Multiple sequence alignment - TraesCS7D01G476600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G476600 chr7D 100.000 4471 0 0 1832 6302 588034299 588038769 0.000000e+00 8257.0
1 TraesCS7D01G476600 chr7D 100.000 1536 0 0 1 1536 588032468 588034003 0.000000e+00 2837.0
2 TraesCS7D01G476600 chr7D 94.444 36 2 0 5513 5548 588037940 588037975 8.830000e-04 56.5
3 TraesCS7D01G476600 chr7D 94.444 36 2 0 5473 5508 588037980 588038015 8.830000e-04 56.5
4 TraesCS7D01G476600 chr7A 96.318 3992 111 14 1832 5793 679893565 679897550 0.000000e+00 6525.0
5 TraesCS7D01G476600 chr7A 85.417 1008 62 37 560 1534 679892535 679893490 0.000000e+00 968.0
6 TraesCS7D01G476600 chr7A 84.211 532 27 25 5789 6302 679897845 679898337 1.240000e-126 464.0
7 TraesCS7D01G476600 chr7A 81.407 398 47 12 117 497 679892144 679892531 3.690000e-77 300.0
8 TraesCS7D01G476600 chr7A 88.172 93 10 1 5 96 679891886 679891978 6.680000e-20 110.0
9 TraesCS7D01G476600 chr7A 97.368 38 1 0 1 38 566122987 566123024 1.470000e-06 65.8
10 TraesCS7D01G476600 chr7A 92.500 40 2 1 5513 5552 679897224 679897262 8.830000e-04 56.5
11 TraesCS7D01G476600 chr7A 94.444 36 2 0 5473 5508 679897264 679897299 8.830000e-04 56.5
12 TraesCS7D01G476600 chr7B 97.202 2073 54 3 2988 5059 660336860 660338929 0.000000e+00 3504.0
13 TraesCS7D01G476600 chr7B 94.449 1171 51 4 1832 2990 660335627 660336795 0.000000e+00 1790.0
14 TraesCS7D01G476600 chr7B 91.921 755 33 18 5058 5793 660339012 660339757 0.000000e+00 1031.0
15 TraesCS7D01G476600 chr7B 90.086 696 36 15 608 1291 660334659 660335333 0.000000e+00 872.0
16 TraesCS7D01G476600 chr7B 89.077 531 37 9 5789 6302 660340003 660340529 1.920000e-179 640.0
17 TraesCS7D01G476600 chr7B 83.669 447 51 10 113 544 660249486 660249925 9.840000e-108 401.0
18 TraesCS7D01G476600 chr7B 87.273 220 19 4 1320 1534 660335336 660335551 6.310000e-60 243.0
19 TraesCS7D01G476600 chr7B 94.118 85 5 0 19 103 660249064 660249148 5.130000e-26 130.0
20 TraesCS7D01G476600 chr7B 88.298 94 8 2 5710 5801 619127444 619127352 6.680000e-20 110.0
21 TraesCS7D01G476600 chr7B 96.667 60 2 0 5481 5540 660339473 660339532 4.020000e-17 100.0
22 TraesCS7D01G476600 chr7B 94.444 36 2 0 5513 5548 660339425 660339460 8.830000e-04 56.5
23 TraesCS7D01G476600 chr5B 90.110 91 6 2 5710 5798 549426785 549426874 1.440000e-21 115.0
24 TraesCS7D01G476600 chr5B 90.110 91 6 2 5710 5798 549460441 549460530 1.440000e-21 115.0
25 TraesCS7D01G476600 chr5B 89.655 87 6 3 5710 5794 174872652 174872737 2.400000e-19 108.0
26 TraesCS7D01G476600 chr6A 89.655 87 7 1 5710 5794 562521698 562521612 6.680000e-20 110.0
27 TraesCS7D01G476600 chr6A 97.222 36 1 0 2 37 594499887 594499852 1.900000e-05 62.1
28 TraesCS7D01G476600 chr2B 89.655 87 7 1 5710 5794 233169229 233169315 6.680000e-20 110.0
29 TraesCS7D01G476600 chr4B 88.506 87 8 2 5710 5794 67341907 67341821 3.110000e-18 104.0
30 TraesCS7D01G476600 chr1B 94.737 57 3 0 34 90 251884787 251884843 8.700000e-14 89.8
31 TraesCS7D01G476600 chr1B 97.222 36 1 0 2 37 170102793 170102828 1.900000e-05 62.1
32 TraesCS7D01G476600 chr1B 97.222 36 1 0 2 37 589137151 589137116 1.900000e-05 62.1
33 TraesCS7D01G476600 chr5A 97.297 37 1 0 1 37 676879389 676879353 5.270000e-06 63.9
34 TraesCS7D01G476600 chr5A 100.000 28 0 0 59 86 115092255 115092282 1.100000e-02 52.8
35 TraesCS7D01G476600 chr3A 97.297 37 1 0 1 37 212090446 212090482 5.270000e-06 63.9
36 TraesCS7D01G476600 chr2A 97.297 37 1 0 2 38 214419569 214419533 5.270000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G476600 chr7D 588032468 588038769 6301 False 2801.750000 8257 97.222000 1 6302 4 chr7D.!!$F1 6301
