Multiple sequence alignment - TraesCS7D01G475100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G475100 chr7D 100.000 3520 0 0 1 3520 587121736 587118217 0.000000e+00 6501.0
1 TraesCS7D01G475100 chr7A 88.828 3115 247 61 461 3520 678971568 678968500 0.000000e+00 3731.0
2 TraesCS7D01G475100 chr7A 95.299 468 13 4 1 459 466206481 466206948 0.000000e+00 734.0
3 TraesCS7D01G475100 chr7B 88.958 2880 209 46 471 3311 658221845 658219036 0.000000e+00 3456.0
4 TraesCS7D01G475100 chr3A 95.975 472 11 3 1 464 476660352 476659881 0.000000e+00 760.0
5 TraesCS7D01G475100 chr3A 94.048 84 4 1 1518 1601 411271672 411271590 3.690000e-25 126.0
6 TraesCS7D01G475100 chr3A 91.837 49 3 1 1518 1566 193870948 193870901 2.270000e-07 67.6
7 TraesCS7D01G475100 chr5D 97.105 449 12 1 1 448 254524272 254524720 0.000000e+00 756.0
8 TraesCS7D01G475100 chr5D 96.460 452 12 2 1 448 422940344 422940795 0.000000e+00 743.0
9 TraesCS7D01G475100 chr5D 88.442 199 21 1 1003 1201 30555570 30555766 4.540000e-59 239.0
10 TraesCS7D01G475100 chr5D 88.384 198 21 1 1004 1201 525777385 525777580 1.630000e-58 237.0
11 TraesCS7D01G475100 chr1D 96.121 464 13 2 1 459 328878670 328879133 0.000000e+00 752.0
12 TraesCS7D01G475100 chr1D 94.937 474 13 4 1 464 225406876 225406404 0.000000e+00 732.0
13 TraesCS7D01G475100 chr1D 84.024 338 41 12 1003 1340 11316755 11317079 2.640000e-81 313.0
14 TraesCS7D01G475100 chr1D 92.857 84 5 1 1518 1601 493747510 493747592 1.720000e-23 121.0
15 TraesCS7D01G475100 chr3D 96.095 461 14 3 1 457 604873421 604873881 0.000000e+00 749.0
16 TraesCS7D01G475100 chr3D 95.699 465 14 3 1 459 401681891 401682355 0.000000e+00 743.0
17 TraesCS7D01G475100 chr3D 92.857 84 4 2 1518 1601 168502726 168502807 1.720000e-23 121.0
18 TraesCS7D01G475100 chr6D 96.460 452 12 2 1 448 379009375 379008924 0.000000e+00 743.0
19 TraesCS7D01G475100 chr6D 90.171 234 21 1 1003 1234 121093273 121093040 1.590000e-78 303.0
20 TraesCS7D01G475100 chr6B 85.284 564 52 8 1671 2226 720405712 720406252 1.430000e-153 553.0
21 TraesCS7D01G475100 chr6B 91.880 234 17 1 1003 1234 213157494 213157261 3.390000e-85 326.0
22 TraesCS7D01G475100 chr2D 87.940 199 22 1 1003 1201 561922250 561922446 2.110000e-57 233.0
23 TraesCS7D01G475100 chr2D 92.391 92 6 1 1518 1609 13209438 13209528 2.850000e-26 130.0
24 TraesCS7D01G475100 chr4D 87.437 199 23 1 1003 1201 287300413 287300217 9.830000e-56 228.0
25 TraesCS7D01G475100 chr5B 92.000 50 2 2 1518 1566 397292442 397292394 6.300000e-08 69.4
26 TraesCS7D01G475100 chr5A 91.837 49 3 1 1518 1566 510198936 510198983 2.270000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G475100 chr7D 587118217 587121736 3519 True 6501 6501 100.000 1 3520 1 chr7D.!!$R1 3519
1 TraesCS7D01G475100 chr7A 678968500 678971568 3068 True 3731 3731 88.828 461 3520 1 chr7A.!!$R1 3059
2 TraesCS7D01G475100 chr7B 658219036 658221845 2809 True 3456 3456 88.958 471 3311 1 chr7B.!!$R1 2840
3 TraesCS7D01G475100 chr6B 720405712 720406252 540 False 553 553 85.284 1671 2226 1 chr6B.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.036294 GTGGTTAGTCTCTGGTGGGC 60.036 60.0 0.00 0.0 0.0 5.36 F
1216 1229 0.107945 CTGCCACTACCTGAAGCCTC 60.108 60.0 0.00 0.0 0.0 4.70 F
2070 2093 0.317160 CCTCGAGTTGCAGGTACACA 59.683 55.0 12.31 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1462 0.042708 GCATTCTGCGCGTACTGATG 60.043 55.0 8.43 6.65 31.71 3.07 R
2161 2186 0.868406 GGTCAGAAGCTTGGAACACG 59.132 55.0 2.10 0.00 39.29 4.49 R
3454 3524 0.302890 GCATCTCTGTGTGTATGCGC 59.697 55.0 0.00 0.00 35.81 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.879682 CGATGGCGCATGGTGGTG 61.880 66.667 10.83 0.00 0.00 4.17
28 29 3.520862 GATGGCGCATGGTGGTGG 61.521 66.667 10.83 0.00 0.00 4.61
51 52 4.459089 GGTCTGGCTGGTCGGCTC 62.459 72.222 1.58 0.00 39.32 4.70
52 53 4.459089 GTCTGGCTGGTCGGCTCC 62.459 72.222 1.58 0.00 39.32 4.70
74 75 4.733542 CGTTGGGCGGTGGGGATT 62.734 66.667 0.00 0.00 36.85 3.01
75 76 3.068064 GTTGGGCGGTGGGGATTG 61.068 66.667 0.00 0.00 0.00 2.67
76 77 4.374584 TTGGGCGGTGGGGATTGG 62.375 66.667 0.00 0.00 0.00 3.16
78 79 4.506255 GGGCGGTGGGGATTGGAG 62.506 72.222 0.00 0.00 0.00 3.86
79 80 3.728373 GGCGGTGGGGATTGGAGT 61.728 66.667 0.00 0.00 0.00 3.85
80 81 2.372074 GGCGGTGGGGATTGGAGTA 61.372 63.158 0.00 0.00 0.00 2.59
81 82 1.153229 GCGGTGGGGATTGGAGTAC 60.153 63.158 0.00 0.00 0.00 2.73
82 83 1.143183 CGGTGGGGATTGGAGTACG 59.857 63.158 0.00 0.00 0.00 3.67
83 84 1.525442 GGTGGGGATTGGAGTACGG 59.475 63.158 0.00 0.00 0.00 4.02
84 85 1.525442 GTGGGGATTGGAGTACGGG 59.475 63.158 0.00 0.00 0.00 5.28
85 86 0.979187 GTGGGGATTGGAGTACGGGA 60.979 60.000 0.00 0.00 0.00 5.14
86 87 0.689745 TGGGGATTGGAGTACGGGAG 60.690 60.000 0.00 0.00 0.00 4.30
87 88 0.398098 GGGGATTGGAGTACGGGAGA 60.398 60.000 0.00 0.00 0.00 3.71
88 89 1.492764 GGGATTGGAGTACGGGAGAA 58.507 55.000 0.00 0.00 0.00 2.87
89 90 1.835531 GGGATTGGAGTACGGGAGAAA 59.164 52.381 0.00 0.00 0.00 2.52
90 91 2.438392 GGGATTGGAGTACGGGAGAAAT 59.562 50.000 0.00 0.00 0.00 2.17
91 92 3.494573 GGGATTGGAGTACGGGAGAAATC 60.495 52.174 0.00 0.00 0.00 2.17
92 93 3.494573 GGATTGGAGTACGGGAGAAATCC 60.495 52.174 0.00 0.00 36.03 3.01
93 94 2.544844 TGGAGTACGGGAGAAATCCT 57.455 50.000 0.00 0.00 0.00 3.24
94 95 2.829023 TGGAGTACGGGAGAAATCCTT 58.171 47.619 0.00 0.00 0.00 3.36
95 96 2.500098 TGGAGTACGGGAGAAATCCTTG 59.500 50.000 0.00 0.00 0.00 3.61
96 97 2.552031 GAGTACGGGAGAAATCCTTGC 58.448 52.381 0.00 0.00 0.00 4.01
97 98 1.209747 AGTACGGGAGAAATCCTTGCC 59.790 52.381 0.00 0.00 0.00 4.52
98 99 3.813596 CGGGAGAAATCCTTGCCG 58.186 61.111 0.00 0.00 41.79 5.69
100 101 3.808984 GGGAGAAATCCTTGCCGAT 57.191 52.632 0.00 0.00 0.00 4.18
101 102 1.598882 GGGAGAAATCCTTGCCGATC 58.401 55.000 0.00 0.00 0.00 3.69
102 103 1.141858 GGGAGAAATCCTTGCCGATCT 59.858 52.381 0.00 0.00 0.00 2.75
103 104 2.422093 GGGAGAAATCCTTGCCGATCTT 60.422 50.000 0.00 0.00 0.00 2.40
104 105 2.875317 GGAGAAATCCTTGCCGATCTTC 59.125 50.000 0.00 0.00 0.00 2.87
105 106 2.541762 GAGAAATCCTTGCCGATCTTCG 59.458 50.000 0.00 0.00 40.07 3.79
125 126 4.082523 CCCGATGCGGTGACACCT 62.083 66.667 22.14 3.63 46.80 4.00
126 127 2.815211 CCGATGCGGTGACACCTG 60.815 66.667 22.14 15.93 42.73 4.00
127 128 3.490759 CGATGCGGTGACACCTGC 61.491 66.667 25.14 25.14 37.95 4.85
128 129 3.490759 GATGCGGTGACACCTGCG 61.491 66.667 25.66 14.81 39.47 5.18
141 142 3.443045 CTGCGGGTGCCACCATTC 61.443 66.667 17.22 4.27 41.02 2.67
143 144 4.740822 GCGGGTGCCACCATTCCT 62.741 66.667 17.22 0.00 41.02 3.36
144 145 2.035626 CGGGTGCCACCATTCCTT 59.964 61.111 17.22 0.00 41.02 3.36
145 146 2.046285 CGGGTGCCACCATTCCTTC 61.046 63.158 17.22 0.00 41.02 3.46
