Multiple sequence alignment - TraesCS7D01G476700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G476700 chr7D 100.000 2626 0 0 1 2626 588041794 588039169 0.000000e+00 4850
1 TraesCS7D01G476700 chr7D 95.716 887 25 5 1 876 522374015 522374899 0.000000e+00 1415
2 TraesCS7D01G476700 chr7D 95.687 881 27 7 1 875 386391661 386390786 0.000000e+00 1406
3 TraesCS7D01G476700 chr7D 95.588 884 28 6 1 878 484934631 484935509 0.000000e+00 1406
4 TraesCS7D01G476700 chr7D 95.325 877 25 10 1 874 473866707 473867570 0.000000e+00 1378
5 TraesCS7D01G476700 chr7D 83.537 164 18 7 2391 2547 410094955 410095116 7.570000e-31 145
6 TraesCS7D01G476700 chr2D 96.485 882 26 4 1 878 250476707 250475827 0.000000e+00 1452
7 TraesCS7D01G476700 chr2D 95.701 884 27 9 1 878 624334118 624333240 0.000000e+00 1411
8 TraesCS7D01G476700 chr2D 89.941 338 27 7 2229 2561 446966264 446966599 1.870000e-116 429
9 TraesCS7D01G476700 chr4D 95.805 882 29 7 1 878 418377812 418378689 0.000000e+00 1417
10 TraesCS7D01G476700 chr4D 84.733 131 14 5 2422 2547 35382054 35382183 2.740000e-25 126
11 TraesCS7D01G476700 chr6D 95.449 879 31 7 1 875 16833800 16832927 0.000000e+00 1393
12 TraesCS7D01G476700 chr6D 82.927 164 17 8 2394 2547 100537255 100537093 1.270000e-28 137
13 TraesCS7D01G476700 chr6D 81.646 158 19 8 2394 2547 28335181 28335030 3.550000e-24 122
14 TraesCS7D01G476700 chr3D 94.921 886 31 9 1 876 587763957 587764838 0.000000e+00 1375
15 TraesCS7D01G476700 chr7B 88.049 979 58 35 986 1912 660342472 660341501 0.000000e+00 1105
16 TraesCS7D01G476700 chr7B 87.662 308 23 8 1928 2232 660341258 660340963 6.960000e-91 344
17 TraesCS7D01G476700 chr7A 89.848 788 33 23 986 1736 679900082 679899305 0.000000e+00 968
18 TraesCS7D01G476700 chr7A 88.771 472 36 9 1755 2223 679899250 679898793 1.760000e-156 562
19 TraesCS7D01G476700 chr7A 100.000 57 0 0 2570 2626 679898790 679898734 3.570000e-19 106
20 TraesCS7D01G476700 chr7A 82.443 131 9 3 874 993 679901090 679900963 4.620000e-18 102
21 TraesCS7D01G476700 chr6B 85.417 336 30 19 2233 2561 522533101 522532778 5.420000e-87 331
22 TraesCS7D01G476700 chr5D 82.209 163 20 7 2391 2547 480502459 480502618 5.900000e-27 132
23 TraesCS7D01G476700 chr5B 93.506 77 2 3 2489 2565 700776092 700776019 7.680000e-21 111
24 TraesCS7D01G476700 chr4B 93.506 77 2 3 2489 2565 123846885 123846958 7.680000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G476700 chr7D 588039169 588041794 2625 True 4850.0 4850 100.0000 1 2626 1 chr7D.!!$R2 2625
1 TraesCS7D01G476700 chr7D 522374015 522374899 884 False 1415.0 1415 95.7160 1 876 1 chr7D.!!$F4 875
2 TraesCS7D01G476700 chr7D 386390786 386391661 875 True 1406.0 1406 95.6870 1 875 1 chr7D.!!$R1 874
3 TraesCS7D01G476700 chr7D 484934631 484935509 878 False 1406.0 1406 95.5880 1 878 1 chr7D.!!$F3 877
4 TraesCS7D01G476700 chr7D 473866707 473867570 863 False 1378.0 1378 95.3250 1 874 1 chr7D.!!$F2 873
5 TraesCS7D01G476700 chr2D 250475827 250476707 880 True 1452.0 1452 96.4850 1 878 1 chr2D.!!$R1 877
6 TraesCS7D01G476700 chr2D 624333240 624334118 878 True 1411.0 1411 95.7010 1 878 1 chr2D.!!$R2 877
7 TraesCS7D01G476700 chr4D 418377812 418378689 877 False 1417.0 1417 95.8050 1 878 1 chr4D.!!$F2 877
8 TraesCS7D01G476700 chr6D 16832927 16833800 873 True 1393.0 1393 95.4490 1 875 1 chr6D.!!$R1 874
9 TraesCS7D01G476700 chr3D 587763957 587764838 881 False 1375.0 1375 94.9210 1 876 1 chr3D.!!$F1 875
10 TraesCS7D01G476700 chr7B 660340963 660342472 1509 True 724.5 1105 87.8555 986 2232 2 chr7B.!!$R1 1246
11 TraesCS7D01G476700 chr7A 679898734 679901090 2356 True 434.5 968 90.2655 874 2626 4 chr7A.!!$R1 1752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 258 0.753479 GTGGAGATGAGGAGAGGCGA 60.753 60.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 2863 0.042581 ATTCAATTTCCCCGCCCCTT 59.957 50.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
254 258 0.753479 GTGGAGATGAGGAGAGGCGA 60.753 60.000 0.00 0.00 0.00 5.54
485 519 3.236816 CAAGGACACAACAATTGATCGC 58.763 45.455 13.59 0.00 0.00 4.58
828 862 2.786777 TGCTATGCATCACCATGATCC 58.213 47.619 0.19 0.00 34.28 3.36
892 928 1.004679 GTGGGTTCTCGCCGGTTAA 60.005 57.895 1.90 0.00 0.00 2.01
899 935 3.485633 GTTCTCGCCGGTTAATTTTGAC 58.514 45.455 1.90 0.00 0.00 3.18
901 937 3.340034 TCTCGCCGGTTAATTTTGACAT 58.660 40.909 1.90 0.00 0.00 3.06
928 975 6.326323 ACATGGGATATTTGGGGTCAATTTAC 59.674 38.462 0.00 0.00 32.28 2.01
1114 2069 2.736826 CGGCCTCTCCCTTCCTTCC 61.737 68.421 0.00 0.00 0.00 3.46
1115 2070 1.307430 GGCCTCTCCCTTCCTTCCT 60.307 63.158 0.00 0.00 0.00 3.36
1116 2071 0.916845 GGCCTCTCCCTTCCTTCCTT 60.917 60.000 0.00 0.00 0.00 3.36
1117 2072 0.544223 GCCTCTCCCTTCCTTCCTTC 59.456 60.000 0.00 0.00 0.00 3.46
1128 2083 0.890996 CCTTCCTTCCTTGCGCTTGT 60.891 55.000 9.73 0.00 0.00 3.16
1160 2115 3.336138 GAAACCATCGGAGGACTTTCT 57.664 47.619 0.93 0.00 0.00 2.52
1161 2116 2.770164 AACCATCGGAGGACTTTCTG 57.230 50.000 0.93 0.00 0.00 3.02
1163 2118 0.462759 CCATCGGAGGACTTTCTGCC 60.463 60.000 0.00 0.00 0.00 4.85
1550 2511 2.673368 CTGACTGCTTCCGTTGGTTATC 59.327 50.000 0.00 0.00 0.00 1.75
1551 2512 2.037902 TGACTGCTTCCGTTGGTTATCA 59.962 45.455 0.00 0.00 0.00 2.15
1587 2548 1.800315 CGTGTAGTTCGTGCCGAGG 60.800 63.158 0.00 0.00 37.14 4.63
1591 2552 0.320160 GTAGTTCGTGCCGAGGGTTT 60.320 55.000 0.00 0.00 37.14 3.27
1593 2554 2.031465 TTCGTGCCGAGGGTTTCC 59.969 61.111 0.00 0.00 37.14 3.13
1596 2557 2.281276 GTGCCGAGGGTTTCCGTT 60.281 61.111 0.00 0.00 38.33 4.44
1597 2558 2.281208 TGCCGAGGGTTTCCGTTG 60.281 61.111 0.00 0.00 38.33 4.10
1598 2559 2.031465 GCCGAGGGTTTCCGTTGA 59.969 61.111 0.00 0.00 38.33 3.18
1620 2597 7.649533 TGATCTGCTGTATGATTTTGGATTT 57.350 32.000 0.00 0.00 0.00 2.17
1656 2633 6.006759 ACTGTGCTGAGATTTTAGCTTTTC 57.993 37.500 0.00 0.00 40.52 2.29
1663 2640 6.750963 GCTGAGATTTTAGCTTTTCATGAAGG 59.249 38.462 8.41 7.13 36.99 3.46
1732 2716 2.291217 TGCTTGGTACCATGCCAATACA 60.291 45.455 36.52 21.73 44.06 2.29
1733 2717 2.958355 GCTTGGTACCATGCCAATACAT 59.042 45.455 32.57 0.00 44.06 2.29
1734 2718 4.141287 GCTTGGTACCATGCCAATACATA 58.859 43.478 32.57 7.78 44.06 2.29