1 TraesCS7D01G476600 chr7A 679891886 679898337 6451 False 1211.428571 6525 88.924143 5 6302 7 chr7A.!!$F2 6297
2 TraesCS7D01G476600 chr7B 660334659 660340529 5870 False 1029.562500 3504 92.639875 608 6302 8 chr7B.!!$F2 5694
3 TraesCS7D01G476600 chr7B 660249064 660249925 861 False 265.500000 401 88.893500 19 544 2 chr7B.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 649 0.039618 GGTTGAGAGGAAATGGGCCA 59.960 55.000 9.61 9.61 0.00 5.36 F
504 851 0.168128 GAACCGTGAAAAGCATCCGG 59.832 55.000 0.00 0.00 44.06 5.14 F
1270 1649 0.038618 TGTGGTCGTCAGATCAACCG 60.039 55.000 0.00 0.00 39.54 4.44 F
1450 1838 0.037605 AAGCTACGTGCGTAGGCTTT 60.038 50.000 26.37 14.41 45.87 3.51 F
2359 2751 0.581529 CTTTCACGCGTTCTCTGCAA 59.418 50.000 10.22 0.00 0.00 4.08 F
2366 2758 1.971962 CGCGTTCTCTGCAATTTTCAC 59.028 47.619 0.00 0.00 0.00 3.18 F
2525 2923 2.037772 CCGACTCTATCCTGAATTGGGG 59.962 54.545 0.00 0.00 0.00 4.96 F
2644 3042 2.417339 TCGGTGCGTATTCAGCTATC 57.583 50.000 0.00 0.00 35.28 2.08 F
4250 4732 2.251818 CTAGCCAGCCTGAGCCTATTA 58.748 52.381 0.00 0.00 41.25 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1630 0.038618 CGGTTGATCTGACGACCACA 60.039 55.000 13.52 0.0 42.68 4.17 R
1413 1801 0.317160 TTCACTACAGTCCAGCACCG 59.683 55.000 0.00 0.0 0.00 4.94 R
2644 3042 0.940126 GGCCATATGAGAAGTGCACG 59.060 55.000 12.01 0.0 0.00 5.34 R
2821 3225 5.130311 TGGCTCAGCATTAAATACTACTCCA 59.870 40.000 0.00 0.0 0.00 3.86 R
3578 4060 0.833287 GCTGATGCCTCCCTTACAGA 59.167 55.000 0.00 0.0 0.00 3.41 R
4222 4704 1.699634 TCAGGCTGGCTAGTTGAAGTT 59.300 47.619 15.73 0.0 0.00 2.66 R
4250 4732 4.516698 GTCAGTGGTGTTCAGTTCATCAAT 59.483 41.667 0.00 0.0 0.00 2.57 R
4606 5088 1.404717 CCATCACTCTGACAGGGTTCG 60.405 57.143 4.85 0.0 0.00 3.95 R
5624 6192 0.039618 ATGGAAAAGGACACCGGCAT 59.960 50.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 3.788766 CCTGTAGCAACGCACGGC 61.789 66.667 0.00 0.00 0.00 5.68
81 82 1.423845 CAACGCACGGCCATTCTAC 59.576 57.895 2.24 0.00 0.00 2.59
86 87 1.571919 GCACGGCCATTCTACTAGTG 58.428 55.000 5.39 0.00 0.00 2.74
98 103 9.043079 GCCATTCTACTAGTGTTTCCTAATTAC 57.957 37.037 5.39 0.00 0.00 1.89
130 463 2.281761 CCACTGCCACACCACCTC 60.282 66.667 0.00 0.00 0.00 3.85
142 475 2.158325 ACACCACCTCCAAATCCATGTT 60.158 45.455 0.00 0.00 0.00 2.71
191 524 6.432783 ACGATGGGTTACAATCAGATCAAAAA 59.567 34.615 0.00 0.00 0.00 1.94
214 547 5.427036 AATTTAAATCCACACAACGTCGT 57.573 34.783 0.10 0.00 0.00 4.34
223 556 3.305964 CACACAACGTCGTAGAGATTGT 58.694 45.455 0.00 0.00 36.95 2.71
241 574 0.521291 GTTGTCATTGCAAGCGCCTA 59.479 50.000 2.29 0.00 37.32 3.93
245 578 1.083806 TCATTGCAAGCGCCTAGTCG 61.084 55.000 2.29 0.00 37.32 4.18
251 584 0.101399 CAAGCGCCTAGTCGTGAGAT 59.899 55.000 2.29 0.00 45.19 2.75
254 587 0.945813 GCGCCTAGTCGTGAGATAGT 59.054 55.000 0.00 0.00 45.19 2.12
262 595 4.294416 AGTCGTGAGATAGTTTGATCCG 57.706 45.455 0.00 0.00 45.19 4.18
282 615 2.935191 GCATGTCGTGTTGCGTCA 59.065 55.556 0.00 0.00 42.13 4.35
286 619 2.028484 GTCGTGTTGCGTCAGGGA 59.972 61.111 0.00 0.00 42.13 4.20
288 621 1.300620 TCGTGTTGCGTCAGGGAAG 60.301 57.895 0.00 0.00 42.13 3.46
289 622 1.300620 CGTGTTGCGTCAGGGAAGA 60.301 57.895 0.00 0.00 35.54 2.87
290 623 1.284982 CGTGTTGCGTCAGGGAAGAG 61.285 60.000 0.00 0.00 35.54 2.85
291 624 0.951040 GTGTTGCGTCAGGGAAGAGG 60.951 60.000 0.00 0.00 0.00 3.69
292 625 1.376037 GTTGCGTCAGGGAAGAGGG 60.376 63.158 0.00 0.00 0.00 4.30
293 626 3.254024 TTGCGTCAGGGAAGAGGGC 62.254 63.158 0.00 0.00 0.00 5.19
294 627 4.475135 GCGTCAGGGAAGAGGGCC 62.475 72.222 0.00 0.00 0.00 5.80
316 649 0.039618 GGTTGAGAGGAAATGGGCCA 59.960 55.000 9.61 9.61 0.00 5.36
