Multiple sequence alignment - TraesCS7D01G476900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G476900 chr7D 100.000 4973 0 0 822 5794 588068315 588063343 0.000000e+00 9184.0
1 TraesCS7D01G476900 chr7D 100.000 639 0 0 1 639 588069136 588068498 0.000000e+00 1181.0
2 TraesCS7D01G476900 chr7A 93.474 2176 87 32 839 2979 679927607 679925452 0.000000e+00 3181.0
3 TraesCS7D01G476900 chr7A 94.799 1692 61 6 3141 4831 679925453 679923788 0.000000e+00 2612.0
4 TraesCS7D01G476900 chr7A 93.813 695 35 4 4829 5522 679923836 679923149 0.000000e+00 1038.0
5 TraesCS7D01G476900 chr7A 89.785 372 27 5 68 433 679928421 679928055 3.160000e-127 466.0
6 TraesCS7D01G476900 chr7A 95.977 174 7 0 2970 3143 62992970 62993143 3.420000e-72 283.0
7 TraesCS7D01G476900 chr7A 89.032 155 9 7 469 620 679927979 679927830 9.910000e-43 185.0
8 TraesCS7D01G476900 chr7B 92.667 2141 91 40 822 2925 660362694 660360583 0.000000e+00 3024.0
9 TraesCS7D01G476900 chr7B 94.947 1128 40 6 3143 4262 660360445 660359327 0.000000e+00 1751.0
10 TraesCS7D01G476900 chr7B 90.491 978 52 19 4829 5794 660358858 660357910 0.000000e+00 1253.0
11 TraesCS7D01G476900 chr7B 93.838 568 27 3 4264 4831 660359369 660358810 0.000000e+00 848.0
12 TraesCS7D01G476900 chr7B 86.496 548 38 14 888 1416 699156350 699155820 2.340000e-158 569.0
13 TraesCS7D01G476900 chr7B 96.429 56 2 0 2923 2978 660360502 660360447 6.180000e-15 93.5
14 TraesCS7D01G476900 chr2B 86.977 622 40 17 888 1488 369808859 369808258 0.000000e+00 662.0
15 TraesCS7D01G476900 chr2B 97.024 168 5 0 2977 3144 174794821 174794988 3.420000e-72 283.0
16 TraesCS7D01G476900 chr6A 97.701 174 4 0 2973 3146 287304054 287304227 3.390000e-77 300.0
17 TraesCS7D01G476900 chr6A 89.873 79 8 0 1025 1103 142780236 142780314 1.030000e-17 102.0
18 TraesCS7D01G476900 chr6D 96.532 173 5 1 2978 3149 392896975 392897147 9.500000e-73 285.0
19 TraesCS7D01G476900 chr6D 89.873 79 8 0 1025 1103 114228937 114229015 1.030000e-17 102.0
20 TraesCS7D01G476900 chr1D 97.041 169 5 0 2978 3146 238940380 238940212 9.500000e-73 285.0
21 TraesCS7D01G476900 chr1D 89.706 68 7 0 1226 1293 452493420 452493353 2.880000e-13 87.9
22 TraesCS7D01G476900 chr4B 96.491 171 6 0 2978 3148 113961281 113961111 3.420000e-72 283.0
23 TraesCS7D01G476900 chr3A 96.512 172 5 1 2978 3149 585605802 585605632 3.420000e-72 283.0
24 TraesCS7D01G476900 chr4A 94.972 179 8 1 2965 3142 362067897 362068075 4.420000e-71 279.0
25 TraesCS7D01G476900 chr2D 94.915 177 7 2 2978 3153 29162389 29162564 5.720000e-70 276.0
26 TraesCS7D01G476900 chr6B 90.541 74 7 0 1025 1098 203919922 203919995 1.330000e-16 99.0
27 TraesCS7D01G476900 chr1B 89.706 68 7 0 1226 1293 622482492 622482425 2.880000e-13 87.9
28 TraesCS7D01G476900 chr1A 89.706 68 7 0 1226 1293 547318164 547318097 2.880000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G476900 chr7D 588063343 588069136 5793 True 5182.5 9184 100.0000 1 5794 2 chr7D.!!$R1 5793
1 TraesCS7D01G476900 chr7A 679923149 679928421 5272 True 1496.4 3181 92.1806 68 5522 5 chr7A.!!$R1 5454
2 TraesCS7D01G476900 chr7B 660357910 660362694 4784 True 1393.9 3024 93.6744 822 5794 5 chr7B.!!$R2 4972
3 TraesCS7D01G476900 chr7B 699155820 699156350 530 True 569.0 569 86.4960 888 1416 1 chr7B.!!$R1 528
4 TraesCS7D01G476900 chr2B 369808258 369808859 601 True 662.0 662 86.9770 888 1488 1 chr2B.!!$R1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 476 0.027716 CATCGTCGGAGTACTCACGG 59.972 60.000 26.30 15.54 33.02 4.94 F
1158 1239 0.322456 CCTCCCGACCTGCATTTCAA 60.322 55.000 0.00 0.00 0.00 2.69 F
1496 1597 0.110486 TGGGTCTTGTTCCCTGCTTC 59.890 55.000 2.65 0.00 44.84 3.86 F
1844 1948 1.008538 GAACTGCAGCAACCAACGG 60.009 57.895 15.27 0.00 0.00 4.44 F
3599 3797 0.107165 GCCAACCACTGGGGATCTAC 60.107 60.000 1.10 0.00 46.54 2.59 F
4192 4395 0.594796 GCTGCGGGCAATTTTATCGG 60.595 55.000 0.00 0.00 41.35 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1318 1412 1.813859 CTGCATTGCATGGTCAGGG 59.186 57.895 12.53 0.00 38.13 4.45 R
3121 3316 1.488390 ACTCCCGCCGTTCCTAAATA 58.512 50.000 0.00 0.00 0.00 1.40 R
3126 3321 1.713297 ATAATACTCCCGCCGTTCCT 58.287 50.000 0.00 0.00 0.00 3.36 R
3606 3804 1.066430 GCAGAACATAGTGGACCGGAA 60.066 52.381 9.46 0.00 0.00 4.30 R
4579 4783 0.108424 GTAGTACTGCTGCTGCTGCT 60.108 55.000 27.67 14.24 41.07 4.24 R
5774 5991 0.322187 ACAATTCCCGAAACTCCCCG 60.322 55.000 0.00 0.00 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.208632 CGTCCCCTGCTTTGCTAG 57.791 61.111 0.00 0.00 0.00 3.42
26 27 2.090693 GCTTTGCTAGCTCGTTCCC 58.909 57.895 17.23 0.00 46.77 3.97
27 28 1.369839 GCTTTGCTAGCTCGTTCCCC 61.370 60.000 17.23 0.00 46.77 4.81
28 29 1.079405 TTTGCTAGCTCGTTCCCCG 60.079 57.895 17.23 0.00 38.13 5.73
29 30 1.537814 TTTGCTAGCTCGTTCCCCGA 61.538 55.000 17.23 0.00 45.00 5.14
30 31 2.104530 GCTAGCTCGTTCCCCGAC 59.895 66.667 7.70 0.00 41.60 4.79
31 32 2.806237 CTAGCTCGTTCCCCGACC 59.194 66.667 0.00 0.00 41.60 4.79
32 33 2.036098 TAGCTCGTTCCCCGACCA 59.964 61.111 0.00 0.00 41.60 4.02
33 34 1.601419 CTAGCTCGTTCCCCGACCAA 61.601 60.000 0.00 0.00 41.60 3.67
34 35 1.880819 TAGCTCGTTCCCCGACCAAC 61.881 60.000 0.00 0.00 41.60 3.77
35 36 2.738480 CTCGTTCCCCGACCAACA 59.262 61.111 0.00 0.00 41.60 3.33
36 37 1.374252 CTCGTTCCCCGACCAACAG 60.374 63.158 0.00 0.00 41.60 3.16
37 38 1.812686 CTCGTTCCCCGACCAACAGA 61.813 60.000 0.00 0.00 41.60 3.41
38 39 1.374252 CGTTCCCCGACCAACAGAG 60.374 63.158 0.00 0.00 39.56 3.35
39 40 1.671379 GTTCCCCGACCAACAGAGC 60.671 63.158 0.00 0.00 0.00 4.09
40 41 2.144078 TTCCCCGACCAACAGAGCA 61.144 57.895 0.00 0.00 0.00 4.26
41 42 2.358737 CCCCGACCAACAGAGCAC 60.359 66.667 0.00 0.00 0.00 4.40
42 43 2.358737 CCCGACCAACAGAGCACC 60.359 66.667 0.00 0.00 0.00 5.01
43 44 2.743718 CCGACCAACAGAGCACCT 59.256 61.111 0.00 0.00 0.00 4.00
45 46 2.320587 CGACCAACAGAGCACCTGC 61.321 63.158 6.10 0.00 46.81 4.85
46 47 1.227943 GACCAACAGAGCACCTGCA 60.228 57.895 6.10 0.00 46.81 4.41
47 48 0.819259 GACCAACAGAGCACCTGCAA 60.819 55.000 6.10 0.00 46.81 4.08
48 49 0.820891 ACCAACAGAGCACCTGCAAG 60.821 55.000 6.10 0.00 46.81 4.01
59 60 2.977178 CTGCAAGGCCTCGTCTCT 59.023 61.111 5.23 0.00 0.00 3.10
60 61 1.294780 CTGCAAGGCCTCGTCTCTT 59.705 57.895 5.23 0.00 0.00 2.85
61 62 0.739112 CTGCAAGGCCTCGTCTCTTC 60.739 60.000 5.23 0.00 0.00 2.87
