Multiple sequence alignment - TraesCS7D01G477500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G477500 chr7D 100.000 8267 0 0 1 8267 588550211 588541945 0.000000e+00 15267
1 TraesCS7D01G477500 chr7D 91.579 95 7 1 7941 8035 477931402 477931495 6.730000e-26 130
2 TraesCS7D01G477500 chr7B 93.468 5695 249 57 2524 8179 662658068 662652458 0.000000e+00 8342
3 TraesCS7D01G477500 chr7B 90.121 1073 55 18 1490 2527 662659253 662658197 0.000000e+00 1347
4 TraesCS7D01G477500 chr7B 80.154 650 75 28 869 1498 662659895 662659280 3.540000e-118 436
5 TraesCS7D01G477500 chr7B 81.501 373 25 19 542 880 662660282 662659920 4.920000e-67 267
6 TraesCS7D01G477500 chr7A 96.218 4178 127 18 3573 7740 680330639 680326483 0.000000e+00 6811
7 TraesCS7D01G477500 chr7A 85.894 1992 129 78 599 2525 680334147 680332243 0.000000e+00 1982
8 TraesCS7D01G477500 chr7A 95.301 830 31 3 2526 3349 680332177 680331350 0.000000e+00 1310
9 TraesCS7D01G477500 chr7A 94.118 153 5 1 3424 3576 680330825 680330677 6.450000e-56 230
10 TraesCS7D01G477500 chr7A 85.377 212 22 7 7973 8175 680326410 680326199 2.340000e-50 211
11 TraesCS7D01G477500 chr7A 94.595 111 5 1 6236 6346 21353773 21353882 3.970000e-38 171
12 TraesCS7D01G477500 chr7A 87.156 109 13 1 107 214 680337473 680337365 1.130000e-23 122
13 TraesCS7D01G477500 chr3A 90.909 110 8 2 6241 6349 78190502 78190610 6.690000e-31 147
14 TraesCS7D01G477500 chr2B 91.667 96 7 1 7941 8035 416252070 416252165 1.870000e-26 132
15 TraesCS7D01G477500 chrUn 91.579 95 7 1 7941 8035 4342524 4342617 6.730000e-26 130
16 TraesCS7D01G477500 chrUn 91.579 95 7 1 7941 8035 123971652 123971745 6.730000e-26 130
17 TraesCS7D01G477500 chrUn 91.579 95 7 1 7941 8035 131821928 131821835 6.730000e-26 130
18 TraesCS7D01G477500 chr5A 91.579 95 7 1 7941 8035 616778368 616778275 6.730000e-26 130
19 TraesCS7D01G477500 chr1B 91.579 95 7 1 7941 8035 556349627 556349720 6.730000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G477500 chr7D 588541945 588550211 8266 True 15267.000000 15267 100.000000 1 8267 1 chr7D.!!$R1 8266
1 TraesCS7D01G477500 chr7B 662652458 662660282 7824 True 2598.000000 8342 86.311000 542 8179 4 chr7B.!!$R1 7637
2 TraesCS7D01G477500 chr7A 680326199 680337473 11274 True 1777.666667 6811 90.677333 107 8175 6 chr7A.!!$R1 8068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 265 0.040870 ATCGATGCGTGCTCGACTAG 60.041 55.000 13.13 0.29 46.76 2.57 F
1151 4140 0.106619 TCTCCTCCTCTCGTTAGCCC 60.107 60.000 0.00 0.00 0.00 5.19 F
1873 4953 0.296642 GCACCACTACGCGTATTTCG 59.703 55.000 20.91 10.61 43.12 3.46 F
2138 5253 0.334335 TGGCAGCATGGGGATTTGTA 59.666 50.000 0.00 0.00 35.86 2.41 F
2139 5254 1.063038 TGGCAGCATGGGGATTTGTAT 60.063 47.619 0.00 0.00 35.86 2.29 F
2277 5392 1.302993 CGGGTGGATTCCAAACGGT 60.303 57.895 17.83 0.00 34.18 4.83 F
2372 5487 1.537202 CTTCGTTGGGCTCTCTTTTGG 59.463 52.381 0.00 0.00 0.00 3.28 F
4270 8022 1.376424 CAGCATCACCGCCTTCAGT 60.376 57.895 0.00 0.00 0.00 3.41 F
6054 9814 2.030007 TCAGCTTTGCTAATGTGGTTGC 60.030 45.455 0.00 0.00 36.40 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1300 4332 0.037046 GGAGTAAAAACCCGCGGAGA 60.037 55.000 30.73 1.04 0.00 3.71 R
2292 5407 0.474854 TAACTCCCTGCCAACCCTCA 60.475 55.000 0.00 0.00 0.00 3.86 R
3624 7376 2.224597 TGAAAGCCAGATGACAGAAGCA 60.225 45.455 0.00 0.00 0.00 3.91 R
3691 7443 2.283298 GATGCATTGGCTTCTCGAGAA 58.717 47.619 25.57 25.57 40.15 2.87 R
4015 7767 5.410924 TCACTTGAAGATCGGTATGTTCTG 58.589 41.667 0.00 0.00 36.56 3.02 R
4270 8022 3.843619 TCCTATTGATGAAGGTGGTGACA 59.156 43.478 0.00 0.00 34.30 3.58 R
4293 8045 1.360192 GTGTTGGAGTTGGTGCTGC 59.640 57.895 0.00 0.00 0.00 5.25 R
6235 10001 1.605165 CCAAGCGGGGCCTTAACAA 60.605 57.895 0.84 0.00 0.00 2.83 R
7305 11077 0.038709 CCAAAAATTTCCGAGCGGCA 60.039 50.000 1.45 0.00 34.68 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.496529 CATGGTATATCTGGTCACGATTTTT 57.503 36.000 0.00 0.00 0.00 1.94
25 26 7.576236 CATGGTATATCTGGTCACGATTTTTC 58.424 38.462 0.00 0.00 0.00 2.29
26 27 6.884832 TGGTATATCTGGTCACGATTTTTCT 58.115 36.000 0.00 0.00 0.00 2.52
27 28 6.984474 TGGTATATCTGGTCACGATTTTTCTC 59.016 38.462 0.00 0.00 0.00 2.87
28 29 6.984474 GGTATATCTGGTCACGATTTTTCTCA 59.016 38.462 0.00 0.00 0.00 3.27
29 30 7.494625 GGTATATCTGGTCACGATTTTTCTCAA 59.505 37.037 0.00 0.00 0.00 3.02
30 31 7.921786 ATATCTGGTCACGATTTTTCTCAAA 57.078 32.000 0.00 0.00 0.00 2.69
31 32 6.633500 ATCTGGTCACGATTTTTCTCAAAA 57.367 33.333 0.00 0.00 36.30 2.44
32 33 6.443934 TCTGGTCACGATTTTTCTCAAAAA 57.556 33.333 0.00 0.00 43.76 1.94
33 34 6.494842 TCTGGTCACGATTTTTCTCAAAAAG 58.505 36.000 0.00 0.00 42.97 2.27
34 35 6.317642 TCTGGTCACGATTTTTCTCAAAAAGA 59.682 34.615 0.00 0.00 42.97 2.52
35 36 7.013274 TCTGGTCACGATTTTTCTCAAAAAGAT 59.987 33.333 0.00 0.00 42.97 2.40
36 37 7.138736 TGGTCACGATTTTTCTCAAAAAGATC 58.861 34.615 0.00 0.00 42.97 2.75
37 38 7.138736 GGTCACGATTTTTCTCAAAAAGATCA 58.861 34.615 0.00 0.00 42.97 2.92
38 39 7.809806 GGTCACGATTTTTCTCAAAAAGATCAT 59.190 33.333 0.00 0.00 42.97 2.45
39 40 8.844690 GTCACGATTTTTCTCAAAAAGATCATC 58.155 33.333 0.00 0.00 42.97 2.92
40 41 8.023128 TCACGATTTTTCTCAAAAAGATCATCC 58.977 33.333 0.00 0.00 42.97 3.51
41 42 7.007725 CACGATTTTTCTCAAAAAGATCATCCG 59.992 37.037 0.00 0.00 42.97 4.18
42 43 6.470235 CGATTTTTCTCAAAAAGATCATCCGG 59.530 38.462 0.00 0.00 42.97 5.14
43 44 6.648879 TTTTTCTCAAAAAGATCATCCGGT 57.351 33.333 0.00 0.00 35.84 5.28
44 45 5.880054 TTTCTCAAAAAGATCATCCGGTC 57.120 39.130 0.00 0.00 32.82 4.79
45 46 3.521560 TCTCAAAAAGATCATCCGGTCG 58.478 45.455 0.00 0.00 0.00 4.79
46 47 2.006888 TCAAAAAGATCATCCGGTCGC 58.993 47.619 0.00 0.00 0.00 5.19
47 48 1.006832 AAAAAGATCATCCGGTCGCG 58.993 50.000 0.00 0.00 0.00 5.87
48 49 0.174845 AAAAGATCATCCGGTCGCGA 59.825 50.000 3.71 3.71 0.00 5.87
49 50 0.527817 AAAGATCATCCGGTCGCGAC 60.528 55.000 30.67 30.67 0.00 5.19
50 51 1.384989 AAGATCATCCGGTCGCGACT 61.385 55.000 35.50 16.71 0.00 4.18
51 52 1.658717 GATCATCCGGTCGCGACTG 60.659 63.158 35.64 35.64 37.44 3.51
57 58 2.355363 CGGTCGCGACTGGAAACA 60.355 61.111 35.15 0.00 39.59 2.83
58 59 2.654912 CGGTCGCGACTGGAAACAC 61.655 63.158 35.15 17.39 35.60 3.32
59 60 2.654912 GGTCGCGACTGGAAACACG 61.655 63.158 35.50 0.00 35.60 4.49
60 61 1.659335 GTCGCGACTGGAAACACGA 60.659 57.895 31.12 0.00 33.43 4.35
61 62 1.371267 TCGCGACTGGAAACACGAG 60.371 57.895 3.71 0.00 31.26 4.18
62 63 2.853914 GCGACTGGAAACACGAGC 59.146 61.111 0.00 0.00 32.06 5.03
63 64 1.954146 GCGACTGGAAACACGAGCA 60.954 57.895 0.00 0.00 32.06 4.26
64 65 1.495584 GCGACTGGAAACACGAGCAA 61.496 55.000 0.00 0.00 32.06 3.91
65 66 0.934496 CGACTGGAAACACGAGCAAA 59.066 50.000 0.00 0.00 32.06 3.68
66 67 1.531149 CGACTGGAAACACGAGCAAAT 59.469 47.619 0.00 0.00 32.06 2.32
67 68 2.032030 CGACTGGAAACACGAGCAAATT 60.032 45.455 0.00 0.00 32.06 1.82
68 69 3.185594 CGACTGGAAACACGAGCAAATTA 59.814 43.478 0.00 0.00 32.06 1.40
69 70 4.319190 CGACTGGAAACACGAGCAAATTAA 60.319 41.667 0.00 0.00 32.06 1.40
70 71 5.508200 ACTGGAAACACGAGCAAATTAAA 57.492 34.783 0.00 0.00 35.60 1.52
71 72 6.084326 ACTGGAAACACGAGCAAATTAAAT 57.916 33.333 0.00 0.00 35.60 1.40
72 73 7.209471 ACTGGAAACACGAGCAAATTAAATA 57.791 32.000 0.00 0.00 35.60 1.40
73 74 7.081976 ACTGGAAACACGAGCAAATTAAATAC 58.918 34.615 0.00 0.00 35.60 1.89
74 75 6.971602 TGGAAACACGAGCAAATTAAATACA 58.028 32.000 0.00 0.00 33.40 2.29
75 76 7.426410 TGGAAACACGAGCAAATTAAATACAA 58.574 30.769 0.00 0.00 33.40 2.41
76 77 7.380065 TGGAAACACGAGCAAATTAAATACAAC 59.620 33.333 0.00 0.00 33.40 3.32
77 78 7.593644 GGAAACACGAGCAAATTAAATACAACT 59.406 33.333 0.00 0.00 0.00 3.16
78 79 8.865590 AAACACGAGCAAATTAAATACAACTT 57.134 26.923 0.00 0.00 0.00 2.66
79 80 7.851822 ACACGAGCAAATTAAATACAACTTG 57.148 32.000 0.00 0.00 0.00 3.16
80 81 6.861055 ACACGAGCAAATTAAATACAACTTGG 59.139 34.615 0.00 0.00 0.00 3.61
81 82 6.307800 CACGAGCAAATTAAATACAACTTGGG 59.692 38.462 0.00 0.00 0.00 4.12
82 83 6.015772 ACGAGCAAATTAAATACAACTTGGGT 60.016 34.615 0.00 0.00 0.00 4.51
83 84 6.866248 CGAGCAAATTAAATACAACTTGGGTT 59.134 34.615 0.00 0.00 35.86 4.11
84 85 7.061789 CGAGCAAATTAAATACAACTTGGGTTC 59.938 37.037 0.00 0.00 32.73 3.62
85 86 6.866248 AGCAAATTAAATACAACTTGGGTTCG 59.134 34.615 0.00 0.00 32.73 3.95
86 87 6.643360 GCAAATTAAATACAACTTGGGTTCGT 59.357 34.615 0.00 0.00 32.73 3.85