334 667 4.565444 GGGCCAGGCAATATTTTTGAAAGT 60.565 41.667 15.19 0.00 0.00 2.66
335 668 4.392754 GGCCAGGCAATATTTTTGAAAGTG 59.607 41.667 15.19 0.00 0.00 3.16
343 676 9.862585 GGCAATATTTTTGAAAGTGTAAAACTG 57.137 29.630 0.00 0.00 39.81 3.16
355 688 7.891498 AAGTGTAAAACTGAACAAGGGTTAT 57.109 32.000 0.00 0.00 39.81 1.89
356 689 7.272037 AGTGTAAAACTGAACAAGGGTTATG 57.728 36.000 0.00 0.00 37.88 1.90
358 691 7.558444 AGTGTAAAACTGAACAAGGGTTATGAA 59.442 33.333 0.00 0.00 37.88 2.57
359 692 8.357402 GTGTAAAACTGAACAAGGGTTATGAAT 58.643 33.333 0.00 0.00 37.36 2.57
384 729 3.899980 TGAGAGGGATCATGTGGTATCAG 59.100 47.826 0.00 0.00 0.00 2.90
387 732 3.246301 AGGGATCATGTGGTATCAGAGG 58.754 50.000 0.00 0.00 0.00 3.69
420 765 2.870372 GCCTGTCGCATTGTGGAC 59.130 61.111 0.00 0.68 37.47 4.02
432 777 0.314935 TTGTGGACGTACCGAGGAAC 59.685 55.000 0.00 0.00 42.61 3.62
438 783 1.210931 CGTACCGAGGAACGCAAGA 59.789 57.895 0.00 0.00 41.07 3.02
504 851 0.168128 GAACCGTGAAAAGCATCCGG 59.832 55.000 0.00 0.00 44.06 5.14
513 860 5.227152 GTGAAAAGCATCCGGTAAATTGTT 58.773 37.500 0.00 0.00 0.00 2.83
526 874 5.214417 GGTAAATTGTTTGTAACCGGACAC 58.786 41.667 9.46 5.75 0.00 3.67
529 877 2.243602 TGTTTGTAACCGGACACTCC 57.756 50.000 9.46 0.00 0.00 3.85
544 892 0.392060 ACTCCGCGGGGAAACATAAC 60.392 55.000 36.26 0.00 43.27 1.89
545 893 1.426041 CTCCGCGGGGAAACATAACG 61.426 60.000 24.25 4.18 43.27 3.18
546 894 2.466140 CCGCGGGGAAACATAACGG 61.466 63.158 20.10 0.00 34.06 4.44
547 895 2.795973 GCGGGGAAACATAACGGC 59.204 61.111 0.00 0.00 0.00 5.68
548 896 2.767445 GCGGGGAAACATAACGGCC 61.767 63.158 0.00 0.00 0.00 6.13
549 897 2.116533 CGGGGAAACATAACGGCCC 61.117 63.158 0.00 0.00 38.08 5.80
550 898 3.929002 GGGAAACATAACGGCCCC 58.071 61.111 0.00 0.00 32.50 5.80
551 899 2.116533 GGGAAACATAACGGCCCCG 61.117 63.158 4.96 4.96 46.03 5.73
552 900 2.116533 GGAAACATAACGGCCCCGG 61.117 63.158 11.83 0.00 44.69 5.73
553 901 1.377594 GAAACATAACGGCCCCGGT 60.378 57.895 11.83 7.13 44.69 5.28
554 902 1.650314 GAAACATAACGGCCCCGGTG 61.650 60.000 7.66 7.40 44.69 4.94
555 903 2.127027 AAACATAACGGCCCCGGTGA 62.127 55.000 7.66 0.00 44.69 4.02
556 904 2.512974 CATAACGGCCCCGGTGAC 60.513 66.667 7.66 0.00 44.69 3.67
575 923 3.715628 ACGGTTCTACGTGTTAGTTGT 57.284 42.857 0.00 0.00 46.64 3.32
584 932 2.691526 ACGTGTTAGTTGTGAGTCAGGA 59.308 45.455 0.00 0.00 0.00 3.86
590 938 7.480810 GTGTTAGTTGTGAGTCAGGAATTTTT 58.519 34.615 0.00 0.00 0.00 1.94
595 943 8.519799 AGTTGTGAGTCAGGAATTTTTAAAGA 57.480 30.769 0.00 0.00 0.00 2.52
597 945 7.873719 TGTGAGTCAGGAATTTTTAAAGACA 57.126 32.000 0.00 0.00 0.00 3.41
599 947 7.139392 GTGAGTCAGGAATTTTTAAAGACACC 58.861 38.462 0.00 1.23 0.00 4.16
600 948 6.831353 TGAGTCAGGAATTTTTAAAGACACCA 59.169 34.615 0.00 0.00 0.00 4.17
601 949 7.039313 AGTCAGGAATTTTTAAAGACACCAC 57.961 36.000 0.00 0.00 0.00 4.16
602 950 6.833933 AGTCAGGAATTTTTAAAGACACCACT 59.166 34.615 0.00 0.07 0.00 4.00
603 951 6.918022 GTCAGGAATTTTTAAAGACACCACTG 59.082 38.462 0.00 0.00 0.00 3.66
606 962 8.143835 CAGGAATTTTTAAAGACACCACTGATT 58.856 33.333 0.00 0.00 0.00 2.57
657 1014 3.367992 TTTAGTGCATTTGCCACACAG 57.632 42.857 0.00 0.00 41.18 3.66
659 1016 0.956633 AGTGCATTTGCCACACAGAG 59.043 50.000 0.00 0.00 41.18 3.35
660 1017 0.953727 GTGCATTTGCCACACAGAGA 59.046 50.000 0.00 0.00 41.18 3.10
662 1019 0.953727 GCATTTGCCACACAGAGACA 59.046 50.000 0.00 0.00 34.31 3.41
663 1020 1.337703 GCATTTGCCACACAGAGACAA 59.662 47.619 0.00 0.00 34.31 3.18
818 1188 2.797278 ATCATCCTCGGGCGGTCAC 61.797 63.158 0.00 0.00 0.00 3.67
1176 1555 2.745884 CCGCAATGCTTCCGGTCA 60.746 61.111 2.94 0.00 37.36 4.02
1227 1606 1.077930 TAGGCTACGCGGAGAGTGT 60.078 57.895 25.84 4.85 43.07 3.55