62 63 1.448717 GCAAGGCCTCGTCTCTTCC 60.449 63.158 5.23 0.00 0.00 3.46
63 64 1.153745 CAAGGCCTCGTCTCTTCCG 60.154 63.158 5.23 0.00 0.00 4.30
64 65 2.352032 AAGGCCTCGTCTCTTCCGG 61.352 63.158 5.23 0.00 0.00 5.14
65 66 3.069318 GGCCTCGTCTCTTCCGGT 61.069 66.667 0.00 0.00 0.00 5.28
66 67 1.751927 GGCCTCGTCTCTTCCGGTA 60.752 63.158 0.00 0.00 0.00 4.02
82 83 1.534175 CGGTAAGAGACGAGCCACATC 60.534 57.143 0.00 0.00 0.00 3.06
95 96 2.505819 AGCCACATCGAAGGAAATAGGT 59.494 45.455 6.15 0.00 0.00 3.08
102 103 3.596214 TCGAAGGAAATAGGTTGTCAGC 58.404 45.455 0.00 0.00 0.00 4.26
108 109 3.307762 GGAAATAGGTTGTCAGCCTGAGT 60.308 47.826 17.92 2.85 37.54 3.41
109 110 4.081087 GGAAATAGGTTGTCAGCCTGAGTA 60.081 45.833 17.92 0.00 37.54 2.59
111 112 2.016905 AGGTTGTCAGCCTGAGTAGT 57.983 50.000 7.55 0.00 34.56 2.73
112 113 2.330216 AGGTTGTCAGCCTGAGTAGTT 58.670 47.619 7.55 0.00 34.56 2.24
123 124 4.404073 AGCCTGAGTAGTTATTGAGTGAGG 59.596 45.833 0.00 0.00 0.00 3.86
141 142 4.511082 GTGAGGATCTCTCTTGCTAAATGC 59.489 45.833 11.12 0.00 42.86 3.56
196 197 2.716814 CTGGAAGCTGGCATGGATC 58.283 57.895 0.00 0.00 0.00 3.36
227 228 3.426525 CGTCCTAAACGTACACTTCAACC 59.573 47.826 0.00 0.00 46.42 3.77
286 287 8.687824 AAGTGTGTTATTTTTCACAAAGTCAG 57.312 30.769 0.00 0.00 44.37 3.51
328 329 9.495754 GATCAAGTTTATACAACAGATCAAAGC 57.504 33.333 16.81 0.00 35.70 3.51
335 336 1.402968 CAACAGATCAAAGCCGGATGG 59.597 52.381 5.05 0.00 38.77 3.51
336 337 0.620556 ACAGATCAAAGCCGGATGGT 59.379 50.000 5.05 0.00 37.67 3.55
344 345 0.323451 AAGCCGGATGGTTTTCCCTC 60.323 55.000 5.05 0.00 34.66 4.30
394 401 9.661563 AATATCTACAACCAGACAAACGAAATA 57.338 29.630 0.00 0.00 0.00 1.40
433 440 4.396166 GGTGGATCTGACAGTAATTTGGTG 59.604 45.833 1.59 0.00 0.00 4.17
434 441 4.396166 GTGGATCTGACAGTAATTTGGTGG 59.604 45.833 1.59 0.00 0.00 4.61
435 442 4.042809 TGGATCTGACAGTAATTTGGTGGT 59.957 41.667 1.59 0.00 0.00 4.16
436 443 4.396166 GGATCTGACAGTAATTTGGTGGTG 59.604 45.833 1.59 0.00 0.00 4.17
437 444 3.146066 TCTGACAGTAATTTGGTGGTGC 58.854 45.455 1.59 0.00 0.00 5.01
440 447 2.228822 GACAGTAATTTGGTGGTGCCTG 59.771 50.000 0.00 0.00 38.35 4.85
442 449 3.091545 CAGTAATTTGGTGGTGCCTGAT 58.908 45.455 0.00 0.00 38.35 2.90
443 450 3.129287 CAGTAATTTGGTGGTGCCTGATC 59.871 47.826 0.00 0.00 38.35 2.92
445 452 2.307496 ATTTGGTGGTGCCTGATCAA 57.693 45.000 0.00 0.00 38.35 2.57
446 453 1.327303 TTTGGTGGTGCCTGATCAAC 58.673 50.000 0.00 0.00 38.35 3.18
447 454 0.184692 TTGGTGGTGCCTGATCAACA 59.815 50.000 0.00 0.00 38.35 3.33
452 459 1.180029 GGTGCCTGATCAACAAGCAT 58.820 50.000 11.21 0.00 45.77 3.79
454 461 1.089112 TGCCTGATCAACAAGCATCG 58.911 50.000 0.00 0.00 40.46 3.84
455 462 1.089920 GCCTGATCAACAAGCATCGT 58.910 50.000 0.00 0.00 36.13 3.73
456 463 1.063174 GCCTGATCAACAAGCATCGTC 59.937 52.381 0.00 0.00 36.13 4.20
457 464 1.325640 CCTGATCAACAAGCATCGTCG 59.674 52.381 0.00 0.00 0.00 5.12
458 465 1.325640 CTGATCAACAAGCATCGTCGG 59.674 52.381 0.00 0.00 0.00 4.79
459 466 1.067213 TGATCAACAAGCATCGTCGGA 60.067 47.619 0.00 0.00 0.00 4.55
460 467 1.590238 GATCAACAAGCATCGTCGGAG 59.410 52.381 0.00 0.00 0.00 4.63
462 469 1.542472 TCAACAAGCATCGTCGGAGTA 59.458 47.619 0.00 0.00 0.00 2.59
463 470 1.654105 CAACAAGCATCGTCGGAGTAC 59.346 52.381 0.00 0.00 0.00 2.73
465 472 1.132643 ACAAGCATCGTCGGAGTACTC 59.867 52.381 14.87 14.87 0.00 2.59
466 473 1.132453 CAAGCATCGTCGGAGTACTCA 59.868 52.381 23.91 3.71 0.00 3.41
467 474 0.733729 AGCATCGTCGGAGTACTCAC 59.266 55.000 23.91 13.43 0.00 3.51
469 476 0.027716 CATCGTCGGAGTACTCACGG 59.972 60.000 26.30 15.54 33.02 4.94
470 477 1.712977 ATCGTCGGAGTACTCACGGC 61.713 60.000 26.30 23.75 33.02 5.68
471 478 2.683859 CGTCGGAGTACTCACGGCA 61.684 63.158 26.64 12.36 31.52 5.69
472 479 1.154073 GTCGGAGTACTCACGGCAC 60.154 63.158 23.91 14.82 31.52 5.01
473 480 1.601477 TCGGAGTACTCACGGCACA 60.601 57.895 23.91 6.93 0.00 4.57
474 481 1.154016 CGGAGTACTCACGGCACAG 60.154 63.158 23.91 1.65 0.00 3.66
475 482 1.446272 GGAGTACTCACGGCACAGC 60.446 63.158 23.91 0.00 0.00 4.40
478 485 1.738099 GTACTCACGGCACAGCAGG 60.738 63.158 0.00 0.00 0.00 4.85
479 486 3.589654 TACTCACGGCACAGCAGGC 62.590 63.158 0.00 0.00 0.00 4.85
620 670 2.357760 GTTGTGGGCGCCGAAGTA 60.358 61.111 22.54 3.53 0.00 2.24
621 671 1.743995 GTTGTGGGCGCCGAAGTAT 60.744 57.895 22.54 0.00 0.00 2.12
622 672 1.448893 TTGTGGGCGCCGAAGTATC 60.449 57.895 22.54 4.49 0.00 2.24
623 673 2.588034 GTGGGCGCCGAAGTATCC 60.588 66.667 22.54 3.93 0.00 2.59
624 674 4.215742 TGGGCGCCGAAGTATCCG 62.216 66.667 22.54 0.00 0.00 4.18
630 680 3.857764 CCGAAGTATCCGGCTCCT 58.142 61.111 0.00 0.00 40.54 3.69
631 681 1.660917 CCGAAGTATCCGGCTCCTC 59.339 63.158 0.00 0.00 40.54 3.71
632 682 1.660917 CGAAGTATCCGGCTCCTCC 59.339 63.158 0.00 0.00 0.00 4.30
633 683 1.807495 CGAAGTATCCGGCTCCTCCC 61.807 65.000 0.00 0.00 0.00 4.30
634 684 1.459730 AAGTATCCGGCTCCTCCCC 60.460 63.158 0.00 0.00 0.00 4.81
635 685 1.962570 AAGTATCCGGCTCCTCCCCT 61.963 60.000 0.00 0.00 0.00 4.79
636 686 1.072505 AGTATCCGGCTCCTCCCCTA 61.073 60.000 0.00 0.00 0.00 3.53
637 687 0.899253 GTATCCGGCTCCTCCCCTAC 60.899 65.000 0.00 0.00 0.00 3.18
638 688 2.421923 TATCCGGCTCCTCCCCTACG 62.422 65.000 0.00 0.00 0.00 3.51
1098 1153 3.319972 ACTTCAACAGCGAGTACAAGGTA 59.680 43.478 0.00 0.00 0.00 3.08
1134 1189 4.043200 GCCAACACCTCGCCTTGC 62.043 66.667 0.00 0.00 0.00 4.01
1142 1197 1.227497 CCTCGCCTTGCATCTCCTC 60.227 63.158 0.00 0.00 0.00 3.71
1154 1235 0.692419 ATCTCCTCCCGACCTGCATT 60.692 55.000 0.00 0.00 0.00 3.56
1155 1236 0.909610 TCTCCTCCCGACCTGCATTT 60.910 55.000 0.00 0.00 0.00 2.32
1158 1239 0.322456 CCTCCCGACCTGCATTTCAA 60.322 55.000 0.00 0.00 0.00 2.69
1159 1240 0.804989 CTCCCGACCTGCATTTCAAC 59.195 55.000 0.00 0.00 0.00 3.18
1168 1262 3.508793 ACCTGCATTTCAACCTCTGATTG 59.491 43.478 0.00 0.00 32.78 2.67
1204 1298 3.376078 CAATTGCCAGTGCGCCCT 61.376 61.111 4.18 0.00 41.78 5.19
1205 1299 3.064324 AATTGCCAGTGCGCCCTC 61.064 61.111 4.18 0.00 41.78 4.30
1206 1300 3.574074 AATTGCCAGTGCGCCCTCT 62.574 57.895 4.18 0.00 41.78 3.69
1209 1303 4.082523 GCCAGTGCGCCCTCTGTA 62.083 66.667 4.18 0.00 32.14 2.74
1211 1305 1.221840 CCAGTGCGCCCTCTGTAAT 59.778 57.895 4.18 0.00 32.14 1.89
1214 1308 2.485479 CCAGTGCGCCCTCTGTAATAAT 60.485 50.000 4.18 0.00 32.14 1.28
1217 1311 3.877508 AGTGCGCCCTCTGTAATAATTTC 59.122 43.478 4.18 0.00 0.00 2.17