146 147 1.682344 GGGTGCCACCATTCCTTCC 60.682 63.158 17.22 0.00 41.02 3.46
147 148 1.384191 GGTGCCACCATTCCTTCCT 59.616 57.895 9.55 0.00 38.42 3.36
148 149 0.967380 GGTGCCACCATTCCTTCCTG 60.967 60.000 9.55 0.00 38.42 3.86
149 150 0.967380 GTGCCACCATTCCTTCCTGG 60.967 60.000 0.00 0.00 38.55 4.45
150 151 1.139498 TGCCACCATTCCTTCCTGGA 61.139 55.000 0.00 0.00 44.51 3.86
155 156 2.466724 ACCATTCCTTCCTGGAGGGTG 61.467 57.143 22.72 15.02 46.18 4.61
157 158 4.561155 TCCTTCCTGGAGGGTGTC 57.439 61.111 22.72 0.00 40.56 3.67
158 159 1.609501 TCCTTCCTGGAGGGTGTCG 60.610 63.158 22.72 0.00 40.56 4.35
159 160 2.660064 CCTTCCTGGAGGGTGTCGG 61.660 68.421 16.37 0.00 38.35 4.79
160 161 1.913762 CTTCCTGGAGGGTGTCGGT 60.914 63.158 0.00 0.00 36.25 4.69
161 162 2.172483 CTTCCTGGAGGGTGTCGGTG 62.172 65.000 0.00 0.00 36.25 4.94
162 163 2.603473 CCTGGAGGGTGTCGGTGA 60.603 66.667 0.00 0.00 0.00 4.02
163 164 1.990060 CCTGGAGGGTGTCGGTGAT 60.990 63.158 0.00 0.00 0.00 3.06
164 165 0.686441 CCTGGAGGGTGTCGGTGATA 60.686 60.000 0.00 0.00 0.00 2.15
165 166 1.414158 CTGGAGGGTGTCGGTGATAT 58.586 55.000 0.00 0.00 0.00 1.63
166 167 1.341531 CTGGAGGGTGTCGGTGATATC 59.658 57.143 0.00 0.00 0.00 1.63
167 168 0.680061 GGAGGGTGTCGGTGATATCC 59.320 60.000 0.00 0.00 0.00 2.59
168 169 1.410004 GAGGGTGTCGGTGATATCCA 58.590 55.000 0.00 0.00 0.00 3.41
169 170 1.971357 GAGGGTGTCGGTGATATCCAT 59.029 52.381 0.00 0.00 0.00 3.41
170 171 1.971357 AGGGTGTCGGTGATATCCATC 59.029 52.381 0.00 0.00 0.00 3.51
171 172 1.002087 GGGTGTCGGTGATATCCATCC 59.998 57.143 0.00 0.00 0.00 3.51
172 173 1.002087 GGTGTCGGTGATATCCATCCC 59.998 57.143 0.00 0.00 0.00 3.85
173 174 1.002087 GTGTCGGTGATATCCATCCCC 59.998 57.143 0.00 0.00 0.00 4.81
174 175 0.613777 GTCGGTGATATCCATCCCCC 59.386 60.000 0.00 0.00 0.00 5.40
175 176 0.192315 TCGGTGATATCCATCCCCCA 59.808 55.000 0.00 0.00 0.00 4.96
176 177 0.324943 CGGTGATATCCATCCCCCAC 59.675 60.000 0.00 0.00 0.00 4.61
177 178 0.698818 GGTGATATCCATCCCCCACC 59.301 60.000 0.00 0.00 37.50 4.61
178 179 1.747444 GTGATATCCATCCCCCACCT 58.253 55.000 0.00 0.00 0.00 4.00
179 180 1.630878 GTGATATCCATCCCCCACCTC 59.369 57.143 0.00 0.00 0.00 3.85
180 181 1.290134 GATATCCATCCCCCACCTCC 58.710 60.000 0.00 0.00 0.00 4.30
181 182 0.178831 ATATCCATCCCCCACCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
182 183 1.319522 TATCCATCCCCCACCTCCCT 61.320 60.000 0.00 0.00 0.00 4.20
183 184 2.644628 ATCCATCCCCCACCTCCCTC 62.645 65.000 0.00 0.00 0.00 4.30
184 185 2.774351 CATCCCCCACCTCCCTCC 60.774 72.222 0.00 0.00 0.00 4.30
185 186 4.499116 ATCCCCCACCTCCCTCCG 62.499 72.222 0.00 0.00 0.00 4.63
221 222 4.408821 GGACATGTCCGGGCAGCA 62.409 66.667 28.52 2.94 40.36 4.41
222 223 2.821366 GACATGTCCGGGCAGCAG 60.821 66.667 16.89 9.80 0.00 4.24
241 242 3.824510 GTCGTCGGCGTCGCTTTC 61.825 66.667 20.97 8.08 39.49 2.62
244 245 2.737376 GTCGGCGTCGCTTTCCTT 60.737 61.111 18.11 0.00 36.13 3.36
245 246 2.431942 TCGGCGTCGCTTTCCTTC 60.432 61.111 18.11 0.00 36.13 3.46
246 247 2.432628 CGGCGTCGCTTTCCTTCT 60.433 61.111 18.11 0.00 0.00 2.85
247 248 2.027625 CGGCGTCGCTTTCCTTCTT 61.028 57.895 18.11 0.00 0.00 2.52
248 249 1.497722 GGCGTCGCTTTCCTTCTTG 59.502 57.895 18.11 0.00 0.00 3.02
249 250 1.497722 GCGTCGCTTTCCTTCTTGG 59.502 57.895 10.68 0.00 37.10 3.61
250 251 0.949105 GCGTCGCTTTCCTTCTTGGA 60.949 55.000 10.68 0.00 44.51 3.53
258 259 2.854253 TCCTTCTTGGAGGTGCTGT 58.146 52.632 0.00 0.00 40.56 4.40
259 260 1.140312 TCCTTCTTGGAGGTGCTGTT 58.860 50.000 0.00 0.00 40.56 3.16
260 261 1.494721 TCCTTCTTGGAGGTGCTGTTT 59.505 47.619 0.00 0.00 40.56 2.83
261 262 2.091885 TCCTTCTTGGAGGTGCTGTTTT 60.092 45.455 0.00 0.00 40.56 2.43
262 263 2.035066 CCTTCTTGGAGGTGCTGTTTTG 59.965 50.000 0.00 0.00 38.35 2.44
263 264 2.435372 TCTTGGAGGTGCTGTTTTGT 57.565 45.000 0.00 0.00 0.00 2.83
264 265 3.569194 TCTTGGAGGTGCTGTTTTGTA 57.431 42.857 0.00 0.00 0.00 2.41
265 266 3.211045 TCTTGGAGGTGCTGTTTTGTAC 58.789 45.455 0.00 0.00 0.00 2.90
266 267 1.588674 TGGAGGTGCTGTTTTGTACG 58.411 50.000 0.00 0.00 0.00 3.67
267 268 0.237498 GGAGGTGCTGTTTTGTACGC 59.763 55.000 0.00 0.00 0.00 4.42
268 269 0.110823 GAGGTGCTGTTTTGTACGCG 60.111 55.000 3.53 3.53 0.00 6.01
269 270 1.082366 GGTGCTGTTTTGTACGCGG 60.082 57.895 12.47 0.00 0.00 6.46
270 271 1.644913 GTGCTGTTTTGTACGCGGT 59.355 52.632 12.47 0.00 0.00 5.68
271 272 0.656205 GTGCTGTTTTGTACGCGGTG 60.656 55.000 12.47 0.00 0.00 4.94
272 273 1.082366 GCTGTTTTGTACGCGGTGG 60.082 57.895 12.47 0.00 0.00 4.61
273 274 1.778027 GCTGTTTTGTACGCGGTGGT 61.778 55.000 12.47 0.00 0.00 4.16
274 275 0.658897 CTGTTTTGTACGCGGTGGTT 59.341 50.000 12.47 0.00 0.00 3.67
275 276 0.656785 TGTTTTGTACGCGGTGGTTC 59.343 50.000 12.47 0.00 0.00 3.62
276 277 0.383368 GTTTTGTACGCGGTGGTTCG 60.383 55.000 12.47 0.00 0.00 3.95
277 278 1.497223 TTTTGTACGCGGTGGTTCGG 61.497 55.000 12.47 0.00 0.00 4.30
278 279 2.360949 TTTGTACGCGGTGGTTCGGA 62.361 55.000 12.47 0.00 0.00 4.55
279 280 2.505557 GTACGCGGTGGTTCGGAG 60.506 66.667 12.47 0.00 0.00 4.63
280 281 4.424566 TACGCGGTGGTTCGGAGC 62.425 66.667 12.47 0.00 0.00 4.70
284 285 4.796231 CGGTGGTTCGGAGCCTCG 62.796 72.222 12.30 11.58 0.00 4.63
285 286 4.452733 GGTGGTTCGGAGCCTCGG 62.453 72.222 12.30 0.00 0.00 4.63
286 287 4.452733 GTGGTTCGGAGCCTCGGG 62.453 72.222 12.30 0.00 0.00 5.14
288 289 3.703127 GGTTCGGAGCCTCGGGTT 61.703 66.667 3.33 0.00 0.00 4.11
289 290 2.434359 GTTCGGAGCCTCGGGTTG 60.434 66.667 0.00 0.00 0.00 3.77
290 291 2.920912 TTCGGAGCCTCGGGTTGT 60.921 61.111 0.00 0.00 0.00 3.32
291 292 1.607178 TTCGGAGCCTCGGGTTGTA 60.607 57.895 0.00 0.00 0.00 2.41
292 293 1.601419 TTCGGAGCCTCGGGTTGTAG 61.601 60.000 0.00 0.00 0.00 2.74
293 294 2.348888 CGGAGCCTCGGGTTGTAGT 61.349 63.158 0.00 0.00 0.00 2.73
294 295 1.218316 GGAGCCTCGGGTTGTAGTG 59.782 63.158 0.00 0.00 0.00 2.74
295 296 1.218316 GAGCCTCGGGTTGTAGTGG 59.782 63.158 0.00 0.00 0.00 4.00
296 297 1.535687 AGCCTCGGGTTGTAGTGGT 60.536 57.895 0.00 0.00 0.00 4.16
297 298 1.125711 AGCCTCGGGTTGTAGTGGTT 61.126 55.000 0.00 0.00 0.00 3.67
298 299 0.609662 GCCTCGGGTTGTAGTGGTTA 59.390 55.000 0.00 0.00 0.00 2.85
299 300 1.405121 GCCTCGGGTTGTAGTGGTTAG 60.405 57.143 0.00 0.00 0.00 2.34
300 301 1.897802 CCTCGGGTTGTAGTGGTTAGT 59.102 52.381 0.00 0.00 0.00 2.24
301 302 2.094338 CCTCGGGTTGTAGTGGTTAGTC 60.094 54.545 0.00 0.00 0.00 2.59
302 303 2.824341 CTCGGGTTGTAGTGGTTAGTCT 59.176 50.000 0.00 0.00 0.00 3.24
303 304 2.821969 TCGGGTTGTAGTGGTTAGTCTC 59.178 50.000 0.00 0.00 0.00 3.36
304 305 2.824341 CGGGTTGTAGTGGTTAGTCTCT 59.176 50.000 0.00 0.00 0.00 3.10
305 306 3.367087 CGGGTTGTAGTGGTTAGTCTCTG 60.367 52.174 0.00 0.00 0.00 3.35