1740 2730 6.100569 TGGTACCATGCCAATACATACTACTT 59.899 38.462 11.60 0.00 32.29 2.24
1765 2784 9.793259 TTTCTTCAGTTACAAAGAAGTATGGAT 57.207 29.630 11.01 0.00 41.22 3.41
1786 2806 8.698973 TGGATATTTTGTTTCCTGAAAGTGTA 57.301 30.769 0.00 0.00 0.00 2.90
1794 2814 4.537135 TTCCTGAAAGTGTAGTGCTAGG 57.463 45.455 0.00 0.00 0.00 3.02
1796 2816 2.234908 CCTGAAAGTGTAGTGCTAGGCT 59.765 50.000 0.00 0.00 0.00 4.58
1809 2829 1.803252 GCTAGGCTTAACCGACTGCTC 60.803 57.143 0.00 0.00 46.52 4.26
1821 2841 1.202568 CGACTGCTCATCTATGCCCAA 60.203 52.381 0.00 0.00 0.00 4.12
1841 2861 4.449068 CCAATATTTTGATCGGTCGAGGAG 59.551 45.833 0.00 0.00 34.60 3.69
1842 2862 2.604046 ATTTTGATCGGTCGAGGAGG 57.396 50.000 0.00 0.00 0.00 4.30
1843 2863 1.552578 TTTTGATCGGTCGAGGAGGA 58.447 50.000 0.00 0.00 0.00 3.71
1847 2867 1.455959 ATCGGTCGAGGAGGAAGGG 60.456 63.158 0.00 0.00 0.00 3.95
1849 2869 3.471806 GGTCGAGGAGGAAGGGGC 61.472 72.222 0.00 0.00 0.00 5.80
1874 2894 4.637091 GGGAAATTGAATGCTTGGGATTTG 59.363 41.667 0.00 0.00 0.00 2.32
1921 2941 6.049149 CCAATTCCTCGCTTTAGTAGATTCA 58.951 40.000 0.00 0.00 0.00 2.57
1980 3228 0.879765 CTGCAAAGCTGGAACTCTGG 59.120 55.000 0.00 0.00 0.00 3.86
2006 3254 0.763035 GTGGTAGGTTGGTGGTGAGT 59.237 55.000 0.00 0.00 0.00 3.41
2020 3268 1.158466 TGAGTCCCAGAGGCTTCCA 59.842 57.895 0.00 0.00 0.00 3.53
2127 3375 8.560124 TTTAAATTGTTATTATCCCCTGGCAT 57.440 30.769 0.00 0.00 0.00 4.40
2150 3398 9.982651 GCATATCCTGTAGAATTAGAACAACTA 57.017 33.333 0.00 0.00 0.00 2.24
2223 3472 9.030452 ACTTAGATTCTAGTCACATCTCAACTT 57.970 33.333 0.00 0.00 0.00 2.66
2226 3475 8.815565 AGATTCTAGTCACATCTCAACTTAGA 57.184 34.615 0.00 0.00 0.00 2.10
2227 3476 9.420118 AGATTCTAGTCACATCTCAACTTAGAT 57.580 33.333 0.00 0.00 36.64 1.98
2230 3479 8.001881 TCTAGTCACATCTCAACTTAGATTCC 57.998 38.462 0.00 0.00 33.87 3.01
2231 3480 6.865834 AGTCACATCTCAACTTAGATTCCT 57.134 37.500 0.00 0.00 33.87 3.36
2232 3481 6.872920 AGTCACATCTCAACTTAGATTCCTC 58.127 40.000 0.00 0.00 33.87 3.71
2233 3482 6.045955 GTCACATCTCAACTTAGATTCCTCC 58.954 44.000 0.00 0.00 33.87 4.30
2234 3483 5.960811 TCACATCTCAACTTAGATTCCTCCT 59.039 40.000 0.00 0.00 33.87 3.69
2235 3484 6.097554 TCACATCTCAACTTAGATTCCTCCTC 59.902 42.308 0.00 0.00 33.87 3.71
2236 3485 5.365314 ACATCTCAACTTAGATTCCTCCTCC 59.635 44.000 0.00 0.00 33.87 4.30
2237 3486 4.947883 TCTCAACTTAGATTCCTCCTCCA 58.052 43.478 0.00 0.00 0.00 3.86
2238 3487 4.959210 TCTCAACTTAGATTCCTCCTCCAG 59.041 45.833 0.00 0.00 0.00 3.86
2239 3488 4.689062 TCAACTTAGATTCCTCCTCCAGT 58.311 43.478 0.00 0.00 0.00 4.00
2240 3489 4.712337 TCAACTTAGATTCCTCCTCCAGTC 59.288 45.833 0.00 0.00 0.00 3.51
2241 3490 4.618378 ACTTAGATTCCTCCTCCAGTCT 57.382 45.455 0.00 0.00 0.00 3.24
2242 3491 4.954089 ACTTAGATTCCTCCTCCAGTCTT 58.046 43.478 0.00 0.00 0.00 3.01
2243 3492 5.346270 ACTTAGATTCCTCCTCCAGTCTTT 58.654 41.667 0.00 0.00 0.00 2.52
2244 3493 5.788014 ACTTAGATTCCTCCTCCAGTCTTTT 59.212 40.000 0.00 0.00 0.00 2.27
2245 3494 4.566426 AGATTCCTCCTCCAGTCTTTTG 57.434 45.455 0.00 0.00 0.00 2.44
2246 3495 3.913163 AGATTCCTCCTCCAGTCTTTTGT 59.087 43.478 0.00 0.00 0.00 2.83
2247 3496 3.771577 TTCCTCCTCCAGTCTTTTGTC 57.228 47.619 0.00 0.00 0.00 3.18
2248 3497 2.977808 TCCTCCTCCAGTCTTTTGTCT 58.022 47.619 0.00 0.00 0.00 3.41
2249 3498 2.900546 TCCTCCTCCAGTCTTTTGTCTC 59.099 50.000 0.00 0.00 0.00 3.36
2250 3499 2.903135 CCTCCTCCAGTCTTTTGTCTCT 59.097 50.000 0.00 0.00 0.00 3.10
2251 3500 3.306641 CCTCCTCCAGTCTTTTGTCTCTG 60.307 52.174 0.00 0.00 0.00 3.35
2252 3501 2.634940 TCCTCCAGTCTTTTGTCTCTGG 59.365 50.000 0.00 0.00 46.00 3.86
2253 3502 2.289945 CCTCCAGTCTTTTGTCTCTGGG 60.290 54.545 9.66 2.16 45.07 4.45
2254 3503 2.634940 CTCCAGTCTTTTGTCTCTGGGA 59.365 50.000 9.66 0.00 45.07 4.37
2255 3504 3.045634 TCCAGTCTTTTGTCTCTGGGAA 58.954 45.455 9.66 0.00 45.07 3.97
2256 3505 3.071602 TCCAGTCTTTTGTCTCTGGGAAG 59.928 47.826 9.66 0.00 45.07 3.46
2257 3506 3.071602 CCAGTCTTTTGTCTCTGGGAAGA 59.928 47.826 0.00 0.00 42.38 2.87
2258 3507 4.444876 CCAGTCTTTTGTCTCTGGGAAGAA 60.445 45.833 0.00 0.00 42.38 2.52
2259 3508 5.312079 CAGTCTTTTGTCTCTGGGAAGAAT 58.688 41.667 0.00 0.00 0.00 2.40
2260 3509 6.467677 CAGTCTTTTGTCTCTGGGAAGAATA 58.532 40.000 0.00 0.00 0.00 1.75
2261 3510 6.936900 CAGTCTTTTGTCTCTGGGAAGAATAA 59.063 38.462 0.00 0.00 0.00 1.40
2262 3511 7.445402 CAGTCTTTTGTCTCTGGGAAGAATAAA 59.555 37.037 0.00 0.00 0.00 1.40
2263 3512 7.998964 AGTCTTTTGTCTCTGGGAAGAATAAAA 59.001 33.333 0.00 0.00 0.00 1.52
2264 3513 8.630037 GTCTTTTGTCTCTGGGAAGAATAAAAA 58.370 33.333 0.00 0.00 30.11 1.94
2265 3514 9.367160 TCTTTTGTCTCTGGGAAGAATAAAAAT 57.633 29.630 0.00 0.00 30.11 1.82
2266 3515 9.415544 CTTTTGTCTCTGGGAAGAATAAAAATG 57.584 33.333 0.00 0.00 30.11 2.32
2267 3516 8.477419 TTTGTCTCTGGGAAGAATAAAAATGT 57.523 30.769 0.00 0.00 0.00 2.71
2268 3517 9.581289 TTTGTCTCTGGGAAGAATAAAAATGTA 57.419 29.630 0.00 0.00 0.00 2.29
2269 3518 9.753674 TTGTCTCTGGGAAGAATAAAAATGTAT 57.246 29.630 0.00 0.00 0.00 2.29
2270 3519 9.177608 TGTCTCTGGGAAGAATAAAAATGTATG 57.822 33.333 0.00 0.00 0.00 2.39
2271 3520 9.396022 GTCTCTGGGAAGAATAAAAATGTATGA 57.604 33.333 0.00 0.00 0.00 2.15
2274 3523 9.699410 TCTGGGAAGAATAAAAATGTATGATGT 57.301 29.630 0.00 0.00 0.00 3.06
2290 3539 9.770097 ATGTATGATGTTTGATACCTGTTAGAG 57.230 33.333 0.00 0.00 0.00 2.43
2292 3541 6.867519 TGATGTTTGATACCTGTTAGAGGA 57.132 37.500 1.26 0.00 46.33 3.71
2293 3542 6.878317 TGATGTTTGATACCTGTTAGAGGAG 58.122 40.000 1.26 0.00 46.33 3.69
2294 3543 5.086104 TGTTTGATACCTGTTAGAGGAGC 57.914 43.478 1.26 0.00 46.33 4.70
2295 3544 4.530553 TGTTTGATACCTGTTAGAGGAGCA 59.469 41.667 1.26 0.00 46.33 4.26
2296 3545 5.112686 GTTTGATACCTGTTAGAGGAGCAG 58.887 45.833 1.26 0.00 46.33 4.24
2297 3546 3.982516 TGATACCTGTTAGAGGAGCAGT 58.017 45.455 1.26 0.00 46.33 4.40
2298 3547 4.353777 TGATACCTGTTAGAGGAGCAGTT 58.646 43.478 1.26 0.00 46.33 3.16
2299 3548 4.777896 TGATACCTGTTAGAGGAGCAGTTT 59.222 41.667 1.26 0.00 46.33 2.66
2300 3549 3.409026 ACCTGTTAGAGGAGCAGTTTG 57.591 47.619 1.26 0.00 46.33 2.93
2301 3550 2.706190 ACCTGTTAGAGGAGCAGTTTGT 59.294 45.455 1.26 0.00 46.33 2.83
2302 3551 3.901844 ACCTGTTAGAGGAGCAGTTTGTA 59.098 43.478 1.26 0.00 46.33 2.41