87 88 7.358848 GCAAATTAAATACAACTTGGGTTCGTG 60.359 37.037 0.00 0.00 32.73 4.35
88 89 6.887626 ATTAAATACAACTTGGGTTCGTGT 57.112 33.333 0.00 0.00 32.73 4.49
89 90 6.696441 TTAAATACAACTTGGGTTCGTGTT 57.304 33.333 0.00 0.00 32.73 3.32
90 91 5.585820 AAATACAACTTGGGTTCGTGTTT 57.414 34.783 0.00 0.00 32.73 2.83
91 92 4.823790 ATACAACTTGGGTTCGTGTTTC 57.176 40.909 0.00 0.00 32.73 2.78
92 93 1.399089 ACAACTTGGGTTCGTGTTTCG 59.601 47.619 0.00 0.00 41.41 3.46
93 94 1.399089 CAACTTGGGTTCGTGTTTCGT 59.601 47.619 0.00 0.00 40.80 3.85
94 95 1.011333 ACTTGGGTTCGTGTTTCGTG 58.989 50.000 0.00 0.00 40.80 4.35
95 96 1.011333 CTTGGGTTCGTGTTTCGTGT 58.989 50.000 0.00 0.00 40.80 4.49
96 97 2.203401 CTTGGGTTCGTGTTTCGTGTA 58.797 47.619 0.00 0.00 40.80 2.90
97 98 1.855513 TGGGTTCGTGTTTCGTGTAG 58.144 50.000 0.00 0.00 40.80 2.74
98 99 0.509929 GGGTTCGTGTTTCGTGTAGC 59.490 55.000 0.00 0.00 40.80 3.58
99 100 1.210870 GGTTCGTGTTTCGTGTAGCA 58.789 50.000 0.00 0.00 40.80 3.49
100 101 1.593933 GGTTCGTGTTTCGTGTAGCAA 59.406 47.619 0.00 0.00 40.80 3.91
101 102 2.348218 GGTTCGTGTTTCGTGTAGCAAG 60.348 50.000 0.00 0.00 40.80 4.01
102 103 0.856641 TCGTGTTTCGTGTAGCAAGC 59.143 50.000 0.00 0.00 40.80 4.01
103 104 0.448861 CGTGTTTCGTGTAGCAAGCG 60.449 55.000 0.00 0.00 34.52 4.68
104 105 0.721483 GTGTTTCGTGTAGCAAGCGC 60.721 55.000 0.00 0.00 38.99 5.92
105 106 1.507096 GTTTCGTGTAGCAAGCGCG 60.507 57.895 0.00 0.00 45.49 6.86
127 128 4.495349 CGCTTGCCATATGAATATGCTAGC 60.495 45.833 19.49 19.49 39.28 3.42
153 155 3.747099 AGAAACGATGTATTGCAGCAC 57.253 42.857 0.00 0.00 32.00 4.40
157 159 1.733912 ACGATGTATTGCAGCACTGTG 59.266 47.619 2.76 2.76 32.00 3.66
168 170 4.074259 TGCAGCACTGTGAATCAATAGTT 58.926 39.130 12.86 0.00 0.00 2.24
172 174 6.537566 CAGCACTGTGAATCAATAGTTACAC 58.462 40.000 12.86 0.00 0.00 2.90
173 175 6.369890 CAGCACTGTGAATCAATAGTTACACT 59.630 38.462 12.86 0.00 0.00 3.55
175 177 6.147821 GCACTGTGAATCAATAGTTACACTGT 59.852 38.462 12.86 0.00 39.55 3.55
180 182 8.279800 TGTGAATCAATAGTTACACTGTTTTCG 58.720 33.333 0.00 0.00 26.40 3.46
183 185 6.462073 TCAATAGTTACACTGTTTTCGCTC 57.538 37.500 0.00 0.00 26.40 5.03
214 216 9.398538 AGTTTAAGTTGTTAGTGGTGTAATTCA 57.601 29.630 0.00 0.00 0.00 2.57
220 222 8.134895 AGTTGTTAGTGGTGTAATTCAATGTTG 58.865 33.333 0.00 0.00 0.00 3.33
221 223 7.809546 TGTTAGTGGTGTAATTCAATGTTGA 57.190 32.000 0.00 0.00 34.92 3.18
256 258 4.419522 AAAAGTTTAATCGATGCGTGCT 57.580 36.364 0.00 0.00 0.00 4.40
258 260 1.588404 AGTTTAATCGATGCGTGCTCG 59.412 47.619 0.00 3.31 40.37 5.03
261 263 0.380733 TAATCGATGCGTGCTCGACT 59.619 50.000 13.13 9.55 46.76 4.18
263 265 0.040870 ATCGATGCGTGCTCGACTAG 60.041 55.000 13.13 0.29 46.76 2.57
265 267 1.196749 CGATGCGTGCTCGACTAGTG 61.197 60.000 13.13 0.00 38.38 2.74
266 268 0.867753 GATGCGTGCTCGACTAGTGG 60.868 60.000 13.13 0.00 39.71 4.00
267 269 1.313091 ATGCGTGCTCGACTAGTGGA 61.313 55.000 13.13 3.13 39.71 4.02
269 271 1.873863 CGTGCTCGACTAGTGGACA 59.126 57.895 0.00 3.14 39.71 4.02
270 272 0.452184 CGTGCTCGACTAGTGGACAT 59.548 55.000 0.00 0.00 39.71 3.06
271 273 1.795525 CGTGCTCGACTAGTGGACATG 60.796 57.143 0.00 7.58 39.71 3.21
273 275 0.528684 GCTCGACTAGTGGACATGCC 60.529 60.000 0.00 0.00 37.10 4.40
274 276 0.248661 CTCGACTAGTGGACATGCCG 60.249 60.000 0.00 0.00 40.66 5.69
294 296 4.247380 GCATCCGGAGAGGGCAGG 62.247 72.222 11.34 0.00 41.52 4.85
300 302 3.883549 GGAGAGGGCAGGGGCATC 61.884 72.222 0.00 0.00 43.71 3.91
301 303 3.883549 GAGAGGGCAGGGGCATCC 61.884 72.222 0.71 0.00 39.68 3.51
302 304 4.765970 AGAGGGCAGGGGCATCCA 62.766 66.667 0.71 0.00 39.68 3.41
303 305 4.512914 GAGGGCAGGGGCATCCAC 62.513 72.222 0.00 0.00 43.71 4.02
329 331 3.752796 CGGAAGGATGAGCGGTAAA 57.247 52.632 0.00 0.00 0.00 2.01
331 333 2.561569 CGGAAGGATGAGCGGTAAAAT 58.438 47.619 0.00 0.00 0.00 1.82
332 334 3.724374 CGGAAGGATGAGCGGTAAAATA 58.276 45.455 0.00 0.00 0.00 1.40
335 2186 4.879545 GGAAGGATGAGCGGTAAAATACAA 59.120 41.667 0.00 0.00 0.00 2.41
342 2193 1.733360 GCGGTAAAATACAAGTCGGCA 59.267 47.619 0.00 0.00 0.00 5.69
346 2197 3.619929 GGTAAAATACAAGTCGGCATCGT 59.380 43.478 0.00 0.00 37.69 3.73
347 2198 3.740044 AAAATACAAGTCGGCATCGTG 57.260 42.857 0.00 0.00 37.69 4.35
351 2202 1.154413 CAAGTCGGCATCGTGTTGC 60.154 57.895 0.00 0.00 42.01 4.17
353 2204 1.568612 AAGTCGGCATCGTGTTGCAG 61.569 55.000 5.38 1.56 44.59 4.41
355 2206 3.725459 CGGCATCGTGTTGCAGCA 61.725 61.111 0.00 0.00 44.59 4.41
356 2207 2.644418 GGCATCGTGTTGCAGCAA 59.356 55.556 4.25 2.83 44.59 3.91
357 2208 1.443194 GGCATCGTGTTGCAGCAAG 60.443 57.895 8.49 7.59 44.59 4.01
367 2218 2.127609 GCAGCAAGCAACGTCGTC 60.128 61.111 0.00 0.00 44.79 4.20
368 2219 2.168621 CAGCAAGCAACGTCGTCG 59.831 61.111 0.00 0.00 43.34 5.12
369 2220 3.702555 AGCAAGCAACGTCGTCGC 61.703 61.111 0.00 0.00 41.18 5.19
382 3234 4.368808 GTCGCGCACGCACATGTT 62.369 61.111 16.04 0.00 42.06 2.71
406 3258 4.633769 GCAGAGAGCCTCCAAAGG 57.366 61.111 0.00 0.00 46.44 3.11
438 3296 3.833304 GCAGAACCAGCTATGCCC 58.167 61.111 0.00 0.00 32.49 5.36
439 3297 1.077501 GCAGAACCAGCTATGCCCA 60.078 57.895 0.00 0.00 32.49 5.36
449 3307 0.611896 GCTATGCCCACCCACAAACT 60.612 55.000 0.00 0.00 0.00 2.66
457 3315 2.336088 CCCACAAACTGCCGCAAG 59.664 61.111 0.00 0.00 0.00 4.01
477 3335 0.458543 AATACAGAGGCACGACAGCG 60.459 55.000 0.00 0.00 44.79 5.18
499 3361 4.074526 AGAGCTCGCACCGCACAT 62.075 61.111 8.37 0.00 0.00 3.21
500 3362 3.857854 GAGCTCGCACCGCACATG 61.858 66.667 0.00 0.00 0.00 3.21
558 3440 1.006102 CTCCACCACGTCACTCACC 60.006 63.158 0.00 0.00 0.00 4.02
562 3444 1.456892 ACCACGTCACTCACCCTGA 60.457 57.895 0.00 0.00 0.00 3.86
563 3445 1.006102 CCACGTCACTCACCCTGAC 60.006 63.158 0.00 0.00 35.61 3.51
564 3446 1.006102 CACGTCACTCACCCTGACC 60.006 63.158 0.00 0.00 35.54 4.02
566 3448 1.908793 CGTCACTCACCCTGACCCT 60.909 63.158 0.00 0.00 35.54 4.34
567 3449 1.674057 GTCACTCACCCTGACCCTG 59.326 63.158 0.00 0.00 33.23 4.45
568 3450 1.536418 TCACTCACCCTGACCCTGG 60.536 63.158 0.00 0.00 0.00 4.45
677 3564 1.517832 CATTTCCTCCTCCTCGCGT 59.482 57.895 5.77 0.00 0.00 6.01
691 3585 0.387929 TCGCGTCTGTTTTGGTCTCT 59.612 50.000 5.77 0.00 0.00 3.10
707 3601 2.106332 CTACCCGTCACCGCATCC 59.894 66.667 0.00 0.00 0.00 3.51
708 3602 3.441011 CTACCCGTCACCGCATCCC 62.441 68.421 0.00 0.00 0.00 3.85
715 3609 2.549134 CCGTCACCGCATCCCATTATTA 60.549 50.000 0.00 0.00 0.00 0.98
722 3616 2.612212 CGCATCCCATTATTATACGCCC 59.388 50.000 0.00 0.00 0.00 6.13
776 3675 1.670406 CCTTGTGCTCTGCTCGCTT 60.670 57.895 0.00 0.00 0.00 4.68
781 3680 1.598962 TGCTCTGCTCGCTTGCTTT 60.599 52.632 0.00 0.00 0.00 3.51
784 3683 1.575576 CTCTGCTCGCTTGCTTTGCT 61.576 55.000 0.00 0.00 0.00 3.91
797 3696 0.879765 CTTTGCTACTTGCTGCTGCT 59.120 50.000 17.00 0.00 43.37 4.24
798 3697 0.594602 TTTGCTACTTGCTGCTGCTG 59.405 50.000 17.00 11.59 43.37 4.41
799 3698 1.239296 TTGCTACTTGCTGCTGCTGG 61.239 55.000 17.00 11.21 43.37 4.85
800 3699 1.673665 GCTACTTGCTGCTGCTGGT 60.674 57.895 17.00 15.89 40.48 4.00
866 3789 3.512516 GCCATTGCCTCGCTGTCC 61.513 66.667 0.00 0.00 0.00 4.02
867 3790 2.046023 CCATTGCCTCGCTGTCCA 60.046 61.111 0.00 0.00 0.00 4.02
901 3860 0.180642 TCCTACTCCGATCGTGCTCT 59.819 55.000 15.09 0.00 0.00 4.09
965 3942 4.980805 GACCAACACGGCGGCTCA 62.981 66.667 13.24 0.00 39.03 4.26
966 3943 4.988598 ACCAACACGGCGGCTCAG 62.989 66.667 13.24 0.00 39.03 3.35
1151 4140 0.106619 TCTCCTCCTCTCGTTAGCCC 60.107 60.000 0.00 0.00 0.00 5.19
1219 4247 4.796231 CTCGTCGCCGGTGGAAGG 62.796 72.222 16.49 2.36 33.95 3.46
1244 4276 1.738346 GCAGGGGATTGATTTCCGGC 61.738 60.000 0.00 0.00 36.58 6.13
1387 4424 3.753774 CGTACGAACGTGGTACTGT 57.246 52.632 21.02 4.78 44.21 3.55
1388 4425 2.873170 CGTACGAACGTGGTACTGTA 57.127 50.000 21.02 3.99 44.21 2.74
1389 4426 3.181826 CGTACGAACGTGGTACTGTAA 57.818 47.619 21.02 0.00 44.21 2.41
1390 4427 2.902484 CGTACGAACGTGGTACTGTAAC 59.098 50.000 21.02 0.00 44.21 2.50
1391 4428 3.363970 CGTACGAACGTGGTACTGTAACT 60.364 47.826 21.02 0.00 44.21 2.24
1392 4429 3.715628 ACGAACGTGGTACTGTAACTT 57.284 42.857 4.27 0.00 0.00 2.66
1438 4476 0.669318 GTGGTTACAGCTAGCGCACA 60.669 55.000 11.47 1.38 39.10 4.57
1442 4480 0.456142 TTACAGCTAGCGCACAGACG 60.456 55.000 11.47 3.47 39.10 4.18
1485 4523 1.473434 GGCTTTCCGGATAGGTCTGTG 60.473 57.143 21.51 0.00 41.99 3.66
1499 4572 3.934391 CTGTGGGTTCGACTCCGGC 62.934 68.421 0.00 0.00 36.24 6.13