306 307 3.056035 GGGTTGTAGTGGTTAGTCTCTGG 60.056 52.174 0.00 0.00 0.00 3.86
307 308 3.577415 GGTTGTAGTGGTTAGTCTCTGGT 59.423 47.826 0.00 0.00 0.00 4.00
308 309 4.557205 GTTGTAGTGGTTAGTCTCTGGTG 58.443 47.826 0.00 0.00 0.00 4.17
309 310 3.162666 TGTAGTGGTTAGTCTCTGGTGG 58.837 50.000 0.00 0.00 0.00 4.61
310 311 1.645710 AGTGGTTAGTCTCTGGTGGG 58.354 55.000 0.00 0.00 0.00 4.61
311 312 0.036294 GTGGTTAGTCTCTGGTGGGC 60.036 60.000 0.00 0.00 0.00 5.36
312 313 1.218316 GGTTAGTCTCTGGTGGGCG 59.782 63.158 0.00 0.00 0.00 6.13
313 314 1.542187 GGTTAGTCTCTGGTGGGCGT 61.542 60.000 0.00 0.00 0.00 5.68
314 315 1.180029 GTTAGTCTCTGGTGGGCGTA 58.820 55.000 0.00 0.00 0.00 4.42
315 316 1.134560 GTTAGTCTCTGGTGGGCGTAG 59.865 57.143 0.00 0.00 0.00 3.51
342 343 4.400109 GTCACCGCGCTCTGTCGA 62.400 66.667 5.56 0.00 0.00 4.20
343 344 4.103103 TCACCGCGCTCTGTCGAG 62.103 66.667 5.56 0.00 40.35 4.04
351 352 2.259818 CTCTGTCGAGCTGCCGTT 59.740 61.111 0.00 0.00 0.00 4.44
352 353 2.049156 TCTGTCGAGCTGCCGTTG 60.049 61.111 0.00 3.44 0.00 4.10
353 354 2.356313 CTGTCGAGCTGCCGTTGT 60.356 61.111 0.00 0.00 0.00 3.32
354 355 1.956170 CTGTCGAGCTGCCGTTGTT 60.956 57.895 0.00 0.00 0.00 2.83
355 356 2.162921 CTGTCGAGCTGCCGTTGTTG 62.163 60.000 0.00 0.00 0.00 3.33
356 357 2.664851 TCGAGCTGCCGTTGTTGG 60.665 61.111 0.00 0.00 0.00 3.77
367 368 3.915437 CCGTTGTTGGCATTTACTTCT 57.085 42.857 0.00 0.00 0.00 2.85
368 369 4.237349 CCGTTGTTGGCATTTACTTCTT 57.763 40.909 0.00 0.00 0.00 2.52
369 370 4.226761 CCGTTGTTGGCATTTACTTCTTC 58.773 43.478 0.00 0.00 0.00 2.87
370 371 4.023193 CCGTTGTTGGCATTTACTTCTTCT 60.023 41.667 0.00 0.00 0.00 2.85
371 372 5.507315 CCGTTGTTGGCATTTACTTCTTCTT 60.507 40.000 0.00 0.00 0.00 2.52
372 373 5.977129 CGTTGTTGGCATTTACTTCTTCTTT 59.023 36.000 0.00 0.00 0.00 2.52
373 374 6.475402 CGTTGTTGGCATTTACTTCTTCTTTT 59.525 34.615 0.00 0.00 0.00 2.27
374 375 7.010091 CGTTGTTGGCATTTACTTCTTCTTTTT 59.990 33.333 0.00 0.00 0.00 1.94
375 376 8.328146 GTTGTTGGCATTTACTTCTTCTTTTTC 58.672 33.333 0.00 0.00 0.00 2.29
376 377 7.781056 TGTTGGCATTTACTTCTTCTTTTTCT 58.219 30.769 0.00 0.00 0.00 2.52
377 378 8.257306 TGTTGGCATTTACTTCTTCTTTTTCTT 58.743 29.630 0.00 0.00 0.00 2.52
378 379 9.098355 GTTGGCATTTACTTCTTCTTTTTCTTT 57.902 29.630 0.00 0.00 0.00 2.52
379 380 9.665719 TTGGCATTTACTTCTTCTTTTTCTTTT 57.334 25.926 0.00 0.00 0.00 2.27
380 381 9.097257 TGGCATTTACTTCTTCTTTTTCTTTTG 57.903 29.630 0.00 0.00 0.00 2.44
381 382 8.551205 GGCATTTACTTCTTCTTTTTCTTTTGG 58.449 33.333 0.00 0.00 0.00 3.28
382 383 8.551205 GCATTTACTTCTTCTTTTTCTTTTGGG 58.449 33.333 0.00 0.00 0.00 4.12
383 384 8.551205 CATTTACTTCTTCTTTTTCTTTTGGGC 58.449 33.333 0.00 0.00 0.00 5.36
384 385 5.939764 ACTTCTTCTTTTTCTTTTGGGCT 57.060 34.783 0.00 0.00 0.00 5.19
385 386 6.299805 ACTTCTTCTTTTTCTTTTGGGCTT 57.700 33.333 0.00 0.00 0.00 4.35
386 387 6.108687 ACTTCTTCTTTTTCTTTTGGGCTTG 58.891 36.000 0.00 0.00 0.00 4.01
387 388 5.675684 TCTTCTTTTTCTTTTGGGCTTGT 57.324 34.783 0.00 0.00 0.00 3.16
388 389 6.048732 TCTTCTTTTTCTTTTGGGCTTGTT 57.951 33.333 0.00 0.00 0.00 2.83
389 390 5.874261 TCTTCTTTTTCTTTTGGGCTTGTTG 59.126 36.000 0.00 0.00 0.00 3.33
390 391 5.159273 TCTTTTTCTTTTGGGCTTGTTGT 57.841 34.783 0.00 0.00 0.00 3.32
391 392 4.934602 TCTTTTTCTTTTGGGCTTGTTGTG 59.065 37.500 0.00 0.00 0.00 3.33
392 393 2.307934 TTCTTTTGGGCTTGTTGTGC 57.692 45.000 0.00 0.00 0.00 4.57
393 394 1.484038 TCTTTTGGGCTTGTTGTGCT 58.516 45.000 0.00 0.00 0.00 4.40
394 395 1.136695 TCTTTTGGGCTTGTTGTGCTG 59.863 47.619 0.00 0.00 0.00 4.41
395 396 0.901124 TTTTGGGCTTGTTGTGCTGT 59.099 45.000 0.00 0.00 0.00 4.40
396 397 0.901124 TTTGGGCTTGTTGTGCTGTT 59.099 45.000 0.00 0.00 0.00 3.16
397 398 0.459489 TTGGGCTTGTTGTGCTGTTC 59.541 50.000 0.00 0.00 0.00 3.18
398 399 1.008538 GGGCTTGTTGTGCTGTTCG 60.009 57.895 0.00 0.00 0.00 3.95
399 400 1.658409 GGCTTGTTGTGCTGTTCGC 60.658 57.895 0.00 0.00 39.77 4.70
400 401 1.658409 GCTTGTTGTGCTGTTCGCC 60.658 57.895 0.00 0.00 38.05 5.54
401 402 1.008538 CTTGTTGTGCTGTTCGCCC 60.009 57.895 0.00 0.00 38.05 6.13
402 403 2.406452 CTTGTTGTGCTGTTCGCCCC 62.406 60.000 0.00 0.00 38.05 5.80
403 404 2.904866 GTTGTGCTGTTCGCCCCA 60.905 61.111 0.00 0.00 38.05 4.96
404 405 2.594303 TTGTGCTGTTCGCCCCAG 60.594 61.111 0.00 0.00 38.05 4.45
415 416 3.151906 GCCCCAGCGATCCTGTAT 58.848 61.111 9.47 0.00 40.06 2.29
416 417 1.004440 GCCCCAGCGATCCTGTATC 60.004 63.158 9.47 0.00 40.06 2.24
425 426 2.981859 GATCCTGTATCGGTGTTGGT 57.018 50.000 0.00 0.00 0.00 3.67
426 427 3.261981 GATCCTGTATCGGTGTTGGTT 57.738 47.619 0.00 0.00 0.00 3.67
427 428 2.465860 TCCTGTATCGGTGTTGGTTG 57.534 50.000 0.00 0.00 0.00 3.77
428 429 0.802494 CCTGTATCGGTGTTGGTTGC 59.198 55.000 0.00 0.00 0.00 4.17
429 430 1.610624 CCTGTATCGGTGTTGGTTGCT 60.611 52.381 0.00 0.00 0.00 3.91
430 431 2.151202 CTGTATCGGTGTTGGTTGCTT 58.849 47.619 0.00 0.00 0.00 3.91
431 432 2.552315 CTGTATCGGTGTTGGTTGCTTT 59.448 45.455 0.00 0.00 0.00 3.51
432 433 2.292016 TGTATCGGTGTTGGTTGCTTTG 59.708 45.455 0.00 0.00 0.00 2.77
433 434 0.673437 ATCGGTGTTGGTTGCTTTGG 59.327 50.000 0.00 0.00 0.00 3.28
434 435 0.394488 TCGGTGTTGGTTGCTTTGGA 60.394 50.000 0.00 0.00 0.00 3.53
435 436 0.457851 CGGTGTTGGTTGCTTTGGAA 59.542 50.000 0.00 0.00 0.00 3.53
436 437 1.068434 CGGTGTTGGTTGCTTTGGAAT 59.932 47.619 0.00 0.00 0.00 3.01
437 438 2.294791 CGGTGTTGGTTGCTTTGGAATA 59.705 45.455 0.00 0.00 0.00 1.75
438 439 3.649073 GGTGTTGGTTGCTTTGGAATAC 58.351 45.455 0.00 0.00 0.00 1.89
439 440 3.068873 GGTGTTGGTTGCTTTGGAATACA 59.931 43.478 0.00 0.00 0.00 2.29
440 441 4.442192 GGTGTTGGTTGCTTTGGAATACAA 60.442 41.667 0.00 0.00 37.28 2.41
441 442 5.112686 GTGTTGGTTGCTTTGGAATACAAA 58.887 37.500 0.00 0.00 46.34 2.83
448 449 2.588464 TTTGGAATACAAAGCGGGGA 57.412 45.000 0.00 0.00 43.81 4.81
449 450 1.828979 TTGGAATACAAAGCGGGGAC 58.171 50.000 0.00 0.00 35.79 4.46
450 451 1.614850 TTGGAATACAAAGCGGGGACC 60.615 52.381 0.00 0.00 40.36 4.46
451 452 3.957966 TTGGAATACAAAGCGGGGACCT 61.958 50.000 0.00 0.00 41.30 3.85
452 453 5.412143 TTGGAATACAAAGCGGGGACCTT 62.412 47.826 0.00 0.00 41.30 3.50
453 454 6.828270 TTGGAATACAAAGCGGGGACCTTT 62.828 45.833 0.00 0.00 41.30 3.11
514 515 4.327982 TTTAGGAGGCGAGATCTTCATG 57.672 45.455 0.00 0.00 0.00 3.07
543 544 3.509137 GACCACGACAAGGCGGACA 62.509 63.158 0.00 0.00 35.12 4.02
550 551 1.653151 GACAAGGCGGACATAACCTC 58.347 55.000 0.00 0.00 31.86 3.85
576 577 0.687354 AGTGAGAGAACAACGGCCAT 59.313 50.000 2.24 0.00 0.00 4.40
624 628 4.361451 AACTGAATGCAATCCGATTCAC 57.639 40.909 0.00 0.00 32.51 3.18
631 635 2.830923 TGCAATCCGATTCACCCAATTT 59.169 40.909 0.00 0.00 0.00 1.82
632 636 3.119173 TGCAATCCGATTCACCCAATTTC 60.119 43.478 0.00 0.00 0.00 2.17