2303 3552 4.532521 ACCTGTTAGAGGAGCAGTTTGTAT 59.467 41.667 1.26 0.00 46.33 2.29
2304 3553 4.872691 CCTGTTAGAGGAGCAGTTTGTATG 59.127 45.833 0.00 0.00 46.33 2.39
2305 3554 4.253685 TGTTAGAGGAGCAGTTTGTATGC 58.746 43.478 0.00 0.00 44.18 3.14
2306 3555 2.409948 AGAGGAGCAGTTTGTATGCC 57.590 50.000 0.00 0.00 44.97 4.40
2307 3556 1.630369 AGAGGAGCAGTTTGTATGCCA 59.370 47.619 0.00 0.00 44.97 4.92
2308 3557 1.740025 GAGGAGCAGTTTGTATGCCAC 59.260 52.381 0.00 0.00 44.97 5.01
2309 3558 0.811281 GGAGCAGTTTGTATGCCACC 59.189 55.000 0.00 0.00 44.97 4.61
2310 3559 1.614317 GGAGCAGTTTGTATGCCACCT 60.614 52.381 0.00 0.00 44.97 4.00
2311 3560 2.162681 GAGCAGTTTGTATGCCACCTT 58.837 47.619 0.00 0.00 44.97 3.50
2312 3561 2.558359 GAGCAGTTTGTATGCCACCTTT 59.442 45.455 0.00 0.00 44.97 3.11
2313 3562 2.297033 AGCAGTTTGTATGCCACCTTTG 59.703 45.455 0.00 0.00 44.97 2.77
2314 3563 4.872552 AGCAGTTTGTATGCCACCTTTGG 61.873 47.826 0.00 0.00 44.97 3.28
2329 3578 5.659463 CACCTTTGGATGTTTCTGTTTTCA 58.341 37.500 0.00 0.00 0.00 2.69
2330 3579 6.105333 CACCTTTGGATGTTTCTGTTTTCAA 58.895 36.000 0.00 0.00 0.00 2.69
2331 3580 6.593382 CACCTTTGGATGTTTCTGTTTTCAAA 59.407 34.615 0.00 0.00 0.00 2.69
2332 3581 6.593770 ACCTTTGGATGTTTCTGTTTTCAAAC 59.406 34.615 0.00 0.00 39.33 2.93
2333 3582 6.818142 CCTTTGGATGTTTCTGTTTTCAAACT 59.182 34.615 4.14 0.00 39.59 2.66
2334 3583 7.010460 CCTTTGGATGTTTCTGTTTTCAAACTC 59.990 37.037 4.14 0.00 39.59 3.01
2335 3584 6.773976 TGGATGTTTCTGTTTTCAAACTCT 57.226 33.333 4.14 0.00 39.59 3.24
2336 3585 6.563422 TGGATGTTTCTGTTTTCAAACTCTG 58.437 36.000 4.14 0.00 39.59 3.35
2337 3586 6.152661 TGGATGTTTCTGTTTTCAAACTCTGT 59.847 34.615 4.14 0.00 39.59 3.41
2338 3587 7.035612 GGATGTTTCTGTTTTCAAACTCTGTT 58.964 34.615 4.14 0.00 39.59 3.16
2339 3588 7.009540 GGATGTTTCTGTTTTCAAACTCTGTTG 59.990 37.037 4.14 0.00 39.59 3.33
2340 3589 6.744112 TGTTTCTGTTTTCAAACTCTGTTGT 58.256 32.000 4.14 0.00 39.59 3.32
2341 3590 7.877003 TGTTTCTGTTTTCAAACTCTGTTGTA 58.123 30.769 4.14 0.00 39.59 2.41
2342 3591 8.353684 TGTTTCTGTTTTCAAACTCTGTTGTAA 58.646 29.630 4.14 0.00 39.59 2.41
2343 3592 9.353999 GTTTCTGTTTTCAAACTCTGTTGTAAT 57.646 29.630 4.14 0.00 39.59 1.89
2344 3593 9.567848 TTTCTGTTTTCAAACTCTGTTGTAATC 57.432 29.630 4.14 0.00 39.59 1.75
2345 3594 8.506168 TCTGTTTTCAAACTCTGTTGTAATCT 57.494 30.769 4.14 0.00 39.59 2.40
2346 3595 8.397906 TCTGTTTTCAAACTCTGTTGTAATCTG 58.602 33.333 4.14 0.00 39.59 2.90
2347 3596 7.479980 TGTTTTCAAACTCTGTTGTAATCTGG 58.520 34.615 4.14 0.00 39.59 3.86
2348 3597 7.122055 TGTTTTCAAACTCTGTTGTAATCTGGT 59.878 33.333 4.14 0.00 39.59 4.00
2349 3598 6.618287 TTCAAACTCTGTTGTAATCTGGTG 57.382 37.500 0.00 0.00 0.00 4.17
2350 3599 4.515191 TCAAACTCTGTTGTAATCTGGTGC 59.485 41.667 0.00 0.00 0.00 5.01
2351 3600 4.357918 AACTCTGTTGTAATCTGGTGCT 57.642 40.909 0.00 0.00 0.00 4.40
2352 3601 3.668447 ACTCTGTTGTAATCTGGTGCTG 58.332 45.455 0.00 0.00 0.00 4.41
2353 3602 3.005554 CTCTGTTGTAATCTGGTGCTGG 58.994 50.000 0.00 0.00 0.00 4.85
2354 3603 2.086869 CTGTTGTAATCTGGTGCTGGG 58.913 52.381 0.00 0.00 0.00 4.45
2355 3604 1.702401 TGTTGTAATCTGGTGCTGGGA 59.298 47.619 0.00 0.00 0.00 4.37
2356 3605 2.084546 GTTGTAATCTGGTGCTGGGAC 58.915 52.381 0.00 0.00 0.00 4.46
2357 3606 0.618458 TGTAATCTGGTGCTGGGACC 59.382 55.000 4.29 4.29 36.43 4.46
2358 3607 0.912486 GTAATCTGGTGCTGGGACCT 59.088 55.000 12.21 0.00 36.88 3.85
2359 3608 0.911769 TAATCTGGTGCTGGGACCTG 59.088 55.000 12.21 11.49 36.88 4.00
2360 3609 2.490270 AATCTGGTGCTGGGACCTGC 62.490 60.000 12.65 12.65 40.57 4.85
2361 3610 3.644606 CTGGTGCTGGGACCTGCT 61.645 66.667 18.94 0.00 40.75 4.24
2362 3611 3.177884 TGGTGCTGGGACCTGCTT 61.178 61.111 18.94 0.00 40.75 3.91
2363 3612 2.116125 GGTGCTGGGACCTGCTTT 59.884 61.111 18.94 0.00 40.75 3.51
2364 3613 2.270986 GGTGCTGGGACCTGCTTTG 61.271 63.158 18.94 0.00 40.75 2.77
2365 3614 1.228245 GTGCTGGGACCTGCTTTGA 60.228 57.895 18.94 0.00 40.75 2.69
2366 3615 1.073722 TGCTGGGACCTGCTTTGAG 59.926 57.895 18.94 0.00 40.75 3.02
2367 3616 2.338785 GCTGGGACCTGCTTTGAGC 61.339 63.158 12.32 0.00 42.82 4.26
2368 3617 1.676967 CTGGGACCTGCTTTGAGCC 60.677 63.158 0.00 0.00 41.51 4.70
2369 3618 2.361737 GGGACCTGCTTTGAGCCC 60.362 66.667 0.00 0.00 41.51 5.19
2370 3619 2.436109 GGACCTGCTTTGAGCCCA 59.564 61.111 0.00 0.00 41.51 5.36
2371 3620 1.676967 GGACCTGCTTTGAGCCCAG 60.677 63.158 0.00 0.00 41.51 4.45
2373 3622 3.066814 CCTGCTTTGAGCCCAGGC 61.067 66.667 0.00 0.00 41.51 4.85
2374 3623 3.066814 CTGCTTTGAGCCCAGGCC 61.067 66.667 4.70 0.00 41.51 5.19
2375 3624 3.580604 CTGCTTTGAGCCCAGGCCT 62.581 63.158 0.00 0.00 41.51 5.19
2376 3625 2.283460 GCTTTGAGCCCAGGCCTT 60.283 61.111 0.00 0.00 43.17 4.35
2377 3626 1.000896 GCTTTGAGCCCAGGCCTTA 60.001 57.895 0.00 0.00 43.17 2.69
2378 3627 1.034292 GCTTTGAGCCCAGGCCTTAG 61.034 60.000 0.00 0.00 43.17 2.18
2379 3628 0.620556 CTTTGAGCCCAGGCCTTAGA 59.379 55.000 0.00 0.00 43.17 2.10
2380 3629 1.213926 CTTTGAGCCCAGGCCTTAGAT 59.786 52.381 0.00 0.00 43.17 1.98
2381 3630 0.839946 TTGAGCCCAGGCCTTAGATC 59.160 55.000 0.00 6.26 43.17 2.75
2382 3631 0.030705 TGAGCCCAGGCCTTAGATCT 60.031 55.000 15.99 0.00 43.17 2.75
2383 3632 0.684535 GAGCCCAGGCCTTAGATCTC 59.315 60.000 0.00 1.75 43.17 2.75
2384 3633 0.267356 AGCCCAGGCCTTAGATCTCT 59.733 55.000 0.00 0.00 43.17 3.10
2385 3634 1.135960 GCCCAGGCCTTAGATCTCTT 58.864 55.000 0.00 0.00 34.56 2.85
2386 3635 1.202746 GCCCAGGCCTTAGATCTCTTG 60.203 57.143 0.00 0.00 34.56 3.02
2387 3636 1.419387 CCCAGGCCTTAGATCTCTTGG 59.581 57.143 0.00 0.46 0.00 3.61
2388 3637 1.419387 CCAGGCCTTAGATCTCTTGGG 59.581 57.143 0.00 0.00 0.00 4.12
2389 3638 1.419387 CAGGCCTTAGATCTCTTGGGG 59.581 57.143 0.00 0.00 0.00 4.96
2390 3639 0.767998 GGCCTTAGATCTCTTGGGGG 59.232 60.000 0.00 0.00 0.00 5.40
2391 3640 1.512735 GCCTTAGATCTCTTGGGGGT 58.487 55.000 0.00 0.00 0.00 4.95
2392 3641 1.418264 GCCTTAGATCTCTTGGGGGTC 59.582 57.143 0.00 0.00 0.00 4.46
2393 3642 2.050918 CCTTAGATCTCTTGGGGGTCC 58.949 57.143 0.00 0.00 0.00 4.46
2394 3643 2.360854 CCTTAGATCTCTTGGGGGTCCT 60.361 54.545 0.00 0.00 0.00 3.85
2395 3644 2.478872 TAGATCTCTTGGGGGTCCTG 57.521 55.000 0.00 0.00 0.00 3.86
2396 3645 0.985490 AGATCTCTTGGGGGTCCTGC 60.985 60.000 0.00 0.00 0.00 4.85