1619 4693 2.210116 ACATGTGTAATTCGGATCGGC 58.790 47.619 0.00 0.00 0.00 5.54
1776 4856 3.460857 AAGAGATATGTTGGTCGCTCC 57.539 47.619 0.00 0.00 0.00 4.70
1778 4858 1.689273 GAGATATGTTGGTCGCTCCCT 59.311 52.381 0.00 0.00 34.77 4.20
1779 4859 1.689273 AGATATGTTGGTCGCTCCCTC 59.311 52.381 0.00 0.00 34.77 4.30
1792 4872 1.000019 TCCCTCGATCGGTGGAAGT 60.000 57.895 23.18 0.00 0.00 3.01
1873 4953 0.296642 GCACCACTACGCGTATTTCG 59.703 55.000 20.91 10.61 43.12 3.46
1885 4965 2.536803 GCGTATTTCGGTCTTAATCGCA 59.463 45.455 0.00 0.00 40.63 5.10
1936 5019 1.227823 TGGACAAACGAGGTGCTGG 60.228 57.895 0.00 0.00 0.00 4.85
1946 5029 1.542375 AGGTGCTGGGGGTGAGATT 60.542 57.895 0.00 0.00 0.00 2.40
1948 5031 0.846693 GGTGCTGGGGGTGAGATTAT 59.153 55.000 0.00 0.00 0.00 1.28
1955 5054 3.716872 CTGGGGGTGAGATTATTGTAGGT 59.283 47.826 0.00 0.00 0.00 3.08
2081 5191 8.382875 GCAAGTGCATTCATATTCTTTAAAACC 58.617 33.333 0.00 0.00 41.59 3.27
2137 5252 0.544833 TTGGCAGCATGGGGATTTGT 60.545 50.000 0.00 0.00 35.86 2.83
2138 5253 0.334335 TGGCAGCATGGGGATTTGTA 59.666 50.000 0.00 0.00 35.86 2.41
2139 5254 1.063038 TGGCAGCATGGGGATTTGTAT 60.063 47.619 0.00 0.00 35.86 2.29
2140 5255 2.176581 TGGCAGCATGGGGATTTGTATA 59.823 45.455 0.00 0.00 35.86 1.47
2277 5392 1.302993 CGGGTGGATTCCAAACGGT 60.303 57.895 17.83 0.00 34.18 4.83
2335 5450 3.995332 GCACCGGCACAGGAATAACCT 62.995 57.143 0.00 0.00 44.99 3.50
2372 5487 1.537202 CTTCGTTGGGCTCTCTTTTGG 59.463 52.381 0.00 0.00 0.00 3.28
2400 5521 4.436523 CGTTGATTCGTTTGTTTTGGACTC 59.563 41.667 0.00 0.00 0.00 3.36
2403 5524 6.928979 TGATTCGTTTGTTTTGGACTCTTA 57.071 33.333 0.00 0.00 0.00 2.10
2404 5525 7.504924 TGATTCGTTTGTTTTGGACTCTTAT 57.495 32.000 0.00 0.00 0.00 1.73
2405 5526 7.581476 TGATTCGTTTGTTTTGGACTCTTATC 58.419 34.615 0.00 0.00 0.00 1.75
2408 5530 6.954944 TCGTTTGTTTTGGACTCTTATCAAG 58.045 36.000 0.00 0.00 0.00 3.02
2508 5630 2.936202 CCATGTAAGGGTGCTAATGCT 58.064 47.619 0.00 0.00 40.48 3.79
2606 5860 7.972832 TCTTAGTAACAATAATATTGGCGGG 57.027 36.000 16.36 1.97 0.00 6.13
2621 5875 2.249139 GGCGGGACTATACCAGAAGAT 58.751 52.381 0.00 0.00 0.00 2.40
2624 5878 3.057174 GCGGGACTATACCAGAAGATCTG 60.057 52.174 0.00 0.32 43.91 2.90
2652 5906 2.035961 ACACTGCAGAATCTGTACGTGT 59.964 45.455 23.35 20.91 35.57 4.49
2874 6129 6.475076 TGCTAGTTTGTTTTGTTAAGTGCATG 59.525 34.615 0.00 0.00 0.00 4.06
2880 6135 7.979115 TTGTTTTGTTAAGTGCATGTCTTAC 57.021 32.000 10.46 7.90 0.00 2.34
3023 6278 7.677454 TTATATGTGTTGATGAGGATGATGC 57.323 36.000 0.00 0.00 0.00 3.91
3151 6412 7.724305 TGTGAGTTTACATCTTACCTTTCAC 57.276 36.000 0.00 0.00 33.66 3.18
3199 6461 8.514136 TCTGTTTCTTTGTTTGTTAACTGTTG 57.486 30.769 7.22 0.00 35.24 3.33
3393 6729 7.710766 AGTCAGTTACTTACTTTTTCTTCGG 57.289 36.000 0.00 0.00 33.35 4.30
3498 7210 4.198530 TGCACAACATTTGTCTTCAGAGA 58.801 39.130 0.00 0.00 43.23 3.10
3604 7356 6.344500 ACACTATTCCATGTCTCTTGATGAC 58.656 40.000 0.00 0.00 35.21 3.06
3623 7375 4.684724 TGACACCTTCTGGTAGTAGGAAT 58.315 43.478 8.27 0.00 46.60 3.01
3624 7376 5.091552 TGACACCTTCTGGTAGTAGGAATT 58.908 41.667 8.27 0.00 46.60 2.17
3625 7377 5.046591 TGACACCTTCTGGTAGTAGGAATTG 60.047 44.000 8.27 0.27 46.60 2.32
3691 7443 3.074412 CCGCTGTGACTATGGTTTCTTT 58.926 45.455 0.00 0.00 0.00 2.52
3693 7445 4.378459 CCGCTGTGACTATGGTTTCTTTTC 60.378 45.833 0.00 0.00 0.00 2.29
3794 7546 2.735823 CAGTTGCTTTGCTTCTGAACC 58.264 47.619 8.07 0.00 34.28 3.62
3865 7617 9.570468 AGAGAACAATGCTATTGATGACATTAT 57.430 29.630 13.53 0.00 31.75 1.28
3897 7649 4.600692 AGTTTAACCCATTTGCTGTTCC 57.399 40.909 0.00 0.00 0.00 3.62
3956 7708 9.543018 GTTCTCTTTGTTACTTATCAATTTCCG 57.457 33.333 0.00 0.00 0.00 4.30
4015 7767 2.165234 GGACCAGTACCTCCGAAACTAC 59.835 54.545 0.00 0.00 0.00 2.73
4057 7809 5.244755 AGTGAGAAAGCCTCTTCATTCTTC 58.755 41.667 0.00 0.00 42.44 2.87
4187 7939 7.710044 TGCATTTGATTTTGTGTGACTTGTTAT 59.290 29.630 0.00 0.00 0.00 1.89
4188 7940 9.190858 GCATTTGATTTTGTGTGACTTGTTATA 57.809 29.630 0.00 0.00 0.00 0.98
4270 8022 1.376424 CAGCATCACCGCCTTCAGT 60.376 57.895 0.00 0.00 0.00 3.41
4277 8029 2.425592 CCGCCTTCAGTGTCACCA 59.574 61.111 0.00 0.00 0.00 4.17
4293 8045 4.080919 TGTCACCACCTTCATCAATAGGAG 60.081 45.833 0.00 0.00 35.45 3.69
4450 8202 6.998673 TCTGATGGATCAACTACTCGAGATAA 59.001 38.462 21.68 2.96 36.18 1.75
4478 8230 8.270030 ACCTCATCATCTCAGAAACATAATTCA 58.730 33.333 0.00 0.00 0.00 2.57
4517 8269 2.293122 TGCCGGATTTGTTCTTCTTGTG 59.707 45.455 5.05 0.00 0.00 3.33
4733 8485 3.312736 AACAGGGTGTTCTGGATTTGT 57.687 42.857 0.00 0.00 35.27 2.83
4845 8598 3.367395 GGTATGAAGCCCTTGAAACAAGC 60.367 47.826 6.04 0.00 0.00 4.01
5019 8772 4.675303 CCCTCCCCCTCCACCACA 62.675 72.222 0.00 0.00 0.00 4.17
5359 9119 6.440647 ACAATCCTAATGGAAGAGTGTCAGTA 59.559 38.462 0.00 0.00 46.80 2.74
5928 9688 6.540189 GGTGCTATGTCTCAAAACTGTGATAT 59.460 38.462 0.00 0.00 0.00 1.63
6054 9814 2.030007 TCAGCTTTGCTAATGTGGTTGC 60.030 45.455 0.00 0.00 36.40 4.17
6493 10261 6.933521 AGTAGCTGTTGATGCTTTATATCCTG 59.066 38.462 0.00 0.00 41.46 3.86
6524 10292 8.086143 ACCACAAATGAGTATACTTAGCCTTA 57.914 34.615 6.88 0.00 0.00 2.69
6591 10359 3.818210 TGTTATGTGCTCACGGATGTTTT 59.182 39.130 0.00 0.00 0.00 2.43
6833 10602 5.571784 TTCTTTCTGCATGGCATAAGAAG 57.428 39.130 18.65 14.60 40.57 2.85
7077 10849 2.840038 TGTTCTGATAGTGCCAGGATGT 59.160 45.455 0.00 0.00 32.73 3.06
7113 10885 2.505407 ACTATAGGTGATGCTTGCCACA 59.495 45.455 4.43 0.00 35.13 4.17
7274 11046 4.081972 TGAGGAATCAGAGTAACAGACAGC 60.082 45.833 0.00 0.00 0.00 4.40
7305 11077 3.087031 CACAGATCTCATGGGCAAAGTT 58.913 45.455 0.00 0.00 0.00 2.66
7405 11177 8.057536 AGAAGTATAGCTATTGATCCTTACCG 57.942 38.462 12.39 0.00 0.00 4.02
7484 11256 2.662866 ACATCATGCTTTCCAGATGGG 58.337 47.619 0.00 0.00 41.55 4.00
7512 11284 7.390440 TGTCTTAGACAGAACATTGGGTATTTG 59.610 37.037 11.42 0.00 37.67 2.32
7526 11298 6.095432 TGGGTATTTGGTGAACAGAAATTG 57.905 37.500 0.00 0.00 0.00 2.32
7528 11300 5.478407 GGTATTTGGTGAACAGAAATTGGG 58.522 41.667 0.00 0.00 0.00 4.12
7529 11301 4.622260 ATTTGGTGAACAGAAATTGGGG 57.378 40.909 0.00 0.00 0.00 4.96
7530 11302 1.337118 TGGTGAACAGAAATTGGGGC 58.663 50.000 0.00 0.00 0.00 5.80
7531 11303 0.243636 GGTGAACAGAAATTGGGGCG 59.756 55.000 0.00 0.00 0.00 6.13
7533 11305 0.825425 TGAACAGAAATTGGGGCGCA 60.825 50.000 10.83 0.00 0.00 6.09
7534 11306 0.109132 GAACAGAAATTGGGGCGCAG 60.109 55.000 10.83 0.00 0.00 5.18
7537 11309 0.602562 CAGAAATTGGGGCGCAGAAA 59.397 50.000 10.83 0.00 0.00 2.52
7538 11310 1.000731 CAGAAATTGGGGCGCAGAAAA 59.999 47.619 10.83 0.00 0.00 2.29
7539 11311 1.273327 AGAAATTGGGGCGCAGAAAAG 59.727 47.619 10.83 0.00 0.00 2.27
7542 11314 2.439553 ATTGGGGCGCAGAAAAGGGA 62.440 55.000 10.83 0.00 0.00 4.20
7543 11315 2.043953 GGGGCGCAGAAAAGGGAT 60.044 61.111 10.83 0.00 0.00 3.85
7546 11318 1.692411 GGGCGCAGAAAAGGGATAAT 58.308 50.000 10.83 0.00 0.00 1.28
7547 11319 2.488347 GGGGCGCAGAAAAGGGATAATA 60.488 50.000 10.83 0.00 0.00 0.98
7548 11320 3.421844 GGGCGCAGAAAAGGGATAATAT 58.578 45.455 10.83 0.00 0.00 1.28
7589 11362 3.437049 GGAACTGGATGTGAAACTGCTAC 59.563 47.826 0.00 0.00 38.04 3.58
7609 11382 3.362706 ACTGCAATGCCAAGATCATCTT 58.637 40.909 1.53 0.00 37.14 2.40
7610 11383 8.861834 GCTACTGCAATGCCAAGATCATCTTG 62.862 46.154 19.21 19.21 44.62 3.02
7620 11393 4.934797 AAGATCATCTTGGGTGAAGGAA 57.065 40.909 0.00 0.00 34.98 3.36
7635 11408 2.143876 AGGAATTTGGGGGAATGTCG 57.856 50.000 0.00 0.00 0.00 4.35
7643 11416 1.568118 GGGGGAATGTCGGGAAGGAA 61.568 60.000 0.00 0.00 0.00 3.36
7648 11421 3.494573 GGGAATGTCGGGAAGGAATAGAC 60.495 52.174 0.00 0.00 0.00 2.59
7656 11429 3.599348 GGGAAGGAATAGACCCCTACAT 58.401 50.000 0.00 0.00 36.65 2.29
7667 11440 4.610333 AGACCCCTACATGAAAATTTCCC 58.390 43.478 0.00 0.00 0.00 3.97
7681 11454 4.713792 AATTTCCCTATGTAGCCCTCTG 57.286 45.455 0.00 0.00 0.00 3.35
7709 11483 5.947228 AATGAACGAGCTTCTTGAATTCA 57.053 34.783 3.38 3.38 0.00 2.57
7710 11484 4.732285 TGAACGAGCTTCTTGAATTCAC 57.268 40.909 7.89 0.00 0.00 3.18
7747 11565 3.706698 TGCGTAGTGATTCTCTGTATGC 58.293 45.455 0.00 0.00 0.00 3.14
7785 11603 9.162764 GGATACAGTTTCTAGCATCTGTTTTTA 57.837 33.333 10.70 0.00 40.77 1.52
7786 11604 9.974750 GATACAGTTTCTAGCATCTGTTTTTAC 57.025 33.333 10.70 0.00 40.77 2.01
7789 11607 8.850156 ACAGTTTCTAGCATCTGTTTTTACATT 58.150 29.630 0.83 0.00 37.81 2.71