636 640 4.782019 TCCGATTCACCCAATTTCTTTG 57.218 40.909 0.00 0.00 34.93 2.77
715 719 1.908066 AATGAAAAGTCGCCGACGGC 61.908 55.000 29.10 29.10 46.74 5.68
944 948 0.312416 AGACAGACAGACGCACAGAC 59.688 55.000 0.00 0.00 0.00 3.51
951 955 0.317854 CAGACGCACAGACTGACGAA 60.318 55.000 22.94 0.00 43.62 3.85
1108 1118 3.998672 GCCAAGGACCGGACGACA 61.999 66.667 9.46 0.00 0.00 4.35
1111 1121 2.915659 AAGGACCGGACGACAGCA 60.916 61.111 9.46 0.00 0.00 4.41
1115 1125 2.282674 ACCGGACGACAGCAGGTA 60.283 61.111 9.46 0.00 32.76 3.08
1201 1214 4.385405 ACTCGGTGAGCAGCTGCC 62.385 66.667 34.39 24.89 43.38 4.85
1208 1221 1.915266 TGAGCAGCTGCCACTACCT 60.915 57.895 34.39 14.97 43.38 3.08
1209 1222 1.449246 GAGCAGCTGCCACTACCTG 60.449 63.158 34.39 0.00 43.38 4.00
1210 1223 1.892819 GAGCAGCTGCCACTACCTGA 61.893 60.000 34.39 0.00 43.38 3.86
1212 1225 1.023513 GCAGCTGCCACTACCTGAAG 61.024 60.000 28.76 0.00 34.31 3.02
1213 1226 1.023513 CAGCTGCCACTACCTGAAGC 61.024 60.000 0.00 0.00 32.30 3.86
1216 1229 0.107945 CTGCCACTACCTGAAGCCTC 60.108 60.000 0.00 0.00 0.00 4.70
1217 1230 0.545309 TGCCACTACCTGAAGCCTCT 60.545 55.000 0.00 0.00 0.00 3.69
1221 1234 3.366396 CCACTACCTGAAGCCTCTCTTA 58.634 50.000 0.00 0.00 34.56 2.10
1227 1240 4.033709 ACCTGAAGCCTCTCTTATTAGCA 58.966 43.478 0.00 0.00 34.56 3.49
1248 1261 2.039405 GCCTCTGCTTCTGTGCCTG 61.039 63.158 0.00 0.00 33.53 4.85
1251 1264 1.405256 CCTCTGCTTCTGTGCCTGTAG 60.405 57.143 0.00 0.00 0.00 2.74
1275 1288 4.731000 TGTTCGTGCGTTTAACTGAATTTG 59.269 37.500 0.00 0.00 0.00 2.32
1276 1289 4.539509 TCGTGCGTTTAACTGAATTTGT 57.460 36.364 0.00 0.00 0.00 2.83
1277 1290 4.520078 TCGTGCGTTTAACTGAATTTGTC 58.480 39.130 0.00 0.00 0.00 3.18
1279 1292 5.462729 TCGTGCGTTTAACTGAATTTGTCTA 59.537 36.000 0.00 0.00 0.00 2.59
1283 1296 5.564127 GCGTTTAACTGAATTTGTCTACTGC 59.436 40.000 0.00 0.00 0.00 4.40
1288 1301 3.257393 CTGAATTTGTCTACTGCGCTCT 58.743 45.455 9.73 0.00 0.00 4.09
1309 1322 4.400961 AGAACGCCCTGGAGCTGC 62.401 66.667 0.00 0.00 0.00 5.25
1313 1326 4.399395 CGCCCTGGAGCTGCAAGA 62.399 66.667 9.92 0.00 34.07 3.02
1344 1357 2.660552 CACGTGTGGTGGTCCGAC 60.661 66.667 7.58 0.00 43.16 4.79
1423 1436 1.883084 GTCTCCGGTATGCGCCTTG 60.883 63.158 4.18 0.00 0.00 3.61
1449 1462 3.141398 TGCAACAGAGTTGGATCTTGTC 58.859 45.455 11.39 0.00 0.00 3.18
1457 1470 5.809562 CAGAGTTGGATCTTGTCATCAGTAC 59.190 44.000 0.00 0.00 0.00 2.73
1491 1504 5.047519 GCTGTAGGTTAAGTCAACACCTAGA 60.048 44.000 0.00 0.00 42.65 2.43
1507 1520 1.526041 CTAGAGAGCAATCGCACATGC 59.474 52.381 0.00 0.00 42.27 4.06
1568 1581 2.941720 GAGAAACATCACCTGCTGATCC 59.058 50.000 0.00 0.00 37.53 3.36
1602 1615 1.438651 TCGTCTGCTCCAAAATTCCG 58.561 50.000 0.00 0.00 0.00 4.30
1799 1816 1.473278 GAAACCGAGTCAGACTCCGAT 59.527 52.381 22.65 9.97 42.12 4.18
1885 1902 2.808543 GGCGAATAAGAAGGTATGCAGG 59.191 50.000 0.00 0.00 0.00 4.85
1916 1934 3.153919 TGTGCCCAGTTCTGTAAATTCC 58.846 45.455 0.00 0.00 0.00 3.01
1937 1955 7.639113 TTCCAATTAACTCTGAACAAACTGT 57.361 32.000 0.00 0.00 0.00 3.55
1941 1964 9.965824 CCAATTAACTCTGAACAAACTGTTTAT 57.034 29.630 5.31 0.00 41.28 1.40
2012 2035 3.319198 TCCAACAGGGAGTCGGCC 61.319 66.667 0.00 0.00 42.15 6.13
2039 2062 2.604686 AGGAGGAGGAAGCACGCA 60.605 61.111 0.00 0.00 0.00 5.24
2042 2065 1.301716 GAGGAGGAAGCACGCACAA 60.302 57.895 0.00 0.00 0.00 3.33
2043 2066 0.674895 GAGGAGGAAGCACGCACAAT 60.675 55.000 0.00 0.00 0.00 2.71
2054 2077 2.412847 GCACGCACAATTAACTGACCTC 60.413 50.000 0.00 0.00 0.00 3.85
2070 2093 0.317160 CCTCGAGTTGCAGGTACACA 59.683 55.000 12.31 0.00 0.00 3.72
2119 2144 8.508875 TGTTTTATCAAACGGAAATTACCTCTC 58.491 33.333 0.00 0.00 44.76 3.20
2132 2157 4.803098 TTACCTCTCTGTAGCCTTGTTC 57.197 45.455 0.00 0.00 0.00 3.18
2134 2159 1.902508 CCTCTCTGTAGCCTTGTTCCA 59.097 52.381 0.00 0.00 0.00 3.53
2137 2162 3.445008 TCTCTGTAGCCTTGTTCCATCT 58.555 45.455 0.00 0.00 0.00 2.90
2160 2185 0.608640 TGCACATGCCATGATGCAAA 59.391 45.000 23.37 9.17 45.84 3.68
2161 2186 1.003851 GCACATGCCATGATGCAAAC 58.996 50.000 20.14 0.00 45.84 2.93
2162 2187 1.273688 CACATGCCATGATGCAAACG 58.726 50.000 12.53 0.00 45.84 3.60
2167 2192 1.335780 TGCCATGATGCAAACGTGTTC 60.336 47.619 12.98 7.11 38.56 3.18
2199 2226 1.671979 CATCGACATGTGCCATCCTT 58.328 50.000 1.15 0.00 0.00 3.36
2280 2307 0.751277 CCAACCAGCAGTTCACCACA 60.751 55.000 0.00 0.00 36.18 4.17
2358 2389 6.954684 AGGTAACAGTTCTCCTCTGATAGAAA 59.045 38.462 4.61 0.00 41.41 2.52
2359 2390 7.455008 AGGTAACAGTTCTCCTCTGATAGAAAA 59.545 37.037 4.61 0.00 41.41 2.29
2410 2449 8.896744 TCATCAGTTCCATAAACATCTGAAATC 58.103 33.333 0.00 0.00 40.56 2.17
2435 2474 2.549633 CGCAGGTAAAAATGGCAGAG 57.450 50.000 0.00 0.00 0.00 3.35
2495 2534 2.825836 CAGCTCGGATTGGCACCC 60.826 66.667 0.00 0.00 0.00 4.61
2501 2540 1.209504 CTCGGATTGGCACCCTTTCTA 59.790 52.381 0.00 0.00 0.00 2.10
2764 2803 5.395682 TGTATAGTAACGAACACTGGCTT 57.604 39.130 0.00 0.00 0.00 4.35
2814 2853 2.755103 GCAGGCTGCAAAGGTACTAAAT 59.245 45.455 33.33 0.00 44.26 1.40
2896 2935 4.464947 TGATGTTCATGTACAACCAACCA 58.535 39.130 9.35 0.00 0.00 3.67
2946 2986 9.030301 TGTAACTTCTGCTAAAAATTTCTTTGC 57.970 29.630 0.00 2.46 0.00 3.68
2965 3012 7.168219 TCTTTGCTCCATACTTGTACAGAAAT 58.832 34.615 0.00 0.00 0.00 2.17
3012 3060 5.064452 GGTTCTTTGATGTAGCTCTGATGTG 59.936 44.000 0.00 0.00 0.00 3.21
3015 3063 3.615224 TGATGTAGCTCTGATGTGCAA 57.385 42.857 0.00 0.00 35.37 4.08
3033 3081 7.112452 TGTGCAACATCAGTGTATAGTATCT 57.888 36.000 0.00 0.00 45.67 1.98
3034 3082 8.232913 TGTGCAACATCAGTGTATAGTATCTA 57.767 34.615 0.00 0.00 45.67 1.98
3036 3084 7.595502 GTGCAACATCAGTGTATAGTATCTACC 59.404 40.741 0.00 0.00 37.67 3.18
3058 3114 0.595095 GTTGGCAGTTCTGAAGGCAG 59.405 55.000 13.82 0.00 43.67 4.85
3059 3115 0.538057 TTGGCAGTTCTGAAGGCAGG 60.538 55.000 13.82 0.00 42.53 4.85
3060 3116 2.338785 GGCAGTTCTGAAGGCAGGC 61.339 63.158 13.82 3.58 42.53 4.85
3064 3120 1.676967 GTTCTGAAGGCAGGCAGGG 60.677 63.158 0.00 0.00 42.53 4.45
3075 3131 1.952296 GCAGGCAGGGAATGATGTAAG 59.048 52.381 0.00 0.00 0.00 2.34
3091 3147 1.071699 GTAAGCCTCACACCTCAACCA 59.928 52.381 0.00 0.00 0.00 3.67
3092 3148 0.773644 AAGCCTCACACCTCAACCAT 59.226 50.000 0.00 0.00 0.00 3.55
3093 3149 0.037303 AGCCTCACACCTCAACCATG 59.963 55.000 0.00 0.00 0.00 3.66
3098 3154 1.162698 CACACCTCAACCATGCTCAG 58.837 55.000 0.00 0.00 0.00 3.35
3101 3157 0.403271 ACCTCAACCATGCTCAGCTT 59.597 50.000 0.00 0.00 0.00 3.74
3103 3159 1.339824 CCTCAACCATGCTCAGCTTCT 60.340 52.381 0.00 0.00 0.00 2.85
3143 3199 8.594881 TTGTGTTTGTACAAAACAGTGAAAAT 57.405 26.923 22.14 0.00 40.38 1.82
3158 3214 6.148480 ACAGTGAAAATTAGAGTGCAGATGTC 59.852 38.462 0.00 0.00 0.00 3.06