2397 3646 0.985490 GATCTCTTGGGGGTCCTGCT 60.985 60.000 0.00 0.00 0.00 4.24
2398 3647 0.551131 ATCTCTTGGGGGTCCTGCTT 60.551 55.000 0.00 0.00 0.00 3.91
2399 3648 0.772124 TCTCTTGGGGGTCCTGCTTT 60.772 55.000 0.00 0.00 0.00 3.51
2400 3649 0.610232 CTCTTGGGGGTCCTGCTTTG 60.610 60.000 0.00 0.00 0.00 2.77
2401 3650 1.607467 CTTGGGGGTCCTGCTTTGG 60.607 63.158 0.00 0.00 0.00 3.28
2402 3651 3.159104 TTGGGGGTCCTGCTTTGGG 62.159 63.158 0.00 0.00 0.00 4.12
2403 3652 4.382541 GGGGGTCCTGCTTTGGGG 62.383 72.222 0.00 0.00 0.00 4.96
2404 3653 4.382541 GGGGTCCTGCTTTGGGGG 62.383 72.222 0.00 0.00 0.00 5.40
2406 3655 3.984732 GGTCCTGCTTTGGGGGCT 61.985 66.667 0.00 0.00 0.00 5.19
2407 3656 2.612493 GGTCCTGCTTTGGGGGCTA 61.612 63.158 0.00 0.00 0.00 3.93
2408 3657 1.382629 GTCCTGCTTTGGGGGCTAA 59.617 57.895 0.00 0.00 0.00 3.09
2409 3658 0.033109 GTCCTGCTTTGGGGGCTAAT 60.033 55.000 0.00 0.00 0.00 1.73
2410 3659 0.033208 TCCTGCTTTGGGGGCTAATG 60.033 55.000 0.00 0.00 0.00 1.90
2411 3660 1.044790 CCTGCTTTGGGGGCTAATGG 61.045 60.000 0.00 0.00 0.00 3.16
2412 3661 1.001503 TGCTTTGGGGGCTAATGGG 59.998 57.895 0.00 0.00 0.00 4.00
2413 3662 1.309688 GCTTTGGGGGCTAATGGGA 59.690 57.895 0.00 0.00 0.00 4.37
2414 3663 0.756815 GCTTTGGGGGCTAATGGGAG 60.757 60.000 0.00 0.00 0.00 4.30
2415 3664 0.106015 CTTTGGGGGCTAATGGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
2416 3665 1.589399 TTTGGGGGCTAATGGGAGGG 61.589 60.000 0.00 0.00 0.00 4.30
2417 3666 3.185941 GGGGGCTAATGGGAGGGG 61.186 72.222 0.00 0.00 0.00 4.79
2418 3667 2.038762 GGGGCTAATGGGAGGGGA 60.039 66.667 0.00 0.00 0.00 4.81
2419 3668 1.699930 GGGGCTAATGGGAGGGGAA 60.700 63.158 0.00 0.00 0.00 3.97
2420 3669 1.720077 GGGGCTAATGGGAGGGGAAG 61.720 65.000 0.00 0.00 0.00 3.46
2421 3670 1.720077 GGGCTAATGGGAGGGGAAGG 61.720 65.000 0.00 0.00 0.00 3.46
2422 3671 1.720077 GGCTAATGGGAGGGGAAGGG 61.720 65.000 0.00 0.00 0.00 3.95
2423 3672 0.697854 GCTAATGGGAGGGGAAGGGA 60.698 60.000 0.00 0.00 0.00 4.20
2424 3673 2.053251 GCTAATGGGAGGGGAAGGGAT 61.053 57.143 0.00 0.00 0.00 3.85
2425 3674 1.707427 CTAATGGGAGGGGAAGGGATG 59.293 57.143 0.00 0.00 0.00 3.51
2426 3675 1.001140 AATGGGAGGGGAAGGGATGG 61.001 60.000 0.00 0.00 0.00 3.51
2427 3676 3.502875 GGGAGGGGAAGGGATGGC 61.503 72.222 0.00 0.00 0.00 4.40
2428 3677 2.368878 GGAGGGGAAGGGATGGCT 60.369 66.667 0.00 0.00 0.00 4.75
2429 3678 2.009302 GGAGGGGAAGGGATGGCTT 61.009 63.158 0.00 0.00 0.00 4.35
2430 3679 1.534203 GAGGGGAAGGGATGGCTTC 59.466 63.158 0.00 0.00 0.00 3.86
2431 3680 2.000825 GAGGGGAAGGGATGGCTTCC 62.001 65.000 10.85 10.85 46.12 3.46
2439 3688 1.534203 GGATGGCTTCCCCTCTTCC 59.466 63.158 8.20 0.00 38.75 3.46
2440 3689 0.990818 GGATGGCTTCCCCTCTTCCT 60.991 60.000 8.20 0.00 38.75 3.36
2441 3690 0.472044 GATGGCTTCCCCTCTTCCTC 59.528 60.000 0.00 0.00 0.00 3.71
2442 3691 0.253347 ATGGCTTCCCCTCTTCCTCA 60.253 55.000 0.00 0.00 0.00 3.86
2443 3692 0.475632 TGGCTTCCCCTCTTCCTCAA 60.476 55.000 0.00 0.00 0.00 3.02
2444 3693 0.922626 GGCTTCCCCTCTTCCTCAAT 59.077 55.000 0.00 0.00 0.00 2.57
2445 3694 2.127708 GGCTTCCCCTCTTCCTCAATA 58.872 52.381 0.00 0.00 0.00 1.90
2446 3695 2.105649 GGCTTCCCCTCTTCCTCAATAG 59.894 54.545 0.00 0.00 0.00 1.73
2447 3696 2.486370 GCTTCCCCTCTTCCTCAATAGC 60.486 54.545 0.00 0.00 0.00 2.97
2448 3697 1.807814 TCCCCTCTTCCTCAATAGCC 58.192 55.000 0.00 0.00 0.00 3.93
2449 3698 1.009552 TCCCCTCTTCCTCAATAGCCA 59.990 52.381 0.00 0.00 0.00 4.75
2450 3699 1.419387 CCCCTCTTCCTCAATAGCCAG 59.581 57.143 0.00 0.00 0.00 4.85
2451 3700 2.122768 CCCTCTTCCTCAATAGCCAGT 58.877 52.381 0.00 0.00 0.00 4.00
2452 3701 2.158842 CCCTCTTCCTCAATAGCCAGTG 60.159 54.545 0.00 0.00 0.00 3.66
2453 3702 2.768527 CCTCTTCCTCAATAGCCAGTGA 59.231 50.000 0.00 0.00 0.00 3.41
2454 3703 3.390639 CCTCTTCCTCAATAGCCAGTGAT 59.609 47.826 0.00 0.00 0.00 3.06
2455 3704 4.502950 CCTCTTCCTCAATAGCCAGTGATC 60.503 50.000 0.00 0.00 0.00 2.92
2456 3705 4.293494 TCTTCCTCAATAGCCAGTGATCT 58.707 43.478 0.00 0.00 0.00 2.75
2457 3706 4.343526 TCTTCCTCAATAGCCAGTGATCTC 59.656 45.833 0.00 0.00 0.00 2.75
2458 3707 2.968574 TCCTCAATAGCCAGTGATCTCC 59.031 50.000 0.00 0.00 0.00 3.71
2459 3708 2.288702 CCTCAATAGCCAGTGATCTCCG 60.289 54.545 0.00 0.00 0.00 4.63
2460 3709 2.625314 CTCAATAGCCAGTGATCTCCGA 59.375 50.000 0.00 0.00 0.00 4.55
2461 3710 2.625314 TCAATAGCCAGTGATCTCCGAG 59.375 50.000 0.00 0.00 0.00 4.63
2462 3711 2.625314 CAATAGCCAGTGATCTCCGAGA 59.375 50.000 0.00 0.00 0.00 4.04
2463 3712 1.974265 TAGCCAGTGATCTCCGAGAG 58.026 55.000 4.07 0.00 0.00 3.20
2464 3713 0.257328 AGCCAGTGATCTCCGAGAGA 59.743 55.000 4.07 6.14 43.20 3.10
2473 3722 2.666272 TCTCCGAGAGATGCCATAGT 57.334 50.000 0.00 0.00 33.35 2.12
2474 3723 3.790089 TCTCCGAGAGATGCCATAGTA 57.210 47.619 0.00 0.00 33.35 1.82
2475 3724 3.680490 TCTCCGAGAGATGCCATAGTAG 58.320 50.000 0.00 0.00 33.35 2.57
2476 3725 2.163412 CTCCGAGAGATGCCATAGTAGC 59.837 54.545 0.00 0.00 0.00 3.58
2477 3726 2.166829 CCGAGAGATGCCATAGTAGCT 58.833 52.381 0.00 0.00 0.00 3.32
2478 3727 2.560542 CCGAGAGATGCCATAGTAGCTT 59.439 50.000 0.00 0.00 0.00 3.74
2479 3728 3.006323 CCGAGAGATGCCATAGTAGCTTT 59.994 47.826 0.00 0.00 0.00 3.51
2480 3729 4.233789 CGAGAGATGCCATAGTAGCTTTC 58.766 47.826 0.00 0.00 0.00 2.62
2481 3730 4.261783 CGAGAGATGCCATAGTAGCTTTCA 60.262 45.833 0.00 0.00 27.81 2.69
2482 3731 5.566429 CGAGAGATGCCATAGTAGCTTTCAT 60.566 44.000 0.00 0.00 27.81 2.57
2483 3732 5.549347 AGAGATGCCATAGTAGCTTTCATG 58.451 41.667 0.00 0.00 0.00 3.07
2484 3733 5.071519 AGAGATGCCATAGTAGCTTTCATGT 59.928 40.000 0.00 0.00 0.00 3.21
2485 3734 5.688807 AGATGCCATAGTAGCTTTCATGTT 58.311 37.500 0.00 0.00 0.00 2.71
2486 3735 6.125029 AGATGCCATAGTAGCTTTCATGTTT 58.875 36.000 0.00 0.00 0.00 2.83
2487 3736 5.818136 TGCCATAGTAGCTTTCATGTTTC 57.182 39.130 0.00 0.00 0.00 2.78
2488 3737 5.500234 TGCCATAGTAGCTTTCATGTTTCT 58.500 37.500 0.00 0.00 0.00 2.52
2489 3738 5.945784 TGCCATAGTAGCTTTCATGTTTCTT 59.054 36.000 0.00 0.00 0.00 2.52
2490 3739 6.434028 TGCCATAGTAGCTTTCATGTTTCTTT 59.566 34.615 0.00 0.00 0.00 2.52
2491 3740 7.039784 TGCCATAGTAGCTTTCATGTTTCTTTT 60.040 33.333 0.00 0.00 0.00 2.27
2492 3741 7.814587 GCCATAGTAGCTTTCATGTTTCTTTTT 59.185 33.333 0.00 0.00 0.00 1.94