1244 1623 1.155424 TGTGTCCGCTTCCGTTTCAC 61.155 55.000 0.00 0.00 0.00 3.18
1255 1634 4.025401 GTTTCACGGCGCCTGTGG 62.025 66.667 34.57 20.80 37.91 4.17
1270 1649 0.038618 TGTGGTCGTCAGATCAACCG 60.039 55.000 0.00 0.00 39.54 4.44
1279 1658 1.136305 TCAGATCAACCGACCGAATCC 59.864 52.381 0.00 0.00 0.00 3.01
1298 1677 3.490759 CTGCTTTGATCGGCGCGT 61.491 61.111 8.43 0.00 0.00 6.01
1303 1682 0.504384 CTTTGATCGGCGCGTATGAG 59.496 55.000 8.43 0.00 0.00 2.90
1304 1683 0.101579 TTTGATCGGCGCGTATGAGA 59.898 50.000 8.43 0.45 0.00 3.27
1308 1687 1.591158 GATCGGCGCGTATGAGAAAAA 59.409 47.619 8.43 0.00 0.00 1.94
1309 1688 0.996462 TCGGCGCGTATGAGAAAAAG 59.004 50.000 8.43 0.00 0.00 2.27
1365 1753 0.179468 TGGGAACGGGCTATTGCTAC 59.821 55.000 0.00 0.00 39.59 3.58
1370 1758 1.598130 CGGGCTATTGCTACCCTGC 60.598 63.158 0.00 0.00 41.86 4.85
1399 1787 5.569059 GTGTTTGATTCGGCTCAATGTTAAG 59.431 40.000 2.16 0.00 35.20 1.85
1409 1797 1.277842 TCAATGTTAAGGAGCTCGCCA 59.722 47.619 7.83 0.00 0.00 5.69
1411 1799 2.684881 CAATGTTAAGGAGCTCGCCATT 59.315 45.455 7.83 8.14 0.00 3.16
1412 1800 1.737838 TGTTAAGGAGCTCGCCATTG 58.262 50.000 7.83 0.00 0.00 2.82
1413 1801 0.378610 GTTAAGGAGCTCGCCATTGC 59.621 55.000 7.83 0.00 0.00 3.56
1446 1834 0.170561 AGTGAAGCTACGTGCGTAGG 59.829 55.000 26.37 12.92 45.87 3.18
1447 1835 1.153901 TGAAGCTACGTGCGTAGGC 60.154 57.895 26.37 19.73 45.87 3.93
1448 1836 1.139095 GAAGCTACGTGCGTAGGCT 59.861 57.895 26.37 21.16 45.87 4.58
1449 1837 0.458025 GAAGCTACGTGCGTAGGCTT 60.458 55.000 26.37 25.92 45.87 4.35
1450 1838 0.037605 AAGCTACGTGCGTAGGCTTT 60.038 50.000 26.37 14.41 45.87 3.51
1451 1839 0.813184 AGCTACGTGCGTAGGCTTTA 59.187 50.000 26.37 0.00 45.87 1.85
1455 1845 4.456911 AGCTACGTGCGTAGGCTTTATATA 59.543 41.667 26.37 0.00 45.87 0.86
1463 1853 4.556523 GCGTAGGCTTTATATACGTGCTAC 59.443 45.833 0.00 0.00 43.13 3.58
1470 1860 6.084925 GCTTTATATACGTGCTACTCATCGT 58.915 40.000 0.00 0.00 36.74 3.73
1492 1882 6.863645 TCGTGAGAAGTTACATTTCTCTGAAG 59.136 38.462 13.15 5.10 46.78 3.02
1884 2274 2.354906 GCTGCTGATAGATCCCCATCTG 60.355 54.545 0.00 0.00 39.90 2.90
2175 2567 7.332430 CAGGATGATAAAGTGGTAACGTGTTAA 59.668 37.037 0.00 0.00 39.69 2.01
2193 2585 7.608761 ACGTGTTAATTCAGATAGCCCTTTTTA 59.391 33.333 0.00 0.00 0.00 1.52
2309 2701 6.582295 CAGTTATTCATTTTCTTGGTTCCACG 59.418 38.462 0.00 0.00 0.00 4.94
2333 2725 5.353123 GTGTATCCTCGGCAATACAAGAAAA 59.647 40.000 6.35 0.00 39.40 2.29
2359 2751 0.581529 CTTTCACGCGTTCTCTGCAA 59.418 50.000 10.22 0.00 0.00 4.08
2366 2758 1.971962 CGCGTTCTCTGCAATTTTCAC 59.028 47.619 0.00 0.00 0.00 3.18
2400 2792 3.069079 ACATTCAGTTGCATCAGCTCT 57.931 42.857 0.00 0.00 42.74 4.09
2471 2869 3.004734 GGGGTCAATATTTCAGGAATGCG 59.995 47.826 0.00 0.00 0.00 4.73
2525 2923 2.037772 CCGACTCTATCCTGAATTGGGG 59.962 54.545 0.00 0.00 0.00 4.96
2644 3042 2.417339 TCGGTGCGTATTCAGCTATC 57.583 50.000 0.00 0.00 35.28 2.08
2759 3158 5.927115 GCTCTTATTTATTACTCCCTCCGTG 59.073 44.000 0.00 0.00 0.00 4.94
2828 3232 9.132923 TCTTATACTTTGGTACAGATGGAGTAG 57.867 37.037 0.00 0.00 42.39 2.57
3529 4011 4.072131 CACAAGGTGTGGTTGCTATTACT 58.928 43.478 0.25 0.00 44.27 2.24
3578 4060 4.079253 AGAATCAAGCACGGGTTTAACAT 58.921 39.130 0.00 0.00 0.00 2.71
3940 4422 8.686334 TCTTGCCTGGTGAGATTATTAAATTTC 58.314 33.333 0.00 0.00 0.00 2.17
3994 4476 2.584835 AGGCCAAGTTATTGCAGTCA 57.415 45.000 5.01 0.00 34.91 3.41
4139 4621 6.713450 TGGTTCAACTGTTAGGATAAAAGGAC 59.287 38.462 0.00 0.00 0.00 3.85
4222 4704 5.170021 GCCAATGTTGATAACAGCAATTCA 58.830 37.500 0.00 0.00 45.95 2.57
4250 4732 2.251818 CTAGCCAGCCTGAGCCTATTA 58.748 52.381 0.00 0.00 41.25 0.98