3162 3218 7.695618 GTGAAAATTAGAGTGCAGATGTCAATC 59.304 37.037 0.00 0.00 0.00 2.67
3182 3238 4.880886 TCAAATGACATCATAACAGCCG 57.119 40.909 0.00 0.00 35.10 5.52
3184 3240 2.627515 ATGACATCATAACAGCCGCT 57.372 45.000 0.00 0.00 34.26 5.52
3241 3298 7.121907 AGGTCATAAGGAAATTTCTTCTCTTGC 59.878 37.037 17.42 0.00 0.00 4.01
3242 3299 7.254137 GTCATAAGGAAATTTCTTCTCTTGCC 58.746 38.462 17.42 0.00 0.00 4.52
3303 3366 7.311360 CCCATAGGACCCTAAGGAAGAAATATC 60.311 44.444 16.61 0.00 39.10 1.63
3311 3374 6.331837 CCCTAAGGAAGAAATATCCAGGGTTA 59.668 42.308 8.97 0.00 41.91 2.85
3312 3375 7.147195 CCCTAAGGAAGAAATATCCAGGGTTAA 60.147 40.741 8.97 0.00 41.91 2.01
3313 3376 8.279361 CCTAAGGAAGAAATATCCAGGGTTAAA 58.721 37.037 0.00 0.00 39.55 1.52
3315 3378 7.039722 AGGAAGAAATATCCAGGGTTAAACA 57.960 36.000 0.00 0.00 39.55 2.83
3316 3379 6.890268 AGGAAGAAATATCCAGGGTTAAACAC 59.110 38.462 0.00 0.00 39.55 3.32
3317 3380 6.890268 GGAAGAAATATCCAGGGTTAAACACT 59.110 38.462 0.00 0.00 36.92 3.55
3318 3381 7.067129 GGAAGAAATATCCAGGGTTAAACACTC 59.933 40.741 0.00 0.00 36.92 3.51
3319 3382 7.272144 AGAAATATCCAGGGTTAAACACTCT 57.728 36.000 0.00 0.00 36.14 3.24
3320 3383 7.699878 AGAAATATCCAGGGTTAAACACTCTT 58.300 34.615 0.00 0.00 31.53 2.85
3321 3384 8.170730 AGAAATATCCAGGGTTAAACACTCTTT 58.829 33.333 0.00 0.00 31.53 2.52
3322 3385 7.939784 AATATCCAGGGTTAAACACTCTTTC 57.060 36.000 0.00 0.00 31.53 2.62
3323 3386 5.584551 ATCCAGGGTTAAACACTCTTTCT 57.415 39.130 0.00 0.00 31.53 2.52
3329 3392 6.425417 CAGGGTTAAACACTCTTTCTCTCTTC 59.575 42.308 0.00 0.00 31.53 2.87
3363 3426 4.891992 ACTACTTGTGCAGTTGTCCTAT 57.108 40.909 0.00 0.00 36.87 2.57
3364 3427 5.995565 ACTACTTGTGCAGTTGTCCTATA 57.004 39.130 0.00 0.00 36.87 1.31
3446 3509 2.741092 GTTCGGACCTGGCTGTCA 59.259 61.111 9.39 0.00 36.97 3.58
3450 3520 1.669115 CGGACCTGGCTGTCACAAG 60.669 63.158 9.39 0.00 36.97 3.16
3471 3541 0.528466 CCGCGCATACACACAGAGAT 60.528 55.000 8.75 0.00 0.00 2.75
3472 3542 0.573987 CGCGCATACACACAGAGATG 59.426 55.000 8.75 0.00 0.00 2.90
3475 3545 0.302890 GCATACACACAGAGATGCGC 59.697 55.000 0.00 0.00 35.75 6.09
3481 3551 0.532640 ACACAGAGATGCGCACACAA 60.533 50.000 14.90 0.00 0.00 3.33
3482 3552 0.800631 CACAGAGATGCGCACACAAT 59.199 50.000 14.90 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.879682 CACCACCATGCGCCATCG 61.880 66.667 4.18 0.00 39.07 3.84
11 12 3.520862 CCACCACCATGCGCCATC 61.521 66.667 4.18 0.00 0.00 3.51
34 35 4.459089 GAGCCGACCAGCCAGACC 62.459 72.222 0.00 0.00 0.00 3.85
35 36 4.459089 GGAGCCGACCAGCCAGAC 62.459 72.222 0.00 0.00 0.00 3.51
57 58 4.733542 AATCCCCACCGCCCAACG 62.734 66.667 0.00 0.00 43.15 4.10
58 59 3.068064 CAATCCCCACCGCCCAAC 61.068 66.667 0.00 0.00 0.00 3.77
59 60 4.374584 CCAATCCCCACCGCCCAA 62.375 66.667 0.00 0.00 0.00 4.12
61 62 4.506255 CTCCAATCCCCACCGCCC 62.506 72.222 0.00 0.00 0.00 6.13
62 63 2.372074 TACTCCAATCCCCACCGCC 61.372 63.158 0.00 0.00 0.00 6.13
63 64 1.153229 GTACTCCAATCCCCACCGC 60.153 63.158 0.00 0.00 0.00 5.68
64 65 1.143183 CGTACTCCAATCCCCACCG 59.857 63.158 0.00 0.00 0.00 4.94
65 66 1.525442 CCGTACTCCAATCCCCACC 59.475 63.158 0.00 0.00 0.00 4.61
66 67 0.979187 TCCCGTACTCCAATCCCCAC 60.979 60.000 0.00 0.00 0.00 4.61
67 68 0.689745 CTCCCGTACTCCAATCCCCA 60.690 60.000 0.00 0.00 0.00 4.96
68 69 0.398098 TCTCCCGTACTCCAATCCCC 60.398 60.000 0.00 0.00 0.00 4.81
69 70 1.492764 TTCTCCCGTACTCCAATCCC 58.507 55.000 0.00 0.00 0.00 3.85
70 71 3.494573 GGATTTCTCCCGTACTCCAATCC 60.495 52.174 0.00 0.00 35.28 3.01
71 72 3.388350 AGGATTTCTCCCGTACTCCAATC 59.612 47.826 0.00 0.00 43.21 2.67
72 73 3.385115 AGGATTTCTCCCGTACTCCAAT 58.615 45.455 0.00 0.00 43.21 3.16
73 74 2.829023 AGGATTTCTCCCGTACTCCAA 58.171 47.619 0.00 0.00 43.21 3.53
74 75 2.500098 CAAGGATTTCTCCCGTACTCCA 59.500 50.000 0.00 0.00 43.21 3.86
75 76 2.742204 GCAAGGATTTCTCCCGTACTCC 60.742 54.545 0.00 0.00 43.21 3.85
76 77 2.552031 GCAAGGATTTCTCCCGTACTC 58.448 52.381 0.00 0.00 43.21 2.59
77 78 1.209747 GGCAAGGATTTCTCCCGTACT 59.790 52.381 0.00 0.00 43.21 2.73
78 79 1.664873 GGCAAGGATTTCTCCCGTAC 58.335 55.000 0.00 0.00 43.21 3.67
79 80 0.177141 CGGCAAGGATTTCTCCCGTA 59.823 55.000 0.00 0.00 43.21 4.02
80 81 1.078426 CGGCAAGGATTTCTCCCGT 60.078 57.895 0.00 0.00 43.21 5.28
81 82 0.179045 ATCGGCAAGGATTTCTCCCG 60.179 55.000 0.00 0.00 43.21 5.14
82 83 1.141858 AGATCGGCAAGGATTTCTCCC 59.858 52.381 0.00 0.00 43.21 4.30
83 84 2.629336 AGATCGGCAAGGATTTCTCC 57.371 50.000 0.00 0.00 42.43 3.71
84 85 2.541762 CGAAGATCGGCAAGGATTTCTC 59.458 50.000 0.00 0.00 36.00 2.87
85 86 2.555199 CGAAGATCGGCAAGGATTTCT 58.445 47.619 0.00 0.00 36.00 2.52
110 111 3.490759 GCAGGTGTCACCGCATCG 61.491 66.667 24.64 11.91 44.90 3.84
111 112 3.490759 CGCAGGTGTCACCGCATC 61.491 66.667 27.04 14.20 44.90 3.91
124 125 3.443045 GAATGGTGGCACCCGCAG 61.443 66.667 32.61 0.00 41.24 5.18
126 127 4.740822 AGGAATGGTGGCACCCGC 62.741 66.667 32.61 20.81 37.50 6.13
127 128 2.035626 AAGGAATGGTGGCACCCG 59.964 61.111 32.61 0.00 37.50 5.28
128 129 1.682344 GGAAGGAATGGTGGCACCC 60.682 63.158 32.61 17.83 37.50 4.61
129 130 0.967380 CAGGAAGGAATGGTGGCACC 60.967 60.000 29.75 29.75 39.22 5.01
130 131 0.967380 CCAGGAAGGAATGGTGGCAC 60.967 60.000 9.70 9.70 41.22 5.01
131 132 1.139498 TCCAGGAAGGAATGGTGGCA 61.139 55.000 0.00 0.00 45.65 4.92
132 133 1.691219 TCCAGGAAGGAATGGTGGC 59.309 57.895 0.00 0.00 45.65 5.01
140 141 1.609501 CGACACCCTCCAGGAAGGA 60.610 63.158 11.56 0.00 46.75 3.36
141 142 2.660064 CCGACACCCTCCAGGAAGG 61.660 68.421 1.97 1.97 39.89 3.46
142 143 1.913762 ACCGACACCCTCCAGGAAG 60.914 63.158 0.00 0.00 39.89 3.46
143 144 2.203182 ACCGACACCCTCCAGGAA 59.797 61.111 0.00 0.00 39.89 3.36
144 145 2.455960 ATCACCGACACCCTCCAGGA 62.456 60.000 0.00 0.00 39.89 3.86
145 146 0.686441 TATCACCGACACCCTCCAGG 60.686 60.000 0.00 0.00 43.78 4.45
146 147 1.341531 GATATCACCGACACCCTCCAG 59.658 57.143 0.00 0.00 0.00 3.86
147 148 1.410004 GATATCACCGACACCCTCCA 58.590 55.000 0.00 0.00 0.00 3.86
148 149 0.680061 GGATATCACCGACACCCTCC 59.320 60.000 4.83 0.00 0.00 4.30
149 150 1.410004 TGGATATCACCGACACCCTC 58.590 55.000 4.83 0.00 0.00 4.30
150 151 1.971357 GATGGATATCACCGACACCCT 59.029 52.381 4.83 0.00 33.38 4.34
151 152 1.002087 GGATGGATATCACCGACACCC 59.998 57.143 4.83 0.00 34.90 4.61
152 153 1.002087 GGGATGGATATCACCGACACC 59.998 57.143 4.83 0.00 34.90 4.16
153 154 1.002087 GGGGATGGATATCACCGACAC 59.998 57.143 4.83 0.00 46.46 3.67
154 155 1.348064 GGGGATGGATATCACCGACA 58.652 55.000 4.83 0.00 46.46 4.35
159 160 1.630878 GAGGTGGGGGATGGATATCAC 59.369 57.143 4.83 0.00 35.92 3.06
160 161 1.486943 GGAGGTGGGGGATGGATATCA 60.487 57.143 4.83 0.00 34.90 2.15
161 162 1.290134 GGAGGTGGGGGATGGATATC 58.710 60.000 0.00 0.00 0.00 1.63