7790 11608 9.121517 CAGTTTCTAGCATCTGTTTTTACATTG 57.878 33.333 0.00 0.00 0.00 2.82
7793 11611 4.870123 AGCATCTGTTTTTACATTGCCA 57.130 36.364 0.00 0.00 32.48 4.92
7794 11612 5.410355 AGCATCTGTTTTTACATTGCCAT 57.590 34.783 0.00 0.00 32.48 4.40
7795 11613 5.797051 AGCATCTGTTTTTACATTGCCATT 58.203 33.333 0.00 0.00 32.48 3.16
7822 11640 4.083643 CCATCTCATTGTGTATCGCCATTC 60.084 45.833 0.00 0.00 0.00 2.67
7823 11641 3.123050 TCTCATTGTGTATCGCCATTCG 58.877 45.455 0.00 0.00 40.15 3.34
7824 11642 1.597195 TCATTGTGTATCGCCATTCGC 59.403 47.619 0.00 0.00 38.27 4.70
7825 11643 0.944386 ATTGTGTATCGCCATTCGCC 59.056 50.000 0.00 0.00 38.27 5.54
7826 11644 1.092921 TTGTGTATCGCCATTCGCCC 61.093 55.000 0.00 0.00 38.27 6.13
7829 11647 0.813610 TGTATCGCCATTCGCCCTTG 60.814 55.000 0.00 0.00 38.27 3.61
7831 11649 0.813610 TATCGCCATTCGCCCTTGTG 60.814 55.000 0.00 0.00 38.27 3.33
7832 11650 2.819984 ATCGCCATTCGCCCTTGTGT 62.820 55.000 0.00 0.00 38.27 3.72
7833 11651 2.877691 GCCATTCGCCCTTGTGTC 59.122 61.111 0.00 0.00 0.00 3.67
7834 11652 1.675641 GCCATTCGCCCTTGTGTCT 60.676 57.895 0.00 0.00 0.00 3.41
7836 11654 0.606401 CCATTCGCCCTTGTGTCTGT 60.606 55.000 0.00 0.00 0.00 3.41
7837 11655 1.238439 CATTCGCCCTTGTGTCTGTT 58.762 50.000 0.00 0.00 0.00 3.16
7839 11657 1.757682 TTCGCCCTTGTGTCTGTTTT 58.242 45.000 0.00 0.00 0.00 2.43
7840 11658 2.623878 TCGCCCTTGTGTCTGTTTTA 57.376 45.000 0.00 0.00 0.00 1.52
7841 11659 2.215196 TCGCCCTTGTGTCTGTTTTAC 58.785 47.619 0.00 0.00 0.00 2.01
7842 11660 1.265905 CGCCCTTGTGTCTGTTTTACC 59.734 52.381 0.00 0.00 0.00 2.85
7843 11661 2.303175 GCCCTTGTGTCTGTTTTACCA 58.697 47.619 0.00 0.00 0.00 3.25
7844 11662 2.691011 GCCCTTGTGTCTGTTTTACCAA 59.309 45.455 0.00 0.00 0.00 3.67
7846 11664 3.951680 CCCTTGTGTCTGTTTTACCAACT 59.048 43.478 0.00 0.00 0.00 3.16
7847 11665 4.036380 CCCTTGTGTCTGTTTTACCAACTC 59.964 45.833 0.00 0.00 0.00 3.01
7850 11668 6.431198 TTGTGTCTGTTTTACCAACTCTTC 57.569 37.500 0.00 0.00 0.00 2.87
7852 11670 6.177610 TGTGTCTGTTTTACCAACTCTTCTT 58.822 36.000 0.00 0.00 0.00 2.52
7853 11671 6.657541 TGTGTCTGTTTTACCAACTCTTCTTT 59.342 34.615 0.00 0.00 0.00 2.52
7854 11672 7.148306 TGTGTCTGTTTTACCAACTCTTCTTTC 60.148 37.037 0.00 0.00 0.00 2.62
7855 11673 6.317893 TGTCTGTTTTACCAACTCTTCTTTCC 59.682 38.462 0.00 0.00 0.00 3.13
7856 11674 5.826208 TCTGTTTTACCAACTCTTCTTTCCC 59.174 40.000 0.00 0.00 0.00 3.97
7857 11675 5.762279 TGTTTTACCAACTCTTCTTTCCCT 58.238 37.500 0.00 0.00 0.00 4.20
7858 11676 6.902408 TGTTTTACCAACTCTTCTTTCCCTA 58.098 36.000 0.00 0.00 0.00 3.53
7859 11677 6.996282 TGTTTTACCAACTCTTCTTTCCCTAG 59.004 38.462 0.00 0.00 0.00 3.02
7860 11678 7.147444 TGTTTTACCAACTCTTCTTTCCCTAGA 60.147 37.037 0.00 0.00 0.00 2.43
7861 11679 7.569599 TTTACCAACTCTTCTTTCCCTAGAT 57.430 36.000 0.00 0.00 0.00 1.98
7862 11680 7.569599 TTACCAACTCTTCTTTCCCTAGATT 57.430 36.000 0.00 0.00 0.00 2.40
7863 11681 8.674925 TTACCAACTCTTCTTTCCCTAGATTA 57.325 34.615 0.00 0.00 0.00 1.75
7864 11682 6.948589 ACCAACTCTTCTTTCCCTAGATTAC 58.051 40.000 0.00 0.00 0.00 1.89
7871 11689 6.381420 TCTTCTTTCCCTAGATTACTGTCTGG 59.619 42.308 0.00 0.00 0.00 3.86
7873 11691 6.023603 TCTTTCCCTAGATTACTGTCTGGTT 58.976 40.000 0.00 0.00 0.00 3.67
7907 11725 5.850278 TCTTTCCCTAGATTACAAGGAGGA 58.150 41.667 0.00 0.00 34.58 3.71
7911 11729 4.166725 TCCCTAGATTACAAGGAGGACGTA 59.833 45.833 0.00 0.00 34.58 3.57
7913 11731 5.539193 CCCTAGATTACAAGGAGGACGTAAT 59.461 44.000 0.00 0.00 38.27 1.89
7914 11732 6.041751 CCCTAGATTACAAGGAGGACGTAATT 59.958 42.308 0.00 0.00 36.28 1.40
7915 11733 6.924060 CCTAGATTACAAGGAGGACGTAATTG 59.076 42.308 0.00 0.00 36.28 2.32
7916 11734 6.540438 AGATTACAAGGAGGACGTAATTGA 57.460 37.500 0.00 0.00 36.28 2.57
7917 11735 6.942976 AGATTACAAGGAGGACGTAATTGAA 58.057 36.000 0.00 0.00 36.28 2.69
7918 11736 7.391620 AGATTACAAGGAGGACGTAATTGAAA 58.608 34.615 0.00 0.00 36.28 2.69
7919 11737 7.549488 AGATTACAAGGAGGACGTAATTGAAAG 59.451 37.037 0.00 0.00 36.28 2.62
7920 11738 5.223449 ACAAGGAGGACGTAATTGAAAGA 57.777 39.130 0.00 0.00 0.00 2.52
7921 11739 5.617252 ACAAGGAGGACGTAATTGAAAGAA 58.383 37.500 0.00 0.00 0.00 2.52
7922 11740 6.059484 ACAAGGAGGACGTAATTGAAAGAAA 58.941 36.000 0.00 0.00 0.00 2.52
7923 11741 6.715264 ACAAGGAGGACGTAATTGAAAGAAAT 59.285 34.615 0.00 0.00 0.00 2.17
7924 11742 7.881232 ACAAGGAGGACGTAATTGAAAGAAATA 59.119 33.333 0.00 0.00 0.00 1.40
7925 11743 8.893727 CAAGGAGGACGTAATTGAAAGAAATAT 58.106 33.333 0.00 0.00 0.00 1.28
7926 11744 9.462606 AAGGAGGACGTAATTGAAAGAAATATT 57.537 29.630 0.00 0.00 0.00 1.28
7927 11745 9.462606 AGGAGGACGTAATTGAAAGAAATATTT 57.537 29.630 0.00 0.00 0.00 1.40
7962 11780 9.346725 GTCTTGAAAGAAATATTAAGGTGCAAG 57.653 33.333 0.00 0.00 36.68 4.01
8045 11865 0.807496 GCCTAAACTCTGGCTTGCAG 59.193 55.000 0.00 0.00 45.26 4.41
8061 11884 6.152492 TGGCTTGCAGATATGATTTTAACACA 59.848 34.615 0.00 0.00 0.00 3.72
8074 11897 7.264221 TGATTTTAACACAAATGCAACTCACT 58.736 30.769 0.00 0.00 0.00 3.41
8076 11899 9.410556 GATTTTAACACAAATGCAACTCACTAT 57.589 29.630 0.00 0.00 0.00 2.12
8085 11908 5.980698 ATGCAACTCACTATGAATCTTCG 57.019 39.130 0.00 0.00 0.00 3.79
8177 12004 9.892130 TTTTTGTAAACCCATACTTGAAAATGT 57.108 25.926 0.00 0.00 0.00 2.71
8181 12008 8.962679 TGTAAACCCATACTTGAAAATGTATCC 58.037 33.333 0.00 0.00 0.00 2.59
8182 12009 7.418337 AAACCCATACTTGAAAATGTATCCC 57.582 36.000 0.00 0.00 0.00 3.85
8183 12010 6.086011 ACCCATACTTGAAAATGTATCCCA 57.914 37.500 0.00 0.00 0.00 4.37
8184 12011 5.891551 ACCCATACTTGAAAATGTATCCCAC 59.108 40.000 0.00 0.00 0.00 4.61
8185 12012 5.890985 CCCATACTTGAAAATGTATCCCACA 59.109 40.000 0.00 0.00 42.69 4.17
8186 12013 6.379703 CCCATACTTGAAAATGTATCCCACAA 59.620 38.462 0.00 0.00 41.55 3.33
8187 12014 7.257722 CCATACTTGAAAATGTATCCCACAAC 58.742 38.462 0.00 0.00 41.55 3.32
8188 12015 5.722021 ACTTGAAAATGTATCCCACAACC 57.278 39.130 0.00 0.00 41.55 3.77
8189 12016 5.393866 ACTTGAAAATGTATCCCACAACCT 58.606 37.500 0.00 0.00 41.55 3.50
8190 12017 5.838521 ACTTGAAAATGTATCCCACAACCTT 59.161 36.000 0.00 0.00 41.55 3.50
8191 12018 5.975693 TGAAAATGTATCCCACAACCTTC 57.024 39.130 0.00 0.00 41.55 3.46
8192 12019 5.640147 TGAAAATGTATCCCACAACCTTCT 58.360 37.500 0.00 0.00 41.55 2.85
8193 12020 5.476599 TGAAAATGTATCCCACAACCTTCTG 59.523 40.000 0.00 0.00 41.55 3.02
8194 12021 2.489938 TGTATCCCACAACCTTCTGC 57.510 50.000 0.00 0.00 32.95 4.26
8195 12022 1.004277 TGTATCCCACAACCTTCTGCC 59.996 52.381 0.00 0.00 32.95 4.85
8196 12023 0.623723 TATCCCACAACCTTCTGCCC 59.376 55.000 0.00 0.00 0.00 5.36
8197 12024 1.142688 ATCCCACAACCTTCTGCCCT 61.143 55.000 0.00 0.00 0.00 5.19
8198 12025 1.604593 CCCACAACCTTCTGCCCTG 60.605 63.158 0.00 0.00 0.00 4.45
8199 12026 2.270986 CCACAACCTTCTGCCCTGC 61.271 63.158 0.00 0.00 0.00 4.85
8200 12027 2.116125 ACAACCTTCTGCCCTGCC 59.884 61.111 0.00 0.00 0.00 4.85
8201 12028 2.677875 CAACCTTCTGCCCTGCCC 60.678 66.667 0.00 0.00 0.00 5.36
8202 12029 3.984732 AACCTTCTGCCCTGCCCC 61.985 66.667 0.00 0.00 0.00 5.80
8205 12032 4.785453 CTTCTGCCCTGCCCCGAC 62.785 72.222 0.00 0.00 0.00 4.79
8212 12039 3.151710 CCTGCCCCGACCGTCATA 61.152 66.667 0.00 0.00 0.00 2.15
8213 12040 2.106332 CTGCCCCGACCGTCATAC 59.894 66.667 0.00 0.00 0.00 2.39
8214 12041 2.680707 TGCCCCGACCGTCATACA 60.681 61.111 0.00 0.00 0.00 2.29
8215 12042 2.106332 GCCCCGACCGTCATACAG 59.894 66.667 0.00 0.00 0.00 2.74
8216 12043 2.812499 CCCCGACCGTCATACAGG 59.188 66.667 0.00 0.00 0.00 4.00
8217 12044 1.755395 CCCCGACCGTCATACAGGA 60.755 63.158 0.00 0.00 0.00 3.86
8218 12045 1.324740 CCCCGACCGTCATACAGGAA 61.325 60.000 0.00 0.00 0.00 3.36
8219 12046 0.533491 CCCGACCGTCATACAGGAAA 59.467 55.000 0.00 0.00 0.00 3.13
8220 12047 1.636988 CCGACCGTCATACAGGAAAC 58.363 55.000 0.00 0.00 0.00 2.78
8221 12048 1.636988 CGACCGTCATACAGGAAACC 58.363 55.000 0.00 0.00 0.00 3.27
8222 12049 1.067425 CGACCGTCATACAGGAAACCA 60.067 52.381 0.00 0.00 0.00 3.67
8223 12050 2.610976 CGACCGTCATACAGGAAACCAA 60.611 50.000 0.00 0.00 0.00 3.67
8224 12051 3.606687 GACCGTCATACAGGAAACCAAT 58.393 45.455 0.00 0.00 0.00 3.16
8225 12052 3.606687 ACCGTCATACAGGAAACCAATC 58.393 45.455 0.00 0.00 0.00 2.67
8226 12053 3.008594 ACCGTCATACAGGAAACCAATCA 59.991 43.478 0.00 0.00 0.00 2.57
8227 12054 3.374058 CCGTCATACAGGAAACCAATCAC 59.626 47.826 0.00 0.00 0.00 3.06
8228 12055 3.374058 CGTCATACAGGAAACCAATCACC 59.626 47.826 0.00 0.00 0.00 4.02