4273 4755 3.466836 TGATGAACTGAACACCACTGAC 58.533 45.455 0.00 0.00 0.00 3.51
4413 4895 2.542907 GCCCGCATGATGGTTACCG 61.543 63.158 0.00 0.00 0.00 4.02
4576 5058 2.749621 CAAGGTGGTTAATGAGCCAGAC 59.250 50.000 0.00 0.00 35.14 3.51
4606 5088 6.758416 TGTCTGTGCATAATGATAAGACTGAC 59.242 38.462 0.00 0.00 34.91 3.51
4638 5120 4.403752 TCAGAGTGATGGTAAGACTGATGG 59.596 45.833 0.00 0.00 0.00 3.51
4640 5122 5.070180 CAGAGTGATGGTAAGACTGATGGAT 59.930 44.000 0.00 0.00 0.00 3.41
4677 5159 5.468592 TCAAACATTTGAATCGGTGGATTG 58.531 37.500 4.56 0.00 43.62 2.67
4690 5172 3.366273 CGGTGGATTGTCAACCAAATCAG 60.366 47.826 4.51 0.00 37.94 2.90
4777 5259 4.764823 ACATTAAGGTCTTTTGGCGAATCA 59.235 37.500 0.00 0.00 0.00 2.57
4861 5343 3.735591 TGTTACTGCCACCTGAACTTAC 58.264 45.455 0.00 0.00 0.00 2.34
4889 5371 7.149192 GCAACACATCACTGTTATTTTCGTAAC 60.149 37.037 0.00 0.00 32.90 2.50
5015 5497 7.040686 AGTGGTGGATTCATTTTTACAGTACAC 60.041 37.037 0.00 0.00 0.00 2.90
5044 5526 6.444704 TCTATAAATCCCCTGTTGAGTCTCT 58.555 40.000 0.65 0.00 0.00 3.10
5556 6124 3.609853 TGGCTGTAAATAAGTGGAGCTG 58.390 45.455 0.00 0.00 0.00 4.24
5712 6288 6.560253 AAGTGTTACATTGTTCATCAGTCC 57.440 37.500 0.00 0.00 0.00 3.85
5743 6325 4.888326 TCCATTGCACTGGCTTATTTTT 57.112 36.364 17.94 0.00 41.91 1.94
5888 6770 9.344772 TGGAACAAAATTAAGAAACTAGTGCTA 57.655 29.630 0.00 0.00 31.92 3.49
5901 6783 2.787473 AGTGCTAGCAGGCATTACAA 57.213 45.000 20.03 0.00 44.34 2.41
5930 6812 5.437289 TGTTCTGTAAACATTGAGCTTGG 57.563 39.130 0.00 0.00 0.00 3.61
5935 6825 4.203226 TGTAAACATTGAGCTTGGACACA 58.797 39.130 0.00 0.00 0.00 3.72
5949 6839 2.241941 TGGACACATATGGCAAGATGGT 59.758 45.455 7.80 10.47 34.30 3.55
6018 6911 1.808945 CACTTCTCATCCAAGCCACAC 59.191 52.381 0.00 0.00 0.00 3.82
6090 6992 4.578928 CCGGGATTACAAAAACTGGGATAG 59.421 45.833 0.00 0.00 0.00 2.08
6099 7001 7.728847 ACAAAAACTGGGATAGCAAAAATTC 57.271 32.000 0.00 0.00 0.00 2.17
6104 7006 4.399303 ACTGGGATAGCAAAAATTCGAAGG 59.601 41.667 3.35 0.00 0.00 3.46
6192 7094 3.119884 CCAAAAGTTGATACGATGCTGCA 60.120 43.478 4.13 4.13 0.00 4.41
6242 7144 2.822255 GCTCCCGCGTATGCCAAA 60.822 61.111 4.92 0.00 38.08 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.403878 ACAGGTAAATCACAAGCTAACGTAT 58.596 36.000 0.00 0.00 0.00 3.06
1 2 5.786311 ACAGGTAAATCACAAGCTAACGTA 58.214 37.500 0.00 0.00 0.00 3.57
2 3 4.638304 ACAGGTAAATCACAAGCTAACGT 58.362 39.130 0.00 0.00 0.00 3.99
3 4 4.688879 TGACAGGTAAATCACAAGCTAACG 59.311 41.667 0.00 0.00 0.00 3.18
98 103 3.119708 GGCAGTGGCTAAGAATTGTTGAG 60.120 47.826 9.90 0.00 40.87 3.02
103 108 2.095059 GTGTGGCAGTGGCTAAGAATTG 60.095 50.000 18.53 0.00 40.87 2.32
105 110 1.614317 GGTGTGGCAGTGGCTAAGAAT 60.614 52.381 18.53 0.00 40.87 2.40
106 111 0.250727 GGTGTGGCAGTGGCTAAGAA 60.251 55.000 18.53 0.00 40.87 2.52
107 112 1.374947 GGTGTGGCAGTGGCTAAGA 59.625 57.895 18.53 0.00 40.87 2.10
108 113 1.073025 TGGTGTGGCAGTGGCTAAG 59.927 57.895 18.53 0.00 40.87 2.18
110 115 2.429930 GTGGTGTGGCAGTGGCTA 59.570 61.111 18.53 4.16 40.87 3.93
130 463 1.745087 CTCCCGACAACATGGATTTGG 59.255 52.381 0.00 0.00 0.00 3.28
142 475 2.038975 CCCCTCCTTCTCCCGACA 59.961 66.667 0.00 0.00 0.00 4.35
191 524 5.823353 ACGACGTTGTGTGGATTTAAATTT 58.177 33.333 7.89 0.00 0.00 1.82
192 525 5.427036 ACGACGTTGTGTGGATTTAAATT 57.573 34.783 7.89 0.00 0.00 1.82
193 526 5.927689 TCTACGACGTTGTGTGGATTTAAAT 59.072 36.000 18.98 0.00 0.00 1.40
195 528 4.869215 TCTACGACGTTGTGTGGATTTAA 58.131 39.130 18.98 0.00 0.00 1.52
196 529 4.216042 TCTCTACGACGTTGTGTGGATTTA 59.784 41.667 18.98 0.00 0.00 1.40
202 535 3.305964 ACAATCTCTACGACGTTGTGTG 58.694 45.455 18.98 11.03 32.30 3.82