162 163 0.178831 GGGAGGTGGGGGATGGATAT 60.179 60.000 0.00 0.00 0.00 1.63
163 164 1.241929 GGGAGGTGGGGGATGGATA 59.758 63.158 0.00 0.00 0.00 2.59
164 165 2.038330 GGGAGGTGGGGGATGGAT 60.038 66.667 0.00 0.00 0.00 3.41
165 166 3.300962 AGGGAGGTGGGGGATGGA 61.301 66.667 0.00 0.00 0.00 3.41
166 167 2.774351 GAGGGAGGTGGGGGATGG 60.774 72.222 0.00 0.00 0.00 3.51
167 168 2.774351 GGAGGGAGGTGGGGGATG 60.774 72.222 0.00 0.00 0.00 3.51
168 169 4.499116 CGGAGGGAGGTGGGGGAT 62.499 72.222 0.00 0.00 0.00 3.85
181 182 4.697756 TTTCCCCAGCACGCGGAG 62.698 66.667 12.47 3.23 0.00 4.63
193 194 1.212195 GGACATGTCCTAGGGTTTCCC 59.788 57.143 33.47 6.83 46.16 3.97
194 195 2.711978 GGACATGTCCTAGGGTTTCC 57.288 55.000 33.47 7.36 46.16 3.13
199 200 2.808206 GCCCGGACATGTCCTAGGG 61.808 68.421 36.28 36.28 46.90 3.53
204 205 4.408821 TGCTGCCCGGACATGTCC 62.409 66.667 31.59 31.59 46.18 4.02
205 206 2.821366 CTGCTGCCCGGACATGTC 60.821 66.667 17.91 17.91 0.00 3.06
224 225 3.824510 GAAAGCGACGCCGACGAC 61.825 66.667 17.79 4.29 43.93 4.34
227 228 2.727684 GAAGGAAAGCGACGCCGAC 61.728 63.158 17.79 7.69 38.22 4.79
228 229 2.430382 AAGAAGGAAAGCGACGCCGA 62.430 55.000 17.79 0.00 38.22 5.54
229 230 2.027625 AAGAAGGAAAGCGACGCCG 61.028 57.895 17.79 0.00 39.16 6.46
230 231 1.497722 CAAGAAGGAAAGCGACGCC 59.502 57.895 17.79 0.35 0.00 5.68
231 232 0.949105 TCCAAGAAGGAAAGCGACGC 60.949 55.000 13.03 13.03 45.65 5.19
232 233 3.210857 TCCAAGAAGGAAAGCGACG 57.789 52.632 0.00 0.00 45.65 5.12
240 241 1.140312 AACAGCACCTCCAAGAAGGA 58.860 50.000 0.00 0.00 46.75 3.36
241 242 1.986882 AAACAGCACCTCCAAGAAGG 58.013 50.000 0.00 0.00 42.55 3.46
242 243 2.689983 ACAAAACAGCACCTCCAAGAAG 59.310 45.455 0.00 0.00 0.00 2.85
243 244 2.733956 ACAAAACAGCACCTCCAAGAA 58.266 42.857 0.00 0.00 0.00 2.52
244 245 2.435372 ACAAAACAGCACCTCCAAGA 57.565 45.000 0.00 0.00 0.00 3.02
245 246 2.032030 CGTACAAAACAGCACCTCCAAG 60.032 50.000 0.00 0.00 0.00 3.61
246 247 1.944024 CGTACAAAACAGCACCTCCAA 59.056 47.619 0.00 0.00 0.00 3.53
247 248 1.588674 CGTACAAAACAGCACCTCCA 58.411 50.000 0.00 0.00 0.00 3.86
248 249 0.237498 GCGTACAAAACAGCACCTCC 59.763 55.000 0.00 0.00 0.00 4.30
249 250 0.110823 CGCGTACAAAACAGCACCTC 60.111 55.000 0.00 0.00 0.00 3.85
250 251 1.503818 CCGCGTACAAAACAGCACCT 61.504 55.000 4.92 0.00 0.00 4.00
251 252 1.082366 CCGCGTACAAAACAGCACC 60.082 57.895 4.92 0.00 0.00 5.01
252 253 0.656205 CACCGCGTACAAAACAGCAC 60.656 55.000 4.92 0.00 0.00 4.40
253 254 1.644372 CACCGCGTACAAAACAGCA 59.356 52.632 4.92 0.00 0.00 4.41
254 255 1.082366 CCACCGCGTACAAAACAGC 60.082 57.895 4.92 0.00 0.00 4.40
255 256 0.658897 AACCACCGCGTACAAAACAG 59.341 50.000 4.92 0.00 0.00 3.16
256 257 0.656785 GAACCACCGCGTACAAAACA 59.343 50.000 4.92 0.00 0.00 2.83
257 258 0.383368 CGAACCACCGCGTACAAAAC 60.383 55.000 4.92 0.00 0.00 2.43
258 259 1.497223 CCGAACCACCGCGTACAAAA 61.497 55.000 4.92 0.00 0.00 2.44
259 260 1.955157 CCGAACCACCGCGTACAAA 60.955 57.895 4.92 0.00 0.00 2.83
260 261 2.356075 CCGAACCACCGCGTACAA 60.356 61.111 4.92 0.00 0.00 2.41
261 262 3.271706 CTCCGAACCACCGCGTACA 62.272 63.158 4.92 0.00 0.00 2.90
262 263 2.505557 CTCCGAACCACCGCGTAC 60.506 66.667 4.92 0.00 0.00 3.67
263 264 4.424566 GCTCCGAACCACCGCGTA 62.425 66.667 4.92 0.00 0.00 4.42
267 268 4.796231 CGAGGCTCCGAACCACCG 62.796 72.222 9.32 0.00 0.00 4.94
268 269 4.452733 CCGAGGCTCCGAACCACC 62.453 72.222 9.32 0.00 0.00 4.61
269 270 4.452733 CCCGAGGCTCCGAACCAC 62.453 72.222 9.32 0.00 0.00 4.16
271 272 3.703127 AACCCGAGGCTCCGAACC 61.703 66.667 9.32 0.00 0.00 3.62
272 273 1.880819 TACAACCCGAGGCTCCGAAC 61.881 60.000 9.32 0.00 0.00 3.95
273 274 1.601419 CTACAACCCGAGGCTCCGAA 61.601 60.000 9.32 0.00 0.00 4.30
274 275 2.036098 TACAACCCGAGGCTCCGA 59.964 61.111 9.32 0.00 0.00 4.55
275 276 2.348888 ACTACAACCCGAGGCTCCG 61.349 63.158 9.32 1.88 0.00 4.63
276 277 1.218316 CACTACAACCCGAGGCTCC 59.782 63.158 9.32 0.00 0.00 4.70
277 278 1.218316 CCACTACAACCCGAGGCTC 59.782 63.158 3.87 3.87 0.00 4.70
278 279 1.125711 AACCACTACAACCCGAGGCT 61.126 55.000 0.00 0.00 0.00 4.58
279 280 0.609662 TAACCACTACAACCCGAGGC 59.390 55.000 0.00 0.00 0.00 4.70
280 281 1.897802 ACTAACCACTACAACCCGAGG 59.102 52.381 0.00 0.00 0.00 4.63
281 282 2.824341 AGACTAACCACTACAACCCGAG 59.176 50.000 0.00 0.00 0.00 4.63
282 283 2.821969 GAGACTAACCACTACAACCCGA 59.178 50.000 0.00 0.00 0.00 5.14
283 284 2.824341 AGAGACTAACCACTACAACCCG 59.176 50.000 0.00 0.00 0.00 5.28
284 285 3.056035 CCAGAGACTAACCACTACAACCC 60.056 52.174 0.00 0.00 0.00 4.11
285 286 3.577415 ACCAGAGACTAACCACTACAACC 59.423 47.826 0.00 0.00 0.00 3.77
286 287 4.557205 CACCAGAGACTAACCACTACAAC 58.443 47.826 0.00 0.00 0.00 3.32
287 288 3.576982 CCACCAGAGACTAACCACTACAA 59.423 47.826 0.00 0.00 0.00 2.41
288 289 3.162666 CCACCAGAGACTAACCACTACA 58.837 50.000 0.00 0.00 0.00 2.74
289 290 2.496470 CCCACCAGAGACTAACCACTAC 59.504 54.545 0.00 0.00 0.00 2.73
290 291 2.816411 CCCACCAGAGACTAACCACTA 58.184 52.381 0.00 0.00 0.00 2.74
291 292 1.645710 CCCACCAGAGACTAACCACT 58.354 55.000 0.00 0.00 0.00 4.00
292 293 0.036294 GCCCACCAGAGACTAACCAC 60.036 60.000 0.00 0.00 0.00 4.16
293 294 1.541310 CGCCCACCAGAGACTAACCA 61.541 60.000 0.00 0.00 0.00 3.67
294 295 1.218316 CGCCCACCAGAGACTAACC 59.782 63.158 0.00 0.00 0.00 2.85
295 296 1.134560 CTACGCCCACCAGAGACTAAC 59.865 57.143 0.00 0.00 0.00 2.34
296 297 1.471119 CTACGCCCACCAGAGACTAA 58.529 55.000 0.00 0.00 0.00 2.24
297 298 1.035932 GCTACGCCCACCAGAGACTA 61.036 60.000 0.00 0.00 0.00 2.59
298 299 2.352032 GCTACGCCCACCAGAGACT 61.352 63.158 0.00 0.00 0.00 3.24
299 300 2.184579 GCTACGCCCACCAGAGAC 59.815 66.667 0.00 0.00 0.00 3.36
300 301 3.449227 CGCTACGCCCACCAGAGA 61.449 66.667 0.00 0.00 0.00 3.10
301 302 4.514577 CCGCTACGCCCACCAGAG 62.515 72.222 0.00 0.00 0.00 3.35
325 326 4.400109 TCGACAGAGCGCGGTGAC 62.400 66.667 18.92 1.03 0.00 3.67
326 327 4.103103 CTCGACAGAGCGCGGTGA 62.103 66.667 18.92 5.14 37.73 4.02
335 336 2.049156 CAACGGCAGCTCGACAGA 60.049 61.111 9.87 0.00 0.00 3.41
336 337 1.956170 AACAACGGCAGCTCGACAG 60.956 57.895 9.87 2.76 0.00 3.51
337 338 2.108157 AACAACGGCAGCTCGACA 59.892 55.556 9.87 0.00 0.00 4.35
338 339 2.551270 CAACAACGGCAGCTCGAC 59.449 61.111 9.87 0.00 0.00 4.20
339 340 2.664851 CCAACAACGGCAGCTCGA 60.665 61.111 9.87 0.00 0.00 4.04
347 348 3.915437 AGAAGTAAATGCCAACAACGG 57.085 42.857 0.00 0.00 0.00 4.44
348 349 5.108385 AGAAGAAGTAAATGCCAACAACG 57.892 39.130 0.00 0.00 0.00 4.10
349 350 7.770801 AAAAGAAGAAGTAAATGCCAACAAC 57.229 32.000 0.00 0.00 0.00 3.32
350 351 8.257306 AGAAAAAGAAGAAGTAAATGCCAACAA 58.743 29.630 0.00 0.00 0.00 2.83
351 352 7.781056 AGAAAAAGAAGAAGTAAATGCCAACA 58.219 30.769 0.00 0.00 0.00 3.33