2519 3768 5.407407 TCTGTAAGACCTGGTGATTTCTC 57.593 43.478 2.82 0.00 38.67 2.87
2520 3769 5.087323 TCTGTAAGACCTGGTGATTTCTCT 58.913 41.667 2.82 0.00 38.67 3.10
2521 3770 5.544176 TCTGTAAGACCTGGTGATTTCTCTT 59.456 40.000 2.82 1.73 38.67 2.85
2522 3771 6.724441 TCTGTAAGACCTGGTGATTTCTCTTA 59.276 38.462 2.82 0.66 38.67 2.10
2523 3772 7.234782 TCTGTAAGACCTGGTGATTTCTCTTAA 59.765 37.037 2.82 0.00 38.67 1.85
2524 3773 7.918076 TGTAAGACCTGGTGATTTCTCTTAAT 58.082 34.615 2.82 0.00 0.00 1.40
2525 3774 7.824289 TGTAAGACCTGGTGATTTCTCTTAATG 59.176 37.037 2.82 0.00 0.00 1.90
2526 3775 5.749462 AGACCTGGTGATTTCTCTTAATGG 58.251 41.667 2.82 0.00 0.00 3.16
2527 3776 5.488919 AGACCTGGTGATTTCTCTTAATGGA 59.511 40.000 2.82 0.00 0.00 3.41
2528 3777 6.012508 AGACCTGGTGATTTCTCTTAATGGAA 60.013 38.462 2.82 0.00 0.00 3.53
2529 3778 6.552008 ACCTGGTGATTTCTCTTAATGGAAA 58.448 36.000 0.00 5.76 36.17 3.13
2530 3779 7.184862 ACCTGGTGATTTCTCTTAATGGAAAT 58.815 34.615 0.00 12.55 42.53 2.17
2537 3786 8.082334 GATTTCTCTTAATGGAAATCGGAGAG 57.918 38.462 18.68 0.00 43.90 3.20
2538 3787 6.791867 TTCTCTTAATGGAAATCGGAGAGA 57.208 37.500 0.00 0.00 43.63 3.10
2539 3788 6.791867 TCTCTTAATGGAAATCGGAGAGAA 57.208 37.500 0.00 0.00 43.63 2.87
2540 3789 7.182817 TCTCTTAATGGAAATCGGAGAGAAA 57.817 36.000 0.00 0.00 43.63 2.52
2541 3790 7.268586 TCTCTTAATGGAAATCGGAGAGAAAG 58.731 38.462 0.00 0.00 43.63 2.62
2542 3791 5.817816 TCTTAATGGAAATCGGAGAGAAAGC 59.182 40.000 0.00 0.00 43.63 3.51
2543 3792 3.922171 ATGGAAATCGGAGAGAAAGCT 57.078 42.857 0.00 0.00 43.63 3.74
2544 3793 3.252974 TGGAAATCGGAGAGAAAGCTC 57.747 47.619 0.00 0.00 43.63 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
485 519 2.474526 CGCACACGGCTAAAAGATCAAG 60.475 50.000 0.00 0.00 41.67 3.02
736 770 1.727880 GTTAGCACAACGCGGTTGATA 59.272 47.619 22.26 12.60 45.28 2.15
764 798 1.468520 CGTACCCTCGTAGACCGAAAA 59.531 52.381 0.00 0.00 46.75 2.29
798 832 0.833287 ATGCATAGCAACGAGAGGGT 59.167 50.000 0.00 0.00 43.62 4.34
828 862 3.896648 AAAAATCCTACGCACACACAG 57.103 42.857 0.00 0.00 0.00 3.66
878 914 3.058777 TGTCAAAATTAACCGGCGAGAAC 60.059 43.478 9.30 0.00 0.00 3.01
879 915 3.139850 TGTCAAAATTAACCGGCGAGAA 58.860 40.909 9.30 0.00 0.00 2.87
884 920 4.167554 TGTGATGTCAAAATTAACCGGC 57.832 40.909 0.00 0.00 0.00 6.13
892 928 7.419287 CCCAAATATCCCATGTGATGTCAAAAT 60.419 37.037 0.36 0.00 0.00 1.82
899 935 3.828451 GACCCCAAATATCCCATGTGATG 59.172 47.826 0.36 0.00 0.00 3.07
901 937 2.855599 TGACCCCAAATATCCCATGTGA 59.144 45.455 0.00 0.00 0.00 3.58
998 1932 5.893500 TCACATAACCCCAACTTTATGGAA 58.106 37.500 6.35 0.00 43.54 3.53
1104 2050 0.678048 CGCAAGGAAGGAAGGAAGGG 60.678 60.000 0.00 0.00 0.00 3.95
1114 2069 2.256461 GCCACAAGCGCAAGGAAG 59.744 61.111 11.47 0.00 38.28 3.46
1163 2118 1.450312 CAAACCCTAGCTGGCTCCG 60.450 63.158 0.00 0.00 0.00 4.63
1500 2460 1.963515 ACTTCAATCGCCCAAAAAGCT 59.036 42.857 0.00 0.00 0.00 3.74
1550 2511 3.922240 CACGGCCAAATGATTTCTTTCTG 59.078 43.478 2.24 0.00 0.00 3.02
1551 2512 3.573967 ACACGGCCAAATGATTTCTTTCT 59.426 39.130 2.24 0.00 0.00 2.52
1587 2548 1.523758 ACAGCAGATCAACGGAAACC 58.476 50.000 0.00 0.00 0.00 3.27
1591 2552 4.406648 AATCATACAGCAGATCAACGGA 57.593 40.909 0.00 0.00 0.00 4.69
1593 2554 5.065090 TCCAAAATCATACAGCAGATCAACG 59.935 40.000 0.00 0.00 0.00 4.10
1596 2557 7.339976 TGAAATCCAAAATCATACAGCAGATCA 59.660 33.333 0.00 0.00 0.00 2.92
1597 2558 7.709947 TGAAATCCAAAATCATACAGCAGATC 58.290 34.615 0.00 0.00 0.00 2.75
1598 2559 7.341256 ACTGAAATCCAAAATCATACAGCAGAT 59.659 33.333 0.00 0.00 0.00 2.90
1620 2597 9.890629 AATCTCAGCACAGTTATTAATTACTGA 57.109 29.630 31.11 14.20 43.45 3.41
1639 2616 6.750963 GCCTTCATGAAAAGCTAAAATCTCAG 59.249 38.462 18.42 0.00 0.00 3.35
1663 2640 2.446435 ACTGAAACATACACCCATGGC 58.554 47.619 6.09 0.00 0.00 4.40
1760 2779 8.193953 ACACTTTCAGGAAACAAAATATCCAT 57.806 30.769 0.00 0.00 35.62 3.41
1765 2784 7.284489 AGCACTACACTTTCAGGAAACAAAATA 59.716 33.333 0.00 0.00 0.00 1.40
1786 2806 1.204941 CAGTCGGTTAAGCCTAGCACT 59.795 52.381 0.00 0.00 34.25 4.40
1794 2814 2.301577 AGATGAGCAGTCGGTTAAGC 57.698 50.000 0.00 0.00 0.00 3.09
1796 2816 3.492656 GGCATAGATGAGCAGTCGGTTAA 60.493 47.826 0.00 0.00 0.00 2.01
1809 2829 6.151648 ACCGATCAAAATATTGGGCATAGATG 59.848 38.462 0.00 0.00 37.15 2.90
1821 2841 3.895656 TCCTCCTCGACCGATCAAAATAT 59.104 43.478 0.00 0.00 0.00 1.28
1841 2861 2.058001 CAATTTCCCCGCCCCTTCC 61.058 63.158 0.00 0.00 0.00 3.46
1842 2862 0.613572 TTCAATTTCCCCGCCCCTTC 60.614 55.000 0.00 0.00 0.00 3.46
1843 2863 0.042581 ATTCAATTTCCCCGCCCCTT 59.957 50.000 0.00 0.00 0.00 3.95
1847 2867 0.536724 AAGCATTCAATTTCCCCGCC 59.463 50.000 0.00 0.00 0.00 6.13
1849 2869 1.134729 CCCAAGCATTCAATTTCCCCG 60.135 52.381 0.00 0.00 0.00 5.73
1874 2894 1.909700 TTCAATCTGAAGGGCACACC 58.090 50.000 0.00 0.00 40.67 4.16
1931 2951 9.760077 ATTTATACTTGACTTACTCGGGTAATG 57.240 33.333 8.65 5.78 37.30 1.90
1938 3186 8.744011 GCAGTGTATTTATACTTGACTTACTCG 58.256 37.037 1.95 0.00 34.41 4.18
1980 3228 4.939439 CACCACCAACCTACCACTTATAAC 59.061 45.833 0.00 0.00 0.00 1.89
2006 3254 1.920325 CTGGTGGAAGCCTCTGGGA 60.920 63.158 0.00 0.00 33.58 4.37
2069 3317 9.905713 ATACTCAGTTAATCACACCAACATATT 57.094 29.630 0.00 0.00 0.00 1.28
2150 3398 2.431782 ACCAAAAGCTGCTGAACAACAT 59.568 40.909 1.35 0.00 0.00 2.71
2206 3455 8.006298 AGGAATCTAAGTTGAGATGTGACTAG 57.994 38.462 0.00 0.00 36.28 2.57
2223 3472 5.094387 ACAAAAGACTGGAGGAGGAATCTA 58.906 41.667 0.00 0.00 0.00 1.98
2224 3473 3.913163 ACAAAAGACTGGAGGAGGAATCT 59.087 43.478 0.00 0.00 0.00 2.40
2225 3474 4.019771 AGACAAAAGACTGGAGGAGGAATC 60.020 45.833 0.00 0.00 0.00 2.52
2226 3475 3.913163 AGACAAAAGACTGGAGGAGGAAT 59.087 43.478 0.00 0.00 0.00 3.01
2227 3476 3.318313 AGACAAAAGACTGGAGGAGGAA 58.682 45.455 0.00 0.00 0.00 3.36
2228 3477 2.900546 GAGACAAAAGACTGGAGGAGGA 59.099 50.000 0.00 0.00 0.00 3.71
2229 3478 2.903135 AGAGACAAAAGACTGGAGGAGG 59.097 50.000 0.00 0.00 0.00 4.30
2230 3479 3.924144 CAGAGACAAAAGACTGGAGGAG 58.076 50.000 0.00 0.00 0.00 3.69
2235 3484 3.071602 TCTTCCCAGAGACAAAAGACTGG 59.928 47.826 0.00 0.00 46.37 4.00
2236 3485 4.342862 TCTTCCCAGAGACAAAAGACTG 57.657 45.455 0.00 0.00 0.00 3.51