8229 12056 4.331968 GTCATACAGGAAACCAATCACCA 58.668 43.478 0.00 0.00 0.00 4.17
8230 12057 4.764823 GTCATACAGGAAACCAATCACCAA 59.235 41.667 0.00 0.00 0.00 3.67
8231 12058 5.009631 TCATACAGGAAACCAATCACCAAG 58.990 41.667 0.00 0.00 0.00 3.61
8232 12059 3.312736 ACAGGAAACCAATCACCAAGT 57.687 42.857 0.00 0.00 0.00 3.16
8233 12060 3.642141 ACAGGAAACCAATCACCAAGTT 58.358 40.909 0.00 0.00 0.00 2.66
8234 12061 3.384467 ACAGGAAACCAATCACCAAGTTG 59.616 43.478 0.00 0.00 0.00 3.16
8247 12074 3.742433 CCAAGTTGGTGCCATTTTACA 57.258 42.857 14.21 0.00 31.35 2.41
8248 12075 4.065321 CCAAGTTGGTGCCATTTTACAA 57.935 40.909 14.21 0.00 31.35 2.41
8249 12076 4.446371 CCAAGTTGGTGCCATTTTACAAA 58.554 39.130 14.21 0.00 31.35 2.83
8250 12077 4.272261 CCAAGTTGGTGCCATTTTACAAAC 59.728 41.667 14.21 0.00 32.17 2.93
8251 12078 4.066646 AGTTGGTGCCATTTTACAAACC 57.933 40.909 0.00 0.00 32.36 3.27
8252 12079 3.135225 GTTGGTGCCATTTTACAAACCC 58.865 45.455 0.00 0.00 0.00 4.11
8253 12080 2.398588 TGGTGCCATTTTACAAACCCA 58.601 42.857 0.00 0.00 0.00 4.51
8254 12081 2.771943 TGGTGCCATTTTACAAACCCAA 59.228 40.909 0.00 0.00 0.00 4.12
8255 12082 3.199946 TGGTGCCATTTTACAAACCCAAA 59.800 39.130 0.00 0.00 0.00 3.28
8256 12083 3.562141 GGTGCCATTTTACAAACCCAAAC 59.438 43.478 0.00 0.00 0.00 2.93
8257 12084 4.447290 GTGCCATTTTACAAACCCAAACT 58.553 39.130 0.00 0.00 0.00 2.66
8258 12085 4.272261 GTGCCATTTTACAAACCCAAACTG 59.728 41.667 0.00 0.00 0.00 3.16
8259 12086 4.080863 TGCCATTTTACAAACCCAAACTGT 60.081 37.500 0.00 0.00 0.00 3.55
8260 12087 4.509970 GCCATTTTACAAACCCAAACTGTC 59.490 41.667 0.00 0.00 0.00 3.51
8261 12088 4.742659 CCATTTTACAAACCCAAACTGTCG 59.257 41.667 0.00 0.00 0.00 4.35
8262 12089 5.450688 CCATTTTACAAACCCAAACTGTCGA 60.451 40.000 0.00 0.00 0.00 4.20
8263 12090 5.640189 TTTTACAAACCCAAACTGTCGAA 57.360 34.783 0.00 0.00 0.00 3.71
8264 12091 5.838531 TTTACAAACCCAAACTGTCGAAT 57.161 34.783 0.00 0.00 0.00 3.34
8265 12092 5.838531 TTACAAACCCAAACTGTCGAATT 57.161 34.783 0.00 0.00 0.00 2.17
8266 12093 4.040445 ACAAACCCAAACTGTCGAATTG 57.960 40.909 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.442364 AGAAAAATCGTGACCAGATATACCATG 59.558 37.037 0.00 0.00 0.00 3.66
1 2 7.509546 AGAAAAATCGTGACCAGATATACCAT 58.490 34.615 0.00 0.00 0.00 3.55
2 3 6.884832 AGAAAAATCGTGACCAGATATACCA 58.115 36.000 0.00 0.00 0.00 3.25
3 4 6.984474 TGAGAAAAATCGTGACCAGATATACC 59.016 38.462 0.00 0.00 0.00 2.73
4 5 8.420374 TTGAGAAAAATCGTGACCAGATATAC 57.580 34.615 0.00 0.00 0.00 1.47
5 6 9.443323 TTTTGAGAAAAATCGTGACCAGATATA 57.557 29.630 0.00 0.00 0.00 0.86
6 7 7.921786 TTTGAGAAAAATCGTGACCAGATAT 57.078 32.000 0.00 0.00 0.00 1.63
7 8 7.737972 TTTTGAGAAAAATCGTGACCAGATA 57.262 32.000 0.00 0.00 0.00 1.98
8 9 6.633500 TTTTGAGAAAAATCGTGACCAGAT 57.367 33.333 0.00 0.00 0.00 2.90
9 10 6.317642 TCTTTTTGAGAAAAATCGTGACCAGA 59.682 34.615 0.00 0.00 39.43 3.86
10 11 6.494842 TCTTTTTGAGAAAAATCGTGACCAG 58.505 36.000 0.00 0.00 39.43 4.00
11 12 6.443934 TCTTTTTGAGAAAAATCGTGACCA 57.556 33.333 0.00 0.00 39.43 4.02
12 13 7.138736 TGATCTTTTTGAGAAAAATCGTGACC 58.861 34.615 0.00 0.00 39.43 4.02
13 14 8.733857 ATGATCTTTTTGAGAAAAATCGTGAC 57.266 30.769 0.00 0.00 39.43 3.67
14 15 8.023128 GGATGATCTTTTTGAGAAAAATCGTGA 58.977 33.333 0.00 0.00 39.43 4.35
15 16 7.007725 CGGATGATCTTTTTGAGAAAAATCGTG 59.992 37.037 0.00 0.00 39.43 4.35
16 17 7.023575 CGGATGATCTTTTTGAGAAAAATCGT 58.976 34.615 0.00 0.00 39.43 3.73
17 18 6.470235 CCGGATGATCTTTTTGAGAAAAATCG 59.530 38.462 0.00 0.00 39.43 3.34
18 19 7.315890 ACCGGATGATCTTTTTGAGAAAAATC 58.684 34.615 9.46 0.00 39.43 2.17
19 20 7.232118 ACCGGATGATCTTTTTGAGAAAAAT 57.768 32.000 9.46 0.00 39.43 1.82
20 21 6.567701 CGACCGGATGATCTTTTTGAGAAAAA 60.568 38.462 9.46 0.00 38.06 1.94
21 22 5.106712 CGACCGGATGATCTTTTTGAGAAAA 60.107 40.000 9.46 0.00 38.06 2.29
22 23 4.391830 CGACCGGATGATCTTTTTGAGAAA 59.608 41.667 9.46 0.00 38.06 2.52
23 24 3.932710 CGACCGGATGATCTTTTTGAGAA 59.067 43.478 9.46 0.00 38.06 2.87
24 25 3.521560 CGACCGGATGATCTTTTTGAGA 58.478 45.455 9.46 0.00 39.13 3.27
25 26 2.030946 GCGACCGGATGATCTTTTTGAG 59.969 50.000 9.46 0.00 0.00 3.02
26 27 2.006888 GCGACCGGATGATCTTTTTGA 58.993 47.619 9.46 0.00 0.00 2.69
27 28 1.267532 CGCGACCGGATGATCTTTTTG 60.268 52.381 9.46 0.00 0.00 2.44
28 29 1.006832 CGCGACCGGATGATCTTTTT 58.993 50.000 9.46 0.00 0.00 1.94
29 30 0.174845 TCGCGACCGGATGATCTTTT 59.825 50.000 9.46 0.00 34.56 2.27
30 31 0.527817 GTCGCGACCGGATGATCTTT 60.528 55.000 28.61 0.00 34.56 2.52
31 32 1.065928 GTCGCGACCGGATGATCTT 59.934 57.895 28.61 0.00 34.56 2.40
32 33 1.824329 AGTCGCGACCGGATGATCT 60.824 57.895 34.08 10.90 34.56 2.75
33 34 1.658717 CAGTCGCGACCGGATGATC 60.659 63.158 34.08 7.59 34.56 2.92
34 35 2.413351 CAGTCGCGACCGGATGAT 59.587 61.111 34.08 12.49 34.56 2.45
35 36 3.822192 CCAGTCGCGACCGGATGA 61.822 66.667 33.13 0.00 30.39 2.92
36 37 2.829043 TTTCCAGTCGCGACCGGATG 62.829 60.000 37.28 27.03 37.69 3.51
37 38 2.642254 TTTCCAGTCGCGACCGGAT 61.642 57.895 37.28 18.18 37.69 4.18
38 39 3.296836 TTTCCAGTCGCGACCGGA 61.297 61.111 34.58 34.58 36.18 5.14
39 40 3.110178 GTTTCCAGTCGCGACCGG 61.110 66.667 31.34 31.34 34.56 5.28
40 41 2.355363 TGTTTCCAGTCGCGACCG 60.355 61.111 34.08 25.09 0.00 4.79
41 42 2.654912 CGTGTTTCCAGTCGCGACC 61.655 63.158 34.08 18.70 39.45 4.79
42 43 1.606350 CTCGTGTTTCCAGTCGCGAC 61.606 60.000 31.30 31.30 40.69 5.19
43 44 1.371267 CTCGTGTTTCCAGTCGCGA 60.371 57.895 3.71 3.71 42.72 5.87
44 45 3.000080 GCTCGTGTTTCCAGTCGCG 62.000 63.158 0.00 0.00 38.63 5.87
45 46 1.495584 TTGCTCGTGTTTCCAGTCGC 61.496 55.000 0.00 0.00 0.00 5.19
46 47 0.934496 TTTGCTCGTGTTTCCAGTCG 59.066 50.000 0.00 0.00 0.00 4.18
47 48 3.626028 AATTTGCTCGTGTTTCCAGTC 57.374 42.857 0.00 0.00 0.00 3.51
48 49 5.508200 TTTAATTTGCTCGTGTTTCCAGT 57.492 34.783 0.00 0.00 0.00 4.00
49 50 7.081349 TGTATTTAATTTGCTCGTGTTTCCAG 58.919 34.615 0.00 0.00 0.00 3.86
50 51 6.971602 TGTATTTAATTTGCTCGTGTTTCCA 58.028 32.000 0.00 0.00 0.00 3.53
51 52 7.593644 AGTTGTATTTAATTTGCTCGTGTTTCC 59.406 33.333 0.00 0.00 0.00 3.13
52 53 8.502161 AGTTGTATTTAATTTGCTCGTGTTTC 57.498 30.769 0.00 0.00 0.00 2.78
53 54 8.751335 CAAGTTGTATTTAATTTGCTCGTGTTT 58.249 29.630 0.00 0.00 0.00 2.83
54 55 7.381139 CCAAGTTGTATTTAATTTGCTCGTGTT 59.619 33.333 1.45 0.00 0.00 3.32
55 56 6.861055 CCAAGTTGTATTTAATTTGCTCGTGT 59.139 34.615 1.45 0.00 0.00 4.49
56 57 6.307800 CCCAAGTTGTATTTAATTTGCTCGTG 59.692 38.462 1.45 0.00 0.00 4.35
57 58 6.015772 ACCCAAGTTGTATTTAATTTGCTCGT 60.016 34.615 1.45 0.00 0.00 4.18
58 59 6.386654 ACCCAAGTTGTATTTAATTTGCTCG 58.613 36.000 1.45 0.00 0.00 5.03
59 60 7.061789 CGAACCCAAGTTGTATTTAATTTGCTC 59.938 37.037 1.45 0.00 35.94 4.26
60 61 6.866248 CGAACCCAAGTTGTATTTAATTTGCT 59.134 34.615 1.45 0.00 35.94 3.91
61 62 6.643360 ACGAACCCAAGTTGTATTTAATTTGC 59.357 34.615 1.45 0.00 35.94 3.68
62 63 7.650104 ACACGAACCCAAGTTGTATTTAATTTG 59.350 33.333 1.45 0.00 35.94 2.32
63 64 7.718525 ACACGAACCCAAGTTGTATTTAATTT 58.281 30.769 1.45 0.00 35.94 1.82
64 65 7.279750 ACACGAACCCAAGTTGTATTTAATT 57.720 32.000 1.45 0.00 35.94 1.40
65 66 6.887626 ACACGAACCCAAGTTGTATTTAAT 57.112 33.333 1.45 0.00 35.94 1.40
66 67 6.696441 AACACGAACCCAAGTTGTATTTAA 57.304 33.333 1.45 0.00 35.94 1.52
67 68 6.511444 CGAAACACGAACCCAAGTTGTATTTA 60.511 38.462 1.45 0.00 45.77 1.40
68 69 5.584442 GAAACACGAACCCAAGTTGTATTT 58.416 37.500 1.45 0.00 35.94 1.40
69 70 4.260866 CGAAACACGAACCCAAGTTGTATT 60.261 41.667 1.45 0.00 45.77 1.89
70 71 3.249080 CGAAACACGAACCCAAGTTGTAT 59.751 43.478 1.45 0.00 45.77 2.29
71 72 2.608546 CGAAACACGAACCCAAGTTGTA 59.391 45.455 1.45 0.00 45.77 2.41
72 73 1.399089 CGAAACACGAACCCAAGTTGT 59.601 47.619 1.45 0.00 45.77 3.32
73 74 1.399089 ACGAAACACGAACCCAAGTTG 59.601 47.619 0.00 0.00 45.77 3.16
74 75 1.399089 CACGAAACACGAACCCAAGTT 59.601 47.619 0.00 0.00 45.77 2.66
75 76 1.011333 CACGAAACACGAACCCAAGT 58.989 50.000 0.00 0.00 45.77 3.16
76 77 1.011333 ACACGAAACACGAACCCAAG 58.989 50.000 0.00 0.00 45.77 3.61
77 78 2.203401 CTACACGAAACACGAACCCAA 58.797 47.619 0.00 0.00 45.77 4.12
78 79 1.855513 CTACACGAAACACGAACCCA 58.144 50.000 0.00 0.00 45.77 4.51
79 80 0.509929 GCTACACGAAACACGAACCC 59.490 55.000 0.00 0.00 45.77 4.11
80 81 1.210870 TGCTACACGAAACACGAACC 58.789 50.000 0.00 0.00 45.77 3.62
81 82 2.887733 CTTGCTACACGAAACACGAAC 58.112 47.619 0.00 0.00 45.77 3.95