352 353 8.648557 AAGAAAAAGAAGAAGTAAATGCCAAC 57.351 30.769 0.00 0.00 0.00 3.77
353 354 9.665719 AAAAGAAAAAGAAGAAGTAAATGCCAA 57.334 25.926 0.00 0.00 0.00 4.52
354 355 9.097257 CAAAAGAAAAAGAAGAAGTAAATGCCA 57.903 29.630 0.00 0.00 0.00 4.92
355 356 8.551205 CCAAAAGAAAAAGAAGAAGTAAATGCC 58.449 33.333 0.00 0.00 0.00 4.40
356 357 8.551205 CCCAAAAGAAAAAGAAGAAGTAAATGC 58.449 33.333 0.00 0.00 0.00 3.56
357 358 8.551205 GCCCAAAAGAAAAAGAAGAAGTAAATG 58.449 33.333 0.00 0.00 0.00 2.32
358 359 8.486210 AGCCCAAAAGAAAAAGAAGAAGTAAAT 58.514 29.630 0.00 0.00 0.00 1.40
359 360 7.847096 AGCCCAAAAGAAAAAGAAGAAGTAAA 58.153 30.769 0.00 0.00 0.00 2.01
360 361 7.418337 AGCCCAAAAGAAAAAGAAGAAGTAA 57.582 32.000 0.00 0.00 0.00 2.24
361 362 7.093509 ACAAGCCCAAAAGAAAAAGAAGAAGTA 60.094 33.333 0.00 0.00 0.00 2.24
362 363 5.939764 AGCCCAAAAGAAAAAGAAGAAGT 57.060 34.783 0.00 0.00 0.00 3.01
363 364 6.108687 ACAAGCCCAAAAGAAAAAGAAGAAG 58.891 36.000 0.00 0.00 0.00 2.85
364 365 6.048732 ACAAGCCCAAAAGAAAAAGAAGAA 57.951 33.333 0.00 0.00 0.00 2.52
365 366 5.675684 ACAAGCCCAAAAGAAAAAGAAGA 57.324 34.783 0.00 0.00 0.00 2.87
366 367 5.643348 ACAACAAGCCCAAAAGAAAAAGAAG 59.357 36.000 0.00 0.00 0.00 2.85
367 368 5.411053 CACAACAAGCCCAAAAGAAAAAGAA 59.589 36.000 0.00 0.00 0.00 2.52
368 369 4.934602 CACAACAAGCCCAAAAGAAAAAGA 59.065 37.500 0.00 0.00 0.00 2.52
369 370 4.437255 GCACAACAAGCCCAAAAGAAAAAG 60.437 41.667 0.00 0.00 0.00 2.27
370 371 3.438434 GCACAACAAGCCCAAAAGAAAAA 59.562 39.130 0.00 0.00 0.00 1.94
371 372 3.006247 GCACAACAAGCCCAAAAGAAAA 58.994 40.909 0.00 0.00 0.00 2.29
372 373 2.235898 AGCACAACAAGCCCAAAAGAAA 59.764 40.909 0.00 0.00 0.00 2.52
373 374 1.830477 AGCACAACAAGCCCAAAAGAA 59.170 42.857 0.00 0.00 0.00 2.52
374 375 1.136695 CAGCACAACAAGCCCAAAAGA 59.863 47.619 0.00 0.00 0.00 2.52
375 376 1.134729 ACAGCACAACAAGCCCAAAAG 60.135 47.619 0.00 0.00 0.00 2.27
376 377 0.901124 ACAGCACAACAAGCCCAAAA 59.099 45.000 0.00 0.00 0.00 2.44
377 378 0.901124 AACAGCACAACAAGCCCAAA 59.099 45.000 0.00 0.00 0.00 3.28
378 379 0.459489 GAACAGCACAACAAGCCCAA 59.541 50.000 0.00 0.00 0.00 4.12
379 380 1.723608 CGAACAGCACAACAAGCCCA 61.724 55.000 0.00 0.00 0.00 5.36
380 381 1.008538 CGAACAGCACAACAAGCCC 60.009 57.895 0.00 0.00 0.00 5.19
381 382 4.614673 CGAACAGCACAACAAGCC 57.385 55.556 0.00 0.00 0.00 4.35
398 399 1.004440 GATACAGGATCGCTGGGGC 60.004 63.158 13.60 0.00 0.00 5.80
406 407 2.936498 CAACCAACACCGATACAGGATC 59.064 50.000 0.00 0.00 34.73 3.36
407 408 2.939640 GCAACCAACACCGATACAGGAT 60.940 50.000 0.00 0.00 34.73 3.24
408 409 1.609580 GCAACCAACACCGATACAGGA 60.610 52.381 0.00 0.00 34.73 3.86
409 410 0.802494 GCAACCAACACCGATACAGG 59.198 55.000 0.00 0.00 37.30 4.00
410 411 1.808411 AGCAACCAACACCGATACAG 58.192 50.000 0.00 0.00 0.00 2.74
411 412 2.264005 AAGCAACCAACACCGATACA 57.736 45.000 0.00 0.00 0.00 2.29
412 413 2.351350 CCAAAGCAACCAACACCGATAC 60.351 50.000 0.00 0.00 0.00 2.24
413 414 1.883275 CCAAAGCAACCAACACCGATA 59.117 47.619 0.00 0.00 0.00 2.92
414 415 0.673437 CCAAAGCAACCAACACCGAT 59.327 50.000 0.00 0.00 0.00 4.18
415 416 0.394488 TCCAAAGCAACCAACACCGA 60.394 50.000 0.00 0.00 0.00 4.69
416 417 0.457851 TTCCAAAGCAACCAACACCG 59.542 50.000 0.00 0.00 0.00 4.94
417 418 2.908688 ATTCCAAAGCAACCAACACC 57.091 45.000 0.00 0.00 0.00 4.16
418 419 4.314740 TGTATTCCAAAGCAACCAACAC 57.685 40.909 0.00 0.00 0.00 3.32
419 420 5.344743 TTTGTATTCCAAAGCAACCAACA 57.655 34.783 0.00 0.00 38.12 3.33
429 430 2.164338 GTCCCCGCTTTGTATTCCAAA 58.836 47.619 0.00 0.00 40.71 3.28
430 431 1.614850 GGTCCCCGCTTTGTATTCCAA 60.615 52.381 0.00 0.00 0.00 3.53
431 432 0.034863 GGTCCCCGCTTTGTATTCCA 60.035 55.000 0.00 0.00 0.00 3.53
432 433 0.255033 AGGTCCCCGCTTTGTATTCC 59.745 55.000 0.00 0.00 0.00 3.01
433 434 2.124277 AAGGTCCCCGCTTTGTATTC 57.876 50.000 0.00 0.00 0.00 1.75
434 435 2.597578 AAAGGTCCCCGCTTTGTATT 57.402 45.000 0.00 0.00 0.00 1.89
435 436 2.597578 AAAAGGTCCCCGCTTTGTAT 57.402 45.000 0.00 0.00 0.00 2.29
436 437 2.368311 AAAAAGGTCCCCGCTTTGTA 57.632 45.000 0.00 0.00 0.00 2.41
437 438 3.217321 AAAAAGGTCCCCGCTTTGT 57.783 47.368 0.00 0.00 0.00 2.83
452 453 7.618502 TGCTCTTTGGTAATATAGCGAAAAA 57.381 32.000 0.00 0.00 32.67 1.94
453 454 7.618502 TTGCTCTTTGGTAATATAGCGAAAA 57.381 32.000 0.00 0.00 32.67 2.29
454 455 7.618502 TTTGCTCTTTGGTAATATAGCGAAA 57.381 32.000 0.00 0.00 32.00 3.46
455 456 7.469260 GTTTTGCTCTTTGGTAATATAGCGAA 58.531 34.615 0.00 0.00 32.84 4.70
456 457 6.237996 CGTTTTGCTCTTTGGTAATATAGCGA 60.238 38.462 0.00 0.00 32.67 4.93
457 458 5.901884 CGTTTTGCTCTTTGGTAATATAGCG 59.098 40.000 0.00 0.00 32.67 4.26
458 459 6.687105 CACGTTTTGCTCTTTGGTAATATAGC 59.313 38.462 0.00 0.00 0.00 2.97
496 497 0.392336 GCATGAAGATCTCGCCTCCT 59.608 55.000 0.00 0.00 0.00 3.69
543 544 6.042093 TGTTCTCTCACTTTGTCTGAGGTTAT 59.958 38.462 0.00 0.00 36.55 1.89
550 551 3.246226 CCGTTGTTCTCTCACTTTGTCTG 59.754 47.826 0.00 0.00 0.00 3.51
576 577 7.676004 TCTTATTGCCAGATTATGTTATCCGA 58.324 34.615 0.00 0.00 0.00 4.55
650 654 9.116067 TGCTCAAAGTGTACTTAAACAACTTAT 57.884 29.630 0.00 0.00 34.61 1.73
651 655 8.495361 TGCTCAAAGTGTACTTAAACAACTTA 57.505 30.769 0.00 0.00 34.61 2.24
652 656 7.335924 TCTGCTCAAAGTGTACTTAAACAACTT 59.664 33.333 0.00 0.00 34.61 2.66
653 657 6.821665 TCTGCTCAAAGTGTACTTAAACAACT 59.178 34.615 0.00 0.00 34.61 3.16
657 661 7.385205 TCAGATCTGCTCAAAGTGTACTTAAAC 59.615 37.037 18.36 0.00 34.61 2.01
862 866 3.899395 GGCGACGGCTTTTATGGT 58.101 55.556 15.00 0.00 39.81 3.55
944 948 0.661020 GGTGGTGGTGTTTTCGTCAG 59.339 55.000 0.00 0.00 0.00 3.51
951 955 1.816259 CGTCACGGTGGTGGTGTTT 60.816 57.895 8.50 0.00 44.50 2.83
994 998 2.002127 CGCACTTCTTCATCTCCGC 58.998 57.895 0.00 0.00 0.00 5.54
1095 1105 3.374402 CTGCTGTCGTCCGGTCCT 61.374 66.667 0.00 0.00 0.00 3.85
1099 1109 2.181021 GTACCTGCTGTCGTCCGG 59.819 66.667 0.00 0.00 0.00 5.14
1100 1110 2.202440 CGTACCTGCTGTCGTCCG 60.202 66.667 0.00 0.00 0.00 4.79
1101 1111 2.181021 CCGTACCTGCTGTCGTCC 59.819 66.667 0.00 0.00 0.00 4.79
1108 1118 4.436998 GTGCTCGCCGTACCTGCT 62.437 66.667 1.12 0.00 0.00 4.24
1135 1145 4.144703 GGGGGAGAAGACGCCGTC 62.145 72.222 9.71 9.71 42.62 4.79
1201 1214 5.606348 AATAAGAGAGGCTTCAGGTAGTG 57.394 43.478 0.00 0.00 38.05 2.74
1208 1221 4.681781 GCTGTGCTAATAAGAGAGGCTTCA 60.682 45.833 0.00 0.00 38.05 3.02
1209 1222 3.807071 GCTGTGCTAATAAGAGAGGCTTC 59.193 47.826 0.00 0.00 38.05 3.86
1210 1223 3.432890 GGCTGTGCTAATAAGAGAGGCTT 60.433 47.826 0.00 0.00 40.68 4.35
1212 1225 2.103941 AGGCTGTGCTAATAAGAGAGGC 59.896 50.000 0.00 0.00 0.00 4.70
1213 1226 3.640967 AGAGGCTGTGCTAATAAGAGAGG 59.359 47.826 0.00 0.00 0.00 3.69