2237 3486 5.574970 ATTCTTCCCAGAGACAAAAGACT 57.425 39.130 0.00 0.00 0.00 3.24
2238 3487 7.745620 TTTATTCTTCCCAGAGACAAAAGAC 57.254 36.000 0.00 0.00 0.00 3.01
2239 3488 8.760980 TTTTTATTCTTCCCAGAGACAAAAGA 57.239 30.769 0.00 0.00 0.00 2.52
2240 3489 9.415544 CATTTTTATTCTTCCCAGAGACAAAAG 57.584 33.333 0.00 0.00 0.00 2.27
2241 3490 8.923270 ACATTTTTATTCTTCCCAGAGACAAAA 58.077 29.630 0.00 0.00 0.00 2.44
2242 3491 8.477419 ACATTTTTATTCTTCCCAGAGACAAA 57.523 30.769 0.00 0.00 0.00 2.83
2243 3492 9.753674 ATACATTTTTATTCTTCCCAGAGACAA 57.246 29.630 0.00 0.00 0.00 3.18
2244 3493 9.177608 CATACATTTTTATTCTTCCCAGAGACA 57.822 33.333 0.00 0.00 0.00 3.41
2245 3494 9.396022 TCATACATTTTTATTCTTCCCAGAGAC 57.604 33.333 0.00 0.00 0.00 3.36
2248 3497 9.699410 ACATCATACATTTTTATTCTTCCCAGA 57.301 29.630 0.00 0.00 0.00 3.86
2264 3513 9.770097 CTCTAACAGGTATCAAACATCATACAT 57.230 33.333 0.00 0.00 0.00 2.29
2265 3514 8.204160 CCTCTAACAGGTATCAAACATCATACA 58.796 37.037 0.00 0.00 37.53 2.29
2266 3515 8.421784 TCCTCTAACAGGTATCAAACATCATAC 58.578 37.037 0.00 0.00 43.95 2.39
2267 3516 8.547481 TCCTCTAACAGGTATCAAACATCATA 57.453 34.615 0.00 0.00 43.95 2.15
2268 3517 7.437713 TCCTCTAACAGGTATCAAACATCAT 57.562 36.000 0.00 0.00 43.95 2.45
2269 3518 6.630413 GCTCCTCTAACAGGTATCAAACATCA 60.630 42.308 0.00 0.00 43.95 3.07
2270 3519 5.755861 GCTCCTCTAACAGGTATCAAACATC 59.244 44.000 0.00 0.00 43.95 3.06
2271 3520 5.189736 TGCTCCTCTAACAGGTATCAAACAT 59.810 40.000 0.00 0.00 43.95 2.71
2272 3521 4.530553 TGCTCCTCTAACAGGTATCAAACA 59.469 41.667 0.00 0.00 43.95 2.83
2273 3522 5.086104 TGCTCCTCTAACAGGTATCAAAC 57.914 43.478 0.00 0.00 43.95 2.93
2274 3523 4.777896 ACTGCTCCTCTAACAGGTATCAAA 59.222 41.667 0.00 0.00 43.95 2.69
2275 3524 4.353777 ACTGCTCCTCTAACAGGTATCAA 58.646 43.478 0.00 0.00 43.95 2.57
2276 3525 3.982516 ACTGCTCCTCTAACAGGTATCA 58.017 45.455 0.00 0.00 43.95 2.15
2277 3526 5.112686 CAAACTGCTCCTCTAACAGGTATC 58.887 45.833 0.00 0.00 43.95 2.24
2278 3527 4.532521 ACAAACTGCTCCTCTAACAGGTAT 59.467 41.667 0.00 0.00 43.95 2.73
2279 3528 3.901844 ACAAACTGCTCCTCTAACAGGTA 59.098 43.478 0.00 0.00 43.95 3.08
2280 3529 2.706190 ACAAACTGCTCCTCTAACAGGT 59.294 45.455 0.00 0.00 43.95 4.00
2281 3530 3.409026 ACAAACTGCTCCTCTAACAGG 57.591 47.619 0.00 0.00 45.15 4.00
2282 3531 4.331168 GCATACAAACTGCTCCTCTAACAG 59.669 45.833 0.00 0.00 36.68 3.16
2283 3532 4.253685 GCATACAAACTGCTCCTCTAACA 58.746 43.478 0.00 0.00 36.68 2.41
2284 3533 3.623510 GGCATACAAACTGCTCCTCTAAC 59.376 47.826 0.00 0.00 39.60 2.34
2285 3534 3.263170 TGGCATACAAACTGCTCCTCTAA 59.737 43.478 0.00 0.00 39.60 2.10
2286 3535 2.837591 TGGCATACAAACTGCTCCTCTA 59.162 45.455 0.00 0.00 39.60 2.43
2287 3536 1.630369 TGGCATACAAACTGCTCCTCT 59.370 47.619 0.00 0.00 39.60 3.69
2288 3537 1.740025 GTGGCATACAAACTGCTCCTC 59.260 52.381 0.00 0.00 39.60 3.71
2289 3538 1.614317 GGTGGCATACAAACTGCTCCT 60.614 52.381 0.00 0.00 39.60 3.69
2290 3539 0.811281 GGTGGCATACAAACTGCTCC 59.189 55.000 0.00 0.00 39.60 4.70
2291 3540 1.826385 AGGTGGCATACAAACTGCTC 58.174 50.000 0.00 0.00 39.60 4.26
2292 3541 2.292828 AAGGTGGCATACAAACTGCT 57.707 45.000 0.00 0.00 39.60 4.24
2293 3542 2.610232 CCAAAGGTGGCATACAAACTGC 60.610 50.000 0.00 0.00 38.35 4.40
2294 3543 2.890311 TCCAAAGGTGGCATACAAACTG 59.110 45.455 0.00 0.00 45.54 3.16
2295 3544 3.237268 TCCAAAGGTGGCATACAAACT 57.763 42.857 0.00 0.00 45.54 2.66
2296 3545 3.258123 ACATCCAAAGGTGGCATACAAAC 59.742 43.478 0.00 0.00 45.54 2.93
2297 3546 3.505386 ACATCCAAAGGTGGCATACAAA 58.495 40.909 0.00 0.00 45.54 2.83
2298 3547 3.168035 ACATCCAAAGGTGGCATACAA 57.832 42.857 0.00 0.00 45.54 2.41
2299 3548 2.897271 ACATCCAAAGGTGGCATACA 57.103 45.000 0.00 0.00 45.54 2.29
2300 3549 3.763897 AGAAACATCCAAAGGTGGCATAC 59.236 43.478 0.00 0.00 45.54 2.39
2301 3550 3.763360 CAGAAACATCCAAAGGTGGCATA 59.237 43.478 0.00 0.00 45.54 3.14
2302 3551 2.564062 CAGAAACATCCAAAGGTGGCAT 59.436 45.455 0.00 0.00 45.54 4.40
2303 3552 1.962807 CAGAAACATCCAAAGGTGGCA 59.037 47.619 0.00 0.00 45.54 4.92
2304 3553 1.963515 ACAGAAACATCCAAAGGTGGC 59.036 47.619 0.00 0.00 45.54 5.01
2306 3555 5.659463 TGAAAACAGAAACATCCAAAGGTG 58.341 37.500 0.00 0.00 0.00 4.00
2307 3556 5.930837 TGAAAACAGAAACATCCAAAGGT 57.069 34.783 0.00 0.00 0.00 3.50
2308 3557 6.818142 AGTTTGAAAACAGAAACATCCAAAGG 59.182 34.615 8.53 0.00 41.30 3.11
2309 3558 7.761249 AGAGTTTGAAAACAGAAACATCCAAAG 59.239 33.333 8.53 0.00 41.30 2.77
2310 3559 7.545265 CAGAGTTTGAAAACAGAAACATCCAAA 59.455 33.333 8.53 0.00 41.30 3.28
2311 3560 7.035004 CAGAGTTTGAAAACAGAAACATCCAA 58.965 34.615 8.53 0.00 41.30 3.53
2312 3561 6.152661 ACAGAGTTTGAAAACAGAAACATCCA 59.847 34.615 8.53 0.00 41.30 3.41
2313 3562 6.564328 ACAGAGTTTGAAAACAGAAACATCC 58.436 36.000 8.53 0.00 41.30 3.51
2314 3563 7.542130 ACAACAGAGTTTGAAAACAGAAACATC 59.458 33.333 8.53 0.00 41.30 3.06
2315 3564 7.378181 ACAACAGAGTTTGAAAACAGAAACAT 58.622 30.769 8.53 0.00 41.30 2.71
2316 3565 6.744112 ACAACAGAGTTTGAAAACAGAAACA 58.256 32.000 8.53 0.00 41.30 2.83
2317 3566 8.736751 TTACAACAGAGTTTGAAAACAGAAAC 57.263 30.769 8.53 0.00 41.30 2.78
2318 3567 9.567848 GATTACAACAGAGTTTGAAAACAGAAA 57.432 29.630 8.53 0.00 41.30 2.52
2319 3568 8.956426 AGATTACAACAGAGTTTGAAAACAGAA 58.044 29.630 8.53 0.00 41.30 3.02
2320 3569 8.397906 CAGATTACAACAGAGTTTGAAAACAGA 58.602 33.333 8.53 0.00 41.30 3.41
2321 3570 7.645340 CCAGATTACAACAGAGTTTGAAAACAG 59.355 37.037 8.53 1.16 41.30 3.16
2322 3571 7.122055 ACCAGATTACAACAGAGTTTGAAAACA 59.878 33.333 8.53 0.00 41.30 2.83
2323 3572 7.432252 CACCAGATTACAACAGAGTTTGAAAAC 59.568 37.037 0.00 0.00 39.17 2.43
2324 3573 7.479980 CACCAGATTACAACAGAGTTTGAAAA 58.520 34.615 0.00 0.00 0.00 2.29
2325 3574 6.459573 GCACCAGATTACAACAGAGTTTGAAA 60.460 38.462 0.00 0.00 0.00 2.69
2326 3575 5.008613 GCACCAGATTACAACAGAGTTTGAA 59.991 40.000 0.00 0.00 0.00 2.69
2327 3576 4.515191 GCACCAGATTACAACAGAGTTTGA 59.485 41.667 0.00 0.00 0.00 2.69
2328 3577 4.516698 AGCACCAGATTACAACAGAGTTTG 59.483 41.667 0.00 0.00 0.00 2.93
2329 3578 4.516698 CAGCACCAGATTACAACAGAGTTT 59.483 41.667 0.00 0.00 0.00 2.66
2330 3579 4.067896 CAGCACCAGATTACAACAGAGTT 58.932 43.478 0.00 0.00 0.00 3.01
