 40.909 2.91 0.00 37.56 3.24
4630 5015 5.357878 AGTTTTGTCTGTGCAAGATTTCAGA 59.642 36.000 0.00 0.00 37.23 3.27
4631 5016 5.585390 AGTTTTGTCTGTGCAAGATTTCAG 58.415 37.500 0.00 0.00 37.23 3.02
4632 5017 5.357878 AGAGTTTTGTCTGTGCAAGATTTCA 59.642 36.000 0.00 0.00 37.23 2.69
4633 5018 5.684626 CAGAGTTTTGTCTGTGCAAGATTTC 59.315 40.000 0.00 0.00 39.39 2.17
4636 5021 4.454678 TCAGAGTTTTGTCTGTGCAAGAT 58.545 39.130 0.00 0.00 43.89 2.40
4637 5022 3.872696 TCAGAGTTTTGTCTGTGCAAGA 58.127 40.909 0.00 0.00 43.89 3.02
4638 5023 4.621068 TTCAGAGTTTTGTCTGTGCAAG 57.379 40.909 0.00 0.00 43.89 4.01
4641 5026 4.781071 CAGATTCAGAGTTTTGTCTGTGC 58.219 43.478 1.03 0.00 43.89 4.57
4642 5027 4.274214 TGCAGATTCAGAGTTTTGTCTGTG 59.726 41.667 1.03 0.00 43.89 3.66
4643 5028 4.454678 TGCAGATTCAGAGTTTTGTCTGT 58.545 39.130 1.03 0.00 43.89 3.41
4644 5029 5.411977 AGATGCAGATTCAGAGTTTTGTCTG 59.588 40.000 0.00 0.00 44.71 3.51
4645 5030 5.558818 AGATGCAGATTCAGAGTTTTGTCT 58.441 37.500 0.00 0.00 0.00 3.41
4646 5031 5.410746 TGAGATGCAGATTCAGAGTTTTGTC 59.589 40.000 0.00 0.00 0.00 3.18
4647 5032 5.311265 TGAGATGCAGATTCAGAGTTTTGT 58.689 37.500 0.00 0.00 0.00 2.83
4648 5033 5.874895 TGAGATGCAGATTCAGAGTTTTG 57.125 39.130 0.00 0.00 0.00 2.44
4678 5063 6.310711 GCTGTAAACTAGTACTAGCTGGTTTG 59.689 42.308 26.54 13.94 45.40 2.93
4682 5067 4.096081 ACGCTGTAAACTAGTACTAGCTGG 59.904 45.833 26.54 13.37 36.66 4.85
4686 5071 8.955061 TTAACAACGCTGTAAACTAGTACTAG 57.045 34.615 25.30 25.30 35.48 2.57
4798 5248 4.410228 TCAAGATCCTCTGGTAAATCCCTG 59.590 45.833 0.00 0.00 34.77 4.45
4824 5274 0.776810 TCTCCCCCTTGTTTCATGCA 59.223 50.000 0.00 0.00 0.00 3.96
4845 5295 2.483876 AGATTCTCTCTCTCTCGCTCG 58.516 52.381 0.00 0.00 0.00 5.03
4849 5299 3.489059 GCCACAAGATTCTCTCTCTCTCG 60.489 52.174 0.00 0.00 31.03 4.04
4970 5424 0.250858 CCTCCACATGCACAGACCAA 60.251 55.000 0.00 0.00 0.00 3.67
5057 7229 7.831753 TCTACTAAACAATTCAGAGTCTCAGG 58.168 38.462 1.94 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.