1218 1312 2.869801 TGCGCCCTCTGTAATAATTTCG 59.130 45.455 4.18 0.00 0.00 3.46
1221 1315 3.247648 CGCCCTCTGTAATAATTTCGTGG 59.752 47.826 0.00 0.00 0.00 4.94
1224 1318 4.506654 CCCTCTGTAATAATTTCGTGGTCG 59.493 45.833 0.00 0.00 38.55 4.79
1318 1412 0.325272 GAGTGAGTGGTTTCCCCCTC 59.675 60.000 0.00 0.00 33.47 4.30
1359 1455 1.606885 CCATGCGGCCTTGGTGAAAT 61.607 55.000 0.00 0.00 32.94 2.17
1360 1456 0.179129 CATGCGGCCTTGGTGAAATC 60.179 55.000 0.00 0.00 0.00 2.17
1469 1566 3.753797 GGAGATTGTCCAAGACCAAGAAC 59.246 47.826 0.00 0.00 46.10 3.01
1490 1587 1.913419 TGGATAGTGGGTCTTGTTCCC 59.087 52.381 0.00 0.00 44.81 3.97
1491 1588 2.197465 GGATAGTGGGTCTTGTTCCCT 58.803 52.381 2.65 0.00 44.84 4.20
1496 1597 0.110486 TGGGTCTTGTTCCCTGCTTC 59.890 55.000 2.65 0.00 44.84 3.86
1625 1729 5.067674 GCAAGGAGTATTCATTTGGTGCATA 59.932 40.000 0.00 0.00 0.00 3.14
1746 1850 4.582701 AGATGACTTCCTGAGCTATTCG 57.417 45.455 0.00 0.00 0.00 3.34
1844 1948 1.008538 GAACTGCAGCAACCAACGG 60.009 57.895 15.27 0.00 0.00 4.44
1870 1974 1.347320 CCGCTCTTCTGTTTCGGTAC 58.653 55.000 0.00 0.00 35.75 3.34
1875 1979 3.576648 CTCTTCTGTTTCGGTACCTGAC 58.423 50.000 10.90 6.30 0.00 3.51
1958 2062 3.194861 TGCATTCTACCTACATGAACGC 58.805 45.455 0.00 0.00 30.85 4.84
2068 2172 4.686839 TCTCATACAGTCTCAACAGTCG 57.313 45.455 0.00 0.00 0.00 4.18
2255 2360 6.146347 GGTTTGATTATAGGAAGATCGCACTC 59.854 42.308 0.00 0.00 0.00 3.51
2332 2438 2.161855 CAGCCTGCACAAATCACCTTA 58.838 47.619 0.00 0.00 0.00 2.69
2446 2552 1.743394 CGTTTTATGGGCCTCAGGTTC 59.257 52.381 4.53 0.00 0.00 3.62
2550 2656 2.460918 GATGTCATCCTACGTGTTCCG 58.539 52.381 0.00 0.00 44.03 4.30
2825 2937 5.532406 TGACTACTGCAAAAATCTTGAGCTT 59.468 36.000 0.00 0.00 0.00 3.74
2950 3145 3.054139 AGCAGTCAATAGCTCCCAATTGA 60.054 43.478 7.12 5.68 39.24 2.57
2954 3149 3.620488 TCAATAGCTCCCAATTGACCAC 58.380 45.455 7.12 0.00 37.23 4.16
2986 3181 5.416271 TTGTATTCACAACTACTCCCTCC 57.584 43.478 0.00 0.00 39.75 4.30
2987 3182 3.446161 TGTATTCACAACTACTCCCTCCG 59.554 47.826 0.00 0.00 0.00 4.63
2988 3183 2.005370 TTCACAACTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
2989 3184 2.005370 TCACAACTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
2990 3185 1.891150 TCACAACTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
2991 3186 1.067071 CACAACTACTCCCTCCGTTCC 60.067 57.143 0.00 0.00 0.00 3.62
2992 3187 1.203149 ACAACTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
2993 3188 2.042162 ACAACTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
2994 3189 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
2995 3190 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2996 3191 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2997 3192 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2998 3193 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2999 3194 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3000 3195 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3001 3196 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3002 3197 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3003 3198 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3004 3199 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3005 3200 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3006 3201 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3007 3202 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3008 3203 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3009 3204 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3010 3205 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3011 3206 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3025 3220 9.698309 TTGTCTTTCTAGAGATTTCAGTAAGTG 57.302 33.333 0.00 0.00 0.00 3.16
3026 3221 9.078990 TGTCTTTCTAGAGATTTCAGTAAGTGA 57.921 33.333 0.00 0.00 0.00 3.41
3027 3222 9.349145 GTCTTTCTAGAGATTTCAGTAAGTGAC 57.651 37.037 0.00 0.00 33.71 3.67
3028 3223 9.303116 TCTTTCTAGAGATTTCAGTAAGTGACT 57.697 33.333 0.00 0.00 39.82 3.41
3031 3226 8.199176 TCTAGAGATTTCAGTAAGTGACTACG 57.801 38.462 0.00 0.00 35.64 3.51
3032 3227 6.821031 AGAGATTTCAGTAAGTGACTACGT 57.179 37.500 0.00 0.00 35.64 3.57
3033 3228 7.918536 AGAGATTTCAGTAAGTGACTACGTA 57.081 36.000 0.00 0.00 35.64 3.57
3034 3229 7.750769 AGAGATTTCAGTAAGTGACTACGTAC 58.249 38.462 0.00 0.00 40.60 3.67
3035 3230 6.541086 AGATTTCAGTAAGTGACTACGTACG 58.459 40.000 15.01 15.01 43.61 3.67
3036 3231 4.668576 TTCAGTAAGTGACTACGTACGG 57.331 45.455 21.06 5.00 43.61 4.02
3037 3232 3.925379 TCAGTAAGTGACTACGTACGGA 58.075 45.455 21.06 10.81 43.61 4.69
3038 3233 3.928992 TCAGTAAGTGACTACGTACGGAG 59.071 47.826 25.90 25.90 43.61 4.63
3039 3234 2.675348 AGTAAGTGACTACGTACGGAGC 59.325 50.000 27.33 19.29 43.61 4.70
3040 3235 1.527034 AAGTGACTACGTACGGAGCA 58.473 50.000 27.33 21.55 0.00 4.26
3041 3236 1.527034 AGTGACTACGTACGGAGCAA 58.473 50.000 27.33 12.96 0.00 3.91
3042 3237 1.881973 AGTGACTACGTACGGAGCAAA 59.118 47.619 27.33 10.27 0.00 3.68
3043 3238 2.294233 AGTGACTACGTACGGAGCAAAA 59.706 45.455 27.33 7.64 0.00 2.44
3044 3239 3.057033 AGTGACTACGTACGGAGCAAAAT 60.057 43.478 27.33 7.40 0.00 1.82
3045 3240 3.060363 GTGACTACGTACGGAGCAAAATG 59.940 47.826 27.33 3.03 0.00 2.32
3046 3241 3.057386 TGACTACGTACGGAGCAAAATGA 60.057 43.478 27.33 0.00 0.00 2.57
3047 3242 3.508762 ACTACGTACGGAGCAAAATGAG 58.491 45.455 27.33 1.42 0.00 2.90
3048 3243 2.450609 ACGTACGGAGCAAAATGAGT 57.549 45.000 21.06 0.00 0.00 3.41
3049 3244 2.066262 ACGTACGGAGCAAAATGAGTG 58.934 47.619 21.06 0.00 0.00 3.51
3050 3245 2.288579 ACGTACGGAGCAAAATGAGTGA 60.289 45.455 21.06 0.00 0.00 3.41
3051 3246 2.734606 CGTACGGAGCAAAATGAGTGAA 59.265 45.455 7.57 0.00 0.00 3.18
3052 3247 3.370978 CGTACGGAGCAAAATGAGTGAAT 59.629 43.478 7.57 0.00 0.00 2.57
3053 3248 4.492570 CGTACGGAGCAAAATGAGTGAATC 60.493 45.833 7.57 0.00 0.00 2.52
3054 3249 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3055 3250 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3056 3251 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3057 3252 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3058 3253 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3096 3291 9.682465 TCTATATACATCTGTATGTGGTAGTCC 57.318 37.037 12.10 0.00 45.99 3.85
3097 3292 9.462606 CTATATACATCTGTATGTGGTAGTCCA 57.537 37.037 12.10 0.00 45.99 4.02