2331 3580 3.557898 CCAGCACCAGATTACAACAGAGT 60.558 47.826 0.00 0.00 0.00 3.24
2332 3581 3.005554 CCAGCACCAGATTACAACAGAG 58.994 50.000 0.00 0.00 0.00 3.35
2333 3582 2.290260 CCCAGCACCAGATTACAACAGA 60.290 50.000 0.00 0.00 0.00 3.41
2334 3583 2.086869 CCCAGCACCAGATTACAACAG 58.913 52.381 0.00 0.00 0.00 3.16
2335 3584 1.702401 TCCCAGCACCAGATTACAACA 59.298 47.619 0.00 0.00 0.00 3.33
2336 3585 2.084546 GTCCCAGCACCAGATTACAAC 58.915 52.381 0.00 0.00 0.00 3.32
2337 3586 1.004277 GGTCCCAGCACCAGATTACAA 59.996 52.381 0.00 0.00 36.32 2.41
2338 3587 0.618458 GGTCCCAGCACCAGATTACA 59.382 55.000 0.00 0.00 36.32 2.41
2339 3588 0.912486 AGGTCCCAGCACCAGATTAC 59.088 55.000 0.00 0.00 39.16 1.89
2340 3589 0.911769 CAGGTCCCAGCACCAGATTA 59.088 55.000 0.00 0.00 39.16 1.75
2341 3590 1.687612 CAGGTCCCAGCACCAGATT 59.312 57.895 0.00 0.00 39.16 2.40
2342 3591 2.976490 GCAGGTCCCAGCACCAGAT 61.976 63.158 0.00 0.00 39.16 2.90
2343 3592 3.640407 GCAGGTCCCAGCACCAGA 61.640 66.667 0.00 0.00 39.16 3.86
2344 3593 2.703675 AAAGCAGGTCCCAGCACCAG 62.704 60.000 3.43 0.00 39.16 4.00
2345 3594 2.766925 AAAGCAGGTCCCAGCACCA 61.767 57.895 3.43 0.00 39.16 4.17
2346 3595 2.116125 AAAGCAGGTCCCAGCACC 59.884 61.111 3.43 0.00 36.58 5.01
2347 3596 1.228245 TCAAAGCAGGTCCCAGCAC 60.228 57.895 3.43 0.00 0.00 4.40
2348 3597 1.073722 CTCAAAGCAGGTCCCAGCA 59.926 57.895 3.43 0.00 0.00 4.41
2349 3598 2.338785 GCTCAAAGCAGGTCCCAGC 61.339 63.158 0.00 0.00 41.89 4.85
2350 3599 1.676967 GGCTCAAAGCAGGTCCCAG 60.677 63.158 0.86 0.00 44.75 4.45
2351 3600 2.436109 GGCTCAAAGCAGGTCCCA 59.564 61.111 0.86 0.00 44.75 4.37
2352 3601 2.361737 GGGCTCAAAGCAGGTCCC 60.362 66.667 0.86 0.00 44.75 4.46
2353 3602 1.676967 CTGGGCTCAAAGCAGGTCC 60.677 63.158 0.86 0.00 44.75 4.46
2354 3603 1.676967 CCTGGGCTCAAAGCAGGTC 60.677 63.158 0.86 0.00 44.75 3.85
2355 3604 2.437897 CCTGGGCTCAAAGCAGGT 59.562 61.111 0.86 0.00 44.75 4.00
2356 3605 3.066814 GCCTGGGCTCAAAGCAGG 61.067 66.667 4.12 0.00 44.75 4.85
2357 3606 3.066814 GGCCTGGGCTCAAAGCAG 61.067 66.667 13.80 0.00 44.75 4.24
2358 3607 1.788518 TAAGGCCTGGGCTCAAAGCA 61.789 55.000 24.18 2.14 44.75 3.91
2359 3608 1.000896 TAAGGCCTGGGCTCAAAGC 60.001 57.895 24.18 0.00 37.50 3.51
2360 3609 0.620556 TCTAAGGCCTGGGCTCAAAG 59.379 55.000 24.18 19.49 37.50 2.77
2361 3610 1.212935 GATCTAAGGCCTGGGCTCAAA 59.787 52.381 24.18 11.70 37.50 2.69
2362 3611 0.839946 GATCTAAGGCCTGGGCTCAA 59.160 55.000 24.18 13.61 37.50 3.02
2363 3612 0.030705 AGATCTAAGGCCTGGGCTCA 60.031 55.000 24.18 8.33 37.50 4.26
2364 3613 0.684535 GAGATCTAAGGCCTGGGCTC 59.315 60.000 24.18 10.74 37.50 4.70
2365 3614 0.267356 AGAGATCTAAGGCCTGGGCT 59.733 55.000 18.27 18.27 41.24 5.19
2366 3615 1.135960 AAGAGATCTAAGGCCTGGGC 58.864 55.000 5.69 13.15 41.06 5.36
2367 3616 1.419387 CCAAGAGATCTAAGGCCTGGG 59.581 57.143 5.69 1.66 0.00 4.45
2368 3617 1.419387 CCCAAGAGATCTAAGGCCTGG 59.581 57.143 5.69 2.11 0.00 4.45
2369 3618 1.419387 CCCCAAGAGATCTAAGGCCTG 59.581 57.143 5.69 0.00 0.00 4.85
2370 3619 1.697291 CCCCCAAGAGATCTAAGGCCT 60.697 57.143 0.00 0.00 0.00 5.19
2371 3620 0.767998 CCCCCAAGAGATCTAAGGCC 59.232 60.000 0.00 0.00 0.00 5.19
2372 3621 1.418264 GACCCCCAAGAGATCTAAGGC 59.582 57.143 0.00 0.00 0.00 4.35
2373 3622 2.050918 GGACCCCCAAGAGATCTAAGG 58.949 57.143 0.00 0.00 0.00 2.69
2374 3623 2.703007 CAGGACCCCCAAGAGATCTAAG 59.297 54.545 0.00 0.00 33.88 2.18
2375 3624 2.764269 CAGGACCCCCAAGAGATCTAA 58.236 52.381 0.00 0.00 33.88 2.10
2376 3625 1.692762 GCAGGACCCCCAAGAGATCTA 60.693 57.143 0.00 0.00 33.88 1.98
2377 3626 0.985490 GCAGGACCCCCAAGAGATCT 60.985 60.000 0.00 0.00 33.88 2.75
2378 3627 0.985490 AGCAGGACCCCCAAGAGATC 60.985 60.000 0.00 0.00 33.88 2.75
2379 3628 0.551131 AAGCAGGACCCCCAAGAGAT 60.551 55.000 0.00 0.00 33.88 2.75
2380 3629 0.772124 AAAGCAGGACCCCCAAGAGA 60.772 55.000 0.00 0.00 33.88 3.10
2381 3630 0.610232 CAAAGCAGGACCCCCAAGAG 60.610 60.000 0.00 0.00 33.88 2.85
2382 3631 1.460255 CAAAGCAGGACCCCCAAGA 59.540 57.895 0.00 0.00 33.88 3.02
2383 3632 1.607467 CCAAAGCAGGACCCCCAAG 60.607 63.158 0.00 0.00 33.88 3.61
2384 3633 2.525592 CCAAAGCAGGACCCCCAA 59.474 61.111 0.00 0.00 33.88 4.12
2385 3634 3.589542 CCCAAAGCAGGACCCCCA 61.590 66.667 0.00 0.00 33.88 4.96
2386 3635 4.382541 CCCCAAAGCAGGACCCCC 62.383 72.222 0.00 0.00 0.00 5.40
2387 3636 4.382541 CCCCCAAAGCAGGACCCC 62.383 72.222 0.00 0.00 0.00 4.95
2389 3638 2.150014 TTAGCCCCCAAAGCAGGACC 62.150 60.000 0.00 0.00 0.00 4.46
2390 3639 0.033109 ATTAGCCCCCAAAGCAGGAC 60.033 55.000 0.00 0.00 0.00 3.85
2391 3640 0.033208 CATTAGCCCCCAAAGCAGGA 60.033 55.000 0.00 0.00 0.00 3.86
2392 3641 1.044790 CCATTAGCCCCCAAAGCAGG 61.045 60.000 0.00 0.00 0.00 4.85
2393 3642 1.044790 CCCATTAGCCCCCAAAGCAG 61.045 60.000 0.00 0.00 0.00 4.24
2394 3643 1.001503 CCCATTAGCCCCCAAAGCA 59.998 57.895 0.00 0.00 0.00 3.91
2395 3644 0.756815 CTCCCATTAGCCCCCAAAGC 60.757 60.000 0.00 0.00 0.00 3.51
2396 3645 0.106015 CCTCCCATTAGCCCCCAAAG 60.106 60.000 0.00 0.00 0.00 2.77
2397 3646 1.589399 CCCTCCCATTAGCCCCCAAA 61.589 60.000 0.00 0.00 0.00 3.28
2398 3647 2.012210 CCCTCCCATTAGCCCCCAA 61.012 63.158 0.00 0.00 0.00 4.12
2399 3648 2.369568 CCCTCCCATTAGCCCCCA 60.370 66.667 0.00 0.00 0.00 4.96
2400 3649 3.185941 CCCCTCCCATTAGCCCCC 61.186 72.222 0.00 0.00 0.00 5.40
2401 3650 1.699930 TTCCCCTCCCATTAGCCCC 60.700 63.158 0.00 0.00 0.00 5.80
2402 3651 1.720077 CCTTCCCCTCCCATTAGCCC 61.720 65.000 0.00 0.00 0.00 5.19
2403 3652 1.720077 CCCTTCCCCTCCCATTAGCC 61.720 65.000 0.00 0.00 0.00 3.93
2404 3653 0.697854 TCCCTTCCCCTCCCATTAGC 60.698 60.000 0.00 0.00 0.00 3.09
2405 3654 1.707427 CATCCCTTCCCCTCCCATTAG 59.293 57.143 0.00 0.00 0.00 1.73
2406 3655 1.702234 CCATCCCTTCCCCTCCCATTA 60.702 57.143 0.00 0.00 0.00 1.90
2407 3656 1.001140 CCATCCCTTCCCCTCCCATT 61.001 60.000 0.00 0.00 0.00 3.16
2408 3657 1.387926 CCATCCCTTCCCCTCCCAT 60.388 63.158 0.00 0.00 0.00 4.00
2409 3658 2.044450 CCATCCCTTCCCCTCCCA 59.956 66.667 0.00 0.00 0.00 4.37
2410 3659 3.502875 GCCATCCCTTCCCCTCCC 61.503 72.222 0.00 0.00 0.00 4.30
2411 3660 2.000825 GAAGCCATCCCTTCCCCTCC 62.001 65.000 0.00 0.00 36.15 4.30
2412 3661 1.534203 GAAGCCATCCCTTCCCCTC 59.466 63.158 0.00 0.00 36.15 4.30