82 83 1.259507 GCTTGCTACACGAAACACGAA 59.740 47.619 0.00 0.00 45.77 3.85
83 84 0.856641 GCTTGCTACACGAAACACGA 59.143 50.000 0.00 0.00 45.77 4.35
85 86 0.721483 GCGCTTGCTACACGAAACAC 60.721 55.000 0.00 0.00 35.07 3.32
86 87 1.567537 GCGCTTGCTACACGAAACA 59.432 52.632 0.00 0.00 35.07 2.83
87 88 1.507096 CGCGCTTGCTACACGAAAC 60.507 57.895 5.56 0.00 36.08 2.78
88 89 2.850404 CGCGCTTGCTACACGAAA 59.150 55.556 5.56 0.00 36.08 3.46
89 90 3.773630 GCGCGCTTGCTACACGAA 61.774 61.111 26.67 0.00 36.08 3.85
90 91 4.717629 AGCGCGCTTGCTACACGA 62.718 61.111 31.32 0.00 45.14 4.35
91 92 3.777925 AAGCGCGCTTGCTACACG 61.778 61.111 42.62 0.00 46.60 4.49
99 100 1.375853 TTCATATGGCAAGCGCGCTT 61.376 50.000 38.88 38.88 39.92 4.68
100 101 1.168407 ATTCATATGGCAAGCGCGCT 61.168 50.000 31.32 31.32 39.92 5.92
101 102 0.516877 TATTCATATGGCAAGCGCGC 59.483 50.000 26.66 26.66 39.92 6.86
102 103 2.777494 CATATTCATATGGCAAGCGCG 58.223 47.619 0.00 0.00 39.92 6.86
103 104 2.163010 AGCATATTCATATGGCAAGCGC 59.837 45.455 0.00 0.00 40.31 5.92
104 105 4.495349 GCTAGCATATTCATATGGCAAGCG 60.495 45.833 10.63 0.00 40.31 4.68
105 106 4.495349 CGCTAGCATATTCATATGGCAAGC 60.495 45.833 16.45 1.78 40.31 4.01
110 111 6.591448 TCTTCAACGCTAGCATATTCATATGG 59.409 38.462 16.45 0.00 40.31 2.74
139 140 4.095334 TGATTCACAGTGCTGCAATACATC 59.905 41.667 2.77 3.71 0.00 3.06
146 147 3.678289 ACTATTGATTCACAGTGCTGCA 58.322 40.909 0.00 0.00 0.00 4.41
147 148 4.691860 AACTATTGATTCACAGTGCTGC 57.308 40.909 0.00 0.00 0.00 5.25
148 149 6.537566 GTGTAACTATTGATTCACAGTGCTG 58.462 40.000 0.00 0.00 0.00 4.41
149 150 6.727824 GTGTAACTATTGATTCACAGTGCT 57.272 37.500 0.00 0.00 0.00 4.40
168 170 2.787601 AGTCGAGCGAAAACAGTGTA 57.212 45.000 0.00 0.00 0.00 2.90
172 174 5.401674 ACTTAAACTAGTCGAGCGAAAACAG 59.598 40.000 0.00 0.00 0.00 3.16
173 175 5.284079 ACTTAAACTAGTCGAGCGAAAACA 58.716 37.500 0.00 0.00 0.00 2.83
175 177 5.750067 ACAACTTAAACTAGTCGAGCGAAAA 59.250 36.000 0.00 0.00 0.00 2.29
180 182 6.089150 CCACTAACAACTTAAACTAGTCGAGC 59.911 42.308 0.00 0.00 0.00 5.03
183 185 6.698766 ACACCACTAACAACTTAAACTAGTCG 59.301 38.462 0.00 0.00 0.00 4.18
234 236 4.794169 AGCACGCATCGATTAAACTTTTT 58.206 34.783 0.00 0.00 0.00 1.94
235 237 4.403453 GAGCACGCATCGATTAAACTTTT 58.597 39.130 0.00 0.00 0.00 2.27
236 238 3.483574 CGAGCACGCATCGATTAAACTTT 60.484 43.478 0.00 0.00 42.76 2.66
238 240 1.588404 CGAGCACGCATCGATTAAACT 59.412 47.619 0.00 0.00 42.76 2.66
240 242 1.915952 TCGAGCACGCATCGATTAAA 58.084 45.000 0.00 0.00 43.79 1.52
241 243 3.633573 TCGAGCACGCATCGATTAA 57.366 47.368 0.00 0.00 43.79 1.40
247 249 0.867753 CCACTAGTCGAGCACGCATC 60.868 60.000 0.00 0.00 39.58 3.91
249 251 1.969589 TCCACTAGTCGAGCACGCA 60.970 57.895 0.00 0.00 39.58 5.24
250 252 1.514443 GTCCACTAGTCGAGCACGC 60.514 63.158 0.00 0.00 39.58 5.34
251 253 0.452184 ATGTCCACTAGTCGAGCACG 59.548 55.000 0.00 0.00 41.26 5.34
253 255 0.173481 GCATGTCCACTAGTCGAGCA 59.827 55.000 0.00 0.00 0.00 4.26
254 256 0.528684 GGCATGTCCACTAGTCGAGC 60.529 60.000 0.00 0.00 34.01 5.03
255 257 0.248661 CGGCATGTCCACTAGTCGAG 60.249 60.000 0.00 0.00 34.01 4.04
256 258 1.807226 CGGCATGTCCACTAGTCGA 59.193 57.895 0.00 0.00 34.01 4.20
258 260 1.878522 CGCGGCATGTCCACTAGTC 60.879 63.158 0.00 0.00 34.01 2.59
259 261 2.184322 CGCGGCATGTCCACTAGT 59.816 61.111 0.00 0.00 34.01 2.57
261 263 4.830765 GCCGCGGCATGTCCACTA 62.831 66.667 43.55 0.00 41.49 2.74
276 278 4.247380 CTGCCCTCTCCGGATGCC 62.247 72.222 3.57 0.00 33.16 4.40
277 279 4.247380 CCTGCCCTCTCCGGATGC 62.247 72.222 3.57 6.53 33.16 3.91
283 285 3.883549 GATGCCCCTGCCCTCTCC 61.884 72.222 0.00 0.00 36.33 3.71
284 286 3.883549 GGATGCCCCTGCCCTCTC 61.884 72.222 0.00 0.00 36.33 3.20
305 307 2.202932 CTCATCCTTCCGGCCGTG 60.203 66.667 26.12 14.87 0.00 4.94
308 310 4.918201 CCGCTCATCCTTCCGGCC 62.918 72.222 0.00 0.00 33.77 6.13
310 312 0.177141 TTTACCGCTCATCCTTCCGG 59.823 55.000 0.00 0.00 45.80 5.14
311 313 2.018542 TTTTACCGCTCATCCTTCCG 57.981 50.000 0.00 0.00 0.00 4.30
312 314 4.448210 TGTATTTTACCGCTCATCCTTCC 58.552 43.478 0.00 0.00 0.00 3.46
314 316 5.497474 ACTTGTATTTTACCGCTCATCCTT 58.503 37.500 0.00 0.00 0.00 3.36
317 319 4.025979 CCGACTTGTATTTTACCGCTCATC 60.026 45.833 0.00 0.00 0.00 2.92
318 320 3.869246 CCGACTTGTATTTTACCGCTCAT 59.131 43.478 0.00 0.00 0.00 2.90
319 321 3.255725 CCGACTTGTATTTTACCGCTCA 58.744 45.455 0.00 0.00 0.00 4.26
320 322 2.030091 GCCGACTTGTATTTTACCGCTC 59.970 50.000 0.00 0.00 0.00 5.03
321 323 2.004733 GCCGACTTGTATTTTACCGCT 58.995 47.619 0.00 0.00 0.00 5.52
323 325 3.302221 CGATGCCGACTTGTATTTTACCG 60.302 47.826 0.00 0.00 38.22 4.02
324 326 3.619929 ACGATGCCGACTTGTATTTTACC 59.380 43.478 0.00 0.00 39.50 2.85
326 328 4.247258 ACACGATGCCGACTTGTATTTTA 58.753 39.130 0.00 0.00 39.50 1.52
327 329 3.071479 ACACGATGCCGACTTGTATTTT 58.929 40.909 0.00 0.00 39.50 1.82
328 330 2.695359 ACACGATGCCGACTTGTATTT 58.305 42.857 0.00 0.00 39.50 1.40
329 331 2.380084 ACACGATGCCGACTTGTATT 57.620 45.000 0.00 0.00 39.50 1.89
331 333 1.424403 CAACACGATGCCGACTTGTA 58.576 50.000 0.00 0.00 39.50 2.41
332 334 1.841663 GCAACACGATGCCGACTTGT 61.842 55.000 0.00 0.00 40.49 3.16
335 2186 2.029288 CTGCAACACGATGCCGACT 61.029 57.895 9.41 0.00 45.83 4.18
351 2202 2.168621 CGACGACGTTGCTTGCTG 59.831 61.111 0.13 0.00 34.56 4.41
397 3249 1.665442 CCGTTTTGGCCTTTGGAGG 59.335 57.895 3.32 0.00 46.50 4.30
398 3250 1.665442 CCCGTTTTGGCCTTTGGAG 59.335 57.895 3.32 0.00 35.87 3.86
424 3282 1.453928 GGGTGGGCATAGCTGGTTC 60.454 63.158 0.00 0.00 0.00 3.62
437 3295 3.977244 GCGGCAGTTTGTGGGTGG 61.977 66.667 0.00 0.00 0.00 4.61
438 3296 2.682256 CTTGCGGCAGTTTGTGGGTG 62.682 60.000 1.67 0.00 0.00 4.61
439 3297 2.441164 TTGCGGCAGTTTGTGGGT 60.441 55.556 1.67 0.00 0.00 4.51
449 3307 0.744414 GCCTCTGTATTCTTGCGGCA 60.744 55.000 0.00 0.00 36.16 5.69
457 3315 1.281899 GCTGTCGTGCCTCTGTATTC 58.718 55.000 0.00 0.00 0.00 1.75
535 3417 1.080025 GTGACGTGGTGGAGCTACC 60.080 63.158 0.00 0.00 41.24 3.18
536 3418 0.109226 GAGTGACGTGGTGGAGCTAC 60.109 60.000 0.00 0.00 0.00 3.58
537 3419 0.538746 TGAGTGACGTGGTGGAGCTA 60.539 55.000 0.00 0.00 0.00 3.32
538 3420 1.832608 TGAGTGACGTGGTGGAGCT 60.833 57.895 0.00 0.00 0.00 4.09
539 3421 1.664965 GTGAGTGACGTGGTGGAGC 60.665 63.158 0.00 0.00 0.00 4.70
540 3422 1.006102 GGTGAGTGACGTGGTGGAG 60.006 63.158 0.00 0.00 0.00 3.86
570 3452 4.660611 TACGTTGGGGGCCAGGGA 62.661 66.667 4.39 0.00 33.81 4.20
579 3461 3.124270 TGCATGCGCTACGTTGGG 61.124 61.111 14.09 9.60 39.64 4.12
645 3527 1.926511 GAAATGCGTGCTGGACTGGG 61.927 60.000 0.00 0.00 0.00 4.45
656 3543 1.517832 CGAGGAGGAGGAAATGCGT 59.482 57.895 0.00 0.00 0.00 5.24
707 3601 2.695359 ACAGCGGGCGTATAATAATGG 58.305 47.619 0.00 0.00 0.00 3.16
708 3602 3.666902 GCAACAGCGGGCGTATAATAATG 60.667 47.826 0.00 0.00 0.00 1.90
784 3683 1.003355 GGACCAGCAGCAGCAAGTA 60.003 57.895 3.17 0.00 45.49 2.24
797 3696 2.915659 AGAAGTGGACGCGGACCA 60.916 61.111 20.18 20.18 34.84 4.02
798 3697 2.126031 GAGAAGTGGACGCGGACC 60.126 66.667 12.47 14.52 0.00 4.46
799 3698 2.126031 GGAGAAGTGGACGCGGAC 60.126 66.667 12.47 3.78 0.00 4.79
800 3699 3.744719 CGGAGAAGTGGACGCGGA 61.745 66.667 12.47 0.00 0.00 5.54
885 3844 2.308344 CGAGAGCACGATCGGAGTA 58.692 57.895 20.98 0.00 35.33 2.59
948 3925 4.980805 TGAGCCGCCGTGTTGGTC 62.981 66.667 0.00 0.00 41.21 4.02
949 3926 4.988598 CTGAGCCGCCGTGTTGGT 62.989 66.667 0.00 0.00 41.21 3.67
973 3950 1.674519 CCGACAATTCACACCATCCGA 60.675 52.381 0.00 0.00 0.00 4.55
1133 4119 0.106419 AGGGCTAACGAGAGGAGGAG 60.106 60.000 0.00 0.00 0.00 3.69
1219 4247 2.149973 AATCAATCCCCTGCTTCCAC 57.850 50.000 0.00 0.00 0.00 4.02
1220 4248 2.624029 GGAAATCAATCCCCTGCTTCCA 60.624 50.000 0.00 0.00 32.43 3.53
1278 4310 2.416260 GTAGATGACGGGGGTCGC 59.584 66.667 0.00 0.00 43.89 5.19
1300 4332 0.037046 GGAGTAAAAACCCGCGGAGA 60.037 55.000 30.73 1.04 0.00 3.71
1301 4333 1.356527 CGGAGTAAAAACCCGCGGAG 61.357 60.000 30.73 19.69 36.62 4.63
1424 4462 1.136774 CGTCTGTGCGCTAGCTGTA 59.863 57.895 13.93 3.16 45.42 2.74
1547 4621 2.032634 GTTGCCGCATCCGAGACAA 61.033 57.895 0.00 0.00 36.29 3.18
1593 4667 1.663643 CCGAATTACACATGTCACGGG 59.336 52.381 0.00 0.00 36.27 5.28
1597 4671 3.453424 CCGATCCGAATTACACATGTCA 58.547 45.455 0.00 0.00 0.00 3.58
1619 4693 5.452078 TGGAAAGCCAGTAAAAACATCAG 57.548 39.130 0.00 0.00 39.92 2.90