203 536 3.637998 ACAATCTCTACGACGTTGTGT 57.362 42.857 18.98 6.49 32.30 3.72
211 544 4.565022 TGCAATGACAACAATCTCTACGA 58.435 39.130 0.00 0.00 0.00 3.43
214 547 4.142838 CGCTTGCAATGACAACAATCTCTA 60.143 41.667 0.00 0.00 0.00 2.43
223 556 0.804364 CTAGGCGCTTGCAATGACAA 59.196 50.000 7.64 0.00 41.71 3.18
241 574 3.066900 CCGGATCAAACTATCTCACGACT 59.933 47.826 0.00 0.00 0.00 4.18
245 578 2.128035 CGCCGGATCAAACTATCTCAC 58.872 52.381 5.05 0.00 0.00 3.51
251 584 0.107897 ACATGCGCCGGATCAAACTA 60.108 50.000 5.05 0.00 0.00 2.24
254 587 2.460275 CGACATGCGCCGGATCAAA 61.460 57.895 5.05 0.00 0.00 2.69
279 612 3.787001 CCGGCCCTCTTCCCTGAC 61.787 72.222 0.00 0.00 0.00 3.51
286 619 3.330720 CTCAACCCCGGCCCTCTT 61.331 66.667 0.00 0.00 0.00 2.85
288 621 3.787001 CTCTCAACCCCGGCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
291 624 2.211468 ATTTCCTCTCAACCCCGGCC 62.211 60.000 0.00 0.00 0.00 6.13
292 625 1.032114 CATTTCCTCTCAACCCCGGC 61.032 60.000 0.00 0.00 0.00 6.13
293 626 0.394352 CCATTTCCTCTCAACCCCGG 60.394 60.000 0.00 0.00 0.00 5.73
294 627 0.394352 CCCATTTCCTCTCAACCCCG 60.394 60.000 0.00 0.00 0.00 5.73
316 649 9.830975 AGTTTTACACTTTCAAAAATATTGCCT 57.169 25.926 0.00 0.00 27.32 4.75
334 667 7.883391 TTCATAACCCTTGTTCAGTTTTACA 57.117 32.000 0.00 0.00 35.87 2.41
335 668 8.573035 TGATTCATAACCCTTGTTCAGTTTTAC 58.427 33.333 0.00 0.00 35.87 2.01
343 676 6.261826 CCTCTCATGATTCATAACCCTTGTTC 59.738 42.308 0.00 0.00 35.87 3.18
384 729 1.605202 GCGATGATCTCTGAAGGCCTC 60.605 57.143 5.23 0.00 0.00 4.70
387 732 0.392336 AGGCGATGATCTCTGAAGGC 59.608 55.000 0.00 0.00 0.00 4.35
432 777 7.869016 TTATTTATAGAGGATTCGTCTTGCG 57.131 36.000 13.62 0.00 43.01 4.85
467 812 4.554723 CGGTTCGAAAAAGATTGTTCAGCT 60.555 41.667 0.00 0.00 0.00 4.24
468 813 3.664025 CGGTTCGAAAAAGATTGTTCAGC 59.336 43.478 0.00 0.00 0.00 4.26
469 814 4.670621 CACGGTTCGAAAAAGATTGTTCAG 59.329 41.667 0.00 0.00 0.00 3.02
504 851 6.063640 AGTGTCCGGTTACAAACAATTTAC 57.936 37.500 0.00 0.00 0.00 2.01
526 874 1.426041 CGTTATGTTTCCCCGCGGAG 61.426 60.000 30.73 15.76 40.10 4.63
529 877 3.095032 CCGTTATGTTTCCCCGCG 58.905 61.111 0.00 0.00 0.00 6.46
531 879 2.116533 GGGCCGTTATGTTTCCCCG 61.117 63.158 0.00 0.00 0.00 5.73
537 885 2.045731 CACCGGGGCCGTTATGTT 60.046 61.111 6.32 0.00 37.81 2.71
550 898 0.318107 AACACGTAGAACCGTCACCG 60.318 55.000 0.00 0.00 39.45 4.94
551 899 2.030805 ACTAACACGTAGAACCGTCACC 60.031 50.000 0.00 0.00 39.45 4.02
552 900 3.273919 ACTAACACGTAGAACCGTCAC 57.726 47.619 0.00 0.00 39.45 3.67
553 901 3.066621 ACAACTAACACGTAGAACCGTCA 59.933 43.478 0.00 0.00 39.45 4.35
554 902 3.423206 CACAACTAACACGTAGAACCGTC 59.577 47.826 0.00 0.00 39.45 4.79
555 903 3.066621 TCACAACTAACACGTAGAACCGT 59.933 43.478 0.00 0.00 42.87 4.83
556 904 3.631144 TCACAACTAACACGTAGAACCG 58.369 45.455 0.00 0.00 33.61 4.44
557 905 4.614946 ACTCACAACTAACACGTAGAACC 58.385 43.478 0.00 0.00 33.61 3.62
558 906 5.276270 TGACTCACAACTAACACGTAGAAC 58.724 41.667 0.00 0.00 33.61 3.01
564 912 3.364889 TCCTGACTCACAACTAACACG 57.635 47.619 0.00 0.00 0.00 4.49
575 923 6.831353 TGGTGTCTTTAAAAATTCCTGACTCA 59.169 34.615 0.00 0.00 0.00 3.41
584 932 9.665719 ACAAAATCAGTGGTGTCTTTAAAAATT 57.334 25.926 0.00 0.00 0.00 1.82
590 938 4.642437 TGCACAAAATCAGTGGTGTCTTTA 59.358 37.500 0.00 0.00 37.46 1.85
594 942 3.435105 TTGCACAAAATCAGTGGTGTC 57.565 42.857 0.00 0.00 37.46 3.67
595 943 3.883830 TTTGCACAAAATCAGTGGTGT 57.116 38.095 0.00 0.00 37.46 4.16
597 945 5.879223 TCAATTTTTGCACAAAATCAGTGGT 59.121 32.000 9.21 0.00 39.69 4.16
599 947 7.631822 TCATCAATTTTTGCACAAAATCAGTG 58.368 30.769 9.21 5.71 39.69 3.66
600 948 7.789273 TCATCAATTTTTGCACAAAATCAGT 57.211 28.000 9.21 0.00 39.69 3.41