3098 3293 8.901472 ATATACATCTGTATGTGGTAGTCCAT 57.099 34.615 12.10 0.00 45.99 3.41
3099 3294 5.957771 ACATCTGTATGTGGTAGTCCATT 57.042 39.130 0.00 0.00 44.79 3.16
3100 3295 6.313519 ACATCTGTATGTGGTAGTCCATTT 57.686 37.500 0.00 0.00 44.79 2.32
3101 3296 6.115446 ACATCTGTATGTGGTAGTCCATTTG 58.885 40.000 0.00 0.00 44.79 2.32
3102 3297 6.070251 ACATCTGTATGTGGTAGTCCATTTGA 60.070 38.462 0.00 0.00 44.79 2.69
3103 3298 6.367374 TCTGTATGTGGTAGTCCATTTGAA 57.633 37.500 0.00 0.00 46.20 2.69
3104 3299 6.774673 TCTGTATGTGGTAGTCCATTTGAAA 58.225 36.000 0.00 0.00 46.20 2.69
3105 3300 7.402054 TCTGTATGTGGTAGTCCATTTGAAAT 58.598 34.615 0.00 0.00 46.20 2.17
3106 3301 7.552687 TCTGTATGTGGTAGTCCATTTGAAATC 59.447 37.037 0.00 0.00 46.20 2.17
3107 3302 7.402054 TGTATGTGGTAGTCCATTTGAAATCT 58.598 34.615 0.00 0.00 46.20 2.40
3108 3303 7.552687 TGTATGTGGTAGTCCATTTGAAATCTC 59.447 37.037 0.00 0.00 46.20 2.75
3109 3304 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3110 3305 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3111 3306 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
3112 3307 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
3113 3308 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
3114 3309 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3118 3313 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
3119 3314 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3134 3329 9.285770 CTAAAAAGACAAATATTTAGGAACGGC 57.714 33.333 0.00 0.00 33.69 5.68
3135 3330 5.479716 AAGACAAATATTTAGGAACGGCG 57.520 39.130 4.80 4.80 0.00 6.46
3136 3331 3.875134 AGACAAATATTTAGGAACGGCGG 59.125 43.478 13.24 0.00 0.00 6.13
3137 3332 2.946990 ACAAATATTTAGGAACGGCGGG 59.053 45.455 13.24 0.00 0.00 6.13
3138 3333 3.207778 CAAATATTTAGGAACGGCGGGA 58.792 45.455 13.24 0.00 0.00 5.14
3139 3334 2.833631 ATATTTAGGAACGGCGGGAG 57.166 50.000 13.24 0.00 0.00 4.30
3553 3748 2.029828 GCCACCATATACCACTCTCTCG 60.030 54.545 0.00 0.00 0.00 4.04
3599 3797 0.107165 GCCAACCACTGGGGATCTAC 60.107 60.000 1.10 0.00 46.54 2.59
3606 3804 5.420215 ACCACTGGGGATCTACTAGTAAT 57.580 43.478 1.10 1.13 41.15 1.89
3611 3809 4.413760 TGGGGATCTACTAGTAATTCCGG 58.586 47.826 18.08 0.00 0.00 5.14
4142 4345 2.111756 CTCAGTTTGCGTTTGTTGAGC 58.888 47.619 0.00 0.00 0.00 4.26
4149 4352 1.002576 TGCGTTTGTTGAGCTGTGATG 60.003 47.619 0.00 0.00 0.00 3.07
4174 4377 4.517952 TGAGCTGCAGAATCTAGATAGC 57.482 45.455 20.43 14.17 0.00 2.97
4176 4379 4.022155 TGAGCTGCAGAATCTAGATAGCTG 60.022 45.833 24.91 23.46 39.85 4.24
4192 4395 0.594796 GCTGCGGGCAATTTTATCGG 60.595 55.000 0.00 0.00 41.35 4.18
4208 4411 9.976511 AATTTTATCGGTTCTCGTGATATTCTA 57.023 29.630 0.00 0.00 40.32 2.10
4308 4512 6.762661 ACTTTCAACCCACAAAATCAGAAATG 59.237 34.615 0.00 0.00 0.00 2.32
4556 4760 4.096558 TTCGCGCCGCCATCAAAC 62.097 61.111 2.28 0.00 0.00 2.93
4653 4860 3.120786 GCAGCAACAACAAGATCAAATGC 60.121 43.478 0.00 0.00 0.00 3.56
4657 4864 4.624015 CAACAACAAGATCAAATGCTGGT 58.376 39.130 0.00 0.00 0.00 4.00
4689 4896 1.712977 GACATACCAGCAGCAGCAGC 61.713 60.000 3.17 0.46 45.49 5.25
4690 4897 1.747745 CATACCAGCAGCAGCAGCA 60.748 57.895 12.92 0.00 45.49 4.41
4691 4898 1.451567 ATACCAGCAGCAGCAGCAG 60.452 57.895 12.92 3.65 45.49 4.24
4733 4940 0.942252 GATTATCCAACCCGTTCGGC 59.058 55.000 5.66 0.00 33.26 5.54
4739 4946 3.697747 AACCCGTTCGGCGATCCA 61.698 61.111 11.76 0.00 44.77 3.41
4833 5040 9.979578 ATCTTTGCTGTATCTTACTCTAATCAG 57.020 33.333 0.00 0.00 0.00 2.90
4834 5041 9.190317 TCTTTGCTGTATCTTACTCTAATCAGA 57.810 33.333 0.00 0.00 0.00 3.27
4835 5042 9.979578 CTTTGCTGTATCTTACTCTAATCAGAT 57.020 33.333 0.00 0.00 0.00 2.90
4844 5051 8.768501 TCTTACTCTAATCAGATTTAGCCTGA 57.231 34.615 0.00 0.00 43.84 3.86
4845 5052 9.201989 TCTTACTCTAATCAGATTTAGCCTGAA 57.798 33.333 0.00 0.00 43.07 3.02
4846 5053 9.995003 CTTACTCTAATCAGATTTAGCCTGAAT 57.005 33.333 0.00 0.00 43.07 2.57
4848 5055 8.674263 ACTCTAATCAGATTTAGCCTGAATTG 57.326 34.615 0.00 0.00 43.07 2.32
4849 5056 7.228308 ACTCTAATCAGATTTAGCCTGAATTGC 59.772 37.037 0.00 0.00 43.07 3.56
4850 5057 7.056006 TCTAATCAGATTTAGCCTGAATTGCA 58.944 34.615 0.00 0.00 43.07 4.08
4851 5058 4.970662 TCAGATTTAGCCTGAATTGCAC 57.029 40.909 0.00 0.00 37.68 4.57
4852 5059 4.334552 TCAGATTTAGCCTGAATTGCACA 58.665 39.130 0.00 0.00 37.68 4.57
4853 5060 4.766373 TCAGATTTAGCCTGAATTGCACAA 59.234 37.500 0.00 0.00 37.68 3.33
4854 5061 5.419788 TCAGATTTAGCCTGAATTGCACAAT 59.580 36.000 0.00 0.00 37.68 2.71
4855 5062 5.747197 CAGATTTAGCCTGAATTGCACAATC 59.253 40.000 0.00 0.00 33.65 2.67
4856 5063 5.655532 AGATTTAGCCTGAATTGCACAATCT 59.344 36.000 0.00 6.92 36.08 2.40
4857 5064 5.726980 TTTAGCCTGAATTGCACAATCTT 57.273 34.783 0.00 0.00 0.00 2.40
4858 5065 5.726980 TTAGCCTGAATTGCACAATCTTT 57.273 34.783 0.00 0.00 0.00 2.52
4859 5066 3.921677 AGCCTGAATTGCACAATCTTTG 58.078 40.909 0.00 0.00 0.00 2.77
4860 5067 2.414138 GCCTGAATTGCACAATCTTTGC 59.586 45.455 0.00 0.00 40.63 3.68
4861 5068 2.997986 CCTGAATTGCACAATCTTTGCC 59.002 45.455 0.00 0.00 39.39 4.52
4942 5153 9.783256 AACTTGTATAGTTTGAACTTTGTTGAC 57.217 29.630 1.20 0.00 44.73 3.18
4962 5173 6.870971 TGACACTGTAAACCTTATGGAAAC 57.129 37.500 0.81 0.00 37.04 2.78
4988 5199 8.183104 TGTGTAACATGTTTGGGAAATGATAA 57.817 30.769 17.78 0.00 45.67 1.75
4998 5209 9.632807 TGTTTGGGAAATGATAAAATCGTTTAG 57.367 29.630 7.00 0.00 45.70 1.85
5002 5213 9.184523 TGGGAAATGATAAAATCGTTTAGATGT 57.815 29.630 7.00 0.00 45.70 3.06
5012 5223 6.653273 AATCGTTTAGATGTCATGACACAG 57.347 37.500 30.09 15.41 45.05 3.66
5073 5284 6.856426 GCATGTTTATCATCATCATCACACAG 59.144 38.462 0.00 0.00 34.09 3.66
5147 5358 3.681034 GCAGTAGCACAAGAGATGGTGAT 60.681 47.826 0.00 0.00 41.58 3.06
5148 5359 4.118410 CAGTAGCACAAGAGATGGTGATC 58.882 47.826 0.00 0.00 37.18 2.92
5149 5360 2.706339 AGCACAAGAGATGGTGATCC 57.294 50.000 0.00 0.00 37.18 3.36
5282 5493 7.832769 TGTGTTCTACATATGTACAGTAGCAA 58.167 34.615 11.62 7.98 36.16 3.91
5283 5494 7.973944 TGTGTTCTACATATGTACAGTAGCAAG 59.026 37.037 11.62 1.06 36.16 4.01
5286 5497 9.582431 GTTCTACATATGTACAGTAGCAAGAAA 57.418 33.333 11.62 3.20 36.16 2.52
5355 5567 2.515398 CCCACTTCACCCAGTGCA 59.485 61.111 0.00 0.00 42.63 4.57
5366 5578 3.149196 CACCCAGTGCAATGAAACTAGT 58.851 45.455 17.16 0.12 0.00 2.57
5387 5603 2.104792 TGGTTCCAGTTCAGTCCTCTTG 59.895 50.000 0.00 0.00 0.00 3.02