2413 3662 3.761182 GAAGCCATCCCTTCCCCT 58.239 61.111 0.00 0.00 36.15 4.79
2422 3671 0.472044 GAGGAAGAGGGGAAGCCATC 59.528 60.000 0.00 0.00 0.00 3.51
2423 3672 0.253347 TGAGGAAGAGGGGAAGCCAT 60.253 55.000 0.00 0.00 0.00 4.40
2424 3673 0.475632 TTGAGGAAGAGGGGAAGCCA 60.476 55.000 0.00 0.00 0.00 4.75
2425 3674 0.922626 ATTGAGGAAGAGGGGAAGCC 59.077 55.000 0.00 0.00 0.00 4.35
2426 3675 2.486370 GCTATTGAGGAAGAGGGGAAGC 60.486 54.545 0.00 0.00 0.00 3.86
2427 3676 2.105649 GGCTATTGAGGAAGAGGGGAAG 59.894 54.545 0.00 0.00 0.00 3.46
2428 3677 2.127708 GGCTATTGAGGAAGAGGGGAA 58.872 52.381 0.00 0.00 0.00 3.97
2429 3678 1.009552 TGGCTATTGAGGAAGAGGGGA 59.990 52.381 0.00 0.00 0.00 4.81
2430 3679 1.419387 CTGGCTATTGAGGAAGAGGGG 59.581 57.143 0.00 0.00 0.00 4.79
2431 3680 2.122768 ACTGGCTATTGAGGAAGAGGG 58.877 52.381 0.00 0.00 0.00 4.30
2432 3681 2.768527 TCACTGGCTATTGAGGAAGAGG 59.231 50.000 0.00 0.00 0.00 3.69
2433 3682 4.344679 AGATCACTGGCTATTGAGGAAGAG 59.655 45.833 0.00 0.00 0.00 2.85
2434 3683 4.293494 AGATCACTGGCTATTGAGGAAGA 58.707 43.478 0.00 0.00 0.00 2.87
2435 3684 4.502950 GGAGATCACTGGCTATTGAGGAAG 60.503 50.000 0.00 0.00 0.00 3.46
2436 3685 3.389329 GGAGATCACTGGCTATTGAGGAA 59.611 47.826 0.00 0.00 0.00 3.36
2437 3686 2.968574 GGAGATCACTGGCTATTGAGGA 59.031 50.000 0.00 0.00 0.00 3.71
2438 3687 2.288702 CGGAGATCACTGGCTATTGAGG 60.289 54.545 0.00 0.00 0.00 3.86
2439 3688 2.625314 TCGGAGATCACTGGCTATTGAG 59.375 50.000 0.00 0.00 0.00 3.02
2440 3689 2.625314 CTCGGAGATCACTGGCTATTGA 59.375 50.000 0.00 0.00 33.89 2.57
2441 3690 2.625314 TCTCGGAGATCACTGGCTATTG 59.375 50.000 2.97 0.00 33.89 1.90
2442 3691 2.890311 CTCTCGGAGATCACTGGCTATT 59.110 50.000 8.39 0.00 33.89 1.73
2443 3692 2.107378 TCTCTCGGAGATCACTGGCTAT 59.893 50.000 8.39 0.00 33.35 2.97
2444 3693 1.490910 TCTCTCGGAGATCACTGGCTA 59.509 52.381 8.39 0.00 33.35 3.93
2445 3694 0.257328 TCTCTCGGAGATCACTGGCT 59.743 55.000 8.39 0.00 33.35 4.75
2446 3695 1.000385 CATCTCTCGGAGATCACTGGC 60.000 57.143 8.39 0.00 45.03 4.85
2447 3696 1.000385 GCATCTCTCGGAGATCACTGG 60.000 57.143 8.39 0.00 45.03 4.00
2448 3697 1.000385 GGCATCTCTCGGAGATCACTG 60.000 57.143 8.39 5.25 45.03 3.66
2449 3698 1.327303 GGCATCTCTCGGAGATCACT 58.673 55.000 8.39 0.00 45.03 3.41
2450 3699 1.035923 TGGCATCTCTCGGAGATCAC 58.964 55.000 8.39 9.20 45.03 3.06
2451 3700 2.006805 ATGGCATCTCTCGGAGATCA 57.993 50.000 8.39 9.41 45.03 2.92
2452 3701 3.088532 ACTATGGCATCTCTCGGAGATC 58.911 50.000 8.39 8.28 45.03 2.75
2454 3703 2.666272 ACTATGGCATCTCTCGGAGA 57.334 50.000 1.65 7.60 43.20 3.71
2455 3704 2.163412 GCTACTATGGCATCTCTCGGAG 59.837 54.545 1.65 0.00 0.00 4.63
2456 3705 2.163509 GCTACTATGGCATCTCTCGGA 58.836 52.381 1.65 0.00 0.00 4.55
2457 3706 2.166829 AGCTACTATGGCATCTCTCGG 58.833 52.381 1.65 0.00 0.00 4.63
2458 3707 3.932545 AAGCTACTATGGCATCTCTCG 57.067 47.619 1.65 0.00 0.00 4.04
2459 3708 5.207110 TGAAAGCTACTATGGCATCTCTC 57.793 43.478 1.65 0.00 0.00 3.20
2460 3709 5.071519 ACATGAAAGCTACTATGGCATCTCT 59.928 40.000 1.65 0.00 0.00 3.10
2461 3710 5.303971 ACATGAAAGCTACTATGGCATCTC 58.696 41.667 1.65 0.00 0.00 2.75
2462 3711 5.301835 ACATGAAAGCTACTATGGCATCT 57.698 39.130 1.65 0.00 0.00 2.90
2463 3712 6.261826 AGAAACATGAAAGCTACTATGGCATC 59.738 38.462 1.65 0.00 0.00 3.91
2464 3713 6.125029 AGAAACATGAAAGCTACTATGGCAT 58.875 36.000 4.88 4.88 0.00 4.40
2465 3714 5.500234 AGAAACATGAAAGCTACTATGGCA 58.500 37.500 0.00 0.00 0.00 4.92
2466 3715 6.442513 AAGAAACATGAAAGCTACTATGGC 57.557 37.500 0.00 0.00 0.00 4.40
2489 3738 6.891388 TCACCAGGTCTTACAGAAGTAAAAA 58.109 36.000 0.00 0.00 39.58 1.94
2490 3739 6.488769 TCACCAGGTCTTACAGAAGTAAAA 57.511 37.500 0.00 0.00 39.58 1.52
2491 3740 6.681729 ATCACCAGGTCTTACAGAAGTAAA 57.318 37.500 0.00 0.00 39.58 2.01
2492 3741 6.681729 AATCACCAGGTCTTACAGAAGTAA 57.318 37.500 0.00 0.00 37.86 2.24
2493 3742 6.497259 AGAAATCACCAGGTCTTACAGAAGTA 59.503 38.462 0.00 0.00 34.03 2.24
2494 3743 5.308237 AGAAATCACCAGGTCTTACAGAAGT 59.692 40.000 0.00 0.00 34.03 3.01
2495 3744 5.799213 AGAAATCACCAGGTCTTACAGAAG 58.201 41.667 0.00 0.00 0.00 2.85
2496 3745 5.544176 AGAGAAATCACCAGGTCTTACAGAA 59.456 40.000 0.00 0.00 0.00 3.02
2497 3746 5.087323 AGAGAAATCACCAGGTCTTACAGA 58.913 41.667 0.00 0.00 0.00 3.41
2498 3747 5.413309 AGAGAAATCACCAGGTCTTACAG 57.587 43.478 0.00 0.00 0.00 2.74
2499 3748 5.825593 AAGAGAAATCACCAGGTCTTACA 57.174 39.130 0.00 0.00 0.00 2.41
2500 3749 7.281100 CCATTAAGAGAAATCACCAGGTCTTAC 59.719 40.741 0.00 0.00 0.00 2.34
2501 3750 7.182026 TCCATTAAGAGAAATCACCAGGTCTTA 59.818 37.037 0.00 0.00 0.00 2.10
2502 3751 6.012508 TCCATTAAGAGAAATCACCAGGTCTT 60.013 38.462 0.00 0.00 0.00 3.01
2503 3752 5.488919 TCCATTAAGAGAAATCACCAGGTCT 59.511 40.000 0.00 0.00 0.00 3.85
2504 3753 5.745227 TCCATTAAGAGAAATCACCAGGTC 58.255 41.667 0.00 0.00 0.00 3.85
2505 3754 5.779241 TCCATTAAGAGAAATCACCAGGT 57.221 39.130 0.00 0.00 0.00 4.00
2506 3755 7.651027 ATTTCCATTAAGAGAAATCACCAGG 57.349 36.000 8.84 0.00 38.06 4.45
2513 3762 7.796054 TCTCTCCGATTTCCATTAAGAGAAAT 58.204 34.615 12.81 12.81 43.58 2.17
2514 3763 7.182817 TCTCTCCGATTTCCATTAAGAGAAA 57.817 36.000 5.45 5.45 35.95 2.52
2515 3764 6.791867 TCTCTCCGATTTCCATTAAGAGAA 57.208 37.500 0.00 0.00 35.95 2.87
2516 3765 6.791867 TTCTCTCCGATTTCCATTAAGAGA 57.208 37.500 0.00 0.00 36.81 3.10
2517 3766 6.018343 GCTTTCTCTCCGATTTCCATTAAGAG 60.018 42.308 0.00 0.00 0.00 2.85
2518 3767 5.817816 GCTTTCTCTCCGATTTCCATTAAGA 59.182 40.000 0.00 0.00 0.00 2.10
2519 3768 5.819901 AGCTTTCTCTCCGATTTCCATTAAG 59.180 40.000 0.00 0.00 0.00 1.85
2520 3769 5.745227 AGCTTTCTCTCCGATTTCCATTAA 58.255 37.500 0.00 0.00 0.00 1.40
2521 3770 5.129485 AGAGCTTTCTCTCCGATTTCCATTA 59.871 40.000 0.00 0.00 46.32 1.90
2522 3771 4.080638 AGAGCTTTCTCTCCGATTTCCATT 60.081 41.667 0.00 0.00 46.32 3.16
2523 3772 3.454082 AGAGCTTTCTCTCCGATTTCCAT 59.546 43.478 0.00 0.00 46.32 3.41
2524 3773 2.834549 AGAGCTTTCTCTCCGATTTCCA 59.165 45.455 0.00 0.00 46.32 3.53
2525 3774 3.535280 AGAGCTTTCTCTCCGATTTCC 57.465 47.619 0.00 0.00 46.32 3.13
2568 3817 8.595421 GCCTCCTAGGTAAACTATAGCTAAATT 58.405 37.037 9.08 0.00 37.80 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.