601 949 8.286800 ACATCATCAATTTTTGCACAAAATCAG 58.713 29.630 9.21 12.43 39.69 2.90
602 950 8.155821 ACATCATCAATTTTTGCACAAAATCA 57.844 26.923 9.21 9.05 39.69 2.57
603 951 9.453325 AAACATCATCAATTTTTGCACAAAATC 57.547 25.926 9.21 0.00 39.69 2.17
606 962 9.932699 CTAAAACATCATCAATTTTTGCACAAA 57.067 25.926 0.00 0.00 0.00 2.83
638 995 2.553602 CTCTGTGTGGCAAATGCACTAA 59.446 45.455 7.80 0.00 44.36 2.24
663 1020 4.037923 CGTTCCCTATGGCATATGCTTTTT 59.962 41.667 26.12 11.56 41.70 1.94
818 1188 1.219393 GGAGGAGACCTTCTTGGCG 59.781 63.158 0.00 0.00 40.22 5.69
1227 1606 4.036977 GTGAAACGGAAGCGGACA 57.963 55.556 0.00 0.00 0.00 4.02
1251 1630 0.038618 CGGTTGATCTGACGACCACA 60.039 55.000 13.52 0.00 42.68 4.17
1270 1649 2.386661 TCAAAGCAGAGGATTCGGTC 57.613 50.000 0.00 0.00 0.00 4.79
1279 1658 2.705826 GCGCCGATCAAAGCAGAG 59.294 61.111 0.00 0.00 0.00 3.35
1303 1682 8.706936 GCCTGAATTTTGATCTTCTTCTTTTTC 58.293 33.333 0.00 0.00 0.00 2.29
1304 1683 8.206189 TGCCTGAATTTTGATCTTCTTCTTTTT 58.794 29.630 0.00 0.00 0.00 1.94
1308 1687 7.321153 CAATGCCTGAATTTTGATCTTCTTCT 58.679 34.615 0.00 0.00 0.00 2.85
1309 1688 6.534079 CCAATGCCTGAATTTTGATCTTCTTC 59.466 38.462 0.00 0.00 0.00 2.87
1365 1753 1.815003 GAATCAAACACTGAGGCAGGG 59.185 52.381 0.00 0.00 41.28 4.45
1370 1758 1.734465 GAGCCGAATCAAACACTGAGG 59.266 52.381 0.00 0.00 37.52 3.86
1409 1797 0.391661 CTACAGTCCAGCACCGCAAT 60.392 55.000 0.00 0.00 0.00 3.56
1411 1799 2.207229 ACTACAGTCCAGCACCGCA 61.207 57.895 0.00 0.00 0.00 5.69
1412 1800 1.738099 CACTACAGTCCAGCACCGC 60.738 63.158 0.00 0.00 0.00 5.68
1413 1801 0.317160 TTCACTACAGTCCAGCACCG 59.683 55.000 0.00 0.00 0.00 4.94
1415 1803 1.001406 AGCTTCACTACAGTCCAGCAC 59.999 52.381 10.51 0.00 34.25 4.40
1442 1830 6.906659 TGAGTAGCACGTATATAAAGCCTAC 58.093 40.000 0.00 0.00 0.00 3.18
1445 1833 5.512082 CGATGAGTAGCACGTATATAAAGCC 59.488 44.000 0.00 0.00 0.00 4.35
1446 1834 6.032565 CACGATGAGTAGCACGTATATAAAGC 59.967 42.308 0.00 0.00 34.25 3.51
1447 1835 7.295930 TCACGATGAGTAGCACGTATATAAAG 58.704 38.462 0.00 0.00 34.25 1.85
1448 1836 7.172019 TCTCACGATGAGTAGCACGTATATAAA 59.828 37.037 12.62 0.00 44.58 1.40
1449 1837 6.647895 TCTCACGATGAGTAGCACGTATATAA 59.352 38.462 12.62 0.00 44.58 0.98
1450 1838 6.161381 TCTCACGATGAGTAGCACGTATATA 58.839 40.000 12.62 0.00 44.58 0.86
1451 1839 4.995487 TCTCACGATGAGTAGCACGTATAT 59.005 41.667 12.62 0.00 44.58 0.86
1455 1845 1.450025 TCTCACGATGAGTAGCACGT 58.550 50.000 12.62 0.00 44.58 4.49
1463 1853 7.009083 CAGAGAAATGTAACTTCTCACGATGAG 59.991 40.741 13.45 8.24 45.59 2.90
1470 1860 9.429359 GAATCTTCAGAGAAATGTAACTTCTCA 57.571 33.333 13.45 0.00 42.60 3.27
1884 2274 1.726853 CACCGTCTTCATCCTTGGAC 58.273 55.000 0.00 0.00 0.00 4.02
2065 2456 9.395707 GACAGATCATCATCAATTTTTATCAGC 57.604 33.333 0.00 0.00 0.00 4.26
2201 2593 1.317613 GTGAGACATGGTTGTTGGCA 58.682 50.000 0.00 0.00 35.79 4.92
2276 2668 7.754027 CCAAGAAAATGAATAACTGCTGAGAAG 59.246 37.037 0.00 0.00 0.00 2.85
2309 2701 4.054780 TCTTGTATTGCCGAGGATACAC 57.945 45.455 3.91 0.00 38.18 2.90
2333 2725 5.175856 GCAGAGAACGCGTGAAAGATATATT 59.824 40.000 14.98 0.00 0.00 1.28
2366 2758 6.237384 GCAACTGAATGTTTTCATGCTATTCG 60.237 38.462 6.92 0.00 41.47 3.34
2471 2869 5.003804 TGGTTCAGCATTTTCTCTAGTTCC 58.996 41.667 0.00 0.00 0.00 3.62
2644 3042 0.940126 GGCCATATGAGAAGTGCACG 59.060 55.000 12.01 0.00 0.00 5.34
2806 3210 9.435570 AATACTACTCCATCTGTACCAAAGTAT 57.564 33.333 0.00 0.00 0.00 2.12
2818 3222 7.158021 GCTCAGCATTAAATACTACTCCATCT 58.842 38.462 0.00 0.00 0.00 2.90
2821 3225 5.130311 TGGCTCAGCATTAAATACTACTCCA 59.870 40.000 0.00 0.00 0.00 3.86