5424 5640 0.824182 CTACGAATCCCTCCGCCTCT 60.824 60.000 0.00 0.00 0.00 3.69
5557 5773 1.410004 ACCGTCACTCCAAGAACTCA 58.590 50.000 0.00 0.00 0.00 3.41
5591 5807 1.341285 TGGGTTTGATGCCAGGATGAG 60.341 52.381 0.00 0.00 39.69 2.90
5603 5819 3.006752 GCCAGGATGAGAACTAGAGATGG 59.993 52.174 0.00 0.00 39.69 3.51
5630 5846 6.600350 TGCGCGTGATTTATACTTTGTTAAA 58.400 32.000 8.43 0.00 0.00 1.52
5631 5847 7.244898 TGCGCGTGATTTATACTTTGTTAAAT 58.755 30.769 8.43 0.00 32.21 1.40
5632 5848 7.751348 TGCGCGTGATTTATACTTTGTTAAATT 59.249 29.630 8.43 0.00 30.25 1.82
5633 5849 8.580431 GCGCGTGATTTATACTTTGTTAAATTT 58.420 29.630 8.43 0.00 30.25 1.82
5634 5850 9.865642 CGCGTGATTTATACTTTGTTAAATTTG 57.134 29.630 0.00 0.00 30.25 2.32
5641 5857 6.927933 ATACTTTGTTAAATTTGTCGCAGC 57.072 33.333 0.00 0.00 0.00 5.25
5642 5858 4.677584 ACTTTGTTAAATTTGTCGCAGCA 58.322 34.783 0.00 0.00 0.00 4.41
5643 5859 5.105752 ACTTTGTTAAATTTGTCGCAGCAA 58.894 33.333 0.00 0.00 0.00 3.91
5644 5860 5.752955 ACTTTGTTAAATTTGTCGCAGCAAT 59.247 32.000 0.00 0.00 0.00 3.56
5645 5861 5.573296 TTGTTAAATTTGTCGCAGCAATG 57.427 34.783 0.00 0.00 0.00 2.82
5671 5887 2.544267 CGATCAATAAGCCCGGAAGAAC 59.456 50.000 0.73 0.00 0.00 3.01
5682 5899 3.504520 GCCCGGAAGAACTGAATTTTACA 59.495 43.478 0.73 0.00 0.00 2.41
5706 5923 0.394352 ATTGCTAAACAGGGGAGCCG 60.394 55.000 0.00 0.00 35.24 5.52
5752 5969 0.323360 TATTGTGGGGCTGTCCTTGC 60.323 55.000 0.00 0.00 35.33 4.01
5774 5991 2.287009 GCTGCAAATACGTGCCTATTCC 60.287 50.000 0.00 0.00 44.26 3.01
5779 5996 0.470456 ATACGTGCCTATTCCGGGGA 60.470 55.000 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.208632 CTAGCAAAGCAGGGGACG 57.791 61.111 0.00 0.00 0.00 4.79
9 10 2.768834 GGGGAACGAGCTAGCAAAG 58.231 57.895 18.83 9.95 0.00 2.77
20 21 1.374252 CTCTGTTGGTCGGGGAACG 60.374 63.158 0.00 0.00 46.11 3.95
21 22 1.671379 GCTCTGTTGGTCGGGGAAC 60.671 63.158 0.00 0.00 0.00 3.62
22 23 2.144078 TGCTCTGTTGGTCGGGGAA 61.144 57.895 0.00 0.00 0.00 3.97
23 24 2.525629 TGCTCTGTTGGTCGGGGA 60.526 61.111 0.00 0.00 0.00 4.81
24 25 2.358737 GTGCTCTGTTGGTCGGGG 60.359 66.667 0.00 0.00 0.00 5.73
25 26 2.358737 GGTGCTCTGTTGGTCGGG 60.359 66.667 0.00 0.00 0.00 5.14
26 27 1.669115 CAGGTGCTCTGTTGGTCGG 60.669 63.158 0.43 0.00 38.64 4.79
27 28 2.320587 GCAGGTGCTCTGTTGGTCG 61.321 63.158 8.88 0.00 45.08 4.79
28 29 0.819259 TTGCAGGTGCTCTGTTGGTC 60.819 55.000 3.18 0.00 45.08 4.02
29 30 0.820891 CTTGCAGGTGCTCTGTTGGT 60.821 55.000 3.18 0.00 45.08 3.67
30 31 1.521450 CCTTGCAGGTGCTCTGTTGG 61.521 60.000 3.18 5.78 45.08 3.77
31 32 1.954528 CCTTGCAGGTGCTCTGTTG 59.045 57.895 3.18 0.00 45.08 3.33
32 33 1.900498 GCCTTGCAGGTGCTCTGTT 60.900 57.895 3.18 0.00 45.08 3.16
33 34 2.282040 GCCTTGCAGGTGCTCTGT 60.282 61.111 3.18 0.00 45.08 3.41
34 35 3.060615 GGCCTTGCAGGTGCTCTG 61.061 66.667 3.18 3.74 46.03 3.35
35 36 3.255397 AGGCCTTGCAGGTGCTCT 61.255 61.111 0.00 3.11 42.66 4.09
36 37 2.749441 GAGGCCTTGCAGGTGCTC 60.749 66.667 6.77 0.00 42.66 4.26
37 38 4.711949 CGAGGCCTTGCAGGTGCT 62.712 66.667 6.77 0.00 42.66 4.40
39 40 2.743928 GACGAGGCCTTGCAGGTG 60.744 66.667 20.81 0.51 37.80 4.00
40 41 2.925170 AGACGAGGCCTTGCAGGT 60.925 61.111 20.81 6.97 37.80 4.00
41 42 2.125350 GAGACGAGGCCTTGCAGG 60.125 66.667 20.81 3.60 38.80 4.85
42 43 0.739112 GAAGAGACGAGGCCTTGCAG 60.739 60.000 20.81 8.35 0.00 4.41
43 44 1.293498 GAAGAGACGAGGCCTTGCA 59.707 57.895 20.81 0.00 0.00 4.08
44 45 1.448717 GGAAGAGACGAGGCCTTGC 60.449 63.158 20.81 12.70 0.00 4.01
45 46 1.153745 CGGAAGAGACGAGGCCTTG 60.154 63.158 19.26 19.26 0.00 3.61
46 47 2.352032 CCGGAAGAGACGAGGCCTT 61.352 63.158 6.77 0.00 0.00 4.35
47 48 2.207501 TACCGGAAGAGACGAGGCCT 62.208 60.000 9.46 3.86 0.00 5.19
48 49 1.318158 TTACCGGAAGAGACGAGGCC 61.318 60.000 9.46 0.00 0.00 5.19
49 50 0.100861 CTTACCGGAAGAGACGAGGC 59.899 60.000 9.46 0.00 37.33 4.70
50 51 1.747709 TCTTACCGGAAGAGACGAGG 58.252 55.000 9.46 0.00 39.36 4.63
57 58 1.093159 GCTCGTCTCTTACCGGAAGA 58.907 55.000 9.46 12.19 42.13 2.87
58 59 0.100861 GGCTCGTCTCTTACCGGAAG 59.899 60.000 9.46 7.96 36.38 3.46
59 60 0.609957 TGGCTCGTCTCTTACCGGAA 60.610 55.000 9.46 0.00 0.00 4.30
60 61 1.001764 TGGCTCGTCTCTTACCGGA 60.002 57.895 9.46 0.00 0.00 5.14
61 62 1.139095 GTGGCTCGTCTCTTACCGG 59.861 63.158 0.00 0.00 0.00 5.28
62 63 0.456221 ATGTGGCTCGTCTCTTACCG 59.544 55.000 0.00 0.00 0.00 4.02
63 64 1.534175 CGATGTGGCTCGTCTCTTACC 60.534 57.143 7.14 0.00 34.00 2.85
64 65 1.400846 TCGATGTGGCTCGTCTCTTAC 59.599 52.381 7.14 0.00 39.62 2.34
65 66 1.746470 TCGATGTGGCTCGTCTCTTA 58.254 50.000 7.14 0.00 39.62 2.10
66 67 0.888619 TTCGATGTGGCTCGTCTCTT 59.111 50.000 7.14 0.00 39.62 2.85
72 73 1.656652 ATTTCCTTCGATGTGGCTCG 58.343 50.000 0.00 0.00 39.99 5.03
82 83 2.678336 GGCTGACAACCTATTTCCTTCG 59.322 50.000 0.00 0.00 0.00 3.79
95 96 5.246203 ACTCAATAACTACTCAGGCTGACAA 59.754 40.000 14.43 3.38 0.00 3.18
102 103 6.549364 AGATCCTCACTCAATAACTACTCAGG 59.451 42.308 0.00 0.00 0.00 3.86
108 109 7.201866 GCAAGAGAGATCCTCACTCAATAACTA 60.202 40.741 12.08 0.00 44.40 2.24
109 110 6.406849 GCAAGAGAGATCCTCACTCAATAACT 60.407 42.308 12.08 0.00 44.40 2.24
111 112 5.660417 AGCAAGAGAGATCCTCACTCAATAA 59.340 40.000 12.08 0.00 44.40 1.40
112 113 5.207354 AGCAAGAGAGATCCTCACTCAATA 58.793 41.667 12.08 0.00 44.40 1.90
135 136 6.959639 AAGACTGGAGTTGAAAAGCATTTA 57.040 33.333 0.00 0.00 37.28 1.40
136 137 5.859205 AAGACTGGAGTTGAAAAGCATTT 57.141 34.783 0.00 0.00 42.41 2.32
141 142 7.277174 ACCATAAAAGACTGGAGTTGAAAAG 57.723 36.000 0.00 0.00 36.35 2.27
207 208 4.341806 TCAGGTTGAAGTGTACGTTTAGGA 59.658 41.667 0.00 0.00 0.00 2.94
227 228 5.326200 ACGGATGGAGTACTAAAAGTCAG 57.674 43.478 0.00 0.00 0.00 3.51
313 314 3.270027 CATCCGGCTTTGATCTGTTGTA 58.730 45.455 0.00 0.00 0.00 2.41
314 315 2.086869 CATCCGGCTTTGATCTGTTGT 58.913 47.619 0.00 0.00 0.00 3.32
318 319 1.755179 AACCATCCGGCTTTGATCTG 58.245 50.000 0.00 0.00 34.57 2.90
328 329 0.180406 ATCGAGGGAAAACCATCCGG 59.820 55.000 0.00 0.00 43.89 5.14
376 377 9.239002 TGTTTTTATATTTCGTTTGTCTGGTTG 57.761 29.630 0.00 0.00 0.00 3.77
394 401 8.428063 TCAGATCCACCAAAAATGTGTTTTTAT 58.572 29.630 0.00 0.00 43.69 1.40
437 444 1.325640 CGACGATGCTTGTTGATCAGG 59.674 52.381 0.00 0.00 0.00 3.86
440 447 1.590238 CTCCGACGATGCTTGTTGATC 59.410 52.381 0.00 0.00 0.00 2.92
442 449 0.317160 ACTCCGACGATGCTTGTTGA 59.683 50.000 0.00 0.00 0.00 3.18