1776 4856 0.530744 TCAACTTCCACCGATCGAGG 59.469 55.000 18.66 17.85 37.30 4.63
1778 4858 1.616865 ACTTCAACTTCCACCGATCGA 59.383 47.619 18.66 0.00 0.00 3.59
1779 4859 2.080286 ACTTCAACTTCCACCGATCG 57.920 50.000 8.51 8.51 0.00 3.69
1792 4872 2.827322 CCCTTCATGGCATCAACTTCAA 59.173 45.455 0.00 0.00 0.00 2.69
1844 4924 3.429543 CGCGTAGTGGTGCTACTTTAAAA 59.570 43.478 0.00 0.00 45.97 1.52
1848 4928 0.316204 ACGCGTAGTGGTGCTACTTT 59.684 50.000 11.67 0.00 45.97 2.66
1853 4933 1.636988 GAAATACGCGTAGTGGTGCT 58.363 50.000 24.78 6.32 45.78 4.40
1861 4941 3.968096 CGATTAAGACCGAAATACGCGTA 59.032 43.478 22.94 22.94 41.07 4.42
1885 4965 6.093219 GCAGATTCATCGATATGGCAATTACT 59.907 38.462 0.00 0.00 33.61 2.24
1936 5019 6.681729 TGATACCTACAATAATCTCACCCC 57.318 41.667 0.00 0.00 0.00 4.95
1946 5029 9.613428 CTTGGATCACTTTTGATACCTACAATA 57.387 33.333 0.00 0.00 41.99 1.90
1948 5031 7.458397 ACTTGGATCACTTTTGATACCTACAA 58.542 34.615 0.00 0.00 41.99 2.41
1955 5054 6.932400 ACGTGTTACTTGGATCACTTTTGATA 59.068 34.615 0.00 0.00 42.95 2.15
2010 5109 6.038271 CCACCCACATTTATACTAAACAGAGC 59.962 42.308 0.00 0.00 0.00 4.09
2069 5179 2.525368 AGGCAGCGGGTTTTAAAGAAT 58.475 42.857 0.00 0.00 0.00 2.40
2292 5407 0.474854 TAACTCCCTGCCAACCCTCA 60.475 55.000 0.00 0.00 0.00 3.86
2328 5443 3.891366 GCCTGCCATACATTGAGGTTATT 59.109 43.478 0.00 0.00 0.00 1.40
2335 5450 2.742856 CGAAGAGCCTGCCATACATTGA 60.743 50.000 0.00 0.00 0.00 2.57
2336 5451 1.600957 CGAAGAGCCTGCCATACATTG 59.399 52.381 0.00 0.00 0.00 2.82
2345 5460 3.435186 GCCCAACGAAGAGCCTGC 61.435 66.667 0.00 0.00 0.00 4.85
2372 5487 5.477136 CAAAACAAACGAATCAACGAAACC 58.523 37.500 0.00 0.00 37.03 3.27
2435 5557 3.506743 TGCCCTCCCAGGTTTGCA 61.507 61.111 0.00 0.00 31.93 4.08
2547 5801 7.809806 GGAACAGGTAAAATTGAATCAGTGAAG 59.190 37.037 0.00 0.00 0.00 3.02
2550 5804 7.086376 CAGGAACAGGTAAAATTGAATCAGTG 58.914 38.462 0.00 0.00 0.00 3.66
2551 5805 6.777580 ACAGGAACAGGTAAAATTGAATCAGT 59.222 34.615 0.00 0.00 0.00 3.41
2558 5812 8.043710 AGATCTCTACAGGAACAGGTAAAATTG 58.956 37.037 0.00 0.00 0.00 2.32
2563 5817 7.411808 ACTAAGATCTCTACAGGAACAGGTAA 58.588 38.462 0.00 0.00 0.00 2.85
2603 5857 3.057174 GCAGATCTTCTGGTATAGTCCCG 60.057 52.174 6.64 0.00 44.43 5.14
2606 5860 5.076873 AGAGGCAGATCTTCTGGTATAGTC 58.923 45.833 6.64 0.00 44.43 2.59
2621 5875 3.875390 TGCAGTGTGAGAGGCAGA 58.125 55.556 0.00 0.00 0.00 4.26
2624 5878 1.066286 AGATTCTGCAGTGTGAGAGGC 60.066 52.381 14.67 0.00 0.00 4.70
2657 5912 6.151312 AGACTAAAAGAGTTGCAGACGAGATA 59.849 38.462 0.00 0.00 39.06 1.98
2772 6027 6.391227 AAACCTGTAAGTTTGGACAATGAG 57.609 37.500 0.00 0.00 38.51 2.90
2874 6129 8.272889 ACCTGGGAAAAATAAGGATAGTAAGAC 58.727 37.037 0.00 0.00 33.78 3.01
2880 6135 6.663734 AGTGACCTGGGAAAAATAAGGATAG 58.336 40.000 0.00 0.00 33.78 2.08
3004 6259 3.353370 TGCATCATCCTCATCAACACA 57.647 42.857 0.00 0.00 0.00 3.72
3151 6412 6.543831 AGAAATGATCTGGGAAAATAGGAACG 59.456 38.462 0.00 0.00 36.88 3.95
3185 6446 6.959311 CGCCTATGATACAACAGTTAACAAAC 59.041 38.462 8.61 0.00 0.00 2.93
3199 6461 4.556233 TGTCTTGTATGCGCCTATGATAC 58.444 43.478 4.18 6.40 0.00 2.24
3203 6465 3.809279 TGATTGTCTTGTATGCGCCTATG 59.191 43.478 4.18 0.00 0.00 2.23
3498 7210 6.547510 GGCCACCATGATCTTATAGACTTTTT 59.452 38.462 0.00 0.00 0.00 1.94
3576 7288 8.517878 CATCAAGAGACATGGAATAGTGTTTTT 58.482 33.333 0.00 0.00 0.00 1.94
3623 7375 2.574006 AAGCCAGATGACAGAAGCAA 57.426 45.000 0.00 0.00 0.00 3.91
3624 7376 2.224597 TGAAAGCCAGATGACAGAAGCA 60.225 45.455 0.00 0.00 0.00 3.91
3625 7377 2.430465 TGAAAGCCAGATGACAGAAGC 58.570 47.619 0.00 0.00 0.00 3.86
3691 7443 2.283298 GATGCATTGGCTTCTCGAGAA 58.717 47.619 25.57 25.57 40.15 2.87
3794 7546 8.958043 GCAAATATATAGCGTTTCCAAAGAAAG 58.042 33.333 0.00 0.00 42.60 2.62
3865 7617 9.699703 GCAAATGGGTTAAACTTTATACTTTGA 57.300 29.630 0.00 0.00 0.00 2.69
3897 7649 6.037786 TCTGGAGTAACATCTTTACCACTG 57.962 41.667 0.00 0.00 0.00 3.66
3956 7708 7.067615 TGTTCTCTACATTCCTGATCAGAGTAC 59.932 40.741 24.62 13.98 33.20 2.73
4015 7767 5.410924 TCACTTGAAGATCGGTATGTTCTG 58.589 41.667 0.00 0.00 36.56 3.02
4057 7809 7.118971 GGCTGGCACTAAGAAATAGATGAATAG 59.881 40.741 0.00 0.00 35.47 1.73
4187 7939 7.390823 TGCACTGGAATTATGTCAGTAACTTA 58.609 34.615 0.00 0.00 39.43 2.24
4188 7940 6.237901 TGCACTGGAATTATGTCAGTAACTT 58.762 36.000 0.00 0.00 39.43 2.66
4189 7941 5.804639 TGCACTGGAATTATGTCAGTAACT 58.195 37.500 0.00 0.00 39.43 2.24
4191 7943 6.048732 TCTGCACTGGAATTATGTCAGTAA 57.951 37.500 0.00 0.00 39.43 2.24
4192 7944 5.675684 TCTGCACTGGAATTATGTCAGTA 57.324 39.130 0.00 0.00 39.43 2.74
4270 8022 3.843619 TCCTATTGATGAAGGTGGTGACA 59.156 43.478 0.00 0.00 34.30 3.58
4277 8029 2.507058 TGCTGCTCCTATTGATGAAGGT 59.493 45.455 0.00 0.00 34.30 3.50
4293 8045 1.360192 GTGTTGGAGTTGGTGCTGC 59.640 57.895 0.00 0.00 0.00 5.25
4450 8202 4.897509 TGTTTCTGAGATGATGAGGTGT 57.102 40.909 0.00 0.00 0.00 4.16
4517 8269 9.635404 AGGACTATAGATATGAATAGCACTACC 57.365 37.037 6.78 0.00 0.00 3.18
4845 8598 7.914871 TGAACAACATGTCAAAATTAGACTGTG 59.085 33.333 0.00 11.34 36.94 3.66
5006 8759 3.572715 TAGGGTGTGGTGGAGGGGG 62.573 68.421 0.00 0.00 0.00 5.40
5007 8760 2.124085 TAGGGTGTGGTGGAGGGG 59.876 66.667 0.00 0.00 0.00 4.79
5008 8761 1.229529 AGTAGGGTGTGGTGGAGGG 60.230 63.158 0.00 0.00 0.00 4.30
5009 8762 0.544357 TCAGTAGGGTGTGGTGGAGG 60.544 60.000 0.00 0.00 0.00 4.30
5010 8763 1.348064 TTCAGTAGGGTGTGGTGGAG 58.652 55.000 0.00 0.00 0.00 3.86
5011 8764 1.809133 TTTCAGTAGGGTGTGGTGGA 58.191 50.000 0.00 0.00 0.00 4.02
5019 8772 6.181908 TGTACAACAACTTTTTCAGTAGGGT 58.818 36.000 0.00 0.00 32.94 4.34
5359 9119 5.241662 GCAACCAGTTCTAGAAAGTCATCT 58.758 41.667 6.78 0.00 0.00 2.90
5928 9688 6.099125 TCACATGCTATACTAACTTTGGGCTA 59.901 38.462 0.00 0.00 0.00 3.93
6054 9814 3.384668 AGACAGAAATGCCGTATCATCG 58.615 45.455 0.00 0.00 0.00 3.84
6235 10001 1.605165 CCAAGCGGGGCCTTAACAA 60.605 57.895 0.84 0.00 0.00 2.83
6467 10233 8.090831 CAGGATATAAAGCATCAACAGCTACTA 58.909 37.037 0.00 0.00 42.53 1.82
6524 10292 4.072839 GGCGAATTAAATAGGCTAAGGCT 58.927 43.478 0.00 0.00 42.39 4.58
6591 10359 1.824230 ACCTGACAGCTGCAACAAAAA 59.176 42.857 15.27 0.00 0.00 1.94
6833 10602 2.609244 GCAGGTGAGTCAGAGAGTTGTC 60.609 54.545 0.00 0.00 0.00 3.18
7113 10885 7.669427 TGATTCATAAGGTTCTTGTGCAAAAT 58.331 30.769 0.00 0.00 0.00 1.82
7274 11046 4.924462 CCATGAGATCTGTGAATCATCGAG 59.076 45.833 0.00 0.00 30.09 4.04
7305 11077 0.038709 CCAAAAATTTCCGAGCGGCA 60.039 50.000 1.45 0.00 34.68 5.69
7479 11251 5.344743 TGTTCTGTCTAAGACATCCCATC 57.655 43.478 0.00 0.00 41.94 3.51
7484 11256 5.491982 ACCCAATGTTCTGTCTAAGACATC 58.508 41.667 0.00 0.00 41.94 3.06
7512 11284 0.243636 CGCCCCAATTTCTGTTCACC 59.756 55.000 0.00 0.00 0.00 4.02
7526 11298 0.395173 TTATCCCTTTTCTGCGCCCC 60.395 55.000 4.18 0.00 0.00 5.80
7528 11300 5.488341 TCTATATTATCCCTTTTCTGCGCC 58.512 41.667 4.18 0.00 0.00 6.53
7529 11301 6.398918 TCTCTATATTATCCCTTTTCTGCGC 58.601 40.000 0.00 0.00 0.00 6.09
7530 11302 7.493971 CCATCTCTATATTATCCCTTTTCTGCG 59.506 40.741 0.00 0.00 0.00 5.18
7531 11303 7.772757 CCCATCTCTATATTATCCCTTTTCTGC 59.227 40.741 0.00 0.00 0.00 4.26
7533 11305 8.193874 TCCCCATCTCTATATTATCCCTTTTCT 58.806 37.037 0.00 0.00 0.00 2.52
7534 11306 8.393959 TCCCCATCTCTATATTATCCCTTTTC 57.606 38.462 0.00 0.00 0.00 2.29
7537 11309 7.914407 ACATTCCCCATCTCTATATTATCCCTT 59.086 37.037 0.00 0.00 0.00 3.95
7538 11310 7.349330 CACATTCCCCATCTCTATATTATCCCT 59.651 40.741 0.00 0.00 0.00 4.20
7539 11311 7.512992 CACATTCCCCATCTCTATATTATCCC 58.487 42.308 0.00 0.00 0.00 3.85
7542 11314 7.366281 CCTGCACATTCCCCATCTCTATATTAT 60.366 40.741 0.00 0.00 0.00 1.28
7543 11315 6.070021 CCTGCACATTCCCCATCTCTATATTA 60.070 42.308 0.00 0.00 0.00 0.98
7546 11318 3.584406 CCTGCACATTCCCCATCTCTATA 59.416 47.826 0.00 0.00 0.00 1.31
7547 11319 2.374504 CCTGCACATTCCCCATCTCTAT 59.625 50.000 0.00 0.00 0.00 1.98
7548 11320 1.770658 CCTGCACATTCCCCATCTCTA 59.229 52.381 0.00 0.00 0.00 2.43
7600 11373 5.463051 AATTCCTTCACCCAAGATGATCT 57.537 39.130 0.00 0.00 33.29 2.75
7609 11382 0.116143 CCCCCAAATTCCTTCACCCA 59.884 55.000 0.00 0.00 0.00 4.51
7610 11383 0.411848 TCCCCCAAATTCCTTCACCC 59.588 55.000 0.00 0.00 0.00 4.61
7620 11393 0.707616 TTCCCGACATTCCCCCAAAT 59.292 50.000 0.00 0.00 0.00 2.32
7635 11408 3.056201 TGTAGGGGTCTATTCCTTCCC 57.944 52.381 0.00 0.00 39.22 3.97