2828 3232 7.975616 TGAAAAGAATGGCTCAGCATTAAATAC 59.024 33.333 0.00 0.00 0.00 1.89
3529 4011 5.423290 TGCAGGACTGAGAGAATAGAAATCA 59.577 40.000 3.00 0.00 0.00 2.57
3578 4060 0.833287 GCTGATGCCTCCCTTACAGA 59.167 55.000 0.00 0.00 0.00 3.41
3601 4083 6.146837 CCACACTAGCAAGCAAGTGATATATC 59.853 42.308 5.73 5.73 44.79 1.63
4139 4621 3.439129 ACGCTTCTTCTTAAAAATCCCCG 59.561 43.478 0.00 0.00 0.00 5.73
4222 4704 1.699634 TCAGGCTGGCTAGTTGAAGTT 59.300 47.619 15.73 0.00 0.00 2.66
4250 4732 4.516698 GTCAGTGGTGTTCAGTTCATCAAT 59.483 41.667 0.00 0.00 0.00 2.57
4273 4755 9.778993 CTGTTTATCAATTTGACAGGAACTATG 57.221 33.333 0.15 0.00 36.02 2.23
4413 4895 7.435068 TCTCTAATTTTGGCAGAAGTTGTAC 57.565 36.000 0.00 0.00 0.00 2.90
4606 5088 1.404717 CCATCACTCTGACAGGGTTCG 60.405 57.143 4.85 0.00 0.00 3.95
4638 5120 8.804743 CAAATGTTTGATCTGTAATTGCTGATC 58.195 33.333 25.98 25.98 40.55 2.92
4640 5122 7.884257 TCAAATGTTTGATCTGTAATTGCTGA 58.116 30.769 5.64 5.64 41.88 4.26
4677 5159 3.065925 GCTATGCTCCTGATTTGGTTGAC 59.934 47.826 0.00 0.00 0.00 3.18
4690 5172 3.677121 CGTCAGAACATATGCTATGCTCC 59.323 47.826 1.58 0.00 0.00 4.70
4777 5259 8.133024 TGCTTACCTGAATATTTTCAACCATT 57.867 30.769 0.20 0.00 41.22 3.16
4861 5343 5.340403 CGAAAATAACAGTGATGTGTTGCAG 59.660 40.000 0.00 0.00 40.89 4.41
4889 5371 9.444534 GTATGAGCTATATATGTCATTGACTCG 57.555 37.037 17.26 0.00 33.15 4.18
4990 5472 7.040686 AGTGTACTGTAAAAATGAATCCACCAC 60.041 37.037 0.00 0.00 0.00 4.16
5015 5497 7.512992 ACTCAACAGGGGATTTATAGATGAAG 58.487 38.462 0.00 0.00 0.00 3.02
5023 5505 7.698163 ATAAGAGACTCAACAGGGGATTTAT 57.302 36.000 5.02 0.00 0.00 1.40
5126 5692 8.773645 CACATTAGAAACAGATGAACACACTTA 58.226 33.333 0.00 0.00 0.00 2.24
5127 5693 7.642669 CACATTAGAAACAGATGAACACACTT 58.357 34.615 0.00 0.00 0.00 3.16
5128 5694 6.293626 GCACATTAGAAACAGATGAACACACT 60.294 38.462 0.00 0.00 0.00 3.55
5402 5969 4.065321 AGATGTATTCTGCACCACTAGC 57.935 45.455 0.00 0.00 31.79 3.42
5438 6005 9.613428 TTTTTATCAGGTTACTGGATCATGTAG 57.387 33.333 0.00 0.00 44.99 2.74
5556 6124 5.686397 GCTGAGCAATAGAGAAAATCATTGC 59.314 40.000 0.00 9.51 44.29 3.56
5578 6146 0.964700 GAGCAGGCCAAAGAAAAGCT 59.035 50.000 5.01 0.17 0.00 3.74
5624 6192 0.039618 ATGGAAAAGGACACCGGCAT 59.960 50.000 0.00 0.00 0.00 4.40
5627 6195 2.235016 TGAAATGGAAAAGGACACCGG 58.765 47.619 0.00 0.00 0.00 5.28
5689 6257 6.061441 TGGACTGATGAACAATGTAACACTT 58.939 36.000 0.00 0.00 0.00 3.16
5690 6258 5.620206 TGGACTGATGAACAATGTAACACT 58.380 37.500 0.00 0.00 0.00 3.55
5707 6283 3.624861 GCAATGGATAGACAACTGGACTG 59.375 47.826 0.00 0.00 0.00 3.51
5712 6288 3.376234 CCAGTGCAATGGATAGACAACTG 59.624 47.826 28.87 6.24 43.57 3.16
5795 6677 4.728860 AGTTCCCCCAAGAATCAGATACAT 59.271 41.667 0.00 0.00 0.00 2.29
5798 6680 6.209774 TCTTAGTTCCCCCAAGAATCAGATA 58.790 40.000 0.00 0.00 0.00 1.98
5901 6783 6.403866 TCAATGTTTACAGAACAAATGGCT 57.596 33.333 0.00 0.00 33.42 4.75
5915 6797 6.095300 CCATATGTGTCCAAGCTCAATGTTTA 59.905 38.462 1.24 0.00 0.00 2.01
5917 6799 4.400251 CCATATGTGTCCAAGCTCAATGTT 59.600 41.667 1.24 0.00 0.00 2.71
5921 6803 2.290832 TGCCATATGTGTCCAAGCTCAA 60.291 45.455 1.24 0.00 0.00 3.02
5930 6812 4.398988 TCAAACCATCTTGCCATATGTGTC 59.601 41.667 1.24 0.00 0.00 3.67
5935 6825 9.768662 GATTTAAATCAAACCATCTTGCCATAT 57.231 29.630 20.89 0.00 35.49 1.78
6090 6992 3.004315 TGACTGGTCCTTCGAATTTTTGC 59.996 43.478 0.00 0.00 0.00 3.68
6099 7001 0.608130 TGTCCATGACTGGTCCTTCG 59.392 55.000 0.00 0.00 43.61 3.79
6104 7006 0.674895 GGCACTGTCCATGACTGGTC 60.675 60.000 0.00 0.00 43.61 4.02
6242 7144 3.586618 AGCTTGGAGAGGAAGAAGATTGT 59.413 43.478 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.