443 450 1.654105 GTACTCCGACGATGCTTGTTG 59.346 52.381 0.00 0.00 0.00 3.33
445 452 1.132643 GAGTACTCCGACGATGCTTGT 59.867 52.381 12.13 0.00 0.00 3.16
446 453 1.132453 TGAGTACTCCGACGATGCTTG 59.868 52.381 20.11 0.00 0.00 4.01
447 454 1.132643 GTGAGTACTCCGACGATGCTT 59.867 52.381 20.11 0.00 0.00 3.91
452 459 2.393768 GCCGTGAGTACTCCGACGA 61.394 63.158 27.92 6.55 32.79 4.20
454 461 1.154073 GTGCCGTGAGTACTCCGAC 60.154 63.158 25.72 18.76 0.00 4.79
455 462 1.583495 CTGTGCCGTGAGTACTCCGA 61.583 60.000 25.72 7.01 0.00 4.55
456 463 1.154016 CTGTGCCGTGAGTACTCCG 60.154 63.158 20.11 20.24 0.00 4.63
457 464 1.446272 GCTGTGCCGTGAGTACTCC 60.446 63.158 20.11 10.38 0.00 3.85
458 465 0.734253 CTGCTGTGCCGTGAGTACTC 60.734 60.000 16.32 16.32 0.00 2.59
459 466 1.290324 CTGCTGTGCCGTGAGTACT 59.710 57.895 0.00 0.00 0.00 2.73
460 467 1.738099 CCTGCTGTGCCGTGAGTAC 60.738 63.158 0.00 0.00 0.00 2.73
462 469 4.996434 GCCTGCTGTGCCGTGAGT 62.996 66.667 0.00 0.00 0.00 3.41
488 495 1.443872 GACGCCGATGACGAACAGT 60.444 57.895 0.00 0.00 42.66 3.55
604 654 1.448893 GATACTTCGGCGCCCACAA 60.449 57.895 23.46 10.51 0.00 3.33
608 658 4.963428 CCGGATACTTCGGCGCCC 62.963 72.222 23.46 4.12 41.07 6.13
617 667 1.072505 TAGGGGAGGAGCCGGATACT 61.073 60.000 2.61 2.61 37.63 2.12
620 670 2.201771 GTAGGGGAGGAGCCGGAT 59.798 66.667 5.05 0.00 37.63 4.18
621 671 4.517934 CGTAGGGGAGGAGCCGGA 62.518 72.222 5.05 0.00 37.63 5.14
834 884 1.550374 AGGGAGAGGAGGAGGGGAA 60.550 63.158 0.00 0.00 0.00 3.97
893 948 2.158959 GCACGACGGACGATGGAAG 61.159 63.158 6.90 0.00 45.77 3.46
895 950 4.470170 CGCACGACGGACGATGGA 62.470 66.667 6.90 0.00 45.77 3.41
1109 1164 4.643387 AGGTGTTGGCGGCAGGAC 62.643 66.667 12.87 12.60 0.00 3.85
1117 1172 4.043200 GCAAGGCGAGGTGTTGGC 62.043 66.667 0.00 0.00 0.00 4.52
1118 1173 1.926511 GATGCAAGGCGAGGTGTTGG 61.927 60.000 0.00 0.00 0.00 3.77
1134 1189 1.406065 ATGCAGGTCGGGAGGAGATG 61.406 60.000 0.00 0.00 0.00 2.90
1142 1197 0.609131 AGGTTGAAATGCAGGTCGGG 60.609 55.000 0.00 0.00 0.00 5.14
1154 1235 2.106338 TGCAGGACAATCAGAGGTTGAA 59.894 45.455 0.00 0.00 39.77 2.69
1155 1236 1.699083 TGCAGGACAATCAGAGGTTGA 59.301 47.619 0.00 0.00 40.85 3.18
1158 1239 2.957402 TTTGCAGGACAATCAGAGGT 57.043 45.000 0.00 0.00 38.31 3.85
1159 1240 3.760151 TCAATTTGCAGGACAATCAGAGG 59.240 43.478 0.00 0.00 38.31 3.69
1168 1262 3.921119 TGATGTGTCAATTTGCAGGAC 57.079 42.857 0.00 0.00 0.00 3.85
1194 1288 2.309528 TTATTACAGAGGGCGCACTG 57.690 50.000 21.85 23.27 39.65 3.66
1196 1290 3.303132 CGAAATTATTACAGAGGGCGCAC 60.303 47.826 10.83 5.15 0.00 5.34
1204 1298 5.163933 GCAACGACCACGAAATTATTACAGA 60.164 40.000 0.00 0.00 42.66 3.41
1205 1299 5.019498 GCAACGACCACGAAATTATTACAG 58.981 41.667 0.00 0.00 42.66 2.74
1206 1300 4.451435 TGCAACGACCACGAAATTATTACA 59.549 37.500 0.00 0.00 42.66 2.41
1207 1301 4.960329 TGCAACGACCACGAAATTATTAC 58.040 39.130 0.00 0.00 42.66 1.89
1208 1302 4.093703 CCTGCAACGACCACGAAATTATTA 59.906 41.667 0.00 0.00 42.66 0.98
1209 1303 3.119990 CCTGCAACGACCACGAAATTATT 60.120 43.478 0.00 0.00 42.66 1.40
1211 1305 1.801771 CCTGCAACGACCACGAAATTA 59.198 47.619 0.00 0.00 42.66 1.40
1214 1308 0.250124 ATCCTGCAACGACCACGAAA 60.250 50.000 0.00 0.00 42.66 3.46
1217 1311 0.110238 CAAATCCTGCAACGACCACG 60.110 55.000 0.00 0.00 45.75 4.94
1218 1312 0.240945 CCAAATCCTGCAACGACCAC 59.759 55.000 0.00 0.00 0.00 4.16
1221 1315 3.059597 CGATATCCAAATCCTGCAACGAC 60.060 47.826 0.00 0.00 0.00 4.34
1224 1318 2.030805 GGCGATATCCAAATCCTGCAAC 60.031 50.000 0.00 0.00 0.00 4.17
1293 1387 3.208747 GGAAACCACTCACTCCTGAAA 57.791 47.619 0.00 0.00 0.00 2.69
1318 1412 1.813859 CTGCATTGCATGGTCAGGG 59.186 57.895 12.53 0.00 38.13 4.45
1469 1566 2.092914 GGGAACAAGACCCACTATCCAG 60.093 54.545 0.00 0.00 46.05 3.86
1490 1587 8.618702 ATCAATCAACATAGATAAGGAAGCAG 57.381 34.615 0.00 0.00 0.00 4.24
1625 1729 2.949447 AGTCAATGCACACCCTTTTCT 58.051 42.857 0.00 0.00 0.00 2.52
1746 1850 4.022849 AGCTGCAAAATGTTTCCTCTGTAC 60.023 41.667 1.02 0.00 0.00 2.90
1870 1974 4.838486 GGAGAGCGTCGCGTCAGG 62.838 72.222 19.95 0.00 0.00 3.86
1875 1979 4.838486 GTGGAGGAGAGCGTCGCG 62.838 72.222 12.30 0.00 0.00 5.87
1958 2062 2.618053 AGAACCCTAAAGCATTCGACG 58.382 47.619 0.00 0.00 0.00 5.12
2068 2172 3.088532 TCAGCAAACCATAATGGGTGTC 58.911 45.455 0.00 0.00 35.52 3.67
2255 2360 6.660949 ACAAGAGGAAAGAATGGTATCAAAGG 59.339 38.462 0.00 0.00 0.00 3.11
2332 2438 7.944554 ACTTACAAGGGCTAATGCATATTGTAT 59.055 33.333 0.00 0.00 39.83 2.29
2424 2530 1.910671 ACCTGAGGCCCATAAAACGTA 59.089 47.619 0.00 0.00 0.00 3.57
2550 2656 6.804677 TCACAAATTGATTATGGGCATACAC 58.195 36.000 0.00 0.00 0.00 2.90
2825 2937 2.158475 AGGAAACTGGAATGTCTTGGCA 60.158 45.455 0.00 0.00 41.13 4.92
2834 2946 4.202567 TGCCTCAAAGTAGGAAACTGGAAT 60.203 41.667 0.00 0.00 43.88 3.01
2950 3145 5.419788 TGTGAATACAACTATAGGTCGTGGT 59.580 40.000 4.43 0.00 32.88 4.16
2977 3172 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2978 3173 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2979 3174 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2980 3175 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2981 3176 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2982 3177 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2983 3178 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2984 3179 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2985 3180 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2999 3194 9.698309 CACTTACTGAAATCTCTAGAAAGACAA 57.302 33.333 0.00 0.00 0.00 3.18
3000 3195 9.078990 TCACTTACTGAAATCTCTAGAAAGACA 57.921 33.333 0.00 0.00 0.00 3.41
3001 3196 9.349145 GTCACTTACTGAAATCTCTAGAAAGAC 57.651 37.037 0.00 0.00 0.00 3.01
3002 3197 9.303116 AGTCACTTACTGAAATCTCTAGAAAGA 57.697 33.333 0.00 0.00 36.93 2.52
3005 3200 8.666573 CGTAGTCACTTACTGAAATCTCTAGAA 58.333 37.037 0.00 0.00 39.39 2.10
3006 3201 7.823310 ACGTAGTCACTTACTGAAATCTCTAGA 59.177 37.037 0.00 0.00 29.74 2.43
3007 3202 7.976826 ACGTAGTCACTTACTGAAATCTCTAG 58.023 38.462 0.00 0.00 29.74 2.43
3008 3203 7.918536 ACGTAGTCACTTACTGAAATCTCTA 57.081 36.000 0.00 0.00 29.74 2.43
3009 3204 6.821031 ACGTAGTCACTTACTGAAATCTCT 57.179 37.500 0.00 0.00 29.74 3.10
3010 3205 6.682020 CGTACGTAGTCACTTACTGAAATCTC 59.318 42.308 7.22 0.00 43.93 2.75