7643 11416 6.162241 AGGGAAATTTTCATGTAGGGGTCTAT 59.838 38.462 11.09 0.00 0.00 1.98
7648 11421 6.136155 ACATAGGGAAATTTTCATGTAGGGG 58.864 40.000 11.09 0.00 0.00 4.79
7656 11429 5.193728 AGAGGGCTACATAGGGAAATTTTCA 59.806 40.000 11.09 0.00 0.00 2.69
7667 11440 4.487714 TTTGTTCCAGAGGGCTACATAG 57.512 45.455 0.00 0.00 31.40 2.23
7681 11454 4.024048 TCAAGAAGCTCGTTCATTTGTTCC 60.024 41.667 0.00 0.00 37.67 3.62
7709 11483 0.178998 GCATCTGAGCCATCCCATGT 60.179 55.000 0.00 0.00 0.00 3.21
7710 11484 1.235281 CGCATCTGAGCCATCCCATG 61.235 60.000 0.00 0.00 0.00 3.66
7747 11565 2.114616 ACTGTATCCAGAAGGCCAGAG 58.885 52.381 5.01 0.00 41.50 3.35
7770 11588 5.953183 TGGCAATGTAAAAACAGATGCTAG 58.047 37.500 14.68 0.00 36.92 3.42
7790 11608 0.596600 CAATGAGATGGCGCAATGGC 60.597 55.000 10.83 0.00 45.12 4.40
7793 11611 1.466856 ACACAATGAGATGGCGCAAT 58.533 45.000 10.83 1.77 0.00 3.56
7794 11612 2.106477 TACACAATGAGATGGCGCAA 57.894 45.000 10.83 0.00 0.00 4.85
7795 11613 2.212652 GATACACAATGAGATGGCGCA 58.787 47.619 10.83 0.00 0.00 6.09
7822 11640 1.265905 GGTAAAACAGACACAAGGGCG 59.734 52.381 0.00 0.00 0.00 6.13
7823 11641 2.303175 TGGTAAAACAGACACAAGGGC 58.697 47.619 0.00 0.00 0.00 5.19
7824 11642 3.951680 AGTTGGTAAAACAGACACAAGGG 59.048 43.478 0.00 0.00 0.00 3.95
7825 11643 4.881850 AGAGTTGGTAAAACAGACACAAGG 59.118 41.667 0.00 0.00 0.00 3.61
7826 11644 6.316390 AGAAGAGTTGGTAAAACAGACACAAG 59.684 38.462 0.00 0.00 0.00 3.16
7829 11647 6.679327 AAGAAGAGTTGGTAAAACAGACAC 57.321 37.500 0.00 0.00 0.00 3.67
7831 11649 6.238676 GGGAAAGAAGAGTTGGTAAAACAGAC 60.239 42.308 0.00 0.00 0.00 3.51
7832 11650 5.826208 GGGAAAGAAGAGTTGGTAAAACAGA 59.174 40.000 0.00 0.00 0.00 3.41
7833 11651 5.828328 AGGGAAAGAAGAGTTGGTAAAACAG 59.172 40.000 0.00 0.00 0.00 3.16
7834 11652 5.762279 AGGGAAAGAAGAGTTGGTAAAACA 58.238 37.500 0.00 0.00 0.00 2.83
7836 11654 7.383156 TCTAGGGAAAGAAGAGTTGGTAAAA 57.617 36.000 0.00 0.00 0.00 1.52
7837 11655 7.569599 ATCTAGGGAAAGAAGAGTTGGTAAA 57.430 36.000 0.00 0.00 0.00 2.01
7839 11657 7.899709 AGTAATCTAGGGAAAGAAGAGTTGGTA 59.100 37.037 0.00 0.00 0.00 3.25
7840 11658 6.731448 AGTAATCTAGGGAAAGAAGAGTTGGT 59.269 38.462 0.00 0.00 0.00 3.67
7841 11659 7.044798 CAGTAATCTAGGGAAAGAAGAGTTGG 58.955 42.308 0.00 0.00 0.00 3.77
7842 11660 7.616313 ACAGTAATCTAGGGAAAGAAGAGTTG 58.384 38.462 0.00 0.00 0.00 3.16
7843 11661 7.676468 AGACAGTAATCTAGGGAAAGAAGAGTT 59.324 37.037 0.00 0.00 0.00 3.01
7844 11662 7.123547 CAGACAGTAATCTAGGGAAAGAAGAGT 59.876 40.741 0.00 0.00 0.00 3.24
7846 11664 6.381420 CCAGACAGTAATCTAGGGAAAGAAGA 59.619 42.308 0.00 0.00 0.00 2.87
7847 11665 6.155393 ACCAGACAGTAATCTAGGGAAAGAAG 59.845 42.308 0.00 0.00 0.00 2.85
7850 11668 5.941555 ACCAGACAGTAATCTAGGGAAAG 57.058 43.478 0.00 0.00 0.00 2.62
7852 11670 6.155737 GGTAAACCAGACAGTAATCTAGGGAA 59.844 42.308 0.00 0.00 35.64 3.97
7853 11671 5.659971 GGTAAACCAGACAGTAATCTAGGGA 59.340 44.000 0.00 0.00 35.64 4.20
7854 11672 5.424252 TGGTAAACCAGACAGTAATCTAGGG 59.576 44.000 0.00 0.00 42.01 3.53
7855 11673 6.540438 TGGTAAACCAGACAGTAATCTAGG 57.460 41.667 0.00 0.00 42.01 3.02
7871 11689 7.812690 TCTAGGGAAAGAAAAGTTGGTAAAC 57.187 36.000 0.00 0.00 36.47 2.01
7873 11691 9.511272 GTAATCTAGGGAAAGAAAAGTTGGTAA 57.489 33.333 0.00 0.00 0.00 2.85
7898 11716 5.223449 TCTTTCAATTACGTCCTCCTTGT 57.777 39.130 0.00 0.00 0.00 3.16
7931 11749 9.807921 ACCTTAATATTTCTTTCAAGACCTTCA 57.192 29.630 0.00 0.00 34.13 3.02
7933 11751 8.523658 GCACCTTAATATTTCTTTCAAGACCTT 58.476 33.333 0.00 0.00 34.13 3.50
7934 11752 7.669722 TGCACCTTAATATTTCTTTCAAGACCT 59.330 33.333 0.00 0.00 34.13 3.85
7935 11753 7.826690 TGCACCTTAATATTTCTTTCAAGACC 58.173 34.615 0.00 0.00 34.13 3.85
7936 11754 9.346725 CTTGCACCTTAATATTTCTTTCAAGAC 57.653 33.333 0.00 0.00 34.13 3.01
7937 11755 9.295825 TCTTGCACCTTAATATTTCTTTCAAGA 57.704 29.630 0.00 4.36 34.54 3.02
7938 11756 9.912634 TTCTTGCACCTTAATATTTCTTTCAAG 57.087 29.630 0.00 2.19 0.00 3.02
7962 11780 4.406003 TGTCCCTCTTAGTTCCTAGCATTC 59.594 45.833 0.00 0.00 0.00 2.67
8061 11884 6.183360 CCGAAGATTCATAGTGAGTTGCATTT 60.183 38.462 0.00 0.00 0.00 2.32
8116 11942 4.083110 CCTGCAAGTGTGAGTTTATTCCTG 60.083 45.833 0.00 0.00 0.00 3.86
8175 12002 1.004277 GGCAGAAGGTTGTGGGATACA 59.996 52.381 0.00 0.00 37.56 2.29
8176 12003 1.682087 GGGCAGAAGGTTGTGGGATAC 60.682 57.143 0.00 0.00 0.00 2.24
8177 12004 0.623723 GGGCAGAAGGTTGTGGGATA 59.376 55.000 0.00 0.00 0.00 2.59
8178 12005 1.142688 AGGGCAGAAGGTTGTGGGAT 61.143 55.000 0.00 0.00 0.00 3.85
8179 12006 1.774217 AGGGCAGAAGGTTGTGGGA 60.774 57.895 0.00 0.00 0.00 4.37
8180 12007 1.604593 CAGGGCAGAAGGTTGTGGG 60.605 63.158 0.00 0.00 0.00 4.61
8181 12008 2.270986 GCAGGGCAGAAGGTTGTGG 61.271 63.158 0.00 0.00 0.00 4.17
8182 12009 2.270986 GGCAGGGCAGAAGGTTGTG 61.271 63.158 0.00 0.00 0.00 3.33
8183 12010 2.116125 GGCAGGGCAGAAGGTTGT 59.884 61.111 0.00 0.00 0.00 3.32
8184 12011 2.677875 GGGCAGGGCAGAAGGTTG 60.678 66.667 0.00 0.00 0.00 3.77
8185 12012 3.984732 GGGGCAGGGCAGAAGGTT 61.985 66.667 0.00 0.00 0.00 3.50
8188 12015 4.785453 GTCGGGGCAGGGCAGAAG 62.785 72.222 0.00 0.00 0.00 2.85
8195 12022 3.151710 TATGACGGTCGGGGCAGG 61.152 66.667 3.34 0.00 0.00 4.85
8196 12023 2.106332 GTATGACGGTCGGGGCAG 59.894 66.667 3.34 0.00 0.00 4.85
8197 12024 2.680707 TGTATGACGGTCGGGGCA 60.681 61.111 3.34 0.00 0.00 5.36
8198 12025 2.106332 CTGTATGACGGTCGGGGC 59.894 66.667 3.34 0.00 0.00 5.80
8199 12026 1.324740 TTCCTGTATGACGGTCGGGG 61.325 60.000 3.34 1.64 0.00 5.73
8200 12027 0.533491 TTTCCTGTATGACGGTCGGG 59.467 55.000 3.34 0.00 0.00 5.14
8201 12028 1.636988 GTTTCCTGTATGACGGTCGG 58.363 55.000 3.34 0.00 0.00 4.79
8202 12029 1.067425 TGGTTTCCTGTATGACGGTCG 60.067 52.381 3.34 0.00 0.00 4.79
8203 12030 2.754946 TGGTTTCCTGTATGACGGTC 57.245 50.000 0.00 0.00 0.00 4.79
8204 12031 3.008594 TGATTGGTTTCCTGTATGACGGT 59.991 43.478 0.00 0.00 0.00 4.83
8205 12032 3.374058 GTGATTGGTTTCCTGTATGACGG 59.626 47.826 0.00 0.00 0.00 4.79
8206 12033 3.374058 GGTGATTGGTTTCCTGTATGACG 59.626 47.826 0.00 0.00 0.00 4.35
8207 12034 4.331968 TGGTGATTGGTTTCCTGTATGAC 58.668 43.478 0.00 0.00 0.00 3.06
8208 12035 4.649267 TGGTGATTGGTTTCCTGTATGA 57.351 40.909 0.00 0.00 0.00 2.15
8209 12036 4.766891 ACTTGGTGATTGGTTTCCTGTATG 59.233 41.667 0.00 0.00 0.00 2.39
8210 12037 4.998051 ACTTGGTGATTGGTTTCCTGTAT 58.002 39.130 0.00 0.00 0.00 2.29
8211 12038 4.447138 ACTTGGTGATTGGTTTCCTGTA 57.553 40.909 0.00 0.00 0.00 2.74
8212 12039 3.312736 ACTTGGTGATTGGTTTCCTGT 57.687 42.857 0.00 0.00 0.00 4.00
8213 12040 3.243839 CCAACTTGGTGATTGGTTTCCTG 60.244 47.826 0.00 0.00 40.51 3.86
8214 12041 2.965147 CCAACTTGGTGATTGGTTTCCT 59.035 45.455 0.00 0.00 40.51 3.36
8215 12042 3.385193 CCAACTTGGTGATTGGTTTCC 57.615 47.619 0.00 0.00 40.51 3.13
8227 12054 3.742433 TGTAAAATGGCACCAACTTGG 57.258 42.857 6.24 6.24 45.02 3.61
8228 12055 4.272261 GGTTTGTAAAATGGCACCAACTTG 59.728 41.667 0.00 0.00 0.00 3.16
8229 12056 4.447290 GGTTTGTAAAATGGCACCAACTT 58.553 39.130 0.00 0.00 0.00 2.66
8230 12057 3.181459 GGGTTTGTAAAATGGCACCAACT 60.181 43.478 0.00 0.00 0.00 3.16
8231 12058 3.135225 GGGTTTGTAAAATGGCACCAAC 58.865 45.455 0.00 0.00 0.00 3.77
8232 12059 2.771943 TGGGTTTGTAAAATGGCACCAA 59.228 40.909 0.00 0.00 0.00 3.67
8233 12060 2.398588 TGGGTTTGTAAAATGGCACCA 58.601 42.857 0.00 0.00 0.00 4.17
8234 12061 3.477210 TTGGGTTTGTAAAATGGCACC 57.523 42.857 0.00 0.00 0.00 5.01
8235 12062 4.272261 CAGTTTGGGTTTGTAAAATGGCAC 59.728 41.667 0.00 0.00 30.70 5.01
8236 12063 4.080863 ACAGTTTGGGTTTGTAAAATGGCA 60.081 37.500 0.00 0.00 36.50 4.92
8237 12064 4.447290 ACAGTTTGGGTTTGTAAAATGGC 58.553 39.130 0.00 0.00 36.50 4.40
8238 12065 4.742659 CGACAGTTTGGGTTTGTAAAATGG 59.257 41.667 0.00 0.00 36.50 3.16
8239 12066 5.583495 TCGACAGTTTGGGTTTGTAAAATG 58.417 37.500 0.00 0.00 37.73 2.32
8240 12067 5.838531 TCGACAGTTTGGGTTTGTAAAAT 57.161 34.783 0.00 0.00 0.00 1.82
8241 12068 5.640189 TTCGACAGTTTGGGTTTGTAAAA 57.360 34.783 0.00 0.00 0.00 1.52
8242 12069 5.838531 ATTCGACAGTTTGGGTTTGTAAA 57.161 34.783 0.00 0.00 0.00 2.01
8243 12070 5.583495 CAATTCGACAGTTTGGGTTTGTAA 58.417 37.500 0.00 0.00 0.00 2.41
8244 12071 5.176407 CAATTCGACAGTTTGGGTTTGTA 57.824 39.130 0.00 0.00 0.00 2.41
8245 12072 4.040445 CAATTCGACAGTTTGGGTTTGT 57.960 40.909 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.