1216 1229 3.129871 GCAGAGGCTGTGCTAATAAGAG 58.870 50.000 27.49 0.00 37.96 2.85
1217 1230 3.185246 GCAGAGGCTGTGCTAATAAGA 57.815 47.619 27.49 0.00 37.96 2.10
1244 1257 1.219522 AACGCACGAACACTACAGGC 61.220 55.000 0.00 0.00 0.00 4.85
1248 1261 3.486841 TCAGTTAAACGCACGAACACTAC 59.513 43.478 0.00 0.00 0.00 2.73
1251 1264 3.307339 TTCAGTTAAACGCACGAACAC 57.693 42.857 0.00 0.00 0.00 3.32
1288 1301 3.019003 GCTCCAGGGCGTTCTGCTA 62.019 63.158 2.31 0.00 45.43 3.49
1309 1322 3.793144 GCCGGCGTTGCTCTCTTG 61.793 66.667 12.58 0.00 0.00 3.02
1378 1391 4.555709 TTGCGACTGGGTTGGCGT 62.556 61.111 0.00 0.00 0.00 5.68
1423 1436 0.250467 TCCAACTCTGTTGCAGGCTC 60.250 55.000 5.04 0.00 31.51 4.70
1449 1462 0.042708 GCATTCTGCGCGTACTGATG 60.043 55.000 8.43 6.65 31.71 3.07
1507 1520 2.222886 CGATGAAATCCACTGCAGTTCG 60.223 50.000 18.94 17.25 41.39 3.95
1512 1525 4.278170 AGTTTTTCGATGAAATCCACTGCA 59.722 37.500 0.00 0.00 41.39 4.41
1568 1581 0.450482 GACGAAAACATCCGCACACG 60.450 55.000 0.00 0.00 39.67 4.49
1629 1642 0.911769 TCTATGTTGGACCAGGGCAG 59.088 55.000 0.00 0.00 0.00 4.85
1799 1816 0.671472 TCTCGACCAACGACTCGCTA 60.671 55.000 0.00 0.00 46.45 4.26
1808 1825 1.446366 GCCCCCTATCTCGACCAAC 59.554 63.158 0.00 0.00 0.00 3.77
1853 1870 5.463724 CCTTCTTATTCGCCTTGTATCTGAC 59.536 44.000 0.00 0.00 0.00 3.51
1885 1902 1.751927 CTGGGCACAGGCTTGATCC 60.752 63.158 8.54 2.60 41.13 3.36
1972 1995 5.640147 ACACCATCCTGAAATTTACAAGGA 58.360 37.500 15.47 15.47 0.00 3.36
1974 1997 5.954335 GGACACCATCCTGAAATTTACAAG 58.046 41.667 0.00 0.00 45.22 3.16
1975 1998 5.975693 GGACACCATCCTGAAATTTACAA 57.024 39.130 0.00 0.00 45.22 2.41
2015 2038 2.754658 TTCCTCCTCCTCGACCGC 60.755 66.667 0.00 0.00 0.00 5.68
2021 2044 2.185608 GCGTGCTTCCTCCTCCTC 59.814 66.667 0.00 0.00 0.00 3.71
2039 2062 3.746492 GCAACTCGAGGTCAGTTAATTGT 59.254 43.478 18.41 0.00 32.61 2.71
2042 2065 3.589988 CTGCAACTCGAGGTCAGTTAAT 58.410 45.455 18.41 0.00 32.61 1.40
2043 2066 2.288825 CCTGCAACTCGAGGTCAGTTAA 60.289 50.000 18.41 0.00 32.61 2.01
2054 2077 2.528797 GGTGTGTACCTGCAACTCG 58.471 57.895 0.00 0.00 43.97 4.18
2070 2093 1.566298 GGGAGGGAGTGCATCAAGGT 61.566 60.000 0.00 0.00 0.00 3.50
2107 2132 5.735766 ACAAGGCTACAGAGAGGTAATTTC 58.264 41.667 0.00 0.00 0.00 2.17
2132 2157 3.319689 TCATGGCATGTGCATTAAGATGG 59.680 43.478 25.62 0.00 44.36 3.51
2134 2159 4.560716 GCATCATGGCATGTGCATTAAGAT 60.561 41.667 31.59 15.02 44.36 2.40
2137 2162 2.431057 TGCATCATGGCATGTGCATTAA 59.569 40.909 33.59 21.39 44.36 1.40
2160 2185 1.583054 GTCAGAAGCTTGGAACACGT 58.417 50.000 2.10 0.00 39.29 4.49
2161 2186 0.868406 GGTCAGAAGCTTGGAACACG 59.132 55.000 2.10 0.00 39.29 4.49
2162 2187 1.967319 TGGTCAGAAGCTTGGAACAC 58.033 50.000 2.10 0.00 39.29 3.32
2167 2192 1.338105 TGTCGATGGTCAGAAGCTTGG 60.338 52.381 2.10 0.00 0.00 3.61
2280 2307 0.968901 TCCTGTTATCCGTGACCGCT 60.969 55.000 0.00 0.00 0.00 5.52
2292 2319 6.566079 ACATCTGATTTGAGGATCCTGTTA 57.434 37.500 22.02 3.65 0.00 2.41
2381 2412 7.799081 TCAGATGTTTATGGAACTGATGATCT 58.201 34.615 0.00 0.00 39.08 2.75
2435 2474 1.147153 GCCTCTAGCCACCATGTCC 59.853 63.158 0.00 0.00 34.35 4.02
2495 2534 6.370166 GTCACATCTTCCTGGAGTTTAGAAAG 59.630 42.308 0.00 0.00 0.00 2.62
2501 2540 4.437682 TTGTCACATCTTCCTGGAGTTT 57.562 40.909 0.00 0.00 0.00 2.66
2584 2623 5.830991 TGAAGAGATAGAGCTAGAAACCTCC 59.169 44.000 0.00 0.00 0.00 4.30
2764 2803 2.161410 GCACGAATGTCAGGTATGCAAA 59.839 45.455 0.00 0.00 0.00 3.68
2896 2935 5.568620 AACTAATGGACAGAGGACAACTT 57.431 39.130 0.00 0.00 0.00 2.66
2938 2977 6.530120 TCTGTACAAGTATGGAGCAAAGAAA 58.470 36.000 0.00 0.00 0.00 2.52
2946 2986 9.877178 AGTTAAGATTTCTGTACAAGTATGGAG 57.123 33.333 0.00 0.00 0.00 3.86
2965 3012 5.109210 CGACCAACTGATGCATAGTTAAGA 58.891 41.667 16.23 0.00 36.29 2.10
3012 3060 6.802348 CGGTAGATACTATACACTGATGTTGC 59.198 42.308 0.00 0.00 40.48 4.17
3015 3063 5.121925 CGCGGTAGATACTATACACTGATGT 59.878 44.000 0.00 0.00 43.30 3.06
3036 3084 1.205064 CTTCAGAACTGCCAACGCG 59.795 57.895 3.53 3.53 38.08 6.01
3058 3114 1.133668 AGGCTTACATCATTCCCTGCC 60.134 52.381 0.00 0.00 39.40 4.85
3059 3115 2.225467 GAGGCTTACATCATTCCCTGC 58.775 52.381 0.00 0.00 0.00 4.85
3060 3116 3.209410 GTGAGGCTTACATCATTCCCTG 58.791 50.000 4.31 0.00 0.00 4.45
3064 3120 3.873952 GAGGTGTGAGGCTTACATCATTC 59.126 47.826 22.73 10.21 31.60 2.67
3075 3131 1.589716 GCATGGTTGAGGTGTGAGGC 61.590 60.000 0.00 0.00 0.00 4.70
3114 3170 5.923684 CACTGTTTTGTACAAACACAACCTT 59.076 36.000 20.43 9.46 42.89 3.50
3115 3171 5.241949 TCACTGTTTTGTACAAACACAACCT 59.758 36.000 20.43 9.99 42.89 3.50
3117 3173 6.994868 TTCACTGTTTTGTACAAACACAAC 57.005 33.333 20.43 15.66 43.52 3.32
3135 3191 6.233434 TGACATCTGCACTCTAATTTTCACT 58.767 36.000 0.00 0.00 0.00 3.41
3143 3199 6.880529 TCATTTGATTGACATCTGCACTCTAA 59.119 34.615 0.00 0.00 0.00 2.10
3158 3214 5.684184 CGGCTGTTATGATGTCATTTGATTG 59.316 40.000 0.19 0.00 37.76 2.67
3162 3218 3.065786 AGCGGCTGTTATGATGTCATTTG 59.934 43.478 0.00 0.00 37.76 2.32
3177 3233 5.036737 CCATTACTTTGAAATTAGCGGCTG 58.963 41.667 13.86 0.00 0.00 4.85
3241 3298 7.970614 CCTAATTCTTCCTTCAATTTTCTTCGG 59.029 37.037 0.00 0.00 0.00 4.30
3242 3299 7.486232 GCCTAATTCTTCCTTCAATTTTCTTCG 59.514 37.037 0.00 0.00 0.00 3.79
3303 3366 4.974399 AGAGAAAGAGTGTTTAACCCTGG 58.026 43.478 0.00 0.00 0.00 4.45
3311 3374 6.493189 AAGAGGAAGAGAGAAAGAGTGTTT 57.507 37.500 0.00 0.00 0.00 2.83
3312 3375 6.493189 AAAGAGGAAGAGAGAAAGAGTGTT 57.507 37.500 0.00 0.00 0.00 3.32
3313 3376 6.493189 AAAAGAGGAAGAGAGAAAGAGTGT 57.507 37.500 0.00 0.00 0.00 3.55
3338 3401 4.344102 AGGACAACTGCACAAGTAGTTAGA 59.656 41.667 0.00 0.00 46.92 2.10
3414 3477 2.175284 TCCGAACCTGGTTACCCTTTTT 59.825 45.455 12.96 0.00 0.00 1.94
3419 3482 1.297689 GGTCCGAACCTGGTTACCC 59.702 63.158 12.96 6.32 42.80 3.69
3432 3495 1.669115 CTTGTGACAGCCAGGTCCG 60.669 63.158 0.00 0.00 36.97 4.79
3442 3505 3.597675 TATGCGCGGGCTTGTGACA 62.598 57.895 25.62 3.18 40.82 3.58
3443 3506 2.817834 TATGCGCGGGCTTGTGAC 60.818 61.111 25.62 0.00 40.82 3.67
3444 3507 2.817834 GTATGCGCGGGCTTGTGA 60.818 61.111 25.62 4.81 40.82 3.58
3446 3509 3.124921 GTGTATGCGCGGGCTTGT 61.125 61.111 25.62 13.54 40.82 3.16
3450 3520 3.864686 CTGTGTGTATGCGCGGGC 61.865 66.667 18.81 18.81 40.52 6.13
3452 3522 0.528466 ATCTCTGTGTGTATGCGCGG 60.528 55.000 8.83 0.00 0.00 6.46
3454 3524 0.302890 GCATCTCTGTGTGTATGCGC 59.697 55.000 0.00 0.00 35.81 6.09
3457 3527 1.325640 GTGCGCATCTCTGTGTGTATG 59.674 52.381 15.91 0.00 35.25 2.39
3459 3529 0.316841 TGTGCGCATCTCTGTGTGTA 59.683 50.000 15.91 0.00 35.25 2.90
3488 3564 8.986991 ACTACAACCATCTCAGATATCTTCTTT 58.013 33.333 1.33 0.00 29.93 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.