3011 3206 6.402983 CCGTACGTAGTCACTTACTGAAATCT 60.403 42.308 15.21 0.00 43.93 2.40
3012 3207 5.736358 CCGTACGTAGTCACTTACTGAAATC 59.264 44.000 15.21 0.00 43.93 2.17
3013 3208 5.412594 TCCGTACGTAGTCACTTACTGAAAT 59.587 40.000 15.21 0.00 43.93 2.17
3014 3209 4.754618 TCCGTACGTAGTCACTTACTGAAA 59.245 41.667 15.21 0.00 43.93 2.69
3015 3210 4.314961 TCCGTACGTAGTCACTTACTGAA 58.685 43.478 15.21 0.00 43.93 3.02
3016 3211 3.925379 TCCGTACGTAGTCACTTACTGA 58.075 45.455 15.21 0.00 43.93 3.41
3017 3212 3.484886 GCTCCGTACGTAGTCACTTACTG 60.485 52.174 15.21 0.00 43.93 2.74
3018 3213 2.675348 GCTCCGTACGTAGTCACTTACT 59.325 50.000 15.21 0.00 43.93 2.24
3019 3214 2.416547 TGCTCCGTACGTAGTCACTTAC 59.583 50.000 15.21 0.00 43.93 2.34
3020 3215 2.698803 TGCTCCGTACGTAGTCACTTA 58.301 47.619 15.21 0.00 43.93 2.24
3021 3216 1.527034 TGCTCCGTACGTAGTCACTT 58.473 50.000 15.21 0.00 43.93 3.16
3022 3217 1.527034 TTGCTCCGTACGTAGTCACT 58.473 50.000 15.21 0.00 43.93 3.41
3023 3218 2.336554 TTTGCTCCGTACGTAGTCAC 57.663 50.000 15.21 0.00 43.93 3.67
3024 3219 3.057386 TCATTTTGCTCCGTACGTAGTCA 60.057 43.478 15.21 7.62 43.93 3.41
3025 3220 3.504863 TCATTTTGCTCCGTACGTAGTC 58.495 45.455 15.21 5.03 43.93 2.59
3027 3222 3.303495 CACTCATTTTGCTCCGTACGTAG 59.697 47.826 15.21 9.26 0.00 3.51
3028 3223 3.057386 TCACTCATTTTGCTCCGTACGTA 60.057 43.478 15.21 0.00 0.00 3.57
3029 3224 2.066262 CACTCATTTTGCTCCGTACGT 58.934 47.619 15.21 0.00 0.00 3.57
3030 3225 2.333926 TCACTCATTTTGCTCCGTACG 58.666 47.619 8.69 8.69 0.00 3.67
3031 3226 4.631813 AGATTCACTCATTTTGCTCCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
3032 3227 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3033 3228 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3034 3229 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3035 3230 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3036 3231 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3070 3265 9.682465 GGACTACCACATACAGATGTATATAGA 57.318 37.037 5.21 0.00 44.82 1.98
3071 3266 9.462606 TGGACTACCACATACAGATGTATATAG 57.537 37.037 5.21 7.73 44.82 1.31
3092 3287 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3093 3288 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3108 3303 9.285770 GCCGTTCCTAAATATTTGTCTTTTTAG 57.714 33.333 11.05 0.00 33.47 1.85
3109 3304 7.964011 CGCCGTTCCTAAATATTTGTCTTTTTA 59.036 33.333 11.05 0.00 0.00 1.52
3110 3305 6.804783 CGCCGTTCCTAAATATTTGTCTTTTT 59.195 34.615 11.05 0.00 0.00 1.94
3111 3306 6.319399 CGCCGTTCCTAAATATTTGTCTTTT 58.681 36.000 11.05 0.00 0.00 2.27
3112 3307 5.163693 CCGCCGTTCCTAAATATTTGTCTTT 60.164 40.000 11.05 0.00 0.00 2.52
3113 3308 4.334481 CCGCCGTTCCTAAATATTTGTCTT 59.666 41.667 11.05 0.00 0.00 3.01
3114 3309 3.875134 CCGCCGTTCCTAAATATTTGTCT 59.125 43.478 11.05 0.00 0.00 3.41
3115 3310 3.002965 CCCGCCGTTCCTAAATATTTGTC 59.997 47.826 11.05 0.00 0.00 3.18
3116 3311 2.946990 CCCGCCGTTCCTAAATATTTGT 59.053 45.455 11.05 0.00 0.00 2.83
3117 3312 3.207778 TCCCGCCGTTCCTAAATATTTG 58.792 45.455 11.05 1.40 0.00 2.32
3118 3313 3.118149 ACTCCCGCCGTTCCTAAATATTT 60.118 43.478 5.89 5.89 0.00 1.40
3119 3314 2.436911 ACTCCCGCCGTTCCTAAATATT 59.563 45.455 0.00 0.00 0.00 1.28
3120 3315 2.044758 ACTCCCGCCGTTCCTAAATAT 58.955 47.619 0.00 0.00 0.00 1.28
3121 3316 1.488390 ACTCCCGCCGTTCCTAAATA 58.512 50.000 0.00 0.00 0.00 1.40
3122 3317 1.488390 TACTCCCGCCGTTCCTAAAT 58.512 50.000 0.00 0.00 0.00 1.40
3123 3318 1.488390 ATACTCCCGCCGTTCCTAAA 58.512 50.000 0.00 0.00 0.00 1.85
3124 3319 1.488390 AATACTCCCGCCGTTCCTAA 58.512 50.000 0.00 0.00 0.00 2.69
3125 3320 2.363306 TAATACTCCCGCCGTTCCTA 57.637 50.000 0.00 0.00 0.00 2.94
3126 3321 1.713297 ATAATACTCCCGCCGTTCCT 58.287 50.000 0.00 0.00 0.00 3.36
3127 3322 2.538512 AATAATACTCCCGCCGTTCC 57.461 50.000 0.00 0.00 0.00 3.62
3128 3323 4.124970 AGAAAATAATACTCCCGCCGTTC 58.875 43.478 0.00 0.00 0.00 3.95
3129 3324 4.146745 AGAAAATAATACTCCCGCCGTT 57.853 40.909 0.00 0.00 0.00 4.44
3130 3325 3.832615 AGAAAATAATACTCCCGCCGT 57.167 42.857 0.00 0.00 0.00 5.68
3131 3326 3.250040 CCAAGAAAATAATACTCCCGCCG 59.750 47.826 0.00 0.00 0.00 6.46
3132 3327 4.457466 TCCAAGAAAATAATACTCCCGCC 58.543 43.478 0.00 0.00 0.00 6.13
3133 3328 6.935208 AGTATCCAAGAAAATAATACTCCCGC 59.065 38.462 0.00 0.00 29.39 6.13
3134 3329 8.535690 GAGTATCCAAGAAAATAATACTCCCG 57.464 38.462 8.84 0.00 41.14 5.14
3240 3435 1.867233 GGTGGCTGCATATCAGTAACG 59.133 52.381 0.50 0.00 44.66 3.18
3553 3748 1.341089 GGTGGGGGTTCATCTTCTTCC 60.341 57.143 0.00 0.00 0.00 3.46
3599 3797 5.786264 ACATAGTGGACCGGAATTACTAG 57.214 43.478 9.46 7.82 0.00 2.57
3606 3804 1.066430 GCAGAACATAGTGGACCGGAA 60.066 52.381 9.46 0.00 0.00 4.30
3611 3809 3.334583 TGAAGGCAGAACATAGTGGAC 57.665 47.619 0.00 0.00 0.00 4.02
4102 4305 5.756918 TGAGCCATAGTCTTACTAGTGAGT 58.243 41.667 13.82 5.33 39.92 3.41
4142 4345 0.953960 TGCAGCTCAGCACATCACAG 60.954 55.000 0.00 0.00 40.11 3.66
4149 4352 2.159128 TCTAGATTCTGCAGCTCAGCAC 60.159 50.000 9.47 0.00 42.56 4.40
4170 4373 2.226437 CGATAAAATTGCCCGCAGCTAT 59.774 45.455 0.00 0.00 44.23 2.97
4174 4377 0.738389 ACCGATAAAATTGCCCGCAG 59.262 50.000 0.00 0.00 0.00 5.18
4176 4379 1.404035 AGAACCGATAAAATTGCCCGC 59.596 47.619 0.00 0.00 0.00 6.13
4192 4395 9.517609 AATGTAACAGTAGAATATCACGAGAAC 57.482 33.333 0.00 0.00 0.00 3.01
4279 4483 7.164803 TCTGATTTTGTGGGTTGAAAGTTTTT 58.835 30.769 0.00 0.00 0.00 1.94
4280 4484 6.706295 TCTGATTTTGTGGGTTGAAAGTTTT 58.294 32.000 0.00 0.00 0.00 2.43
4281 4485 6.293004 TCTGATTTTGTGGGTTGAAAGTTT 57.707 33.333 0.00 0.00 0.00 2.66
4282 4486 5.930837 TCTGATTTTGTGGGTTGAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
4283 4487 5.930837 TTCTGATTTTGTGGGTTGAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
4291 4495 7.170320 CACTTCTTTCATTTCTGATTTTGTGGG 59.830 37.037 0.00 0.00 0.00 4.61
4294 4498 7.495055 AGCACTTCTTTCATTTCTGATTTTGT 58.505 30.769 0.00 0.00 0.00 2.83
4308 4512 6.475727 GGTACCTTTTCAAAAGCACTTCTTTC 59.524 38.462 4.06 0.00 43.84 2.62
4374 4578 3.949113 TGCTGAGCAAATGCAGATGAATA 59.051 39.130 3.81 0.00 45.16 1.75
4577 4781 2.046604 TACTGCTGCTGCTGCTGG 60.047 61.111 30.69 24.00 41.07 4.85
4578 4782 0.108472 TAGTACTGCTGCTGCTGCTG 60.108 55.000 27.75 27.75 41.07 4.41
4579 4783 0.108424 GTAGTACTGCTGCTGCTGCT 60.108 55.000 27.67 14.24 41.07 4.24
4580 4784 1.086634 GGTAGTACTGCTGCTGCTGC 61.087 60.000 22.51 22.51 41.07 5.25
4581 4785 0.247460 TGGTAGTACTGCTGCTGCTG 59.753 55.000 18.66 18.66 42.70 4.41
4582 4786 0.534412 CTGGTAGTACTGCTGCTGCT 59.466 55.000 17.00 0.00 40.48 4.24
4644 4851 1.268896 CGGCATCACCAGCATTTGATC 60.269 52.381 0.00 0.00 39.03 2.92
4653 4860 3.129502 CTGTGGCGGCATCACCAG 61.130 66.667 17.19 14.04 39.03 4.00
4657 4864 0.461870 GTATGTCTGTGGCGGCATCA 60.462 55.000 17.19 14.10 0.00 3.07
4733 4940 1.202348 ACGAGAGCACTGAATGGATCG 60.202 52.381 0.00 0.00 35.21 3.69
4739 4946 0.881796 TCGTGACGAGAGCACTGAAT 59.118 50.000 2.39 0.00 36.46 2.57
4818 5025 9.373450 TCAGGCTAAATCTGATTAGAGTAAGAT 57.627 33.333 2.85 0.00 36.46 2.40
4819 5026 8.768501 TCAGGCTAAATCTGATTAGAGTAAGA 57.231 34.615 2.85 2.27 36.46 2.10
4820 5027 9.995003 ATTCAGGCTAAATCTGATTAGAGTAAG 57.005 33.333 2.85 0.00 40.46 2.34
4822 5029 9.770097 CAATTCAGGCTAAATCTGATTAGAGTA 57.230 33.333 2.85 0.00 40.46 2.59
4823 5030 7.228308 GCAATTCAGGCTAAATCTGATTAGAGT 59.772 37.037 2.85 0.00 40.46 3.24
4824 5031 7.228108 TGCAATTCAGGCTAAATCTGATTAGAG 59.772 37.037 2.85 5.70 40.46 2.43
4825 5032 7.012704 GTGCAATTCAGGCTAAATCTGATTAGA 59.987 37.037 2.85 0.00 40.46 2.10
4826 5033 7.137426 GTGCAATTCAGGCTAAATCTGATTAG 58.863 38.462 2.85 3.46 40.46 1.73
4827 5034 6.602803 TGTGCAATTCAGGCTAAATCTGATTA 59.397 34.615 2.85 0.00 40.46 1.75
4828 5035 5.419788 TGTGCAATTCAGGCTAAATCTGATT 59.580 36.000 0.00 0.00 40.46 2.57
4829 5036 4.951715 TGTGCAATTCAGGCTAAATCTGAT 59.048 37.500 0.00 0.00 40.46 2.90
4830 5037 4.334552 TGTGCAATTCAGGCTAAATCTGA 58.665 39.130 0.00 0.00 39.24 3.27
4831 5038 4.707030 TGTGCAATTCAGGCTAAATCTG 57.293 40.909 0.00 0.00 0.00 2.90
4832 5039 5.655532 AGATTGTGCAATTCAGGCTAAATCT 59.344 36.000 0.00 0.00 38.31 2.40
4833 5040 5.899299 AGATTGTGCAATTCAGGCTAAATC 58.101 37.500 0.00 0.00 35.70 2.17
4834 5041 5.927281 AGATTGTGCAATTCAGGCTAAAT 57.073 34.783 0.00 0.00 0.00 1.40
4835 5042 5.726980 AAGATTGTGCAATTCAGGCTAAA 57.273 34.783 0.00 0.00 0.00 1.85
4836 5043 5.472148 CAAAGATTGTGCAATTCAGGCTAA 58.528 37.500 0.00 0.00 0.00 3.09
4837 5044 4.618927 GCAAAGATTGTGCAATTCAGGCTA 60.619 41.667 0.00 0.00 41.80 3.93
4838 5045 3.863400 GCAAAGATTGTGCAATTCAGGCT 60.863 43.478 0.00 0.00 41.80 4.58
4839 5046 2.414138 GCAAAGATTGTGCAATTCAGGC 59.586 45.455 0.00 0.00 41.80 4.85
4840 5047 2.997986 GGCAAAGATTGTGCAATTCAGG 59.002 45.455 0.00 0.00 44.07 3.86
4841 5048 2.664568 CGGCAAAGATTGTGCAATTCAG 59.335 45.455 0.00 0.00 44.07 3.02
4842 5049 2.035704 ACGGCAAAGATTGTGCAATTCA 59.964 40.909 0.00 0.00 44.07 2.57
4843 5050 2.676076 ACGGCAAAGATTGTGCAATTC 58.324 42.857 0.00 0.00 44.07 2.17
4844 5051 2.818130 ACGGCAAAGATTGTGCAATT 57.182 40.000 0.00 0.00 44.07 2.32
4845 5052 3.696051 AGATACGGCAAAGATTGTGCAAT 59.304 39.130 0.00 0.00 44.07 3.56
4846 5053 3.081061 AGATACGGCAAAGATTGTGCAA 58.919 40.909 0.00 0.00 44.07 4.08
4847 5054 2.710377 AGATACGGCAAAGATTGTGCA 58.290 42.857 0.00 0.00 44.07 4.57
4848 5055 3.764885 AAGATACGGCAAAGATTGTGC 57.235 42.857 0.00 0.00 41.45 4.57
4849 5056 5.812642 AGAGTAAGATACGGCAAAGATTGTG 59.187 40.000 0.00 0.00 0.00 3.33
4850 5057 5.978814 AGAGTAAGATACGGCAAAGATTGT 58.021 37.500 0.00 0.00 0.00 2.71
4851 5058 8.594881 ATTAGAGTAAGATACGGCAAAGATTG 57.405 34.615 0.00 0.00 0.00 2.67
4852 5059 9.614792 AAATTAGAGTAAGATACGGCAAAGATT 57.385 29.630 0.00 0.00 0.00 2.40
4853 5060 9.262358 GAAATTAGAGTAAGATACGGCAAAGAT 57.738 33.333 0.00 0.00 0.00 2.40
4854 5061 7.434307 CGAAATTAGAGTAAGATACGGCAAAGA 59.566 37.037 0.00 0.00 0.00 2.52
4855 5062 7.306632 CCGAAATTAGAGTAAGATACGGCAAAG 60.307 40.741 0.00 0.00 0.00 2.77
4856 5063 6.477688 CCGAAATTAGAGTAAGATACGGCAAA 59.522 38.462 0.00 0.00 0.00 3.68
4857 5064 5.981315 CCGAAATTAGAGTAAGATACGGCAA 59.019 40.000 0.00 0.00 0.00 4.52
4858 5065 5.068198 ACCGAAATTAGAGTAAGATACGGCA 59.932 40.000 0.00 0.00 40.17 5.69
4859 5066 5.527033 ACCGAAATTAGAGTAAGATACGGC 58.473 41.667 0.00 0.00 40.17 5.68
4860 5067 6.732154 TGACCGAAATTAGAGTAAGATACGG 58.268 40.000 0.00 0.00 41.85 4.02
4861 5068 7.416022 ACTGACCGAAATTAGAGTAAGATACG 58.584 38.462 0.00 0.00 0.00 3.06
4942 5153 6.262273 ACACAGTTTCCATAAGGTTTACAGTG 59.738 38.462 0.00 0.00 35.91 3.66
4962 5173 6.083098 TCATTTCCCAAACATGTTACACAG 57.917 37.500 12.39 0.00 0.00 3.66
4988 5199 6.650807 ACTGTGTCATGACATCTAAACGATTT 59.349 34.615 30.10 3.59 43.97 2.17
4997 5208 3.990469 GTCGAAACTGTGTCATGACATCT 59.010 43.478 30.10 13.50 43.97 2.90
4998 5209 3.123621 GGTCGAAACTGTGTCATGACATC 59.876 47.826 30.10 21.17 43.97 3.06
5002 5213 2.900716 TGGTCGAAACTGTGTCATGA 57.099 45.000 0.00 0.00 0.00 3.07
5073 5284 5.938125 TCAGTTACTGGTGATTTTTCTAGGC 59.062 40.000 12.79 0.00 31.51 3.93
5147 5358 5.571285 AGATCAGTAGTACTGTGTCTTGGA 58.429 41.667 25.83 8.12 46.03 3.53
5148 5359 5.447954 CGAGATCAGTAGTACTGTGTCTTGG 60.448 48.000 27.15 21.65 46.03 3.61
5149 5360 5.351740 TCGAGATCAGTAGTACTGTGTCTTG 59.648 44.000 27.95 27.95 46.03 3.02
5150 5361 5.489249 TCGAGATCAGTAGTACTGTGTCTT 58.511 41.667 26.66 17.50 46.03 3.01
5151 5362 5.087391 TCGAGATCAGTAGTACTGTGTCT 57.913 43.478 26.45 26.45 46.03 3.41
5152 5363 5.994887 ATCGAGATCAGTAGTACTGTGTC 57.005 43.478 25.83 22.98 46.03 3.67
5366 5578 2.103153 AGAGGACTGAACTGGAACCA 57.897 50.000 0.00 0.00 0.00 3.67
5387 5603 3.126858 CGTAGAGGATGCAGATCTAGCTC 59.873 52.174 15.20 10.91 0.00 4.09
5424 5640 4.609995 GGACGCTTTCCGGATGAA 57.390 55.556 4.15 0.00 42.52 2.57
5532 5748 3.485463 TCTTGGAGTGACGGTTTTCAT 57.515 42.857 0.00 0.00 0.00 2.57
5533 5749 2.940410 GTTCTTGGAGTGACGGTTTTCA 59.060 45.455 0.00 0.00 0.00 2.69
5557 5773 3.152341 CAAACCCAGATGCTTTGACTCT 58.848 45.455 0.00 0.00 0.00 3.24
5591 5807 1.789464 CGCGCATTCCATCTCTAGTTC 59.211 52.381 8.75 0.00 0.00 3.01
5603 5819 5.263185 ACAAAGTATAAATCACGCGCATTC 58.737 37.500 5.73 0.00 0.00 2.67
5630 5846 4.895854 GCCATTGCTGCGACAAAT 57.104 50.000 0.00 0.00 32.27 2.32
5640 5856 3.303406 GCTTATTGATCGAAGCCATTGC 58.697 45.455 13.23 0.00 41.85 3.56
5682 5899 4.017126 GCTCCCCTGTTTAGCAATTTACT 58.983 43.478 0.00 0.00 36.26 2.24
5706 5923 1.065701 CTCTGCAATCCAAGCTCATGC 59.934 52.381 0.00 0.00 40.05 4.06
5752 5969 0.937304 ATAGGCACGTATTTGCAGCG 59.063 50.000 0.00 0.00 44.94 5.18
5765 5982 0.544697 GAAACTCCCCGGAATAGGCA 59.455 55.000 0.73 0.00 0.00 4.75
5774 5991 0.322187 ACAATTCCCGAAACTCCCCG 60.322 55.000 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.